genome.fa.s8396.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008396.1 Hibiscus syriacus cultivar Beakdansim tig00111164_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  416257

Tables:   1   2   

This is table  2  of  2  ( 185 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
250993--251034	21	2.0	21	95	0	75	26	28	21	23	1.99
252452--252499	19	2.5	20	86	3	71	54	6	10	29	1.59
254874--254914	21	2.0	21	95	0	73	26	29	19	24	1.98
255027--255105	21	4.0	21	69	25	73	15	26	37	20	1.92
255373--255564	36	5.3	36	86	2	224	31	21	25	21	1.98
262013--262065	21	2.5	21	100	0	106	16	15	28	39	1.89
266828--267013	33	5.6	33	87	2	239	32	16	22	29	1.96
275821--275855	18	1.9	18	94	0	61	71	0	5	22	1.07
279262--279314	21	2.5	21	84	0	70	20	26	18	33	1.96
279304--279376	20	3.7	20	94	0	119	35	23	20	20	1.96
280226--280279	24	2.2	24	93	0	90	20	18	20	40	1.91
282693--282741	20	2.5	20	90	6	73	34	26	20	18	1.95
282733--282808	33	2.3	34	95	2	136	43	19	23	13	1.86
282746--282814	19	3.8	19	73	21	76	44	18	21	14	1.85
282953--282989	14	2.6	14	86	0	56	48	21	0	29	1.50
284344--284436	42	2.2	42	80	3	107	22	17	39	20	1.92
284980--285048	20	3.5	20	93	0	111	33	21	20	24	1.97
285093--285216	20	6.5	20	80	10	161	17	17	20	43	1.88
285055--285216	40	4.4	39	80	12	157	17	19	20	43	1.88
287067--287136	20	3.5	20	90	0	86	41	25	17	15	1.89
291615--291678	34	1.9	33	87	3	92	39	0	6	54	1.26
293667--293691	13	1.9	13	100	0	50	8	60	0	32	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
297348--297383	2	18.0	2	100	0	72	50	0	0	50	1.00
309493--309797	54	5.5	53	77	8	164	27	21	25	25	1.99
309495--309739	27	8.9	28	67	19	113	27	20	26	25	1.99
309551--309794	27	8.8	28	68	19	145	26	21	26	25	2.00
309497--309797	55	5.5	54	81	5	291	27	21	25	25	1.99
309913--310070	81	2.0	81	90	0	253	31	21	30	16	1.95
314564--314636	30	2.5	29	77	16	80	38	0	2	58	1.12
314574--314637	31	2.1	32	88	5	96	37	0	3	59	1.13
314574--314640	30	2.2	30	84	10	84	37	0	2	59	1.13
319043--319081	20	2.0	20	89	0	60	33	23	10	33	1.88
335872--336057	95	2.0	95	90	0	291	26	20	18	33	1.96
336024--336249	21	11.0	21	70	11	130	22	18	22	37	1.94
336049--336188	42	3.4	40	88	2	181	22	17	22	37	1.94
336030--336249	103	2.1	102	85	6	284	22	17	22	37	1.94
336126--336250	61	2.0	61	92	0	205	25	16	20	37	1.93
346228--346265	20	1.9	20	94	0	67	21	23	10	44	1.83
348004--348037	17	2.0	17	88	0	50	52	8	0	38	1.33
352752--352794	14	2.9	15	79	6	61	41	6	20	30	1.79
352777--352826	20	2.5	20	96	0	91	42	8	16	34	1.77
352970--353010	21	1.9	22	90	5	66	46	2	0	51	1.14
353145--353207	23	2.7	23	80	5	63	46	1	1	50	1.20
353183--353239	19	2.8	19	75	19	53	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
353190--353238	21	2.3	20	86	10	62	51	0	0	48	1.00
353182--353342	60	2.7	59	77	13	150	46	0	0	52	1.09
353309--353352	22	2.0	23	86	4	63	54	0	0	45	0.99
358798--358822	2	12.5	2	100	0	50	52	0	0	48	1.00
360339--360388	5	9.8	5	81	12	50	20	4	0	76	0.95
360343--360395	9	6.0	8	81	14	52	20	5	0	73	1.03
360515--360557	22	2.0	22	86	9	61	25	9	0	65	1.22
360533--360572	17	2.4	17	83	8	55	22	7	0	70	1.12
360495--360584	17	4.8	17	71	14	54	23	7	0	68	1.15
360794--360839	17	2.8	17	90	3	67	10	4	6	78	1.08
367946--367996	24	2.0	25	88	11	77	54	27	9	7	1.60
372390--372495	45	2.4	44	90	4	176	33	8	16	40	1.79
373592--373697	45	2.4	44	90	4	176	40	16	8	33	1.79
382380--382550	59	2.9	56	79	7	180	40	6	20	32	1.78
389768--389805	11	3.3	11	86	13	58	15	52	15	15	1.75
389760--389805	13	3.6	13	85	14	69	17	52	17	13	1.75
393065--393096	15	2.1	16	94	5	57	6	25	18	50	1.70
393990--394034	13	3.5	13	93	6	83	17	51	17	13	1.77
395757--395781	10	2.5	10	100	0	50	56	0	0	44	0.99
407933--407957	12	2.1	12	100	0	50	28	32	0	40	1.57
408373--408404	2	16.0	2	100	0	64	50	0	0	50	1.00

Tables:   1   2

The End!