genome.fa.s8388.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008388.1 Hibiscus syriacus cultivar Beakdansim tig00111153_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  179606

Tables:   1   

This is table  1  of  1  ( 100 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9158--9203	20	2.3	20	92	0	74	32	21	26	19	1.97
15914--15960	24	2.0	24	100	0	94	38	19	4	38	1.71
23368--23512	77	1.9	76	80	7	168	26	4	2	65	1.26
23440--23606	84	2.0	83	80	9	189	27	4	2	65	1.23
23508--23537	10	2.9	10	95	5	51	20	0	0	80	0.72
23567--23606	15	2.7	14	85	11	53	30	5	0	65	1.14
23570--23635	26	2.5	27	80	2	71	30	9	0	60	1.27
23648--23714	10	6.6	9	76	23	62	13	4	1	80	0.93
23661--23709	17	2.9	16	75	19	55	16	4	2	77	1.01
23655--23715	13	4.5	13	75	16	52	13	4	1	80	0.95
24384--24493	31	3.7	31	75	19	101	43	9	0	46	1.41
24390--24484	26	3.5	26	78	16	93	43	10	1	45	1.45
24441--24532	40	2.3	39	81	9	96	44	7	1	46	1.39
24340--24503	57	2.9	57	74	14	151	42	7	1	47	1.43
25755--25800	14	3.3	14	84	9	58	65	0	0	34	0.93
28565--28601	15	2.5	15	95	0	65	40	32	10	16	1.83
34182--34231	20	2.5	20	83	0	64	30	18	16	36	1.92
38604--38649	18	2.7	17	93	6	76	32	6	32	28	1.83
39226--39315	38	2.4	38	84	1	137	37	38	12	11	1.78
39263--39875	263	2.3	267	88	5	940	39	22	12	26	1.88
46801--46841	22	2.0	20	90	9	64	17	12	4	65	1.42
51375--51411	16	2.2	18	86	13	53	54	2	0	43	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54180--54217	18	2.2	18	85	4	51	50	0	2	47	1.15
54586--54616	4	7.8	4	100	0	62	51	0	25	22	1.48
56019--56143	60	2.1	60	79	8	130	40	13	10	36	1.79
57287--57316	13	2.2	13	94	5	51	63	0	0	36	0.95
57907--57949	6	6.8	6	89	10	68	34	2	13	48	1.56
63840--63864	12	2.1	12	100	0	50	52	0	0	48	1.00
64957--65004	2	24.0	2	100	0	96	50	0	0	50	1.00
67096--67130	2	17.5	2	100	0	70	48	0	0	51	1.00
69715--69756	18	2.3	18	100	0	84	35	19	11	33	1.88
72321--72346	2	13.0	2	100	0	52	50	0	0	50	1.00
72716--72791	26	3.0	25	83	9	93	36	6	5	51	1.51
72716--72791	27	3.0	26	84	7	95	36	6	5	51	1.51
73893--73943	19	2.6	20	93	3	86	45	5	13	35	1.68
79805--79852	19	2.5	19	89	0	69	29	18	8	43	1.79
81993--82045	3	18.0	3	82	3	54	41	0	1	56	1.10
81989--82047	9	6.4	9	72	16	50	42	0	1	55	1.09
88049--88084	6	6.0	6	100	0	72	66	0	0	33	0.92
88830--88857	3	9.3	3	100	0	56	67	0	0	32	0.91
91507--91531	2	12.5	2	100	0	50	48	0	0	52	1.00
91547--91689	4	35.8	4	68	19	59	27	2	0	69	1.04
91571--91701	13	9.3	15	70	23	65	24	3	0	70	1.08
91607--91685	19	4.4	16	70	22	52	22	1	1	74	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91511--91638	46	3.0	41	81	12	125	31	3	0	64	1.14
91631--91670	15	2.8	15	88	7	57	22	0	2	75	0.93
91618--91701	28	3.0	29	81	16	97	22	2	1	73	1.01
91565--91689	17	7.6	17	70	19	88	25	2	0	71	1.04
