genome.fa.s8394.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008394.1 Hibiscus syriacus cultivar Beakdansim tig00111160_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  259054

Tables:   1   

This is table  1  of  1  ( 94 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
774--811	20	2.1	19	85	14	53	34	0	10	55	1.34
2381--2405	10	2.5	10	100	0	50	52	0	0	48	1.00
3708--3819	35	3.2	34	83	7	136	41	21	0	35	1.59
4824--4936	35	3.2	34	83	5	145	34	0	21	43	1.59
10204--10250	12	3.7	12	81	15	58	46	17	19	17	1.84
12512--12551	21	1.9	21	94	0	71	30	15	7	47	1.72
12546--12643	33	3.0	33	92	2	155	32	7	15	44	1.73
12629--12683	13	4.2	13	75	13	58	34	3	12	49	1.59
13080--13135	15	3.6	15	79	9	67	32	12	12	42	1.80
13099--13132	18	1.9	18	94	5	61	38	11	11	38	1.79
13226--13257	16	2.0	17	88	11	50	43	21	21	12	1.86
16762--16801	21	2.0	20	85	5	53	40	7	2	50	1.44
25945--25980	12	2.8	13	83	8	56	52	0	0	47	1.00
26744--26799	24	2.4	23	82	8	69	44	14	0	41	1.45
36549--36628	42	1.9	42	82	10	101	26	1	6	66	1.23
36539--36637	42	2.4	39	75	20	96	27	1	5	66	1.19
48150--48907	105	7.2	105	92	3	1169	33	24	18	23	1.97
48715--49026	164	1.9	166	84	6	425	33	25	18	22	1.97
48940--49188	106	2.3	106	92	1	401	32	25	19	22	1.97
50857--50885	13	2.3	13	94	5	51	24	0	0	75	0.80
50933--50964	2	16.0	2	93	0	55	46	0	0	53	1.00
52530--52563	2	17.0	2	100	0	68	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53996--54064	17	3.8	17	76	16	59	53	1	2	42	1.24
54014--54064	21	2.7	18	80	16	59	50	1	1	45	1.24
54258--54291	13	2.7	13	86	4	52	82	0	17	0	0.67
71455--71487	3	11.0	3	100	0	66	66	0	0	33	0.92
73485--73537	17	2.9	17	81	15	54	64	0	3	32	1.12
79622--79670	25	2.0	25	100	0	98	42	4	4	48	1.40
82854--82969	60	2.0	60	81	5	137	32	16	12	37	1.87
90060--90224	60	2.8	60	78	2	163	44	7	20	28	1.78
90103--90215	59	1.9	60	83	5	149	51	7	15	25	1.70
99444--99506	24	2.6	24	97	0	117	23	25	17	33	1.96
99624--99709	23	3.7	23	72	14	77	20	25	25	27	1.99
108712--108774	33	1.9	33	93	0	108	38	22	14	25	1.92
113445--113507	33	1.9	33	93	0	108	38	22	14	25	1.92
114541--114586	24	1.9	24	82	8	58	69	2	2	26	1.11
125286--125331	23	2.0	23	100	0	92	17	34	8	39	1.80
135278--135347	24	2.9	24	78	0	77	45	17	11	25	1.81
136026--136099	29	2.5	28	82	8	85	39	25	5	29	1.78
142278--142347	24	2.9	24	82	0	86	45	18	11	24	1.82
143038--143111	29	2.6	29	79	12	71	39	22	5	32	1.77
143141--143187	13	3.3	13	78	21	58	12	23	46	17	1.82
143147--143188	17	2.4	18	96	4	77	9	23	50	16	1.75
144616--144730	54	2.1	54	80	15	121	52	2	0	45	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
144697--144763	26	2.5	26	77	15	66	50	1	0	47	1.10
144729--144813	44	2.0	43	92	2	143	45	0	4	49	1.23
146328--146364	3	12.0	3	94	5	65	64	0	0	35	0.94
151334--151387	2	27.0	2	100	0	108	50	0	0	50	1.00
153308--153340	17	1.9	17	100	0	66	54	0	0	45	0.99
156529--156576	4	12.8	4	89	8	66	75	0	2	22	0.91
157468--157573	46	2.3	46	95	0	185	39	18	8	33	1.81
161007--161072	23	2.9	23	88	4	89	19	13	22	43	1.86
161117--161159	22	2.0	22	86	9	61	46	2	18	32	1.62
162183--162234	21	2.5	21	81	3	61	38	19	25	17	1.93
162245--162296	20	2.6	20	93	0	86	26	28	19	25	1.98
162482--162525	22	2.0	22	90	0	70	20	43	15	20	1.88
164056--164101	18	2.6	18	85	0	65	28	45	15	10	1.79
164844--164935	19	5.4	19	66	24	78	43	19	20	16	1.88
164844--164954	33	3.4	33	86	5	170	41	19	23	15	1.89
165082--165118	14	2.6	14	91	0	65	45	24	0	29	1.53
166475--166541	21	3.2	21	68	4	55	19	20	35	23	1.95
166514--166596	41	2.0	41	85	0	112	22	16	38	21	1.93
168595--168723	39	3.5	37	75	13	131	44	22	20	11	1.84
168595--168725	19	7.1	19	79	11	146	44	22	21	11	1.84
169330--169421	20	4.5	22	69	21	65	19	17	19	43	1.88
169284--169377	20	4.7	20	77	7	82	24	15	25	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
169305--169439	41	3.3	41	83	4	139	20	19	21	39	1.93
169366--169458	21	4.6	20	79	4	105	17	23	18	40	1.90
169366--169458	41	2.3	41	98	0	177	17	23	18	40	1.90
170674--170707	17	2.0	17	88	11	52	38	0	2	58	1.13
172462--172527	5	13.2	5	100	0	132	40	0	0	59	0.98
189829--189884	28	2.0	28	82	6	69	37	0	1	60	1.07
192900--192975	23	3.3	23	98	1	145	42	3	0	53	1.19
203395--203426	11	2.8	11	95	4	55	43	0	0	56	0.99
203422--203486	3	21.7	3	96	0	121	64	0	1	33	1.03
203623--204489	113	7.6	113	90	3	1202	29	19	13	37	1.91
205138--205450	83	3.8	83	92	1	529	38	22	13	26	1.90
206539--206590	9	5.6	9	84	8	50	0	15	0	84	0.62
206542--206587	10	4.5	10	91	5	74	0	10	0	89	0.50
206542--206587	21	2.2	21	96	0	83	0	10	0	89	0.50
217226--217275	18	2.8	17	79	11	55	74	2	0	24	0.93
219331--219362	11	2.8	11	95	4	55	43	0	0	56	0.99
219358--219434	3	25.7	3	97	0	145	64	0	1	33	1.01
229182--229238	13	4.2	14	73	15	57	21	3	10	64	1.39
229163--229226	26	2.4	27	87	5	87	20	3	10	65	1.37
230249--230287	14	2.6	15	88	8	53	69	2	2	25	1.14
233472--233524	21	2.5	21	81	0	61	24	9	26	39	1.86
236622--236692	31	2.3	31	78	7	83	45	19	2	32	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
243936--243981	14	3.5	14	78	21	55	39	0	2	58	1.10
245189--245236	21	2.2	22	85	3	62	50	0	0	50	1.00
245207--245252	21	2.1	22	88	4	67	52	0	0	47	1.00
251070--251103	16	2.1	16	94	0	59	32	8	26	32	1.87
251854--251885	15	2.1	16	94	5	57	50	18	25	6	1.70
258092--258116	12	2.1	12	100	0	50	52	8	0	40	1.31

Tables:   1

The End!