Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008397.1 Hibiscus syriacus cultivar Beakdansim tig00111166_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2560905
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 8 of 13
Found at i:1395571 original size:23 final size:23
Alignment explanation
Indices: 1395536--1395626 Score: 114
Period size: 23 Copynumber: 4.0 Consensus size: 23
1395526 ATTATTATAT
1395536 GGCACTACT-GTGCAATTCTACGC
1 GGCACT-CTGGTGCAATTCTACGC
1395559 GGCACTCTGGTGCAATTCTACGC
1 GGCACTCTGGTGCAATTCTACGC
* * *
1395582 GACACTCCGGTGCAATTCTACGT
1 GGCACTCTGGTGCAATTCTACGC
*
1395605 GGCACT-TCGGTGCAATTATACG
1 GGCACTCT-GGTGCAATTCTACG
1395627 AGCTGTGGTG
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
22 2 0.03
23 58 0.97
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (23 bp):
GGCACTCTGGTGCAATTCTACGC
Found at i:1397048 original size:62 final size:63
Alignment explanation
Indices: 1396906--1397048 Score: 184
Period size: 62 Copynumber: 2.3 Consensus size: 63
1396896 AATGATGTAT
* * *
1396906 TGTAAAAGTTGATTTATTTAATTGATGAGGAAATAATAATTATTTTTTATTTGTTTAATTGATT
1 TGTAAAAGTTGATTTGTTTAATTGATGA-GAAATAATAATTATTTTTTACTTGTTTAATTGATC
* ** *
1396970 TGTAAAAGTTGA-TTGTTTAATTGATGTA-TAATAATTCTTATTTTTTGCTTGTTTAATTGATC
1 TGTAAAAGTTGATTTGTTTAATTGATG-AGAAATAATAATTATTTTTTACTTGTTTAATTGATC
1397032 TGTAAAAG-TGATTTGTT
1 TGTAAAAGTTGATTTGTT
1397049 GTTTTAAATT
Statistics
Matches: 70, Mismatches: 7, Indels: 6
0.84 0.08 0.07
Matches are distributed among these distances:
61 3 0.04
62 41 0.59
63 13 0.19
64 13 0.19
ACGTcount: A:0.31, C:0.02, G:0.15, T:0.52
Consensus pattern (63 bp):
TGTAAAAGTTGATTTGTTTAATTGATGAGAAATAATAATTATTTTTTACTTGTTTAATTGATC
Found at i:1397166 original size:29 final size:29
Alignment explanation
Indices: 1397132--1397188 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
1397122 TTTCGCGTTT
1397132 CAAATTTGACTTTCGCAAAAATCGCAACG
1 CAAATTTGACTTTCGCAAAAATCGCAACG
*
1397161 CAAATTTGACTTTCGCAATAATCGCAAC
1 CAAATTTGACTTTCGCAAAAATCGCAAC
1397189 AAAAAATCTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.37, C:0.25, G:0.12, T:0.26
Consensus pattern (29 bp):
CAAATTTGACTTTCGCAAAAATCGCAACG
Found at i:1398566 original size:18 final size:18
Alignment explanation
Indices: 1398545--1398581 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
1398535 TGAAATTTAT
1398545 ATTGAAATTCAAACTCAA
1 ATTGAAATTCAAACTCAA
* *
1398563 ATTGAAATTTAAATTCAA
1 ATTGAAATTCAAACTCAA
1398581 A
1 A
1398582 CTCCAATTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.11, G:0.05, T:0.32
Consensus pattern (18 bp):
ATTGAAATTCAAACTCAA
Found at i:1399186 original size:29 final size:29
Alignment explanation
Indices: 1399144--1399204 Score: 95
Period size: 29 Copynumber: 2.1 Consensus size: 29
1399134 AATTCGCAAC
*
1399144 GCGAAAGTAAAATTCGCGTTGCGATTGTT
1 GCGAAAGTAAAATTCGCATTGCGATTGTT
* *
1399173 GCGAAAGTCAAATTCGCATTGCGATTTTT
1 GCGAAAGTAAAATTCGCATTGCGATTGTT
1399202 GCG
1 GCG
1399205 TTGCGAATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.31
Consensus pattern (29 bp):
GCGAAAGTAAAATTCGCATTGCGATTGTT
Found at i:1399463 original size:18 final size:18
Alignment explanation
Indices: 1399440--1399475 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
1399430 AAGCCGGTTA
1399440 TGATTGAGATTTTGATTT
1 TGATTGAGATTTTGATTT
*
1399458 TGATTGCGATTTTGATTT
1 TGATTGAGATTTTGATTT
1399476 CCTTTTGCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.19, C:0.03, G:0.22, T:0.56
Consensus pattern (18 bp):
TGATTGAGATTTTGATTT
