Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008397.1 Hibiscus syriacus cultivar Beakdansim tig00111166_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2560905
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 13
Found at i:3089 original size:15 final size:16
Alignment explanation
Indices: 3061--3092 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
3051 AAAATCTTTC
3061 TTTCCCGTTCTGGATT
1 TTTCCCGTTCTGGATT
3077 TTTCCCG-TCTGGATT
1 TTTCCCGTTCTGGATT
3092 T
1 T
3093 GGATCTGCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.06, C:0.25, G:0.19, T:0.50
Consensus pattern (16 bp):
TTTCCCGTTCTGGATT
Found at i:4002 original size:12 final size:12
Alignment explanation
Indices: 3979--4021 Score: 77
Period size: 12 Copynumber: 3.5 Consensus size: 12
3969 AAAAAATTAC
3979 AGCAGCCCCCCTT
1 AGCAG-CCCCCTT
3992 AGCAGCCCCCTT
1 AGCAGCCCCCTT
4004 AGCAGCCCCCTT
1 AGCAGCCCCCTT
4016 AGCAGC
1 AGCAGC
4022 ACATGTGTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
12 25 0.83
13 5 0.17
ACGTcount: A:0.19, C:0.49, G:0.19, T:0.14
Consensus pattern (12 bp):
AGCAGCCCCCTT
Found at i:17756 original size:12 final size:12
Alignment explanation
Indices: 17739--17763 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
17729 TAAAATTTGA
17739 ACTTCCAATCTT
1 ACTTCCAATCTT
17751 ACTTCCAATCTT
1 ACTTCCAATCTT
17763 A
1 A
17764 TTTAAAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.32, G:0.00, T:0.40
Consensus pattern (12 bp):
ACTTCCAATCTT
Found at i:18185 original size:2 final size:2
Alignment explanation
Indices: 18174--18207 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
18164 ATTCTAATCT
18174 TA TA TA -A TA TA TA TA TA TA TA TA T- TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
18208 ATTTTTCAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
1 2 0.07
2 28 0.93
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:18196 original size:17 final size:17
Alignment explanation
Indices: 18174--18207 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
18164 ATTCTAATCT
18174 TATATAATATATATATA
1 TATATAATATATATATA
*
18191 TATATATTATATATATA
1 TATATAATATATATATA
18208 ATTTTTCAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TATATAATATATATATA
Found at i:31189 original size:60 final size:59
Alignment explanation
Indices: 31053--31189 Score: 138
Period size: 60 Copynumber: 2.3 Consensus size: 59
31043 ATAATCAAGT
* * *
31053 GATC-ATTT-TGTAACTTTTATTAGTCGAAAGACTCAACAAAATAATACCCTATTGTCAG
1 GATCTATTTATGT-ACTTTTAATAGTCGAAAAACTCAACAAAATAATACCCTATAGTCAG
* * * *
31111 GAGTCTTCTTTAT-AACTTTTAATAGTC-ATAAAACTCAATAAAATAATACTCTATAGTCGAG
1 GA-TC-TATTTATGTACTTTTAATAGTCGA-AAAACTCAACAAAATAATACCCTATAGTC-AG
31172 GATCTATTTATGTACTTT
1 GATCTATTTATGTACTTT
31190 ATCCTAATTA
Statistics
Matches: 63, Mismatches: 9, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
58 2 0.03
59 9 0.14
60 44 0.70
61 7 0.11
62 1 0.02
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (59 bp):
GATCTATTTATGTACTTTTAATAGTCGAAAAACTCAACAAAATAATACCCTATAGTCAG
Found at i:40349 original size:12 final size:13
Alignment explanation
Indices: 40332--40371 Score: 50
Period size: 12 Copynumber: 3.3 Consensus size: 13
40322 ACATTTATTT
40332 TTAAAAA-AGTAA
1 TTAAAAATAGTAA
40344 TTAAAAATAG-AA
1 TTAAAAATAGTAA
*
40356 -TAAAAATAATAA
1 TTAAAAATAGTAA
40368 TTAA
1 TTAA
40372 GATACTAAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
11 8 0.33
12 11 0.46
13 5 0.21
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.28
Consensus pattern (13 bp):
TTAAAAATAGTAA
Found at i:69122 original size:40 final size:39
Alignment explanation
Indices: 69058--69134 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 39
69048 CAACAGTTAA
*
69058 TAATGTTTATTTATTTTTAATAAAATTAAAATTAAAATT
1 TAATATTTATTTATTTTTAATAAAATTAAAATTAAAATT
** *
69097 TAATATTTATTTTATTTTTTTTAAAATTAATATTAAAA
1 TAATATTTA-TTTATTTTTAATAAAATTAAAATTAAAA
69135 AGAATATTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
39 8 0.24
40 25 0.76
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.55
Consensus pattern (39 bp):
TAATATTTATTTATTTTTAATAAAATTAAAATTAAAATT
Found at i:69141 original size:39 final size:39
Alignment explanation
Indices: 69063--69143 Score: 101
Period size: 40 Copynumber: 2.1 Consensus size: 39
69053 GTTAATAATG
**
69063 TTTATTTATTTTTAATAAAATTAAAATTAAAATTTAATA
1 TTTATTTATTTTTAATAAAATTAAAATTAAAATAGAATA
** *
69102 TTTATTTTATTTTTTTTAAAATTAATATTAAAA-AGAATA
1 TTTA-TTTATTTTTAATAAAATTAAAATTAAAATAGAATA
69141 TTT
1 TTT
69144 TAAATAAAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
39 11 0.31
40 25 0.69
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.54
Consensus pattern (39 bp):
TTTATTTATTTTTAATAAAATTAAAATTAAAATAGAATA
Found at i:69216 original size:21 final size:22
Alignment explanation
Indices: 69192--69239 Score: 64
Period size: 21 Copynumber: 2.2 Consensus size: 22
69182 TTTTATTGAA
69192 TTTTATTTAC-TTTTAATTT-TT
1 TTTTA-TTACATTTTAATTTATT
*
69213 TTTTATTACATTTTTATTTATT
1 TTTTATTACATTTTAATTTATT
69235 TTTTA
1 TTTTA
69240 AAAAATTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 4 0.17
21 13 0.54
22 7 0.29
ACGTcount: A:0.21, C:0.04, G:0.00, T:0.75
Consensus pattern (22 bp):
TTTTATTACATTTTAATTTATT
Found at i:69237 original size:10 final size:10
Alignment explanation
Indices: 69179--69237 Score: 55
Period size: 10 Copynumber: 5.7 Consensus size: 10
69169 CTTTACATTC
69179 TATTTTTATT
1 TATTTTTATT
* *
69189 GAATTTTATT
1 TATTTTTATT
*
69199 TACTTTTAATT
1 TA-TTTTTATT
*
69210 TTTTTTTATT
1 TATTTTTATT
*
69220 ACATTTTTATT
1 -TATTTTTATT
69231 TATTTTT
1 TATTTTT
69238 TAAAAAATTA
Statistics
Matches: 37, Mismatches: 10, Indels: 4
0.73 0.20 0.08
Matches are distributed among these distances:
10 22 0.59
11 15 0.41
ACGTcount: A:0.22, C:0.03, G:0.02, T:0.73
Consensus pattern (10 bp):
TATTTTTATT
Found at i:77096 original size:37 final size:37
Alignment explanation
Indices: 77046--77118 Score: 137
Period size: 37 Copynumber: 2.0 Consensus size: 37
77036 ATTAGGAAGT
*
77046 AAAATTCTAAACTTTTGTTGCTCAAAAGACGGTGGAA
1 AAAATTCTAAACTTTTGTTCCTCAAAAGACGGTGGAA
77083 AAAATTCTAAACTTTTGTTCCTCAAAAGACGGTGGA
1 AAAATTCTAAACTTTTGTTCCTCAAAAGACGGTGGA
77119 CACCATCAGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (37 bp):
AAAATTCTAAACTTTTGTTCCTCAAAAGACGGTGGAA
Found at i:82673 original size:19 final size:19
Alignment explanation
Indices: 82629--82674 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
82619 GTTTGGATCA
*
82629 AGGAATATGGGATTCCAAT
1 AGGAATGTGGGATTCCAAT
*
82648 AGGAATGTGGGATTCCCAT
1 AGGAATGTGGGATTCCAAT
82667 AGGAATGT
1 AGGAATGT
82675 AATCTACATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (19 bp):
AGGAATGTGGGATTCCAAT
Found at i:83064 original size:15 final size:15
Alignment explanation
Indices: 83027--83064 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
83017 ATTTTGTAAA
83027 AAATA-TATATATAT
1 AAATATTATATATAT
*
83041 ATATATTATATATAT
1 AAATATTATATATAT
*
83056 AAATTTTAT
1 AAATATTAT
83065 GAATTTAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
14 4 0.20
15 16 0.80
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
AAATATTATATATAT
Found at i:83270 original size:18 final size:19
Alignment explanation
Indices: 83247--83289 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 19
83237 CAGTAATCCT
*
83247 ATTCC-CTGGTAATCTTAC
1 ATTCCACTGATAATCTTAC
83265 ATTCCCACTGATAATCTTAC
1 ATT-CCACTGATAATCTTAC
83285 ATTCC
1 ATTCC
83290 GTGAACCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 3 0.14
19 4 0.18
20 15 0.68
ACGTcount: A:0.26, C:0.30, G:0.07, T:0.37
Consensus pattern (19 bp):
ATTCCACTGATAATCTTAC
Found at i:84973 original size:19 final size:20
Alignment explanation
Indices: 84929--84979 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
84919 CCATGTTCGA
*
84929 GTTGCGAATTTGAAAACTGT
1 GTTGCGAATTTGAAAACTGC
*
84949 GTTGCGAATTTGAAATC-GC
1 GTTGCGAATTTGAAAACTGC
*
84968 GTTGCGATTTTG
1 GTTGCGAATTTG
84980 TTGGTTATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 12 0.43
20 16 0.57
ACGTcount: A:0.24, C:0.12, G:0.27, T:0.37
Consensus pattern (20 bp):
GTTGCGAATTTGAAAACTGC
Found at i:85269 original size:12 final size:12
Alignment explanation
Indices: 85252--85282 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
85242 GGTGGATGGT
85252 TTGGCACTTGTG
1 TTGGCACTTGTG
85264 TTGGCACTTGTG
1 TTGGCACTTGTG
85276 TTGGCAC
1 TTGGCAC
85283 GTGGTTTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.10, C:0.19, G:0.32, T:0.39
Consensus pattern (12 bp):
TTGGCACTTGTG
Found at i:89177 original size:36 final size:35
Alignment explanation
Indices: 89129--89214 Score: 100
Period size: 36 Copynumber: 2.4 Consensus size: 35
89119 AACTTGAAAC
** *
89129 CCTTTAACTACTAAGGTAACTGAGATAACAAACAT
1 CCTTTAACTACTAAGACAACAGAGATAACAAACAT
* * *
89164 CTCTTTAACTACTAAGACAGCAGATATAACAAGCAT
1 C-CTTTAACTACTAAGACAACAGAGATAACAAACAT
89200 CCATTTAACTACTAA
1 CC-TTTAACTACTAA
89215 AGTAGCTTAG
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
35 2 0.05
36 41 0.95
ACGTcount: A:0.42, C:0.22, G:0.09, T:0.27
Consensus pattern (35 bp):
CCTTTAACTACTAAGACAACAGAGATAACAAACAT
