genome.fa.s8393.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008393.1 Hibiscus syriacus cultivar Beakdansim tig00111158_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  162953

Tables:   1   

This is table  1  of  1  ( 97 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8992--9061	36	1.9	36	91	0	113	31	20	15	32	1.94
17813--17868	28	2.0	28	100	0	112	32	25	10	32	1.90
20336--20513	81	2.2	82	87	1	259	28	19	15	37	1.92
20261--20513	41	6.2	41	86	2	267	28	20	17	33	1.95
20810--21228	82	5.1	81	71	12	295	30	18	18	32	1.95
20811--21207	164	2.4	162	85	5	537	31	18	18	30	1.95
20810--21228	41	10.2	39	72	16	212	30	18	18	32	1.95
27267--27327	21	2.9	21	97	0	113	19	4	21	54	1.63
27462--27838	43	8.8	43	91	0	585	24	25	18	31	1.98
30688--30742	20	2.8	20	91	0	92	30	9	5	54	1.54
31244--31518	42	6.5	42	81	9	319	24	20	21	34	1.96
31244--31518	127	2.2	126	88	3	410	24	20	21	34	1.96
33866--33901	18	1.9	19	88	5	56	47	8	5	38	1.57
34823--34858	15	2.3	16	90	4	56	36	2	2	58	1.27
35502--35551	10	5.0	10	75	0	55	30	24	20	26	1.98
35502--35551	20	2.5	20	93	0	82	30	24	20	26	1.98
35573--35854	22	12.5	22	74	12	232	46	0	7	45	1.34
35568--35833	44	5.8	45	78	14	260	48	0	6	44	1.32
35686--35756	33	2.2	33	97	0	133	54	0	7	38	1.27
35664--35769	55	1.9	55	88	0	158	50	0	6	42	1.28
35624--35814	99	2.0	95	89	6	294	49	0	6	43	1.29
35877--35936	31	1.9	31	93	0	102	46	6	3	43	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38827--40446	106	15.5	105	90	2	2442	23	17	25	33	1.96
38827--40442	422	3.9	417	90	2	2462	23	17	25	33	1.96
49023--49065	4	10.8	4	89	0	59	25	2	27	44	1.66
49780--50013	118	2.0	117	99	0	459	46	9	9	34	1.68
50151--50180	15	2.1	15	93	6	53	53	0	0	46	1.00
60605--60648	20	2.1	22	83	8	56	36	27	0	36	1.57
61183--61232	17	3.1	17	68	26	54	20	6	22	52	1.68
66251--66279	6	4.8	6	100	0	58	48	34	17	0	1.47
67603--67632	9	3.3	9	100	0	60	30	0	0	70	0.88
69678--69954	43	6.5	42	80	5	263	34	21	21	22	1.97
69732--69954	85	2.6	86	87	4	310	34	23	21	20	1.97
74204--74714	41	12.4	41	81	4	535	33	19	19	27	1.96
74193--74670	125	3.8	123	84	4	530	33	19	19	27	1.96
74204--74670	166	2.8	166	88	1	688	33	19	19	27	1.96
76918--77013	50	1.9	50	85	4	131	20	21	15	41	1.90
84014--84049	18	2.0	18	94	0	63	19	47	22	11	1.80
84036--84078	8	5.6	8	83	10	63	13	34	25	25	1.93
84039--84077	7	5.3	7	90	9	60	12	33	25	28	1.93
84039--84078	15	2.7	15	92	0	71	12	35	25	27	1.92
89068--89106	20	2.0	20	100	0	78	20	10	17	51	1.74
89789--89848	23	2.6	23	89	0	93	31	18	11	38	1.87
90445--90503	19	3.1	19	85	4	75	33	22	11	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90376--90503	20	6.6	20	73	14	81	34	24	11	29	1.91
91248--91281	12	2.8	12	90	0	50	55	29	0	14	1.40