Found at i:1401917 original size:12 final size:12
Alignment explanation
Indices: 1401896--1401929 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
1401886 GGTTGTGGGT
*
1401896 TTTGAGATTGTG
1 TTTGATATTGTG
1401908 TTTGATATTGTG
1 TTTGATATTGTG
*
1401920 TTTGGTATTG
1 TTTGATATTG
1401930 GAAATATGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.29, T:0.56
Consensus pattern (12 bp):
TTTGATATTGTG
Found at i:1402560 original size:14 final size:15
Alignment explanation
Indices: 1402524--1402561 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
1402514 AAAATCATTG
1402524 AAAAATTATATAGAA
1 AAAAATTATATAGAA
*
1402539 ATAAAATTATGTA-AA
1 A-AAAATTATATAGAA
1402554 AAAAATTA
1 AAAAATTA
1402562 GAGATGGGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 7 0.33
15 4 0.19
16 10 0.48
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (15 bp):
AAAAATTATATAGAA
Found at i:1402761 original size:20 final size:20
Alignment explanation
Indices: 1402738--1402851 Score: 106
Period size: 20 Copynumber: 5.7 Consensus size: 20
1402728 TAAAATTCAT
*
1402738 GTTGCGAATTCGAAAATCGA
1 GTTGCGAATTTGAAAATCGA
*
1402758 GTTGCGAA-TTCAGAAATCGA
1 GTTGCGAATTTGA-AAATCGA
* *
1402778 GTTGCGAATTTGAAATTCAGT
1 GTTGCGAATTTGAAAATC-GA
*
1402799 GTTGCGAATTTGGAAATCGCA
1 GTTGCGAATTTGAAAATCG-A
* * *
1402820 -TTGTGAATTTGGAAATCGC
1 GTTGCGAATTTGAAAATCGA
*
1402839 GTTGCAAATTTGA
1 GTTGCGAATTTGA
1402852 CTTCTGTTTT
Statistics
Matches: 76, Mismatches: 13, Indels: 10
0.77 0.13 0.10
Matches are distributed among these distances:
19 2 0.03
20 54 0.71
21 20 0.26
ACGTcount: A:0.31, C:0.12, G:0.25, T:0.32
Consensus pattern (20 bp):
GTTGCGAATTTGAAAATCGA
Found at i:1402808 original size:41 final size:41
Alignment explanation
Indices: 1402738--1402848 Score: 111
Period size: 41 Copynumber: 2.7 Consensus size: 41
1402728 TAAAATTCAT
* *
1402738 GTTGCGAATTCGAAAATCGAGTTGCGAATTCAGAAATCG-A
1 GTTGCGAATTTGAAATTCGAGTTGCGAATTCAGAAATCGCA
* **
1402778 GTTGCGAATTTGAAATTCAGTGTTGCGAATTTGGAAATCGCA
1 GTTGCGAATTTGAAATTC-GAGTTGCGAATTCAGAAATCGCA
* * *
1402820 -TTGTGAATTTGGAAA-TCGCGTTGCAAATT
1 GTTGCGAATTT-GAAATTCGAGTTGCGAATT
1402849 TGACTTCTGT
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
40 26 0.43
41 29 0.48
42 5 0.08
ACGTcount: A:0.31, C:0.13, G:0.25, T:0.32
Consensus pattern (41 bp):
GTTGCGAATTTGAAATTCGAGTTGCGAATTCAGAAATCGCA
Found at i:1402816 original size:61 final size:60
Alignment explanation
Indices: 1402719--1402851 Score: 160
Period size: 61 Copynumber: 2.2 Consensus size: 60
1402709 ATAAAACCTA
* *
1402719 TTGCGAAATTAAAATTCATGTTGCGAATTCGAAAATCG-AGTTGCGAATTCAGAAATCGAG
1 TTGCGAATTTGAAATTCATGTTGCGAATTCGAAAATCGCA-TTGCGAATTCAGAAATCGAG
* * * ** *
1402779 TTGCGAATTTGAAATTCAGTGTTGCGAATTTGGAAATCGCATTGTGAATTTGGAAATCGCG
1 TTGCGAATTTGAAATTCA-TGTTGCGAATTCGAAAATCGCATTGCGAATTCAGAAATCGAG
*
1402840 TTGCAAATTTGA
1 TTGCGAATTTGA
1402852 CTTCTGTTTT
Statistics
Matches: 62, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
60 16 0.26
61 45 0.73
62 1 0.02
ACGTcount: A:0.32, C:0.12, G:0.23, T:0.32
Consensus pattern (60 bp):
TTGCGAATTTGAAATTCATGTTGCGAATTCGAAAATCGCATTGCGAATTCAGAAATCGAG
Found at i:1403675 original size:182 final size:179
Alignment explanation
Indices: 1403443--1403805 Score: 537
Period size: 182 Copynumber: 2.0 Consensus size: 179
1403433 GATCCAAATT
* * **
1403443 AAAAATGTGTCGATCCAAAACGATATAACAGGTAAAACTATGACAAAACCGGTATTGAAATGATA
1 AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGACAAAACCGGTATCAAAATGATA
* * *
1403508 AAACCGGTAAAGCGCTACCGGATACATTTAAAGTGTCGGTACTTTAATATAAGGATCGACACTTC