Found at i:89491 original size:29 final size:31
Alignment explanation
Indices: 89455--89521 Score: 102
Period size: 31 Copynumber: 2.2 Consensus size: 31
89445 ATTTTGTTTC
*
89455 ATCATTAAAGTT-TCAAAAA-TTATAAAATG
1 ATCATTAAACTTCTCAAAAAGTTATAAAATG
*
89484 ATTATTAAACTTCTCAAAAAGTTATAAAATG
1 ATCATTAAACTTCTCAAAAAGTTATAAAATG
89515 ATCATTA
1 ATCATTA
89522 TAATTTATTA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
29 10 0.30
30 7 0.21
31 16 0.48
ACGTcount: A:0.49, C:0.09, G:0.06, T:0.36
Consensus pattern (31 bp):
ATCATTAAACTTCTCAAAAAGTTATAAAATG
Found at i:93827 original size:14 final size:14
Alignment explanation
Indices: 93808--93834 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
93798 AACCCCAATC
93808 TTCTTCTTCTTTCT
1 TTCTTCTTCTTTCT
93822 TTCTTCTTCTTTC
1 TTCTTCTTCTTTC
93835 CATGTGTGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (14 bp):
TTCTTCTTCTTTCT
Found at i:102073 original size:21 final size:21
Alignment explanation
Indices: 102048--102098 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 21
102038 TAAATATGTA
* *
102048 TTTAATAATTTGATTTTTATT
1 TTTAATAATTTGATATCTATT
*
102069 TTTAAT-ATTTTATATCTATT
1 TTTAATAATTTGATATCTATT
*
102089 TTTTATAATT
1 TTTAATAATT
102099 GTATATTTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
20 16 0.64
21 9 0.36
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (21 bp):
TTTAATAATTTGATATCTATT
Found at i:102121 original size:13 final size:15
Alignment explanation
Indices: 102089--102125 Score: 51
Period size: 13 Copynumber: 2.6 Consensus size: 15
102079 TATATCTATT
*
102089 TTTTATAATTGTATA
1 TTTTAAAATTGTATA
102104 TTTTAAAATT-TA-A
1 TTTTAAAATTGTATA
102117 TTTTAAAAT
1 TTTTAAAAT
102126 ATTTTTGAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 10 0.48
14 2 0.10
15 9 0.43
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.57
Consensus pattern (15 bp):
TTTTAAAATTGTATA
Found at i:114891 original size:5 final size:5
Alignment explanation
Indices: 114881--114924 Score: 54
Period size: 5 Copynumber: 8.6 Consensus size: 5
114871 CGTTTAAATA
*
114881 TTTAT TTTAT TTTAT TTTA- GTTAT TCTTAT TCTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT T-TTAT T-TTAT TTTAT TTT
114925 TTAACTAACC
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
4 3 0.09
5 21 0.60
6 11 0.31
ACGTcount: A:0.18, C:0.05, G:0.02, T:0.75
Consensus pattern (5 bp):
TTTAT
Found at i:118728 original size:22 final size:22
Alignment explanation
Indices: 118710--118758 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
118700 CCATCAATCT
*
118710 TTTGAGCATCCAATGTCAAACC
1 TTTGAGCATCAAATGTCAAACC
*
118732 TTTGAGCATCAAATGCCAAACC
1 TTTGAGCATCAAATGTCAAACC
118754 TTTGA
1 TTTGA
118759 CCAAACACAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (22 bp):
TTTGAGCATCAAATGTCAAACC
Found at i:119198 original size:18 final size:18
Alignment explanation
Indices: 119163--119198 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
119153 CAACATCAAA
**
119163 ATATTGGGGCATTTTTGG
1 ATATTGGGGCATCGTTGG
119181 ATATTGGGGCATCGTTGG
1 ATATTGGGGCATCGTTGG
119199 GGATTCAACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.17, C:0.08, G:0.36, T:0.39
Consensus pattern (18 bp):
ATATTGGGGCATCGTTGG
Found at i:119794 original size:36 final size:36
Alignment explanation
Indices: 119727--119796 Score: 95
Period size: 36 Copynumber: 1.9 Consensus size: 36
119717 CTTAAAACAA
* ** *
119727 TTTGTCTCCCTTGAGACAGTTTCTTTTGAAACAAAT
1 TTTGTCTCCCATGAGACAGTTTCGCTCGAAACAAAT
*
119763 TTTGTCTCCCATGAGGCAGTTTCGCTCGAAACAA
1 TTTGTCTCCCATGAGACAGTTTCGCTCGAAACAA
119797 CACAATGTGC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 29 1.00
ACGTcount: A:0.24, C:0.23, G:0.17, T:0.36
Consensus pattern (36 bp):
TTTGTCTCCCATGAGACAGTTTCGCTCGAAACAAAT
Found at i:120236 original size:63 final size:63
Alignment explanation
Indices: 120135--120310 Score: 234
Period size: 63 Copynumber: 2.8 Consensus size: 63
120125 TATTGGAACT
*
120135 CAAGACAACACAAGTTCAACTTTACAACGAAGGGCCGCTGGTTGTTAACAAAATTTCCCAGTA
1 CAAGACAACACAAGTTCAACTTCACAACGAAGGGCCGCTGGTTGTTAACAAAATTTCCCAGTA
* * *
120198 CCAGACAACACAAGTTCAACTTCAC-ACGAAGTGGCCGCTGGTTG-TCACAAAATTTCCCAGTT
1 CAAGACAACACAAGTTCAACTTCACAACGAAG-GGCCGCTGGTTGTTAACAAAATTTCCCAGTA
* * * *
120260 TAAG-CAGCAC-AGTTCAACTTCACAACGAAGGGGCCGCTGGCTGTCAACAAA
1 CAAGACAACACAAGTTCAACTTCACAACGAA-GGGCCGCTGGTTGTTAACAAA
120311 CAACTTCCCA
Statistics
Matches: 99, Mismatches: 10, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
60 13 0.13
61 21 0.21
62 30 0.30
63 35 0.35
ACGTcount: A:0.34, C:0.27, G:0.19, T:0.20
Consensus pattern (63 bp):
CAAGACAACACAAGTTCAACTTCACAACGAAGGGCCGCTGGTTGTTAACAAAATTTCCCAGTA
Found at i:120351 original size:62 final size:60
Alignment explanation
Indices: 120143--120352 Score: 174
Period size: 62 Copynumber: 3.4 Consensus size: 60
120133 CTCAAGACAA
* * * * * *** *
120143 CACAAGTTCAACTTTACAACGAA-GGGCCGCTGGTTGTTAACAAAATTTCCCAGTACCAGACAA
1 CACAA-TTCAACTTCAC-ACGAAGGGGCCGCTGGCTG-TCACAAAACTTCCCAATTTAAG-CAG
* * * *
120206 CACAAGTTCAACTTCACACGAAGTGGCCGCTGGTTGTCACAAAATTTCCCAGTTTAAGCAG
1 CACAA-TTCAACTTCACACGAAGGGGCCGCTGGCTGTCACAAAACTTCCCAATTTAAGCAG
* *
120267 CACAGTTCAACTTCACAACGAAGGGGCCGCTGGCTGTCAACAAACAACTTCCCAATTTCAG-AG
1 CACAATTCAACTTCAC-ACGAAGGGGCCGCTGGCTGTC-AC-AA-AACTTCCCAATTTAAGCAG
120330 C-CAATTCAACTTCACAGCGAAGG
1 CACAATTCAACTTCACA-CGAAGG
120353 ATATTGGACT
Statistics
Matches: 127, Mismatches: 14, Indels: 13
0.82 0.09 0.08
Matches are distributed among these distances:
60 11 0.09
61 26 0.20
62 44 0.35
63 33 0.26
64 13 0.10
ACGTcount: A:0.32, C:0.28, G:0.19, T:0.21
Consensus pattern (60 bp):
CACAATTCAACTTCACACGAAGGGGCCGCTGGCTGTCACAAAACTTCCCAATTTAAGCAG
Found at i:122113 original size:11 final size:10
Alignment explanation
Indices: 122090--122138 Score: 71
Period size: 11 Copynumber: 4.6 Consensus size: 10
122080 TACGTTTAAA
122090 TATTTTATTT
1 TATTTTATTT
122100 TATTTTATTTT
1 TATTTTA-TTT
122111 TATTTTATTCT
1 TATTTTATT-T
122122 TATTCTTATTT
1 TATT-TTATTT
122133 TATTTT
1 TATTTT
122139 TTAACTAACC
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
10 11 0.31
11 20 0.56
12 5 0.14
ACGTcount: A:0.18, C:0.04, G:0.00, T:0.78
Consensus pattern (10 bp):
TATTTTATTT
Found at i:122139 original size:6 final size:5
Alignment explanation
Indices: 122090--122138 Score: 71
Period size: 5 Copynumber: 9.2 Consensus size: 5
122080 TACGTTTAAA
122090 TATTT TATTT TATTT TATTTT TATTT TATTCT TATTCT TATTT TATTT
1 TATTT TATTT TATTT TA-TTT TATTT TATT-T TATT-T TATTT TATTT
122138 T
1 T
122139 TTAACTAACC
Statistics
Matches: 42, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
5 26 0.62
6 16 0.38
ACGTcount: A:0.18, C:0.04, G:0.00, T:0.78
Consensus pattern (5 bp):
TATTT
Found at i:122195 original size:28 final size:24
Alignment explanation
Indices: 122162--122218 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 24
122152 TTAATTTTTA
*
122162 TTTTATTCATTTTATTTTCTTCTTCTT
1 TTTTATT-ATTTT-TTTTATT-TTCTT
122189 TCTTTATTATTTTTTTTATTTTCTT
1 T-TTTATTATTTTTTTTATTTTCTT
122214 TTTTA
1 TTTTA
122219 CTACTTTTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
24 4 0.14
25 6 0.21
26 6 0.21
27 6 0.21
28 6 0.21
ACGTcount: A:0.12, C:0.11, G:0.00, T:0.77
Consensus pattern (24 bp):
TTTTATTATTTTTTTTATTTTCTT
Found at i:126764 original size:21 final size:22
Alignment explanation
Indices: 126740--126780 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
126730 ACATATGATG
126740 TAAAATAA-AACATTTACAACA
1 TAAAATAACAACATTTACAACA
*
126761 TAAAATAACAATATTTACAA
1 TAAAATAACAACATTTACAA
126781 TATGTGCATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.61, C:0.12, G:0.00, T:0.27
Consensus pattern (22 bp):
TAAAATAACAACATTTACAACA
Found at i:126997 original size:27 final size:27
Alignment explanation
Indices: 126941--126999 Score: 68
Period size: 26 Copynumber: 2.2 Consensus size: 27
126931 TAAAATGGCC
* *
126941 AAAACATAAATTTAATGGCTAAAAGTA
1 AAAACATAAATTTAAGGGCTAAAAGAA
*
126968 AAAACAT-AATTTAAGGGTCT-AAATAA
1 AAAACATAAATTTAAGGG-CTAAAAGAA
126994 AAAACA
1 AAAACA
127000 GAAACTTGAG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 19 0.68
27 9 0.32
ACGTcount: A:0.58, C:0.08, G:0.10, T:0.24
Consensus pattern (27 bp):
AAAACATAAATTTAAGGGCTAAAAGAA
Found at i:127045 original size:28 final size:28
Alignment explanation
Indices: 126986--127045 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 28
126976 ATTTAAGGGT
** *
126986 CTAAATAAAAAACAGAAACTTGAGGGGA
1 CTAAATAAAAAACAGAAACTTGAAAGAA
127014 -TAAATAAATAAACAGAAACTT-AAAGAA
1 CTAAATAAA-AAACAGAAACTTGAAAGAA
127041 CTAAA
1 CTAAA
127046 ATGGTATTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
27 11 0.41
28 16 0.59
ACGTcount: A:0.60, C:0.10, G:0.13, T:0.17
Consensus pattern (28 bp):
CTAAATAAAAAACAGAAACTTGAAAGAA
Found at i:128674 original size:11 final size:11
Alignment explanation
Indices: 128649--128693 Score: 58
Period size: 11 Copynumber: 4.2 Consensus size: 11
128639 TATATGTAAC
128649 ATAAT-TAATA
1 ATAATATAATA
*
128659 CTAATATAATA
1 ATAATATAATA
128670 ATAATA-ACATA
1 ATAATATA-ATA
128681 ATAATATAATA
1 ATAATATAATA
128692 AT
1 AT
