genome.fa.s8395.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008395.1 Hibiscus syriacus cultivar Beakdansim tig00111161_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  193614

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2099--2139	13	3.1	14	75	10	50	19	4	12	63	1.46
2080--2139	26	2.3	27	85	5	79	20	3	10	66	1.35
6330--6382	21	2.5	21	81	0	61	24	9	26	39	1.86
9462--9532	31	2.3	31	78	7	83	45	19	2	32	1.65
18004--18098	21	4.1	21	71	21	57	53	1	0	45	1.07
18022--18067	22	2.0	23	87	4	67	54	0	0	45	0.99
18029--18092	26	2.5	25	78	14	67	53	1	0	45	1.10
23891--23924	16	2.1	16	94	0	59	32	8	26	32	1.87
24675--24706	15	2.1	16	94	5	57	50	18	25	6	1.70
27999--28023	11	2.3	11	100	0	50	16	16	52	16	1.76
30946--30974	14	2.1	14	100	0	58	51	6	0	41	1.28
41463--41527	30	2.2	30	85	0	85	24	38	12	24	1.90
41489--41546	30	1.9	30	82	6	73	27	34	12	25	1.91
41924--41989	21	3.1	21	86	0	96	30	22	15	31	1.95
50779--50840	30	2.1	30	90	0	97	59	1	12	25	1.43
53243--53337	34	2.8	32	76	14	93	46	9	4	40	1.56
53275--53491	63	3.5	61	75	16	182	45	8	5	41	1.56
54861--54915	26	2.3	23	79	17	58	47	0	3	49	1.19
55369--55420	23	2.3	23	86	0	77	55	13	17	13	1.69
57604--57667	31	2.1	31	82	5	78	57	4	0	37	1.19
61594--61626	17	1.9	17	100	0	66	24	12	24	39	1.89
61685--62418	185	4.0	185	93	3	1222	44	8	3	42	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63473--63528	27	2.0	28	86	10	80	26	5	5	62	1.39
63790--63814	1	25.0	1	100	0	50	100	0	0	0	0.00
72636--72684	21	2.3	21	78	0	53	42	10	12	34	1.76
76404--76439	15	2.4	15	95	0	63	41	0	0	58	0.98
76815--77258	225	2.0	225	93	3	759	45	8	7	39	1.61
77324--77373	20	2.5	20	81	12	75	52	10	16	22	1.73
77491--77532	19	2.3	18	88	8	59	52	9	16	21	1.72
79829--79894	33	2.0	33	87	0	96	28	1	45	24	1.62
80961--81023	19	3.4	19	95	2	110	31	3	9	55	1.48
81103--82100	194	5.1	198	92	5	1694	36	15	15	32	1.89
81103--82100	386	2.6	393	93	4	1704	36	15	15	32	1.89
83154--83204	22	2.3	23	86	3	68	35	7	19	37	1.81
83164--83214	23	2.3	22	86	10	68	37	1	17	43	1.61
83569--83641	21	3.5	21	83	9	78	34	5	20	39	1.76
84523--84551	14	2.0	15	93	6	51	24	27	13	34	1.93
88524--88556	16	2.1	16	100	0	66	30	18	12	39	1.87
90057--90104	21	2.3	20	82	10	60	47	20	2	29	1.61
93064--93090	2	13.5	2	100	0	54	51	0	0	48	1.00
96892--96918	6	4.5	6	100	0	54	14	37	14	33	1.88
105401--105444	2	23.0	2	84	9	56	50	0	2	47	1.13
107110--107592	55	9.0	54	78	11	333	30	23	16	29	1.96
107151--107446	109	2.7	111	85	6	406	32	23	15	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107175--107601	51	8.1	51	80	8	344	30	23	15	29	1.95
107587--108150	54	10.4	54	93	0	966	18	26	19	35	1.94
112736--112886	72	2.1	72	94	0	266	23	27	13	36	1.92
117770--117872	27	3.7	27	73	20	79	46	0	2	49	1.23
126390--126414	2	12.5	2	100	0	50	0	48	0	52	1.00
126414--126443	2	15.0	2	92	0	51	46	3	0	50	1.18
132854--132898	20	2.2	20	80	0	54	64	2	0	33	1.06
133548--133584	2	18.5	2	100	0	74	0	48	0	51	1.00
139638--139696	30	2.0	30	86	6	84	15	27	18	38	1.91
146963--147035	36	2.0	36	97	0	137	42	8	20	28	1.81
148832--148894	12	5.2	12	71	21	60	26	14	22	36	1.92
148816--148955	24	5.8	24	92	3	219	26	14	20	39	1.90
149041--149139	35	2.9	35	93	1	164	10	32	30	27	1.89
149203--149261	2	29.5	2	100	0	118	49	0	0	50	1.00
150400--150441	20	2.0	21	86	13	61	19	4	4	71	1.22
150456--150508	23	2.3	23	93	0	88	20	13	11	54	1.69
151157--151516	41	8.7	41	80	1	321	28	19	19	33	1.96
151157--151516	82	4.4	82	87	1	414	28	19	19	33	1.96
151144--151509	123	3.0	123	81	2	367	28	19	19	33	1.96
152072--152254	43	4.3	43	92	0	285	27	21	22	27	1.99
152029--152254	86	2.6	86	84	2	285	27	22	22	28	1.99
152751--152838	29	3.0	29	81	0	104	14	30	32	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
152882--152935	22	2.5	22	90	3	92	16	35	27	20	1.94
152939--153000	31	2.0	31	93	0	106	25	38	14	20	1.91
155592--155818	39	5.8	39	81	2	181	34	15	19	30	1.93
156487--156566	40	2.0	40	100	0	160	32	20	20	27	1.97
157900--157944	21	2.2	20	84	4	54	26	0	26	46	1.53
159251--159294	21	2.1	21	83	8	54	45	0	13	40	1.44
168102--168127	8	3.2	8	100	0	52	50	0	0	50	1.00
168052--168120	26	2.6	27	77	9	70	44	5	2	46	1.42
172366--172441	36	2.1	36	97	0	143	43	14	10	31	1.79
176919--176948	15	2.0	15	100	0	60	13	46	26	13	1.80
177367--177442	36	2.1	36	97	0	143	43	14	10	31	1.79
184849--185180	164	2.0	164	88	2	497	46	15	16	22	1.83
193277--193310	16	2.1	16	100	0	68	29	5	23	41	1.78

Tables:   1

The End!