91407--91460	24	2.2	24	93	0	90	20	18	20	40	1.91
93517--93676	64	2.5	64	84	4	198	34	19	20	26	1.96
94338--94427	31	3.0	30	73	9	83	28	16	20	34	1.94
94359--94463	30	3.5	30	78	3	95	25	18	21	34	1.96
97292--97451	64	2.5	64	81	4	180	35	18	19	26	1.95
97941--97974	16	2.0	18	88	11	54	41	5	11	41	1.66
98107--98199	30	3.1	30	79	11	100	26	18	21	33	1.96
98125--98210	30	2.8	30	85	1	100	26	18	24	30	1.98
98128--98233	30	3.5	30	81	3	97	24	18	24	32	1.97
100324--100391	20	3.4	20	81	0	73	23	16	20	39	1.91
100848--100884	18	2.1	18	89	0	56	32	5	10	51	1.60
100840--100892	24	2.2	24	86	0	70	35	3	13	47	1.61
101194--101280	39	2.2	39	91	0	147	48	19	13	18	1.81
101523--101564	20	2.1	20	90	0	66	16	19	26	38	1.92
101669--101808	66	2.2	61	85	7	174	52	16	0	30	1.49
103168--103263	21	4.6	21	76	13	65	23	16	33	26	1.96
105126--105172	20	2.4	20	89	3	69	14	17	17	51	1.77
105435--105479	22	2.1	22	88	8	67	28	11	33	26	1.91
105435--105492	22	2.7	22	84	5	66	27	10	37	24	1.88
105620--105724	20	5.2	20	78	8	124	20	16	22	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105620--105724	40	2.6	40	89	3	149	20	16	22	40	1.90
105620--105761	60	2.3	61	77	5	153	23	17	22	36	1.95
112903--112939	7	5.4	7	93	6	67	24	29	29	16	1.96
112903--112939	13	2.7	14	91	8	67	24	29	29	16	1.96
112946--113054	19	5.7	19	86	5	148	26	28	25	19	1.99
112948--113037	10	9.4	9	75	19	69	26	30	24	18	1.98
112948--113054	9	11.1	10	77	11	107	27	28	24	19	1.99
120234--120270	13	2.7	14	91	8	67	24	29	29	16	1.96
120260--120317	17	3.4	17	97	0	107	15	24	43	17	1.87
120234--120270	7	5.4	7	93	6	67	24	29	29	16	1.96
120311--120381	19	3.7	19	88	1	97	28	29	23	18	1.98
120311--120380	9	7.3	9	73	12	59	28	30	24	17	1.97
125424--125468	20	2.2	20	96	0	81	26	22	11	40	1.87
125567--125608	20	2.1	20	86	0	57	38	19	14	28	1.90
126020--126052	2	16.5	2	100	0	66	51	0	0	48	1.00
126454--126486	16	1.9	18	88	11	52	30	3	9	57	1.45
129145--129268	3	40.7	3	86	3	176	37	0	0	62	1.01
130407--130442	19	1.9	19	94	5	65	22	0	5	72	1.05
142266--142307	19	2.2	20	91	4	68	30	4	11	52	1.59
142864--143388	52	10.1	52	97	1	984	24	15	24	36	1.93
144006--144909	113	8.0	113	96	0	1565	36	14	20	28	1.92
145206--145323	3	38.7	3	86	3	164	37	0	0	61	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
146030--146058	13	2.2	13	100	0	58	0	31	62	6	1.22
146479--146514	19	1.9	19	94	5	65	22	0	5	72	1.05
156247--156290	5	8.8	5	92	0	61	4	40	36	18	1.71
156288--156372	6	14.2	6	97	0	125	5	16	49	28	1.69
156647--156701	22	2.5	22	75	0	56	29	9	23	38	1.85
162210--162258	5	9.8	5	93	0	62	6	40	36	16	1.73
162256--162313	6	10.2	6	87	10	77	3	17	48	31	1.64
162267--162310	21	2.1	21	91	0	70	4	18	47	29	1.68
162584--162638	22	2.5	22	75	0	56	29	9	23	38	1.85

Tables:   1

The End!