128694 TAAAAAAAGA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
10 5 0.17
11 24 0.80
12 1 0.03
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (11 bp):
ATAATATAATA
Found at i:128681 original size:14 final size:14
Alignment explanation
Indices: 128645--128686 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
128635 AATATATATG
*
128645 TAACATAATTAATAC
1 TAACATAA-TAATAA
*
128660 TAATATAATAATAA
1 TAACATAATAATAA
128674 TAACATAATAATA
1 TAACATAATAATA
128687 TAATAATTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
14 17 0.71
15 7 0.29
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (14 bp):
TAACATAATAATAA
Found at i:129193 original size:31 final size:31
Alignment explanation
Indices: 129155--129231 Score: 86
Period size: 29 Copynumber: 2.5 Consensus size: 31
129145 CAAAGGAATG
* * *
129155 ACTCAAAGATTGTTTTGTTTTAATAGAAACA
1 ACTCAAAGATTGTTTTGCTTCAAGAGAAACA
*
129186 ACTCAAAGA--CTTTTGCTTCAAGAGAAACA
1 ACTCAAAGATTGTTTTGCTTCAAGAGAAACA
*
129215 ACTCAAGATATTGTTTT
1 ACTCAA-AGATTGTTTT
129232 AAGAGACAAA
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
29 22 0.59
30 2 0.05
31 9 0.24
32 4 0.11
ACGTcount: A:0.38, C:0.14, G:0.13, T:0.35
Consensus pattern (31 bp):
ACTCAAAGATTGTTTTGCTTCAAGAGAAACA
Found at i:129506 original size:28 final size:30
Alignment explanation
Indices: 129466--129536 Score: 83
Period size: 30 Copynumber: 2.4 Consensus size: 30
129456 ACGAAATCCG
* * * *
129466 TTTCAAGGGAAAC-GACTCAATGGTTT-TA
1 TTTCAAGAGAAACAAACTCAAAGATTTGTA
129494 TTTCAAGAGAAACAAACTCAAAGATTTGTA
1 TTTCAAGAGAAACAAACTCAAAGATTTGTA
*
129524 TTTCTAGAGAAAC
1 TTTCAAGAGAAAC
129537 TGCTTCAAGG
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
28 12 0.33
29 10 0.28
30 14 0.39
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (30 bp):
TTTCAAGAGAAACAAACTCAAAGATTTGTA
Found at i:129724 original size:29 final size:30
Alignment explanation
Indices: 129682--129738 Score: 107
Period size: 29 Copynumber: 1.9 Consensus size: 30
129672 GAGATAAAAT
129682 TTTGTTTCAAAAGAAAC-ACTCAAAGATCC
1 TTTGTTTCAAAAGAAACGACTCAAAGATCC
129711 TTTGTTTCAAAAGAAACGACTCAAAGAT
1 TTTGTTTCAAAAGAAACGACTCAAAGAT
129739 GATGGTTTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
29 17 0.63
30 10 0.37
ACGTcount: A:0.42, C:0.18, G:0.12, T:0.28
Consensus pattern (30 bp):
TTTGTTTCAAAAGAAACGACTCAAAGATCC
Found at i:129746 original size:29 final size:29
Alignment explanation
Indices: 129685--129746 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 29
129675 ATAAAATTTT
* *
129685 GTTTCAAAAGAAACACTCAAAGATCCTTT
1 GTTTCAAAAGAAACACTCAAAGATCCATG
*
129714 GTTTCAAAAGAAACGACTCAAAGAT-GATG
1 GTTTCAAAAGAAAC-ACTCAAAGATCCATG
129743 GTTT
1 GTTT
129747 GTTTCCAGGC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 19 0.66
30 10 0.34
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (29 bp):
GTTTCAAAAGAAACACTCAAAGATCCATG
Found at i:129863 original size:20 final size:20
Alignment explanation
Indices: 129827--129864 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
129817 GAGAATTGTC
*
129827 TCAAGAGATACAAATTCATT
1 TCAAGAGATAAAAATTCATT
129847 TCAAGAGA-AAAAGATTCA
1 TCAAGAGATAAAA-ATTCA
129865 AAGACTGTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.50, C:0.13, G:0.13, T:0.24
Consensus pattern (20 bp):
TCAAGAGATAAAAATTCATT
Found at i:130856 original size:24 final size:24
Alignment explanation
Indices: 130820--130884 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 24
130810 CTTGTATTTT
*
130820 CAAAAG-TATGAAAATATCAATTAA
1 CAAAAGTTTTGAAAATAT-AATTAA
* *
130844 -AAGAGTTTTGAAAA-ATATTTAA
1 CAAAAGTTTTGAAAATATAATTAA
130866 TCAAAAGTTTTGAAAATAT
1 -CAAAAGTTTTGAAAATAT
130885 TGCCCCTTTC
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
22 5 0.15
23 6 0.18
24 20 0.61
25 2 0.06
ACGTcount: A:0.52, C:0.05, G:0.11, T:0.32
Consensus pattern (24 bp):
CAAAAGTTTTGAAAATATAATTAA
Found at i:131769 original size:19 final size:19
Alignment explanation
Indices: 131731--131765 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
131721 TTGTCATCTT
131731 TTTGTTCTTTGCTCTTTTC
1 TTTGTTCTTTGCTCTTTTC
131750 TTTGTT-TTTGCT-TTTT
1 TTTGTTCTTTGCTCTTTT
131766 TTCTCTTCGC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 6 0.38
19 6 0.38
ACGTcount: A:0.00, C:0.14, G:0.11, T:0.74
Consensus pattern (19 bp):
TTTGTTCTTTGCTCTTTTC
Found at i:132437 original size:27 final size:25
Alignment explanation
Indices: 132393--132444 Score: 59
Period size: 27 Copynumber: 2.0 Consensus size: 25
132383 AGAAAGAATG
*
132393 TTCAAAGTCTCAAGGAAAATGCAATAT
1 TTCAAAGTCTCAAAG-AAATG-AATAT
* *
132420 TTCAAGGTCTTAAAGAAATGAATAT
1 TTCAAAGTCTCAAAGAAATGAATAT
132445 CACAATTTGG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 5 0.23
26 5 0.23
27 12 0.55
ACGTcount: A:0.44, C:0.12, G:0.15, T:0.29
Consensus pattern (25 bp):
TTCAAAGTCTCAAAGAAATGAATAT
Found at i:134907 original size:283 final size:278
Alignment explanation
Indices: 134390--134950 Score: 1036
Period size: 283 Copynumber: 2.0 Consensus size: 278
134380 GTATGTATCC
134390 CATGGGTTAATTGCTAAACTCATACGAAGAATAAATTCTTACGAGAGTAAGCATCACCCTGACTA
1 CATGGGTTAATTGCTAAACTCATACGAAGAATAAATTCTTACGAGAGTAAGCATCACCCTGACTA
*
134455 ATTTGGATCAAAGCTCGTGTCTATAGCTCATGTTATGCAAATGCAGTGATGTGTGGAGGAGAACG
66 ATTTGGATCAAAGCTCGTGTCTAGAGCTCATGTTATGCAAATGCAGTGATGTGTGGAGGAGAACG
134520 TACCTAACCTTTGACTCAAAAATGGAAATAAAAACTCGACAAAAACTTGGACAATCTGAAAAGCC
131 TACCTAACCTTTGACTCAAAAATGGAAATAAAAACTCGACAAAAACTTGGACAATCTGAAAAGCC
134585 AAAATTAAAATGTTAGTATGAAAATTAAAATGAAGCAATTAAAAACTTC-ATAAACGGATCATAA
196 AAAATTAAAATGTTAGTATGAAAATTAAAATGAAGCAATTAAAAACTTCAATAAACGGATCATAA
134649 GTTAACTAAAGACCCGAA
261 GTTAACTAAAGACCCGAA
134667 CATGGGTTAATTGCTAAAACTCATACGAAGAATAAATTCTTACGAGAGTAAAGCAATCACCCTGA
1 CATGGGTTAATTGCT-AAACTCATACGAAGAATAAATTCTTACGAGAGT-AAGC-ATCACCCTGA
134732 CTAATTTGGATCAAAGCTCGTGTCTAGAGCTCATGTTATGCAAATGCAGTGATGTGTGTGAGGAG
63 CTAATTTGGATCAAAGCTCGTGTCTAGAGCTCATGTTATGCAAATGCAGTGATGTGTG-GAGGA-
134797 GAACGTACCT-ACCTTTGACTCAAAAAATGGAAAATAAAAACTCGACAAAAACTTGGACAATCTG
126 GAACGTACCTAACCTTTGACTC-AAAAATGG-AAATAAAAACTCGACAAAAACTTGGACAATCTG
134861 AAAAGCCAAAATTAAAATGTTAGTATGAAAATTAAAATGAAGCAATTAAAAACTTCAATAAACGG
189 AAAAGCCAAAATTAAAATGTTAGTATGAAAATTAAAATGAAGCAATTAAAAACTTCAATAAACGG
134926 ATCATAAGTTAACTAAAGACCCGAA
254 ATCATAAGTTAACTAAAGACCCGAA
134951 TTAATAATTT
Statistics
Matches: 275, Mismatches: 1, Indels: 9
0.96 0.00 0.03
Matches are distributed among these distances:
277 15 0.05
278 33 0.12
279 4 0.01
280 67 0.24
281 16 0.06
282 18 0.07
283 89 0.32
284 33 0.12
ACGTcount: A:0.42, C:0.16, G:0.17, T:0.25
Consensus pattern (278 bp):
CATGGGTTAATTGCTAAACTCATACGAAGAATAAATTCTTACGAGAGTAAGCATCACCCTGACTA
ATTTGGATCAAAGCTCGTGTCTAGAGCTCATGTTATGCAAATGCAGTGATGTGTGGAGGAGAACG
TACCTAACCTTTGACTCAAAAATGGAAATAAAAACTCGACAAAAACTTGGACAATCTGAAAAGCC
AAAATTAAAATGTTAGTATGAAAATTAAAATGAAGCAATTAAAAACTTCAATAAACGGATCATAA
GTTAACTAAAGACCCGAA
Found at i:135842 original size:21 final size:21
Alignment explanation
Indices: 135818--135857 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
135808 ACATATGATG
135818 TAAAATAA-AACATTTACAACA
1 TAAAA-AACAACATTTACAACA
*
135839 TAAAAAACAATATTTACAA
1 TAAAAAACAACATTTACAA
135858 ATGTGCATAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 2 0.12
21 15 0.88
ACGTcount: A:0.62, C:0.12, G:0.00, T:0.25
Consensus pattern (21 bp):
TAAAAAACAACATTTACAACA
Found at i:136026 original size:29 final size:29
Alignment explanation
Indices: 135994--136055 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 29
135984 GTACAAATAG
* *
135994 AATTTAAA-GGACTAAATGGCCAAAACATA
1 AATTTAAATGG-CTAAATAGCAAAAACATA
*
136023 AATTTAAATGGCTAAATAGTAAAAACATA
1 AATTTAAATGGCTAAATAGCAAAAACATA
136052 AATT
1 AATT
136056 AAGGGTCTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 27 0.93
30 2 0.07
ACGTcount: A:0.53, C:0.10, G:0.11, T:0.26
Consensus pattern (29 bp):
AATTTAAATGGCTAAATAGCAAAAACATA
Found at i:136065 original size:28 final size:27
Alignment explanation
Indices: 136015--136100 Score: 79
Period size: 27 Copynumber: 3.1 Consensus size: 27
136005 CTAAATGGCC
* *
136015 AAAACATAAATTTAAATGGCTAAATAGTA
1 AAAACATAAACTT-AAGGGCTAAATA-TA
136044 AAAACATAAA-TTAAGGGTCTAAATA-A
1 AAAACATAAACTTAAGGG-CTAAATATA
* *
136070 AAAACAGAAACTTGAGGGGCTAAA-ATA
1 AAAACATAAACTT-AAGGGCTAAATATA
136097 AAAA
1 AAAA
136101 AAAAAAAGAA
Statistics
Matches: 50, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
26 11 0.22
27 16 0.32
28 13 0.26
29 10 0.20
ACGTcount: A:0.57, C:0.08, G:0.14, T:0.21
Consensus pattern (27 bp):
AAAACATAAACTTAAGGGCTAAATATA
Found at i:136099 original size:26 final size:26
Alignment explanation
Indices: 136032--136101 Score: 77
Period size: 28 Copynumber: 2.5 Consensus size: 26
136022 AAATTTAAAT
*
136032 GGCTAAATAGTAAAAACATAAATTAAGG
1 GGCTAAATA--AAAAACAGAAATTAAGG
* *
136060 GTCTAAATAAAAAACAGAAACTTGAGG
1 GGCTAAATAAAAAACAGAAA-TTAAGG
136087 GGCTAAAATAAAAAA
1 GGCT-AAATAAAAAA
136102 AAAAAAGAAC
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
26 10 0.28
27 8 0.22
28 18 0.50
ACGTcount: A:0.56, C:0.09, G:0.17, T:0.19
Consensus pattern (26 bp):
GGCTAAATAAAAAACAGAAATTAAGG
Found at i:137753 original size:3 final size:3