66 AAACCGGTAAAACGCTACCGGATACATTGAAAGTGTCGATACTTT-ATATAAGGATCGACACTTC
* *
1403573 GTGAATTTAAAAGAGAAGCAGTTTTAAATCCTATAAAGTGTCGATACTTTAA
130 GTGAATTTAAAAGAGAAGCAGTTTTAAAGCCTAT-AA-TGTCGATACTATAA
* * * *
1403625 AAAAATGTATCGATCCAAAATGATATACCATGTAAAAATATGATAAAACCGGTATCAAAATGATA
1 AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGACAAAACCGGTATCAAAATGATA
* * *
1403690 AAACCGGTAAAACGTTACCGGATATATTGAAAGTGTCGATACTTTATATAAGGATCGACACTTTG
66 AAACCGGTAAAACGCTACCGGATACATTGAAAGTGTCGATACTTTATATAAGGATCGACACTTCG
**
1403755 TGAATTTAAAAGAGAAGCAGTTTTAGCGCCTATAATGTCGATACTATAA
131 TGAATTTAAAAGAGAAGCAGTTTTAAAGCCTATAATGTCGATACTATAA
1403804 AA
1 AA
1403806 TATGATAAAA
Statistics
Matches: 163, Mismatches: 18, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
179 15 0.09
180 2 0.01
181 49 0.30
182 97 0.60
ACGTcount: A:0.42, C:0.14, G:0.17, T:0.27
Consensus pattern (179 bp):
AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGACAAAACCGGTATCAAAATGATA
AAACCGGTAAAACGCTACCGGATACATTGAAAGTGTCGATACTTTATATAAGGATCGACACTTCG
TGAATTTAAAAGAGAAGCAGTTTTAAAGCCTATAATGTCGATACTATAA
Found at i:1403846 original size:17 final size:20
Alignment explanation
Indices: 1403807--1403849 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
1403797 ACTATAAAAT
1403807 ATGATAAAACCGGTATCAAA
1 ATGATAAAACCGGTATCAAA
1403827 ATGATAAAACC-G-AT-AAA
1 ATGATAAAACCGGTATCAAA
1403844 ATGATA
1 ATGATA
1403850 CCGGATGTCG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.39
18 2 0.09
19 1 0.04
20 11 0.48
ACGTcount: A:0.53, C:0.12, G:0.14, T:0.21
Consensus pattern (20 bp):
ATGATAAAACCGGTATCAAA
Found at i:1406078 original size:21 final size:21
Alignment explanation
Indices: 1406054--1406097 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
1406044 AAGATAATCA
1406054 AGAGTCGAAGAGAAACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
* *
1406075 AGAGTCGAAGATACACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
1406096 AG
1 AG
1406098 GCATAAAAGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.41, C:0.11, G:0.32, T:0.16
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTTGAG
Found at i:1406174 original size:33 final size:33
Alignment explanation
Indices: 1406132--1406197 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
1406122 AAATAGATGG
*
1406132 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
* *
1406165 AGTGGTGAAAGAAGTTGGGGTGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
1406198 TATTAAGATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.29, C:0.00, G:0.48, T:0.23
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
Found at i:1408012 original size:19 final size:19
Alignment explanation
Indices: 1407988--1408036 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
1407978 AATGTAGGGT
1407988 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
1408007 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
1408026 TAATTTTGTAT
1 TAATTTTGTAT
1408037 GTGAATAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.33, C:0.02, G:0.10, T:0.55
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:1410048 original size:200 final size:200
Alignment explanation
Indices: 1408268--1410028 Score: 3132
Period size: 200 Copynumber: 8.8 Consensus size: 200
1408258 AATTTACAAT
*
1408268 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATAT-AAAAGTGTCGATCCCAT-AACAT
1 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
* *
1408331 CGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGATTTT
66 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTT
1408396 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
131 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
1408461 AATGA
196 AATGA
* * *
1408466 ATGGCAAACAGGGTGCAACAATAAAATGTCGATCCATATATAAAAAGTGTCGATACGATAAACAT
1 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
*
1408531 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
66 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTT
* *
1408596 ATGAGAGAATAGGTCTACATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAT
131 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
1408661 AATGA
196 AATGA
*
1408666 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCTCATAAACAT
1 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
*
1408731 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
66 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTT
* *
1408796 ATGAGAGAATAGGTCTAAATAATGTGTCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAT
131 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
1408861 AATGA
196 AATGA
* *
1408866 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCAATCCCATAAACAT
1 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
* *
1408931 CGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGATTTT
66 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTT
1408996 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
131 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
1409061 AATGA
196 AATGA
* *
1409066 ATGGCAAACAAGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCGATAAACAT
1 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
1409131 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTT
66 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTT
* *
1409196 ATGAGAGAATATGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTTGTCCAG
131 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
1409261 AATGA
196 AATGA
* * * *
1409266 ATGGAAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAATGTATCGATCCGATAAACAT
1 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
*
1409331 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGATTTT
66 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTT
* *
1409396 ATGAGAGAATAGGTCTAAATAATATATCGACACTTTTGTAGTTTGTGTCAATATTTTTGGTCCAG
131 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
1409461 AATGA
196 AATGA
* *
1409466 ATGGCAAACATGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
1 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
*
1409531 CGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTT
66 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTT
1409596 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
131 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
1409661 AATGA
196 AATGA
*
1409666 ATGGCAAACAAGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
1 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
*
1409731 CGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTT
66 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTT
1409796 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
131 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
1409861 AATGA
196 AATGA
* **
1409866 ATGGCAAACAAGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCTGATAAACAT
1 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
* *
1409931 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCAGTTTT
66 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTT
* *
1409996 ATGAGAGAATTGGTATATAAT-ATGTATCGACAC
131 ATGAGAGAATAGGTCTA-AATAATGTATCGACAC
1410029 CGTTTAATAT
Statistics
Matches: 1501, Mismatches: 59, Indels: 4
0.96 0.04 0.00
Matches are distributed among these distances:
198 39 0.03
199 15 0.01
200 1444 0.96
201 3 0.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (200 bp):
ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTT
ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
AATGA
Found at i:1410447 original size:183 final size:183
Alignment explanation
Indices: 1410139--1410511 Score: 692
Period size: 183 Copynumber: 2.0 Consensus size: 183
1410129 TAGGTATAAA
* *
1410139 TGTGTCGGTACTTTATGTCCAGAATGGAATAAAAATGTGTCAATACCTTGTCAAAAAGTGTCGAC
1 TGTGTCGGTACTTTATGTCCAGAATAGAAGAAAAATGTGTCAATACCTTGTCAAAAAGTGTCGAC
* *
1410204 ATTTACATATCGGAACCTAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATA
66 ATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATA
*
1410269 TACCGGTTTTATGAGCGAATAGGTCTATAACCTATATCGACACTTTTTAATAT
131 TACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTTTAATAT
*
1410322 TGTGTCGGTACTTTATGTCCAGAATAGAAGAAAAATGTGTCGATACCTTGTCAAAAAGTGTCGAC
1 TGTGTCGGTACTTTATGTCCAGAATAGAAGAAAAATGTGTCAATACCTTGTCAAAAAGTGTCGAC
1410387 ATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATA
66 ATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATA
1410452 TACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTTTAATAT
131 TACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTTTAATAT
1410505 TGTGTCG
1 TGTGTCG
1410512 CTAATTTTAA
Statistics
Matches: 184, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
183 184 1.00
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.34
Consensus pattern (183 bp):
TGTGTCGGTACTTTATGTCCAGAATAGAAGAAAAATGTGTCAATACCTTGTCAAAAAGTGTCGAC
ATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATA
TACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTTTAATAT
Found at i:1413907 original size:23 final size:23
Alignment explanation
Indices: 1413851--1413907 Score: 69
Period size: 23 Copynumber: 2.4 Consensus size: 23
1413841 TTACTTATAA
*
1413851 AATATGTCAATATAAACGCTACCT
1 AATATGT-TATATAAACGCTACCT
* **
1413875 ATTACATTATATAAACGCTACCT
1 AATATGTTATATAAACGCTACCT
1413898 AATATGTTAT
1 AATATGTTAT
1413908 TGTACTTGAT
Statistics
Matches: 26, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
23 22 0.85
24 4 0.15
ACGTcount: A:0.40, C:0.18, G:0.07, T:0.35
Consensus pattern (23 bp):
AATATGTTATATAAACGCTACCT
Found at i:1417099 original size:21 final size:20
Alignment explanation
Indices: 1417064--1417103 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
1417054 ATGTAAAAGT
1417064 AAATTTTTTTATTACGACAG
1 AAATTTTTTTATTACGACAG
*
1417084 AAATTATTTTTGTTACGACA
1 AAATT-TTTTTATTACGACA
1417104 ACAATCACAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.35, C:0.10, G:0.10, T:0.45
Consensus pattern (20 bp):
AAATTTTTTTATTACGACAG
Found at i:1425660 original size:13 final size:13
Alignment explanation
Indices: 1425642--1425668 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1425632 CTTAAATCAT
1425642 TCCTATATATATA
1 TCCTATATATATA
1425655 TCCTATATATATA
1 TCCTATATATATA
1425668 T
1 T
1425669 ATATATAAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.15, G:0.00, T:0.48
Consensus pattern (13 bp):
TCCTATATATATA
Found at i:1432680 original size:18 final size:17
Alignment explanation
Indices: 1432648--1432681 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
1432638 TCAACCGGTC
1432648 CGATTTGAACGGTTCAA
