Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008389.1 Hibiscus syriacus cultivar Beakdansim tig00111154_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  140999

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
137--184
20
2.3
20
89
3
69
56
10
6
27
1.57
514--553
1
40.0
1
84
0
53
0
7
0
92
0.38
513--560
15
3.2
15
88
5
71
0
12
0
87
0.54
514--557
22
2.1
22
91
8
74
0
9
0
90
0.44
513--557
12
3.9
12
82
11
58
0
11
0
88
0.50
513--557
10
4.4
10
86
13
65
0
11
0
88
0.50
12668--12706
20
2.0
20
100
0
78
0
23
5
71
1.05
13181--13281
3
33.7
3
91
0
166
62
0
2
34
1.11
13390--13444
23
2.5
22
83
13
69
52
7
3
36
1.47
23639--23698
29
2.0
31
90
6
97
35
6
16
41
1.75
28254--28293
12
3.3
12
85
0
53
12
45
5
37
1.64
37585--38155
223
2.6
224
92
1
961
45
13
15
25
1.83
37585--38155
112
5.1
112
93
0
943
45
13
15
25
1.83
38140--38288
66
2.2
67
91
1
255
36
9
16
36
1.81
38965--39012
23
2.1
23
88
0
69
37
16
8
37
1.79
47694--47718
9
2.8
9
100
0
50
0
12
32
56
1.36
51193--51229
16
2.1
19
85
14
53
29
2
2
64
1.21
51600--51706
30
3.7
29
81
8
112
41
8
6
43
1.61
51624--51675
15
3.6
14
73
12
52
34
9
7
48
1.65
52462--52847
127
3.3
121
75
17
391
50
7
3
38
1.48
57664--57688
9
2.8
9
100
0
50
0
12
32
56
1.36
61163--61199
16
2.1
19
85
14
53
29
2
2
64
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61572--61654
29
2.9
29
78
7
89
40
8
7
43
1.63
61570--61677
30
3.7
29
81
6
112
40
8
7
43
1.63
61594--61646
15
3.6
14
73
9
52
33
9
9
47
1.68
62417--62822
110
3.4
121
76
16
427
50
6
3
39
1.47
67638--67662
9
2.8
9
100
0
50
0
12
32
56
1.36
76910--76996
30
3.0
29
84
3
104
41
8
6
43
1.61
76935--76987
15
3.6
14
73
9
52
33
9
9
47
1.68
76935--77018
30
2.8
30
85
0
105
36
10
8
44
1.70
83502--83584
29
2.9
29
78
7
89
40
8
7
43
1.63
83500--83585
30
3.0
29
84
5
104
40
8
6
44
1.61
83524--83576
15
3.6
14
73
9
52
33
9
9
47
1.68
83524--83607
30
2.8
30
85
0
105
36
10
8
44
1.70
84350--84787
128
3.5
123
77
13
473
49
7
4
39
1.49
84546--84784
118
2.0
117
82
7
286
48
8
4
38
1.53
95102--95202
3
33.7
3
87
0
148
33
1
0
64
1.05
95672--95706
18
1.9
18
88
11
54
74
8
14
2
1.17
96622--96663
21
2.0
22
85
4
59
35
2
2
59
1.23
108008--108125
1
118.0
1
70
0
74
84
0
12
2
0.72
108008--108129
5
23.6
5
78
17
92
84
0
13
2
0.72
108008--108125
12
9.4
12
77
14
114
84
0
12
2
0.72
109065--109629
84
6.7
84
98
0
1058
27
15
23
34
1.94
110240--110877
113
5.6
113
95
0
1015
37
13
19
28
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
111172--111272
3
33.7
3
84
4
132
33
1
0
64
1.05
111743--111777
18
1.9
18
88
11
54
74
8
14
2
1.17
112624--112664
20
2.0
21
85
4
57
36
2
2
58
1.24
115584--115639
19
2.9
19
89
2
76
19
33
16
30
1.94
115626--115683
22
2.6
23
86
5
82
22
18
24
34
1.96
121230--121311
35
2.4
36
83
8
107
26
2
30
40
1.69
121246--121313
35
1.9
35
93
0
118
29
1
26
42
1.64
121894--121933
21
1.9
21
89
0
62
57
0
5
37
1.21
124175--124253
42
1.9
41
86
2
113
26
22
13
36
1.92
125407--125444
20
1.9
20
88
0
58
21
18
31
28
1.97
125471--125523
20
2.7
20
87
0
79
26
18
20
33
1.96
127800--127838
18
2.1
19
85
4
53
51
5
2
41
1.38
131538--131578
18
2.3
19
83
12
59
75
0
0
24
0.80
131547--131587
18
2.3
18
91
0
64
68
0
2
29
1.03
132670--132746
26
3.0
26
75
1
75
53
15
3
27
1.60
136366--136436
32
2.2
32
82
5
81
40
26
11
21
1.87

Tables:   1

The End!