Alignment explanation
Indices: 137740--137789 Score: 59
Period size: 3 Copynumber: 16.3 Consensus size: 3
137730 TATATGTAAC
137740 ATA ATTA ATA ATA ATA ATA ATA A-A CATA A-A CATA ATA ATA ATA ATA
1 ATA A-TA ATA ATA ATA ATA ATA ATA -ATA ATA -ATA ATA ATA ATA ATA
137786 ATA A
1 ATA A
137790 ATTGAAAAAA
Statistics
Matches: 42, Mismatches: 0, Indels: 10
0.81 0.00 0.19
Matches are distributed among these distances:
2 2 0.05
3 35 0.83
4 5 0.12
ACGTcount: A:0.66, C:0.04, G:0.00, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:143832 original size:21 final size:20
Alignment explanation
Indices: 143808--143849 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
143798 GTCATGCAAC
*
143808 TAATAATAGTTGTATAATGCA
1 TAATAATAGTT-CATAATGCA
*
143829 TAATAATGGTTCATAATGCA
1 TAATAATAGTTCATAATGCA
143849 T
1 T
143850 TGTAAGCTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.40, C:0.07, G:0.14, T:0.38
Consensus pattern (20 bp):
TAATAATAGTTCATAATGCA
Found at i:148420 original size:20 final size:20
Alignment explanation
Indices: 148395--148433 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
148385 CAAGTGGGAG
148395 ATTATTAGTTGTCATGCAAA
1 ATTATTAGTTGTCATGCAAA
148415 ATTATTAGTTGTCATGCAA
1 ATTATTAGTTGTCATGCAA
148434 CTAATAATAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.41
Consensus pattern (20 bp):
ATTATTAGTTGTCATGCAAA
Found at i:148459 original size:21 final size:20
Alignment explanation
Indices: 148435--148476 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
148425 GTCATGCAAC
*
148435 TAATAATAGTTGTATAATGCA
1 TAATAATAGTT-CATAATGCA
*
148456 TAATAATGGTTCATAATGCA
1 TAATAATAGTTCATAATGCA
148476 T
1 T
148477 TGTAAGTTGG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.40, C:0.07, G:0.14, T:0.38
Consensus pattern (20 bp):
TAATAATAGTTCATAATGCA
Found at i:154656 original size:20 final size:20
Alignment explanation
Indices: 154631--154864 Score: 116
Period size: 20 Copynumber: 11.6 Consensus size: 20
154621 GATTTTCCAG
*
154631 AATCGCAACGCGGATATGAA
1 AATCGCAACGCGTATATGAA
* *
154651 AATCGCAACGCGAACAT-ATA
1 AATCGCAACGCGTATATGA-A
* *
154671 AATCGCAACGCG-ATTCTGAC
1 AATCGCAACGCGTA-TATGAA
* *
154691 TATCGCAACGAGTATCCAT-AA
1 AATCGCAACGCGTAT--ATGAA
** *
154712 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATATGAA
* * * *
154732 AATCGCAACGAGAATACGTA
1 AATCGCAACGCGTATATGAA
* *
154752 AATCGCAACGCGTATCTGTA
1 AATCGCAACGCGTATATGAA
* * * *
154772 AATCGCAACGAGAATACGTA
1 AATCGCAACGCGTATATGAA
* ** *
154792 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATATGAA
* *
154812 AATCGCAACGAC-AATACGTAA
1 AATCGCAACG-CGTATATG-AA
* ** *
154833 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATATGAA
154853 AATCGCAACGCG
1 AATCGCAACGCG
154865 ATTTTTAAAG
Statistics
Matches: 166, Mismatches: 38, Indels: 20
0.74 0.17 0.09
Matches are distributed among these distances:
19 2 0.01
20 132 0.80
21 31 0.19
22 1 0.01
ACGTcount: A:0.37, C:0.25, G:0.19, T:0.19
Consensus pattern (20 bp):
AATCGCAACGCGTATATGAA
Found at i:154680 original size:40 final size:40
Alignment explanation
Indices: 154631--154862 Score: 180
Period size: 40 Copynumber: 5.8 Consensus size: 40
154621 GATTTTCCAG
* * *
154631 AATCGCAACGCGGATATGAAAATCGCAACGCGAACATATA
1 AATCGCAACGCGGATCTGAAAATCGCAACGAGAACACATA
** *
154671 AATCGCAACGC-GATTCTGACTATCGCAACGAGTATC-CATAA
1 AATCGCAACGCGGA-TCTGAAAATCGCAACGAG-AACACAT-A
* * * * *
154712 AATCGCAACGCGTATCCGTAAATCGCAACGAGAATACGTA
1 AATCGCAACGCGGATCTGAAAATCGCAACGAGAACACATA
* * * *
154752 AATCGCAACGCGTATCTGTAAATCGCAACGAGAATACGTA
1 AATCGCAACGCGGATCTGAAAATCGCAACGAGAACACATA
* * * * * * *
154792 AATCGCAATGCGTATCCGTAAATCGCAACGACAATACGTAA
1 AATCGCAACGCGGATCTGAAAATCGCAACGAGAACACAT-A
* * * *
154833 AATCGCAATGCGTATCCGTAAATCGCAACG
1 AATCGCAACGCGGATCTGAAAATCGCAACG
154863 CGATTTTTAA
Statistics
Matches: 168, Mismatches: 18, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
39 2 0.01
40 104 0.62
41 61 0.36
42 1 0.01
ACGTcount: A:0.38, C:0.25, G:0.19, T:0.19
Consensus pattern (40 bp):
AATCGCAACGCGGATCTGAAAATCGCAACGAGAACACATA
Found at i:154777 original size:81 final size:80
Alignment explanation
Indices: 154631--154862 Score: 270
Period size: 81 Copynumber: 2.9 Consensus size: 80
154621 GATTTTCCAG
* ** * * * ** *
154631 AATCGCAACGCGGATATGAAAATCGCAACGCGAACATATAAATCGCAACGCG-ATTCTG-ACTAT
1 AATCGCAACGCGTATCCGTAAATCGCAACGAGAATACGTAAATCGCAACGCGTA-TCTGTA-AAT
* *
154694 CGCAACGAGTATCCATAA
64 CGCAACGAGAATACAT-A
154712 AATCGCAACGCGTATCCGTAAATCGCAACGAGAATACGTAAATCGCAACGCGTATCTGTAAATCG
1 AATCGCAACGCGTATCCGTAAATCGCAACGAGAATACGTAAATCGCAACGCGTATCTGTAAATCG
*
154777 CAACGAGAATACGTA
66 CAACGAGAATACATA
* * * *
154792 AATCGCAATGCGTATCCGTAAATCGCAACGACAATACGTAAAATCGCAATGCGTATCCGTAAATC
1 AATCGCAACGCGTATCCGTAAATCGCAACGAGAATACGT-AAATCGCAACGCGTATCTGTAAATC
154857 GCAACG
65 GCAACG
154863 CGATTTTTAA
Statistics
Matches: 132, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
80 38 0.29
81 92 0.70
82 2 0.02
ACGTcount: A:0.38, C:0.25, G:0.19, T:0.19
Consensus pattern (80 bp):
AATCGCAACGCGTATCCGTAAATCGCAACGAGAATACGTAAATCGCAACGCGTATCTGTAAATCG
CAACGAGAATACATA
Found at i:154833 original size:60 final size:61
Alignment explanation
Indices: 154692--154862 Score: 188
Period size: 60 Copynumber: 2.8 Consensus size: 61
154682 GATTCTGACT
**
154692 ATCGCAACG-AGTATCCATAAAATCGCAACGCGTATCCGTAAATCGCAACGAGAATACGTAA
1 ATCGCAACGCA-TATCTGTAAAATCGCAACGCGTATCCGTAAATCGCAACGAGAATACGTAA
* * * * * * * *
154753 ATCGCAACGCGTATCTGT-AAATCGCAACGAGAATACGTAAATCGCAATGCGTATCCGTAA
1 ATCGCAACGCATATCTGTAAAATCGCAACGCGTATCCGTAAATCGCAACGAGAATACGTAA
*
154813 ATCGCAACGACA-ATAC-GTAAAATCGCAATGCGTATCCGTAAATCGCAACG
1 ATCGCAACG-CATAT-CTGTAAAATCGCAACGCGTATCCGTAAATCGCAACG
154863 CGATTTTTAA
Statistics
Matches: 90, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
60 48 0.53
61 42 0.47
ACGTcount: A:0.37, C:0.25, G:0.19, T:0.19
Consensus pattern (61 bp):
ATCGCAACGCATATCTGTAAAATCGCAACGCGTATCCGTAAATCGCAACGAGAATACGTAA
Found at i:155438 original size:21 final size:21
Alignment explanation
Indices: 155377--155455 Score: 101
Period size: 20 Copynumber: 3.9 Consensus size: 21
155367 TTCTAAACTT
155377 AAAATCGCAAC-ATGA-AAATG
1 AAAATCGCAACGA-GAGAAATG
*
155397 AAAATCGCAACAAGA-AAATG
1 AAAATCGCAACGAGAGAAATG
**
155417 ACTATCGCAACGAGAGAAATG
1 AAAATCGCAACGAGAGAAATG
155438 AAAATCGCAACGAGAGAA
1 AAAATCGCAACGAGAGAA
155456 TCGCAACGCG
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
20 30 0.58
21 22 0.42
ACGTcount: A:0.53, C:0.16, G:0.19, T:0.11
Consensus pattern (21 bp):
AAAATCGCAACGAGAGAAATG
Found at i:155473 original size:33 final size:33
Alignment explanation
Indices: 155432--155512 Score: 126
Period size: 33 Copynumber: 2.5 Consensus size: 33
155422 CGCAACGAGA
155432 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
* *
155465 GAAATGAAAATCGCAATGAGATAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
**
155498 GAAACCAAAATCGCA
1 GAAATGAAAATCGCA
155513 TTGCGATTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.47, C:0.21, G:0.21, T:0.11
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:155578 original size:20 final size:20
Alignment explanation
Indices: 155513--155601 Score: 68
Period size: 20 Copynumber: 4.8 Consensus size: 20
155503 CAAAATCGCA
155513 TTGCGATTTTCATTT-CGCG
1 TTGCGATTTTCATTTCCGCG
*
155532 TTGCGA--TTC---T-CTCG
1 TTGCGATTTTCATTTCCGCG
**
155546 TTGCGATAGTCATTTCCGCG
1 TTGCGATTTTCATTTCCGCG
**
155566 TTGCGATTTTCA-TTCTCTTG
1 TTGCGATTTTCATTTC-CGCG
155586 TTGCGATTTTCATTTC
1 TTGCGATTTTCATTTC
155602 AACCAAAAGA
Statistics
Matches: 55, Mismatches: 7, Indels: 14
0.72 0.09 0.18
Matches are distributed among these distances:
14 10 0.18
16 2 0.04
17 3 0.05
19 10 0.18
20 27 0.49
21 3 0.05
ACGTcount: A:0.11, C:0.22, G:0.19, T:0.47
Consensus pattern (20 bp):
TTGCGATTTTCATTTCCGCG
Found at i:155955 original size:42 final size:41
Alignment explanation
Indices: 155879--156001 Score: 115
Period size: 42 Copynumber: 3.0 Consensus size: 41
155869 GACTCGCATG
* * * * *
155879 TCATCCCTCAAGAGTCCACTCCTATCGTTGAAGAGGCCCCTA
1 TCATCCTTGAAGAGTCC-CTCCCACCGTTCAAGAGGCCCCTA
* *
155921 TCATTCCTTG-AGAGTCCTCTCCCACCGTTCAAGAGGCCACTG
1 TCA-TCCTTGAAGAGTCC-CTCCCACCGTTCAAGAGGCCCCTA
* *
155963 TCATCGTTGAAGAGGTCCCTCCCACCATTCAAGA-GCCCC
1 TCATCCTTGAAGA-GTCCCTCCCACCGTTCAAGAGGCCCC
156002 GATTCACATG
Statistics
Matches: 67, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
41 9 0.13
42 50 0.75
43 8 0.12
ACGTcount: A:0.22, C:0.37, G:0.18, T:0.24
Consensus pattern (41 bp):
TCATCCTTGAAGAGTCCCTCCCACCGTTCAAGAGGCCCCTA
Found at i:157500 original size:19 final size:19
Alignment explanation
Indices: 157478--157536 Score: 65
Period size: 19 Copynumber: 3.4 Consensus size: 19
157468 AAAAATGACT
157478 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
157497 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
*
157511 ATCGCAATGCGAAATTAAA
1 ATCGCAATGCGAAATGAAA
157530 ATCGCAA
1 ATCGCAA
157537 CGACAAAATC
Statistics
Matches: 32, Mismatches: 3, Indels: 10
0.71 0.07 0.22
Matches are distributed among these distances:
14 10 0.31
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 16 0.50