1 CGATTTGAACGGTTCAA
*
1432665 CGATTCTGACCGGTTCA
1 CGATT-TGAACGGTTCA
1432682 CTAATAGTGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.29
Consensus pattern (17 bp):
CGATTTGAACGGTTCAA
Found at i:1437309 original size:23 final size:23
Alignment explanation
Indices: 1437283--1437351 Score: 93
Period size: 23 Copynumber: 3.0 Consensus size: 23
1437273 CACCACAGCT
*
1437283 CGTATAAATGCACCGAAGTGCCA
1 CGTAGAAATGCACCGAAGTGCCA
* * *
1437306 CGTAGAATTGCACCGTAGTGCCG
1 CGTAGAAATGCACCGAAGTGCCA
*
1437329 CGTAGAAATGCACCGAACTGCCA
1 CGTAGAAATGCACCGAAGTGCCA
1437352 TATAAGGTTG
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.30, C:0.28, G:0.25, T:0.17
Consensus pattern (23 bp):
CGTAGAAATGCACCGAAGTGCCA
Found at i:1442317 original size:23 final size:23
Alignment explanation
Indices: 1442291--1442359 Score: 102
Period size: 23 Copynumber: 3.0 Consensus size: 23
1442281 CACAACAGTT
*
1442291 CGTATAAATGCACCGAAGTGCCA
1 CGTAGAAATGCACCGAAGTGCCA
* *
1442314 CGTAGAATTGCACCGTAGTGCCA
1 CGTAGAAATGCACCGAAGTGCCA
*
1442337 CGTAGAAATGCACCGAAATGCCA
1 CGTAGAAATGCACCGAAGTGCCA
1442360 TATAAGGTTG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 40 1.00
ACGTcount: A:0.33, C:0.26, G:0.23, T:0.17
Consensus pattern (23 bp):
CGTAGAAATGCACCGAAGTGCCA
Found at i:1442759 original size:21 final size:21
Alignment explanation
Indices: 1442734--1442775 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
1442724 ATGTGTATTC
1442734 ATATA-AT-TCATCTTCCTAT
1 ATATATATATCATCTTCCTAT
*
1442753 ATATATATATCATTTTCCTAT
1 ATATATATATCATCTTCCTAT
1442774 AT
1 AT
1442776 TGTATTCAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 5 0.25
20 2 0.10
21 13 0.65
ACGTcount: A:0.33, C:0.17, G:0.00, T:0.50
Consensus pattern (21 bp):
ATATATATATCATCTTCCTAT
Found at i:1443388 original size:20 final size:21
Alignment explanation
Indices: 1443338--1443388 Score: 54
Period size: 20 Copynumber: 2.5 Consensus size: 21
1443328 TCAAAGATCT
* *
1443338 TATCA-CATAATTCTCTTTTA
1 TATCATCATAATTCTCTATCA
1443358 TATTCAT-ATAATT-TCTATCA
1 TA-TCATCATAATTCTCTATCA
1443378 TATCATCATAA
1 TATCATCATAA
1443389 CATGCATATA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
19 4 0.15
20 13 0.50
21 9 0.35
ACGTcount: A:0.35, C:0.18, G:0.00, T:0.47
Consensus pattern (21 bp):
TATCATCATAATTCTCTATCA
Found at i:1443815 original size:24 final size:20
Alignment explanation
Indices: 1443758--1443854 Score: 76
Period size: 19 Copynumber: 4.8 Consensus size: 20
1443748 TTTCCATTGA
*
1443758 AGTGCATCGATGCATTCTAC
1 AGTGCATCGATGCATCCTAC
*
1443778 AGTGTATCGATGCATCCCTTAAC
1 AGTGCATCGATGCAT-CC-T-AC
*
1443801 ATGTGCATCGATGCACTCCT-T
1 A-GTGCATCGATGCA-TCCTAC
*
1443822 A-TGCATCGATGCACTCCT-T
1 AGTGCATCGATGCA-TCCTAC
1443841 A-TGCATCGATGCAT
1 AGTGCATCGATGCAT
1443855 TAATTGCATT
Statistics
Matches: 68, Mismatches: 4, Indels: 12
0.81 0.05 0.14
Matches are distributed among these distances:
18 1 0.01
19 31 0.46
20 14 0.21
21 2 0.03
22 1 0.01
23 4 0.06
24 14 0.21
25 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (20 bp):
AGTGCATCGATGCATCCTAC
Found at i:1443828 original size:19 final size:19
Alignment explanation
Indices: 1443804--1443853 Score: 100
Period size: 19 Copynumber: 2.6 Consensus size: 19
1443794 CCTTAACATG
1443804 TGCATCGATGCACTCCTTA
1 TGCATCGATGCACTCCTTA
1443823 TGCATCGATGCACTCCTTA
1 TGCATCGATGCACTCCTTA
1443842 TGCATCGATGCA
1 TGCATCGATGCA
1443854 TTAATTGCAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.22, C:0.30, G:0.18, T:0.30
Consensus pattern (19 bp):
TGCATCGATGCACTCCTTA