91640--91763	66	1.9	66	81	9	155	20	7	1	70	1.20
91714--91773	23	2.5	23	72	5	57	21	10	0	68	1.19
91759--91788	15	1.9	15	93	6	51	16	10	0	73	1.09
96622--96847	36	6.4	36	78	10	216	26	18	13	40	1.88
96642--96901	138	1.9	138	88	0	394	26	19	13	41	1.88
96546--96813	101	2.6	101	82	2	277	30	18	13	38	1.89
96805--96967	65	2.4	67	88	3	240	31	20	9	39	1.84
96796--96988	67	2.9	66	82	4	217	32	20	8	39	1.82
97698--97952	110	2.4	108	80	10	274	33	23	20	22	1.97
99188--99241	26	2.0	27	82	10	67	31	1	1	64	1.14
99210--99364	49	3.3	46	76	16	160	29	1	0	67	1.06
99295--99412	8	14.4	8	74	15	73	19	3	0	76	0.98
99207--99435	91	2.5	90	82	8	245	25	3	1	70	1.09
99300--99397	24	3.8	24	76	18	83	20	3	1	75	1.00
99272--99353	34	2.3	35	79	12	87	28	2	0	69	1.01
99286--99433	53	2.8	52	78	9	138	20	4	1	74	1.06
99430--99477	15	3.2	15	77	8	53	12	6	4	77	1.11
99444--99495	27	1.9	27	84	7	70	19	7	1	71	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99461--99529	36	1.9	36	82	5	86	24	7	1	66	1.25
99446--99512	27	2.4	27	75	5	62	22	5	1	70	1.18
99859--99884	2	13.0	2	100	0	52	50	0	0	50	1.00
103264--103310	3	16.0	3	86	4	69	61	0	0	38	0.96
104183--106063	122	15.5	122	78	4	1485	28	13	22	35	1.92
108861--108908	13	3.6	14	80	11	64	2	8	6	83	0.88
108870--108929	16	3.9	15	85	10	68	3	11	3	81	0.93
108866--108938	15	4.6	16	77	19	55	4	12	2	80	0.95
108865--108932	16	4.7	13	79	15	64	2	11	2	82	0.89
108870--108941	35	2.1	35	81	5	83	4	11	4	80	0.99
110894--110964	22	3.2	22	75	0	70	36	21	16	25	1.94
114577--114625	24	2.0	24	100	0	98	36	24	20	18	1.94
117878--117962	22	3.9	22	78	6	91	42	21	12	23	1.87
117878--117963	44	2.0	44	81	4	102	41	20	13	23	1.88
120947--120979	2	16.5	2	100	0	66	51	0	0	48	1.00
122928--123006	28	2.8	28	78	5	88	15	26	24	34	1.94
126417--126487	22	3.3	22	73	15	67	40	4	2	52	1.36
134521--134570	20	2.4	22	83	13	77	0	24	8	68	1.16
134529--134567	20	2.0	20	100	0	78	0	23	5	71	1.05
135043--135143	3	33.7	3	91	0	166	62	0	2	34	1.11
135462--136023	113	5.0	113	94	1	914	29	19	14	37	1.91
136755--137067	84	3.7	84	97	0	574	38	21	13	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137833--137874	19	2.2	20	91	4	68	52	11	4	30	1.59
138208--138275	7	10.1	7	80	12	72	0	16	0	83	0.64
138208--138265	19	3.1	18	79	16	73	0	13	0	86	0.58
138216--138275	18	3.5	17	82	11	77	0	16	0	83	0.65
150458--150505	19	2.4	21	79	13	64	0	22	8	68	1.16
150466--150502	19	1.9	19	94	0	65	0	21	5	72	1.04
150975--151069	3	31.7	3	89	4	147	62	0	3	34	1.11
151178--151232	23	2.5	22	83	13	69	52	7	3	36	1.47
161419--161478	29	2.0	31	90	6	97	35	6	16	41	1.75
166026--166065	12	3.3	12	85	0	53	12	45	5	37	1.64
175325--175891	112	5.1	112	91	4	902	45	13	15	25	1.82
175878--176021	66	2.2	67	89	1	227	37	9	16	36	1.82

Tables:   1

The End!