ACGTcount: A:0.46, C:0.19, G:0.20, T:0.15
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:157520 original size:33 final size:33
Alignment explanation
Indices: 157478--157557 Score: 133
Period size: 33 Copynumber: 2.4 Consensus size: 33
157468 AAAAATGACT
* *
157478 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
*
157511 ATCGCAATGCGAAATTAAAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
157544 ATCGCAATGCGAAA
1 ATCGCAATGCGAAA
157558 CTAAATTCGC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.46, C:0.20, G:0.20, T:0.14
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGACAAA
Found at i:157585 original size:19 final size:19
Alignment explanation
Indices: 157563--157705 Score: 91
Period size: 19 Copynumber: 8.3 Consensus size: 19
157553 CGAAACTAAA
*
157563 TTCGCGTTACGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
*
157582 TTCGCATTGCGA--TTCA-
1 TTCGCGTTGCGATTTTCAT
157598 TT--CGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
*
157615 TTCGCATTGCGA--TTC--
1 TTCGCGTTGCGATTTTCAT
*
157630 -TCTCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
* * **
157648 TTCACATTGCGATAGTCATT
1 TTCGCGTTGCGATTTTCA-T
*
157668 TTTGCGTTGCGATTTTCA-
1 TTCGCGTTGCGATTTTCAT
157686 ----CGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
157701 TTCGC
1 TTCGC
157706 ATTGTGATTC
Statistics
Matches: 93, Mismatches: 15, Indels: 32
0.66 0.11 0.23
Matches are distributed among these distances:
14 30 0.32
16 9 0.10
17 9 0.10
19 31 0.33
20 14 0.15
ACGTcount: A:0.15, C:0.22, G:0.18, T:0.45
Consensus pattern (19 bp):
TTCGCGTTGCGATTTTCAT
Found at i:157609 original size:33 final size:33
Alignment explanation
Indices: 157567--157660 Score: 154
Period size: 33 Copynumber: 2.8 Consensus size: 33
157557 ACTAAATTCG
*
157567 CGTTACGATTTTCATTTCGCATTGCGATTCAT-T
1 CGTTGCGATTTTCATTTCGCATTGCGATTC-TCT
157600 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
*
157633 CGTTGCGATTTTCATTTCACATTGCGAT
1 CGTTGCGATTTTCATTTCGCATTGCGAT
157661 AGTCATTTTT
Statistics
Matches: 58, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
32 1 0.02
33 57 0.98
ACGTcount: A:0.16, C:0.22, G:0.17, T:0.45
Consensus pattern (33 bp):
CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
Found at i:157676 original size:39 final size:34
Alignment explanation
Indices: 157567--157685 Score: 152
Period size: 33 Copynumber: 3.4 Consensus size: 34
157557 ACTAAATTCG
*
157567 CGTTACGATTTTCATTTCGCATTGCGATTCA-TT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCATTT
*
157600 CGTTGCGATTTTCATTTCGCATTGCGATTC-TCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCATTT
*
157633 CGTTGCGATTTTCATTTCACATTGCGATAGTCATTTTT
1 CGTTGCGATTTTCATTTCGCATTGCGAT--TCA--TTT
157671 GCGTTGCGATTTTCA
1 -CGTTGCGATTTTCA
157686 CGTTGCGATT
Statistics
Matches: 75, Mismatches: 4, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
33 57 0.76
35 2 0.03
38 2 0.03
39 14 0.19
ACGTcount: A:0.16, C:0.21, G:0.18, T:0.45
Consensus pattern (34 bp):
CGTTGCGATTTTCATTTCGCATTGCGATTCATTT
Found at i:157689 original size:14 final size:14
Alignment explanation
Indices: 157672--157699 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
157662 GTCATTTTTG
157672 CGTTGCGATTTTCA
1 CGTTGCGATTTTCA
157686 CGTTGCGATTTTCA
1 CGTTGCGATTTTCA
157700 TTTCGCATTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.21, T:0.43
Consensus pattern (14 bp):
CGTTGCGATTTTCA
Found at i:157736 original size:33 final size:33
Alignment explanation
Indices: 157649--157747 Score: 81
Period size: 33 Copynumber: 2.9 Consensus size: 33
157639 GATTTTCATT
* * * * *
157649 TCACATTGCGATAGTCATTTTTGCGTTGCGATTT
1 TCACGTTGCGATAGT-AATTTCGCATTGCGATTC
** * *
157683 TCACGTTGCGATTTTCATTTCGCATTGTGATTC
1 TCACGTTGCGATAGTAATTTCGCATTGCGATTC
* *
157716 TCTCGTTGCGATAGTAATTTCCGCGTTGCGAT
1 TCACGTTGCGATAGTAATTT-CGCATTGCGAT
157748 AGAAATTAAG
Statistics
Matches: 49, Mismatches: 15, Indels: 2
0.74 0.23 0.03
Matches are distributed among these distances:
33 28 0.57
34 21 0.43
ACGTcount: A:0.16, C:0.20, G:0.21, T:0.42
Consensus pattern (33 bp):
TCACGTTGCGATAGTAATTTCGCATTGCGATTC
Found at i:161132 original size:21 final size:21
Alignment explanation
Indices: 161106--161147 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
161096 ATTTGAATAT
*
161106 TATGAAGGGGTATCGATTCCC
1 TATGAAGGGGTACCGATTCCC
161127 TATGAAGGGGTACCGATTCCC
1 TATGAAGGGGTACCGATTCCC
161148 CCCATTCTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (21 bp):
TATGAAGGGGTACCGATTCCC
Found at i:161473 original size:33 final size:31
Alignment explanation
Indices: 161435--161499 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 31
161425 GTAAAGGGGA
*
161435 AAGGTTCTAGTTTAGCCCGTGTAAAAGCTAGGG
1 AAGGTTCTAGTTTAGCCCG-G-AAAAACTAGGG
161468 AAGGTTCTAGTTTAGCCCGGAAAAACTAGGG
1 AAGGTTCTAGTTTAGCCCGGAAAAACTAGGG
161499 A
1 A
161500 GTTGTAAGGT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 11 0.35
32 1 0.03
33 19 0.61
ACGTcount: A:0.31, C:0.15, G:0.29, T:0.25
Consensus pattern (31 bp):
AAGGTTCTAGTTTAGCCCGGAAAAACTAGGG
Found at i:162736 original size:92 final size:92
Alignment explanation
Indices: 162579--162755 Score: 318
Period size: 92 Copynumber: 1.9 Consensus size: 92
162569 AACTCAATAG
* *
162579 ATACTCTACTTAAAAGGACTCGACTCGAGTTTTTAATGAGTCAAAACGAGTTACTTGATAATCTA
1 ATACTCTACTTAAAAAGACTCGACTCGAGTTTTTAATGAGCCAAAACGAGTTACTTGATAATCTA
*
162644 CTTGAAAAGCTCACGAGCAATAATATA
66 CTCGAAAAGCTCACGAGCAATAATATA
*
162671 ATACTCTACTTAAAAAGACTCGACTCGAGTTTTTAATGAGCCAAAACGAGTTACTTGATACTCTA
1 ATACTCTACTTAAAAAGACTCGACTCGAGTTTTTAATGAGCCAAAACGAGTTACTTGATAATCTA
162736 CTCGAAAAGCTCACGAGCAA
66 CTCGAAAAGCTCACGAGCAA
162756 CTTAAAAAAA
Statistics
Matches: 81, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
92 81 1.00
ACGTcount: A:0.37, C:0.20, G:0.15, T:0.28
Consensus pattern (92 bp):
ATACTCTACTTAAAAAGACTCGACTCGAGTTTTTAATGAGCCAAAACGAGTTACTTGATAATCTA
CTCGAAAAGCTCACGAGCAATAATATA
Found at i:162801 original size:24 final size:21
Alignment explanation
Indices: 162757--162804 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 21
162747 CACGAGCAAC
*
162757 TTAAAAAAATAATATATTAAT
1 TTAAAAAAATAATATAATAAT
162778 TTAAAAAAATAAACTAGTAATAAT
1 TTAAAAAAAT-AA-TA-TAATAAT
162802 TTA
1 TTA
162805 CTTTCATGTG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 10 0.43
22 2 0.09
23 2 0.09
24 9 0.39
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.35
Consensus pattern (21 bp):
TTAAAAAAATAATATAATAAT
Found at i:163256 original size:28 final size:29
Alignment explanation
Indices: 163203--163259 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 29
163193 GTTAATATTA
163203 AAAAAAAGTTTGGTACGGTTAACGGTTAAAG
1 AAAAAAAGTTTGGTAC-GTT-ACGGTTAAAG
163234 AAAAAAAGTTTGGTTA-GTT-CGGTTAA
1 AAAAAAAGTTTGG-TACGTTACGGTTAA
163260 TGGGAGTTCG
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
28 7 0.28
30 3 0.12
31 13 0.52
32 2 0.08
ACGTcount: A:0.40, C:0.05, G:0.25, T:0.30
Consensus pattern (29 bp):
AAAAAAAGTTTGGTACGTTACGGTTAAAG
Found at i:165674 original size:24 final size:24
Alignment explanation
Indices: 165640--165692 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
165630 CTGAAAAATC
*
165640 ATCAAAATCCGATTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
* *
165664 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
165688 ATCAA
1 ATCAA
165693 TTTTTGAATA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.40, C:0.21, G:0.17, T:0.23
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:166621 original size:60 final size:59
Alignment explanation
Indices: 166553--166721 Score: 196
Period size: 60 Copynumber: 2.8 Consensus size: 59
166543 CAGAATCTCG
* *
166553 TTGCGATTTACAGATTCGCATTGCGATTTACGTATTCGCATTGCGATTTAC-GTATTCACA
1 TTGCGATTTAC-GATTCGCATTGCGATTTACGTATTCGCGTTGCGATTTACAG-ATACACA
* * * * *
166613 TTGTGATTTACGGATACGCATTGCGATTTACGTATTCTCGTTGCGATTTACAGATACGCG
1 TTGCGATTTAC-GATTCGCATTGCGATTTACGTATTCGCGTTGCGATTTACAGATACACA
* * * *
166673 TTGCGATTTACGTATTCTCGTTGCGATTTACGGATACGCGTTGCGATTT
1 TTGCGATTTACG-ATTCGCATTGCGATTTACGTATTCGCGTTGCGATTT
166722 TATGTATTGT
Statistics
Matches: 92, Mismatches: 15, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
59 1 0.01
60 90 0.98
61 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.22, T:0.38
Consensus pattern (59 bp):
TTGCGATTTACGATTCGCATTGCGATTTACGTATTCGCGTTGCGATTTACAGATACACA
Found at i:166735 original size:21 final size:20
Alignment explanation
Indices: 166550--166745 Score: 127
Period size: 20 Copynumber: 9.8 Consensus size: 20
166540 AGCCAGAATC
166550 TCGTTGCGATTTACAG-ATTCG
1 TCGTTGCGATTTAC-GTATT-G
*
166571 -CATTGCGATTTACGTATTCG
1 TCGTTGCGATTTACGTATT-G
* *
166591 -CATTGCGATTTACGTATTC
1 TCGTTGCGATTTACGTATTG
* * * * *
166610 ACATTGTGATTTACGGATACG
1 TCGTTGCGATTTACGTAT-TG
* *
166631 -CATTGCGATTTACGTATTC
1 TCGTTGCGATTTACGTATTG
*
166650 TCGTTGCGATTTACAG-ATACG
1 TCGTTGCGATTTAC-GTAT-TG
*
166671 -CGTTGCGATTTACGTATTC
1 TCGTTGCGATTTACGTATTG
* *
166690 TCGTTGCGATTTACGGATACG
1 TCGTTGCGATTTACGTAT-TG
*
166711 -CGTTGCGATTTTATGTATTG
1 TCGTTGCGA-TTTACGTATTG
*
166731 TCGTTACGATTTACG
1 TCGTTGCGATTTACG