Found at i:1444111 original size:21 final size:20
Alignment explanation
Indices: 1444073--1444111 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
1444063 TACACATGCT
*
1444073 TAAACCAATTTATATTCATA
1 TAAACCAATTTAGATTCATA
*
1444093 TAAACCATATTTAGCTTCA
1 TAAACCA-ATTTAGATTCA
1444112 AAATTCTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.41, C:0.18, G:0.03, T:0.38
Consensus pattern (20 bp):
TAAACCAATTTAGATTCATA
Found at i:1449000 original size:13 final size:13
Alignment explanation
Indices: 1448982--1449007 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1448972 ACTTTAGTTG
1448982 TCTGTTGTTTATT
1 TCTGTTGTTTATT
1448995 TCTGTTGTTTATT
1 TCTGTTGTTTATT
1449008 GTACGATGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.08, G:0.15, T:0.69
Consensus pattern (13 bp):
TCTGTTGTTTATT
Found at i:1450896 original size:33 final size:32
Alignment explanation
Indices: 1450832--1450896 Score: 76
Period size: 33 Copynumber: 2.0 Consensus size: 32
1450822 ATTTTAAATT
* *
1450832 TAAATTATACAAATATAGAAAAAAATATAAAA
1 TAAATTATAAAAATAAAGAAAAAAATATAAAA
* * *
1450864 TAAATTACTAAAAATAAATAAATAAATTTAAAA
1 TAAATTA-TAAAAATAAAGAAAAAAATATAAAA
1450897 ATTTTAAAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
32 7 0.26
33 20 0.74
ACGTcount: A:0.68, C:0.03, G:0.02, T:0.28
Consensus pattern (32 bp):
TAAATTATAAAAATAAAGAAAAAAATATAAAA
Found at i:1471731 original size:29 final size:28
Alignment explanation
Indices: 1471689--1471769 Score: 112
Period size: 28 Copynumber: 2.9 Consensus size: 28
1471679 ATTGTTCAGA
1471689 TGCTATTCTGGTAATTATTTGGAAAAAGG
1 TGCTATTCTGGTAATTATTT-GAAAAAGG
*
1471718 TGCTATTCTGGTAATTATTTTAAAAAGG
1 TGCTATTCTGGTAATTATTTGAAAAAGG
* *
1471746 TGCTATTTTCGTAATT-TTT-AAAAA
1 TGCTATTCTGGTAATTATTTGAAAAA
1471770 TAAATAATTT
Statistics
Matches: 49, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
26 5 0.10
27 3 0.06
28 21 0.43
29 20 0.41
ACGTcount: A:0.32, C:0.07, G:0.17, T:0.43
Consensus pattern (28 bp):
TGCTATTCTGGTAATTATTTGAAAAAGG
Found at i:1471751 original size:28 final size:28
Alignment explanation
Indices: 1471689--1471769 Score: 112
Period size: 29 Copynumber: 2.9 Consensus size: 28
1471679 ATTGTTCAGA
*
1471689 TGCTATTCTGGTAATTATTTGGAAAAAGG
1 TGCTATTCTGGTAATTATTT-TAAAAAGG
1471718 TGCTATTCTGGTAATTATTTTAAAAAGG
1 TGCTATTCTGGTAATTATTTTAAAAAGG
* *
1471746 TGCTATTTTCGTAA-T-TTTTAAAAA
1 TGCTATTCTGGTAATTATTTTAAAAA
1471770 TAAATAATTT
Statistics
Matches: 49, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
26 9 0.18
27 1 0.02
28 19 0.39
29 20 0.41
ACGTcount: A:0.32, C:0.07, G:0.17, T:0.43
Consensus pattern (28 bp):
TGCTATTCTGGTAATTATTTTAAAAAGG
Found at i:1471796 original size:28 final size:28
Alignment explanation
Indices: 1471760--1471826 Score: 84
Period size: 28 Copynumber: 2.4 Consensus size: 28
1471750 ATTTTCGTAA
1471760 TTTTTAAAAATAA-ATAATTTAGTAATTT
1 TTTTTAAAAATAAGATAATTTAGTAA-TT
*
1471788 TTTTTAAAAA-AATGATATTTTAGTAATT
1 TTTTTAAAAATAA-GATAATTTAGTAATT
*
1471816 ATTTTAAAAAT
1 TTTTTAAAAAT
1471827 TGTGATATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
27 2 0.06
28 21 0.62
29 11 0.32
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.49
Consensus pattern (28 bp):
TTTTTAAAAATAAGATAATTTAGTAATT
Found at i:1471809 original size:29 final size:30
Alignment explanation
Indices: 1471760--1471871 Score: 108
Period size: 29 Copynumber: 3.9 Consensus size: 30
1471750 ATTTTCGTAA
*
1471760 TTTTTAAAAATAA--ATAATTTAGTAATTT
1 TTTTTAAAAATAATGATATTTTAGTAATTT
1471788 TTTTTAAAAA-AATGATATTTTAGTAA-TT