166746 GATACGCATT
Statistics
Matches: 141, Mismatches: 23, Indels: 23
0.75 0.12 0.12
Matches are distributed among these distances:
19 2 0.01
20 124 0.88
21 15 0.11
ACGTcount: A:0.20, C:0.18, G:0.22, T:0.39
Consensus pattern (20 bp):
TCGTTGCGATTTACGTATTG
Found at i:166741 original size:41 final size:40
Alignment explanation
Indices: 166553--166781 Score: 280
Period size: 40 Copynumber: 5.7 Consensus size: 40
166543 CAGAATCTCG
* * * *
166553 TTGCGATTTACAG-ATTCGCATTGCGATTTACGTATTCGCA
1 TTGCGATTTAC-GTATTCTCGTTGCGATTTACGGATACGCA
* * *
166593 TTGCGATTTACGTATTCACATTGTGATTTACGGATACGCA
1 TTGCGATTTACGTATTCTCGTTGCGATTTACGGATACGCA
* *
166633 TTGCGATTTACGTATTCTCGTTGCGATTTACAGATACGCG
1 TTGCGATTTACGTATTCTCGTTGCGATTTACGGATACGCA
*
166673 TTGCGATTTACGTATTCTCGTTGCGATTTACGGATACGCG
1 TTGCGATTTACGTATTCTCGTTGCGATTTACGGATACGCA
* * *
166713 TTGCGATTTTATGTATTGTCGTTACGATTTACGGATACGCA
1 TTGCGA-TTTACGTATTCTCGTTGCGATTTACGGATACGCA
* * *
166754 TTGCGGTTTTACGGATACTCGTTGCGAT
1 TTGC-GATTTACGTATTCTCGTTGCGAT
166782 AGTCAGAATC
Statistics
Matches: 166, Mismatches: 20, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
39 1 0.01
40 114 0.69
41 50 0.30
42 1 0.01
ACGTcount: A:0.21, C:0.18, G:0.23, T:0.38
Consensus pattern (40 bp):
TTGCGATTTACGTATTCTCGTTGCGATTTACGGATACGCA
Found at i:167023 original size:19 final size:19
Alignment explanation
Indices: 166996--167062 Score: 89
Period size: 19 Copynumber: 3.5 Consensus size: 19
166986 AATGTTTTTA
* *
166996 TGAATAGTAATTTACTATT
1 TGAACAGTAAATTACTATT
167015 TGAACAGTAAATTACTATT
1 TGAACAGTAAATTACTATT
** *
167034 TGAACAGTAAACCACTGTT
1 TGAACAGTAAATTACTATT
167053 TGAACAGTAA
1 TGAACAGTAA
167063 CCCGAGGCTC
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 43 1.00
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.34
Consensus pattern (19 bp):
TGAACAGTAAATTACTATT
Found at i:167194 original size:21 final size:21
Alignment explanation
Indices: 167168--167209 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
167158 ATTTGAATAT
* *
167168 TATGAAGGGGTATCGATTCCC
1 TATGAAGAGGTACCGATTCCC
167189 TATGAAGAGGTACCGATTCCC
1 TATGAAGAGGTACCGATTCCC
167210 CCCCATTTGG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (21 bp):
TATGAAGAGGTACCGATTCCC
Found at i:167907 original size:20 final size:19
Alignment explanation
Indices: 167858--167911 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 19
167848 ATTCTTCATA
167858 ATCGCGTTGCGATTCTGGG
1 ATCGCGTTGCGATTCTGGG
* **
167877 AACTGATTTGCGATTCTGGAG
1 ATC-GCGTTGCGATTCTGG-G
167898 ATCGCGTTGCGATT
1 ATCGCGTTGCGATT
167912 TTTATTTCGC
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
19 2 0.07
20 22 0.81
21 3 0.11
ACGTcount: A:0.17, C:0.19, G:0.31, T:0.33
Consensus pattern (19 bp):
ATCGCGTTGCGATTCTGGG
Found at i:168806 original size:93 final size:93
Alignment explanation
Indices: 168647--168824 Score: 302
Period size: 93 Copynumber: 1.9 Consensus size: 93
168637 AACTCAATAG
* * *
168647 ATACTCTACTTAAAAGGACTCTACTCGAGTTTTTAATGAGTCAAAACGAGTTACTTGATAATCTA
1 ATACTCTACTTAAAAAGACTCGACTCGAGTTTTTAATGAGCCAAAACGAGTTACTTGATAATCTA
**
168712 CTTGAAAAGCTCACGAGCAATAATATAA
66 CTCAAAAAGCTCACGAGCAATAATATAA
*
168740 ATACTCTACTTAAAAAGACTCGACTCGAGTTTTTAATGAGCCAAAACGAGTTACTTGATACTCTA
1 ATACTCTACTTAAAAAGACTCGACTCGAGTTTTTAATGAGCCAAAACGAGTTACTTGATAATCTA
168805 CTCAAAAAGCTCACGAGCAA
66 CTCAAAAAGCTCACGAGCAA
168825 CTTAAAAAAA
Statistics
Matches: 79, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
93 79 1.00
ACGTcount: A:0.38, C:0.20, G:0.14, T:0.28
Consensus pattern (93 bp):
ATACTCTACTTAAAAAGACTCGACTCGAGTTTTTAATGAGCCAAAACGAGTTACTTGATAATCTA
CTCAAAAAGCTCACGAGCAATAATATAA
Found at i:168870 original size:22 final size:22
Alignment explanation
Indices: 168829--168870 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
168819 GAGCAACTTA
*
168829 AAAAAAAATAATATATTAATTT
1 AAAAAAAATAATATAGTAATTT
168851 AAAAAAAATAA-ACTAGTAAT
1 AAAAAAAATAATA-TAGTAAT
168871 AATATTAACT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 1 0.06
22 17 0.94
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (22 bp):
AAAAAAAATAATATAGTAATTT
Found at i:169338 original size:28 final size:29
Alignment explanation
Indices: 169285--169341 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 29
169275 GTTAATATTA
169285 AAAAAAAGTTTGGTACGGTTAACGGTTAAAG
1 AAAAAAAGTTTGGTAC-GTT-ACGGTTAAAG
169316 AAAAAAAGTTTGGTTA-GTT-CGGTTAA
1 AAAAAAAGTTTGG-TACGTTACGGTTAA
169342 TGGGAGTTCG
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
28 7 0.28
30 3 0.12
31 13 0.52
32 2 0.08
ACGTcount: A:0.40, C:0.05, G:0.25, T:0.30
Consensus pattern (29 bp):
AAAAAAAGTTTGGTACGTTACGGTTAAAG
Found at i:171478 original size:34 final size:34
Alignment explanation
Indices: 171440--171521 Score: 155
Period size: 34 Copynumber: 2.4 Consensus size: 34
171430 AGTCCAACCC
171440 AACCAACCCCAAATAGAACTCAACTTGAAACCTA
1 AACCAACCCCAAATAGAACTCAACTTGAAACCTA
171474 AACCAACCCCAAATAGAACTCAACTTGAAACCTA
1 AACCAACCCCAAATAGAACTCAACTTGAAACCTA
*
171508 AACCAACCCTAAAT
1 AACCAACCCCAAAT
171522 TTAAACCCAA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
34 47 1.00
ACGTcount: A:0.48, C:0.33, G:0.05, T:0.15
Consensus pattern (34 bp):
AACCAACCCCAAATAGAACTCAACTTGAAACCTA
Found at i:171480 original size:17 final size:17
Alignment explanation
Indices: 171460--171514 Score: 51
Period size: 17 Copynumber: 3.2 Consensus size: 17
171450 AAATAGAACT
171460 CAACTTGAAACCTAAAC
1 CAACTTGAAACCTAAAC
***
171477 CAACCCCAAA--TAGAAC
1 CAACTTGAAACCTA-AAC
171493 TCAACTTGAAACCTAAAC
1 -CAACTTGAAACCTAAAC
171511 CAAC
1 CAAC
171515 CCTAAATTTA
Statistics
Matches: 28, Mismatches: 6, Indels: 8
0.67 0.14 0.19
Matches are distributed among these distances:
15 2 0.07
16 3 0.11
17 18 0.64
18 3 0.11
19 2 0.07
ACGTcount: A:0.47, C:0.33, G:0.05, T:0.15
Consensus pattern (17 bp):
CAACTTGAAACCTAAAC
Found at i:178253 original size:13 final size:13
Alignment explanation
Indices: 178227--178261 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
178217 CAATCCAGGC
178227 GACATACG-GGGT
1 GACATACGAGGGT
178239 GACATACGAGGGT
1 GACATACGAGGGT
178252 GACATACGAG
1 GACATACGAG
178262 CCATATACGA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 8 0.36
13 14 0.64
ACGTcount: A:0.31, C:0.17, G:0.37, T:0.14
Consensus pattern (13 bp):
GACATACGAGGGT
Found at i:178271 original size:11 final size:11
Alignment explanation
Indices: 178255--178319 Score: 59
Period size: 11 Copynumber: 6.1 Consensus size: 11
178245 CGAGGGTGAC
178255 ATACGAGCCAT
1 ATACGAGCCAT
178266 ATACGAGCC--
1 ATACGAGCCAT
178275 ATACGAGCCA-
1 ATACGAGCCAT
*
178285 ATGAGGAG-CAT
1 AT-ACGAGCCAT
178296 GCA-ACGAGCCAT
1 --ATACGAGCCAT
178308 ATACGAGCCAT
1 ATACGAGCCAT
178319 A
1 A
178320 CGAGCCAATG
Statistics
Matches: 45, Mismatches: 2, Indels: 14
0.74 0.03 0.23
Matches are distributed among these distances:
9 9 0.20
10 5 0.11
11 27 0.60
12 3 0.07
13 1 0.02
ACGTcount: A:0.37, C:0.26, G:0.23, T:0.14
Consensus pattern (11 bp):
ATACGAGCCAT
Found at i:178304 original size:42 final size:42
Alignment explanation
Indices: 178257--178410 Score: 183
Period size: 42 Copynumber: 4.0 Consensus size: 42
178247 AGGGTGACAT
*
178257 ACGAGCCATATACGAGCCATACGAGCCAATGAGGAGCATGCA
1 ACGAGCCATATACGAGCCATACGAGCCAATGGGGAGCATGCA
178299 ACGAGCCATATACGAGCCATACGAGCCAATGGGGAGCATGC-
1 ACGAGCCATATACGAGCCATACGAGCCAATGGGGAGCATGCA
* *
178340 A-G-G--A-ATA-GAG--A-GCCA----ATGGGGAGCATGCA
1 ACGAGCCATATACGAGCCATACGAGCCAATGGGGAGCATGCA
178369 ACGAGCCATATACGAGCCATACGAGCCAATGGGGAGCATGCA
1 ACGAGCCATATACGAGCCATACGAGCCAATGGGGAGCATGCA
178411 GGAATAAAGA
Statistics
Matches: 93, Mismatches: 5, Indels: 28
0.74 0.04 0.22
Matches are distributed among these distances:
28 13 0.14
29 1 0.01
30 1 0.01
31 1 0.01
32 2 0.02
33 2 0.02
34 3 0.03
35 6 0.06
36 3 0.03
37 2 0.02
38 2 0.02
39 1 0.01
40 1 0.01
41 1 0.01
42 54 0.58
ACGTcount: A:0.34, C:0.24, G:0.30, T:0.12
Consensus pattern (42 bp):
ACGAGCCATATACGAGCCATACGAGCCAATGGGGAGCATGCA
Found at i:178365 original size:70 final size:70
Alignment explanation
Indices: 178279--178421 Score: 268
Period size: 70 Copynumber: 2.0 Consensus size: 70
178269 CGAGCCATAC
178279 GAGCCAATGAGGAGCATGCAACGAGCCATATACGAGCCATACGAGCCAATGGGGAGCATGCAGGA
1 GAGCCAATGAGGAGCATGCAACGAGCCATATACGAGCCATACGAGCCAATGGGGAGCATGCAGGA
*
178344 ATAGA
66 ATAAA
*
178349 GAGCCAATGGGGAGCATGCAACGAGCCATATACGAGCCATACGAGCCAATGGGGAGCATGCAGGA
1 GAGCCAATGAGGAGCATGCAACGAGCCATATACGAGCCATACGAGCCAATGGGGAGCATGCAGGA
178414 ATAAA
66 ATAAA
178419 GAG
1 GAG
178422 GTCGCCATGC
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
70 71 1.00
ACGTcount: A:0.36, C:0.21, G:0.32, T:0.11
Consensus pattern (70 bp):
GAGCCAATGAGGAGCATGCAACGAGCCATATACGAGCCATACGAGCCAATGGGGAGCATGCAGGA
ATAAA
Found at i:178470 original size:29 final size:30
Alignment explanation
Indices: 178420--178551 Score: 218
Period size: 29 Copynumber: 4.5 Consensus size: 30
178410 AGGAATAAAG
*
178420 AGGTCGCCATGCAG-CCTAGGCGACCTTGT
1 AGGTCGCCATGTAGTCCTAGGCGACCTTGT
178449 AGGTCGCCATGTAGTCCT-GGCGACCTTGT
1 AGGTCGCCATGTAGTCCTAGGCGACCTTGT
178478 AGGTCGCCATGTAGTCCT-GGCGACCTTGT
1 AGGTCGCCATGTAGTCCTAGGCGACCTTGT
*
178507 AGGTCGCCATGTAGT-CTCGGCGACCTTGT
1 AGGTCGCCATGTAGTCCTAGGCGACCTTGT
178536 AGGTCGCCATGTAGTC
1 AGGTCGCCATGTAGTC
178552 TCGGCGCCAT
Statistics
Matches: 99, Mismatches: 1, Indels: 5
0.94 0.01 0.05
Matches are distributed among these distances:
28 2 0.02
29 94 0.95
30 3 0.03
ACGTcount: A:0.15, C:0.28, G:0.31, T:0.26
Consensus pattern (30 bp):
AGGTCGCCATGTAGTCCTAGGCGACCTTGT
Found at i:178864 original size:21 final size:21
Alignment explanation
Indices: 178840--178892 Score: 97
Period size: 21 Copynumber: 2.5 Consensus size: 21
178830 TTGCAGCCGA
178840 GAAAGAAAGAAAGGGAGAAAG
1 GAAAGAAAGAAAGGGAGAAAG
178861 GAAAGAAAGAAAGGGAGAAAG
1 GAAAGAAAGAAAGGGAGAAAG
*
178882 GAAAGTAAGAA
1 GAAAGAAAGAA
178893 GAAGAAAGGG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.62, C:0.00, G:0.36, T:0.02
Consensus pattern (21 bp):
GAAAGAAAGAAAGGGAGAAAG
Found at i:178886 original size:17 final size:16
Alignment explanation
Indices: 178838--178869 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
178828 GATTGCAGCC
178838 GAGAAAGAAAGAAAGG
1 GAGAAAGAAAGAAAGG
178854 GAGAAAGGAAAGAAAG
1 GAGAAA-GAAAGAAAG
178870 AAAGGGAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (16 bp):
GAGAAAGAAAGAAAGG
Found at i:179151 original size:46 final size:48
Alignment explanation
Indices: 179092--179183 Score: 136
Period size: 46 Copynumber: 2.0 Consensus size: 48
179082 GTTTATAGTT
*
179092 AAAAAATAATTAATTAGTTTGT-TTTGTT-AATAGTT-AGTTATATAA
1 AAAAAATAATTAATTAGTTTGTGTTAGTTAAATAGTTAAGTTATATAA
*
179137 AAAAAATTATTTAATTAGTTTGTGTTAGTTAAATAGTTAAGTTATAT
1 AAAAAA-TAATTAATTAGTTTGTGTTAGTTAAATAGTTAAGTTATAT
179184 TGTTTGTTGA
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
45 6 0.15
46 15 0.37
47 5 0.12
48 7 0.17
49 8 0.20
ACGTcount: A:0.41, C:0.00, G:0.12, T:0.47
Consensus pattern (48 bp):
AAAAAATAATTAATTAGTTTGTGTTAGTTAAATAGTTAAGTTATATAA
Found at i:179375 original size:16 final size:16
Alignment explanation
Indices: 179343--179389 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
179333 TTTAAAAAGT
*
179343 TTAGTTTGTTAGT-TTA
1 TTAGTTTATTA-TATTA
179359 TTAGTTTATTATATTA
1 TTAGTTTATTATATTA
*
179375 TAAG-TTATTATATTA
1 TTAGTTTATTATATTA
179390 AAGTTTAGTG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
15 12 0.43
16 16 0.57
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.60
Consensus pattern (16 bp):
TTAGTTTATTATATTA
Found at i:179384 original size:15 final size:14
Alignment explanation
Indices: 179364--179394 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
179354 GTTTATTAGT
179364 TTATTATATTATAAG
1 TTATTATATTA-AAG
179379 TTATTATATTAAAG
1 TTATTATATTAAAG
179393 TT
1 TT
179395 TAGTGTTGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.31
15 11 0.69
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (14 bp):
TTATTATATTAAAG
Found at i:193929 original size:31 final size:31
Alignment explanation
Indices: 193901--193962 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
193891 GATTTTAAAG
193901 ATTAAAAATAAAGAAATAGCAAGGTTTAATA
1 ATTAAAAATAAAGAAATAGCAAGGTTTAATA
193932 ATTAAAAATAAAGAAATAGCAAGGTTTAATA
1 ATTAAAAATAAAGAAATAGCAAGGTTTAATA
193963 CATAATTTAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.58, C:0.03, G:0.13, T:0.26
Consensus pattern (31 bp):
ATTAAAAATAAAGAAATAGCAAGGTTTAATA
Found at i:199452 original size:41 final size:41
Alignment explanation
Indices: 199395--199477 Score: 148
Period size: 41 Copynumber: 2.0 Consensus size: 41
199385 TTTCTTTCTT
*
199395 GAAAACTTAGTTTTCATGTGTACCTTAAAGAAGAAGTAACA
1 GAAAACTAAGTTTTCATGTGTACCTTAAAGAAGAAGTAACA
*
199436 GAAAACTAAGTTTTCATGTGTACCTTAAAGGAGAAGTAACA
1 GAAAACTAAGTTTTCATGTGTACCTTAAAGAAGAAGTAACA
199477 G
1 G
199478 TCGATGAATA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.41, C:0.12, G:0.19, T:0.28
Consensus pattern (41 bp):
GAAAACTAAGTTTTCATGTGTACCTTAAAGAAGAAGTAACA
Found at i:199492 original size:30 final size:30
Alignment explanation
Indices: 199456--199515 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
199446 TTTTCATGTG
*
199456 TACCTTAAAGGAGAAGTAACAGTCGATGAA
1 TACCTTAAAGAAGAAGTAACAGTCGATGAA
*
199486 TACCTTAAAGAAGAAGTAGCAGTCGATGAA
1 TACCTTAAAGAAGAAGTAACAGTCGATGAA
199516 GAATACCCAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.43, C:0.13, G:0.23, T:0.20
Consensus pattern (30 bp):
TACCTTAAAGAAGAAGTAACAGTCGATGAA
Found at i:207137 original size:3 final size:3
Alignment explanation
Indices: 207129--207170 Score: 77
Period size: 3 Copynumber: 14.3 Consensus size: 3
207119 TTTACAAAGA
207129 AAT AAT AAT AAT AAT AAT AAT -AT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
207171 GTAGTAGAGT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.05
3 36 0.95
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:207155 original size:17 final size:17
Alignment explanation
Indices: 207133--207167 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
207123 CAAAGAAATA
207133 ATAATAATAATAATAAT
1 ATAATAATAATAATAAT
207150 ATAATAATAATAATAAT
1 ATAATAATAATAATAAT
207167 A
1 A
207168 ATAGTAGTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
ATAATAATAATAATAAT
Found at i:207155 original size:20 final size:20
Alignment explanation
Indices: 207130--207170 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
207120 TTACAAAGAA
207130 ATAATAATAATAATAATAAT
1 ATAATAATAATAATAATAAT
207150 ATAATAATAATAATAATAAT
1 ATAATAATAATAATAATAAT
207170 A
1 A
207171 GTAGTAGAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (20 bp):
ATAATAATAATAATAATAAT
Found at i:208330 original size:15 final size:15
Alignment explanation
Indices: 208312--208344 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
208302 AAATTCTAAA
208312 TATTTAAATAAAAAT
1 TATTTAAATAAAAAT
*
208327 TATTTATATAAAAAT
1 TATTTAAATAAAAAT
208342 TAT
1 TAT
208345 ATTTGTTGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
TATTTAAATAAAAAT
Found at i:217843 original size:29 final size:31
Alignment explanation
Indices: 217810--217873 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 31
217800 GTTATTTCAT
* *
217810 TCATTATACTTT-TAATT-TTTTTAATTTAC
1 TCATTAAACTTTCGAATTATTTTTAATTTAC
* *
217839 TCATTAAACTTTCGAATTATTTTTATTTTAG
1 TCATTAAACTTTCGAATTATTTTTAATTTAC
217870 TCAT
1 TCAT
217874 CATAAATTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
29 11 0.38
30 4 0.14
31 14 0.48
ACGTcount: A:0.28, C:0.11, G:0.03, T:0.58
Consensus pattern (31 bp):
TCATTAAACTTTCGAATTATTTTTAATTTAC
Found at i:217919 original size:3 final size:3
Alignment explanation
Indices: 217911--217935 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
217901 GACGTGTTAT
217911 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
217936 ATATATACAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:219749 original size:20 final size:20
Alignment explanation
Indices: 219717--219759 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
219707 ATTCAAAAGT
*
219717 TTAATAAGTAAATTAAAAAA
1 TTAATAAGTAAATGAAAAAA
*
219737 TTAA-AAGTAAAATGAATAAA
1 TTAATAAGT-AAATGAAAAAA
219757 TTA
1 TTA
219760 GGAGAACGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (20 bp):
TTAATAAGTAAATGAAAAAA
Found at i:226647 original size:3 final size:3
Alignment explanation
Indices: 226639--226669 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
226629 GCAACTTTTG
226639 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT C
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT C
226670 AGTCCCTCAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
CTT
Found at i:228065 original size:29 final size:29
Alignment explanation
Indices: 228023--228111 Score: 169
Period size: 29 Copynumber: 3.1 Consensus size: 29
228013 ATACAGTGGT
228023 CTTGGAGGTCGCCATGGCATCCGGGCGAC
1 CTTGGAGGTCGCCATGGCATCCGGGCGAC
228052 CTTGGAGGTCGCCATGGCATCCGGGCGAC
1 CTTGGAGGTCGCCATGGCATCCGGGCGAC
*
228081 CTTGAAGGTCGCCATGGCATCCGGGCGAC
1 CTTGGAGGTCGCCATGGCATCCGGGCGAC
228110 CT
1 CT
228112 GTGTGTATTA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 59 1.00
ACGTcount: A:0.15, C:0.31, G:0.36, T:0.18
Consensus pattern (29 bp):
CTTGGAGGTCGCCATGGCATCCGGGCGAC
Found at i:228171 original size:17 final size:16
Alignment explanation
Indices: 228157--228271 Score: 99
Period size: 16 Copynumber: 7.1 Consensus size: 16
228147 AACATGGGAC
228157 GTGGGAATGCATGGGG
1 GTGGGAATGCATGGGG
* *
228173 GAGGGGATGCAT-GGG
1 GTGGGAATGCATGGGG
228188 GTGGGAATGCATGGGG
1 GTGGGAATGCATGGGG
* * **
228204 GAGGG-ATCAACATAGGAT
1 GTGGGAAT--GCAT-GGGG
228222 GTGGGAATGCATGGGG
1 GTGGGAATGCATGGGG
* * *
228238 GAGGGGATGCATGGGAC
1 GTGGGAATGCATGGG-G
228255 GTGGGAATGCATGGGG
1 GTGGGAATGCATGGGG
228271 G
1 G
228272 AGGGGATGGT
Statistics
Matches: 75, Mismatches: 18, Indels: 12
0.71 0.17 0.11
Matches are distributed among these distances:
15 15 0.20
16 33 0.44
17 19 0.25
18 6 0.08
19 2 0.03
ACGTcount: A:0.23, C:0.08, G:0.53, T:0.17
Consensus pattern (16 bp):
GTGGGAATGCATGGGG
Found at i:228186 original size:33 final size:33
Alignment explanation
Indices: 228149--228297 Score: 196
Period size: 33 Copynumber: 4.5 Consensus size: 33
228139 ATGCAATCAA
228149 CATGGGACGTGGGAATGCATGGGGGAGGGGATG
1 CATGGGACGTGGGAATGCATGGGGGAGGGGATG
*
228182 CATGGG--GTGGGAATGCATGGGGGA-GGGATCAA
1 CATGGGACGTGGGAATGCATGGGGGAGGGGAT--G
* *
228214 CATAGGATGTGGGAATGCATGGGGGAGGGGATG
1 CATGGGACGTGGGAATGCATGGGGGAGGGGATG
228247 CATGGGACGTGGGAATGCATGGGGGAGGGGATGGTG
1 CATGGGACGTGGGAATGCATGGGGGAGGGGA---TG
*
228283 CATTGGACGTGGGAA
1 CATGGGACGTGGGAA
228298 CTGTGCATGG
Statistics
Matches: 102, Mismatches: 6, Indels: 13
0.84 0.05 0.11
Matches are distributed among these distances:
30 5 0.05
31 18 0.18
32 5 0.05
33 35 0.34
34 18 0.18
35 5 0.05
36 16 0.16
ACGTcount: A:0.23, C:0.09, G:0.52, T:0.17
Consensus pattern (33 bp):
CATGGGACGTGGGAATGCATGGGGGAGGGGATG
Found at i:228230 original size:65 final size:66
Alignment explanation
Indices: 228144--228275 Score: 230
Period size: 65 Copynumber: 2.0 Consensus size: 66
228134 TCGCCATGCA
*
228144 ATCAACATGGGACGTGGGAATGCATGGGGGAGGGGATGCATGGG-GTGGGAATGCATGGGGGAGG
1 ATCAACATAGGACGTGGGAATGCATGGGGGAGGGGATGCATGGGAGTGGGAATGCATGGGGGAGG
228208 G
66 G
*
228209 ATCAACATAGGATGTGGGAATGCATGGGGGAGGGGATGCATGGGACGTGGGAATGCATGGGGGAG
1 ATCAACATAGGACGTGGGAATGCATGGGGGAGGGGATGCATGGGA-GTGGGAATGCATGGGGGAG
228274 GG
65 GG
228276 GATGGTGCAT
Statistics
Matches: 63, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
65 42 0.67
67 21 0.33
ACGTcount: A:0.24, C:0.09, G:0.51, T:0.16
Consensus pattern (66 bp):
ATCAACATAGGACGTGGGAATGCATGGGGGAGGGGATGCATGGGAGTGGGAATGCATGGGGGAGG
G
Found at i:228736 original size:21 final size:21
Alignment explanation
Indices: 228711--228754 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
228701 AATCTAGTTA
228711 ATTAGTTTGTTAGTATAAATT
1 ATTAGTTTGTTAGTATAAATT
* *
228732 ATTAGTTTGTTAGTTTAAGTT
1 ATTAGTTTGTTAGTATAAATT
228753 AT
1 AT
228755 ATTATATTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.30, C:0.00, G:0.16, T:0.55
Consensus pattern (21 bp):
ATTAGTTTGTTAGTATAAATT
Found at i:228764 original size:28 final size:30
Alignment explanation
Indices: 228731--228793 Score: 103
Period size: 28 Copynumber: 2.2 Consensus size: 30
228721 TAGTATAAAT
*
228731 TATTAGTTTGTTAGTTTAAG-T-TATATTA
1 TATTAGTTTATTAGTTTAAGTTATATATTA
228759 TATTAGTTTATTAGTTTAAGTTATATATTA
1 TATTAGTTTATTAGTTTAAGTTATATATTA
228789 TATTA
1 TATTA
228794 TATAAAAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 19 0.59
29 1 0.03
30 12 0.38
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57
Consensus pattern (30 bp):
TATTAGTTTATTAGTTTAAGTTATATATTA
Found at i:229343 original size:20 final size:21
Alignment explanation
Indices: 229299--229343 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
229289 AAATATTGTG
**
229299 TTTAAAAATATTTAGTGTTGT
1 TTTAAAAATATTTAGTGTTAA
*
229320 TTTAAAAATATTTTGT-TTAA
1 TTTAAAAATATTTAGTGTTAA
229340 TTTA
1 TTTA
229344 CATTGTATGT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 6 0.29
21 15 0.71
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.56
Consensus pattern (21 bp):
TTTAAAAATATTTAGTGTTAA
Found at i:230189 original size:35 final size:35
Alignment explanation
Indices: 230150--230405 Score: 166
Period size: 35 Copynumber: 7.3 Consensus size: 35
230140 TGGGGAGAAC
230150 GCTCGTATGGCTCGTATGCATGGGGAGAACCATTG
1 GCTCGTATGGCTCGTATGCATGGGGAGAACCATTG
* *
230185 GCTCGTATGGCTCGTATGCATGGGGAGAACCACCTC
1 GCTCGTATGGCTCGTATGCATGGGGAGAACCA-TTG
* * *
230221 GCATGGGGA-GAACGCTCGTATGGCTCACATGGGGAGAACGCTCGTATG
1 GC-T-CGTATG---GCTCGTAT-G----CATGGGGAGAA--C-CAT-TG
* **
230269 GCTCGTAT-GCATGGGGCTCGCATGGGGAGAA-C----
1 GCTCGTATGGC-T-CGTAT-GCATGGGGAGAACCATTG
230301 GCTCGTATGGCTC----GCATGGGGAGAA-C----
1 GCTCGTATGGCTCGTATGCATGGGGAGAACCATTG
230327 GCTCGTATGGCTCGTATGCATGGGGAGAACCATTG
1 GCTCGTATGGCTCGTATGCATGGGGAGAACCATTG
230362 GCTCGTATGGCTCGTATGCATGGGGAGAACCATTG
1 GCTCGTATGGCTCGTATGCATGGGGAGAACCATTG
230397 GCTCGTATG
1 GCTCGTATG
230406 TTCCCGTATG
Statistics
Matches: 179, Mismatches: 14, Indels: 56
0.72 0.06 0.22
Matches are distributed among these distances:
26 26 0.15
30 12 0.07
31 1 0.01
32 9 0.05
33 2 0.01
35 76 0.42
36 3 0.02
37 3 0.02
38 2 0.01
40 8 0.04
41 12 0.07
43 2 0.01
44 1 0.01
45 14 0.08
46 2 0.01
47 2 0.01
48 4 0.02
ACGTcount: A:0.20, C:0.22, G:0.36, T:0.23
Consensus pattern (35 bp):
GCTCGTATGGCTCGTATGCATGGGGAGAACCATTG
Found at i:230258 original size:26 final size:26
Alignment explanation
Indices: 230222--230272 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
230212 AACCACCTCG
230222 CATGGGGAGAACGCTCGTATGGCTCA
1 CATGGGGAGAACGCTCGTATGGCTCA
230248 CATGGGGAGAACGCTCGTATGGCTC
1 CATGGGGAGAACGCTCGTATGGCTC
230273 GTATGCATGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.22, C:0.24, G:0.35, T:0.20
Consensus pattern (26 bp):
CATGGGGAGAACGCTCGTATGGCTCA
Found at i:230301 original size:67 final size:67
Alignment explanation
Indices: 230218--230351 Score: 259
Period size: 67 Copynumber: 2.0 Consensus size: 67
230208 GGAGAACCAC
230218 CTCGCATGGGGAGAACGCTCGTATGGCTCACATGGGGAGAACGCTCGTATGGCTCGTATGCATGG
1 CTCGCATGGGGAGAACGCTCGTATGGCTCACATGGGGAGAACGCTCGTATGGCTCGTATGCATGG
230283 GG
66 GG
*
230285 CTCGCATGGGGAGAACGCTCGTATGGCTCGCATGGGGAGAACGCTCGTATGGCTCGTATGCATGG
1 CTCGCATGGGGAGAACGCTCGTATGGCTCACATGGGGAGAACGCTCGTATGGCTCGTATGCATGG
230350 GG
66 GG
230352 AGAACCATTG
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
67 66 1.00
ACGTcount: A:0.19, C:0.22, G:0.38, T:0.21
Consensus pattern (67 bp):
CTCGCATGGGGAGAACGCTCGTATGGCTCACATGGGGAGAACGCTCGTATGGCTCGTATGCATGG
GG
Found at i:230312 original size:26 final size:26
Alignment explanation
Indices: 230283--230340 Score: 116
Period size: 26 Copynumber: 2.2 Consensus size: 26
230273 GTATGCATGG
230283 GGCTCGCATGGGGAGAACGCTCGTAT
1 GGCTCGCATGGGGAGAACGCTCGTAT
230309 GGCTCGCATGGGGAGAACGCTCGTAT
1 GGCTCGCATGGGGAGAACGCTCGTAT
230335 GGCTCG
1 GGCTCG
230341 TATGCATGGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.17, C:0.24, G:0.40, T:0.19
Consensus pattern (26 bp):
GGCTCGCATGGGGAGAACGCTCGTAT
Found at i:233435 original size:10 final size:10
Alignment explanation
Indices: 233420--233453 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
233410 TTCATTTACC
233420 ATTTATTTTT
1 ATTTATTTTT
233430 ATTTATTTTT
1 ATTTATTTTT
* *
233440 ATCTATTTCT
1 ATTTATTTTT
233450 ATTT
1 ATTT
233454 TACTAACGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.74
Consensus pattern (10 bp):
ATTTATTTTT
Found at i:242892 original size:52 final size:51
Alignment explanation
Indices: 242811--242908 Score: 142
Period size: 52 Copynumber: 1.9 Consensus size: 51
242801 AATACTTCGC
* **
242811 TTAGGATGAAAACCCGAGAGGGCGTCCTAAGTTGAAAAAAAAAAAAACACGT
1 TTAGGATGAAAACCCGAAAGGGCACCCTAA-TTGAAAAAAAAAAAAACACGT
* *
242863 TTAGGGTGAAAACCCGAAAGGGCACCCTAATTGAAAAAAGAAAAAA
1 TTAGGATGAAAACCCGAAAGGGCACCCTAATTGAAAAAAAAAAAAA
242909 GAAAAAGAAG
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
51 15 0.37
52 26 0.63
ACGTcount: A:0.48, C:0.15, G:0.22, T:0.14
Consensus pattern (51 bp):
TTAGGATGAAAACCCGAAAGGGCACCCTAATTGAAAAAAAAAAAAACACGT
Found at i:243835 original size:105 final size:105
Alignment explanation
Indices: 243653--244515 Score: 1398
Period size: 105 Copynumber: 8.3 Consensus size: 105
243643 AGGTTTTACC
* *
243653 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGATTCCAGACAACGTAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
*
243718 ACGAAGGGACCGCTGGTTGTCAACAAACATTTTTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
243758 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
*
243823 ACGAAGGGACCGCTGGTTGTCAACGAACATTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
**
243863 CAGAGCCAATTTCTGCTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
243928 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
* *
243968 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGATTCCAGACAACGTAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
*
244033 ACGAAGGGACCGCTGGTTGTCAACAAACATTTTTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
* * * *
244073 CAGAGCCAATTCCAACTTCACAATGAAGGATATTGGACTCCAGGCAACGTAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
* *
244138 AAGAAGGGACCGCTGGTTGTCAACGAACATTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
*
244178 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTTCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
* * * *
244243 ACGAAGGGACCGCTGCTTGTCAAC-AACAACTTCCCAATCT
66 ACGAAGGGACCGCTGGTTGTCAACAAAC-ATTTCTCAATTT
*
244283 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAATGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
* * * * *
244348 ACGAAGGGACCGCTGCTTGTCAAC-AACGACTCCCCAATCT
66 ACGAAGGGACCGCTGGTTGTCAACAAAC-ATTTCTCAATTT
244388 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
*
244453 ACGAAGGGACCGCTGCTTGTCAACAAA-A-TT-TC-A-TT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
**
244488 CAGATTCAATTTCAACTTCACAACGAAG
1 CAGAGCCAATTTCAACTTCACAACGAAG
244516 TATCTTTGGC
Statistics
Matches: 717, Mismatches: 39, Indels: 9
0.94 0.05 0.01
Matches are distributed among these distances:
100 27 0.04
101 1 0.00
102 1 0.00
103 1 0.00
104 4 0.01
105 681 0.95
106 2 0.00
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (105 bp):
CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
Done.