1 TTTTTAAAAATAATGATATTTTAGTAATTT
* ** * *
1471816 ATTTTAAAAATTGTGATATTTTGGTAATTG
1 TTTTTAAAAATAATGATATTTTAGTAATTT
* * *
1471846 TTTTTGAAAAT-ATGCTATTTTCGTAA
1 TTTTTAAAAATAATGATATTTTAGTAA
1471872 AATGATTGTT
Statistics
Matches: 69, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
27 2 0.03
28 21 0.30
29 36 0.52
30 10 0.14
ACGTcount: A:0.38, C:0.02, G:0.10, T:0.50
Consensus pattern (30 bp):
TTTTTAAAAATAATGATATTTTAGTAATTT
Found at i:1478984 original size:28 final size:29
Alignment explanation
Indices: 1478911--1478986 Score: 118
Period size: 29 Copynumber: 2.7 Consensus size: 29
1478901 ACCGTTAACC
1478911 GGGTGCTATTCTGGTAATTATTTAGAAAA
1 GGGTGCTATTCTGGTAATTATTTAGAAAA
*
1478940 GGGTGCTATTCTGGTAATTATTTGGAAAA
1 GGGTGCTATTCTGGTAATTATTTAGAAAA
* *
1478969 -GGTGCTATTTTTGTAATT
1 GGGTGCTATTCTGGTAATT
1478987 TAAAAAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
28 16 0.36
29 28 0.64
ACGTcount: A:0.26, C:0.07, G:0.25, T:0.42
Consensus pattern (29 bp):
GGGTGCTATTCTGGTAATTATTTAGAAAA
Found at i:1493658 original size:23 final size:23
Alignment explanation
Indices: 1493640--1493700 Score: 104
Period size: 23 Copynumber: 2.7 Consensus size: 23
1493630 CTCATATAAA
*
1493640 TGCACCGAAGTGCCACATAGAAT
1 TGCACCGTAGTGCCACATAGAAT
*
1493663 TGCACCGTAGTGCCACGTAGAAT
1 TGCACCGTAGTGCCACATAGAAT
1493686 TGCACCGTAGTGCCA
1 TGCACCGTAGTGCCA
1493701 TATAACAATG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.28, C:0.28, G:0.25, T:0.20
Consensus pattern (23 bp):
TGCACCGTAGTGCCACATAGAAT
Found at i:1493833 original size:18 final size:18
Alignment explanation
Indices: 1493810--1493845 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
1493800 GAATACATAT
1493810 ATGTCCCAAAGGACCACA
1 ATGTCCCAAAGGACCACA
*
1493828 ATGTCCCGAAGGACCACA
1 ATGTCCCAAAGGACCACA
1493846 TATCATTCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.36, C:0.33, G:0.19, T:0.11
Consensus pattern (18 bp):
ATGTCCCAAAGGACCACA
Found at i:1494026 original size:119 final size:120
Alignment explanation
Indices: 1493705--1494065 Score: 631
Period size: 119 Copynumber: 3.0 Consensus size: 120
1493695 GTGCCATATA
*
1493705 ACAATGTCCCGAAGGACCACATATCATTGCTTAAGAATCATATACATATGCTAGGGATC-AGTAT
1 ACAATGTCCCGAAGGACCACA-ATCATTCCTTAAGAATCATATACATATGCTAGGGATCAAGTAT
* *
1493769 GCGTCTCACCAGACTTCACACATGTTCCAAAGAATACATATATGTCCCAAAGGACC
65 GTGTCTCACCAGACTTCACACATGTTCCAAAGAATACATATATGTCCCGAAGGACC
1493825 ACAATGTCCCGAAGGACCACATATCATTCCTTAAGAATCATATACATATGCTA-GGATCAAGTAT
1 ACAATGTCCCGAAGGACCACA-ATCATTCCTTAAGAATCATATACATATGCTAGGGATCAAGTAT
1493889 GTGTCTCACCAGAC-TCACACATGTTCCAAAGAATACATATATGTCCCGAAGGACC
65 GTGTCTCACCAGACTTCACACATGTTCCAAAGAATACATATATGTCCCGAAGGACC
*
1493944 ACAATATCCCGAAGGACCAC-ATCATTCCTTAAGAATCATATACATATGCTAGGGATCAAGTATG
1 ACAATGTCCCGAAGGACCACAATCATTCCTTAAGAATCATATACATATGCTAGGGATCAAGTATG
*
1494008 TGTCTCACCAGACTTCACACATGTTCCAAAGAATACATATATGTCCCGAAGGATC
66 TGTCTCACCAGACTTCACACATGTTCCAAAGAATACATATATGTCCCGAAGGACC
1494063 ACA
1 ACA
1494066 TAGACCCTCG
Statistics
Matches: 233, Mismatches: 5, Indels: 7
0.95 0.02 0.03
Matches are distributed among these distances:
117 31 0.13
118 25 0.11
119 107 0.46
120 70 0.30
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.24
Consensus pattern (120 bp):
ACAATGTCCCGAAGGACCACAATCATTCCTTAAGAATCATATACATATGCTAGGGATCAAGTATG
TGTCTCACCAGACTTCACACATGTTCCAAAGAATACATATATGTCCCGAAGGACC
Found at i:1495396 original size:63 final size:63
Alignment explanation
Indices: 1495266--1495421 Score: 188
Period size: 63 Copynumber: 2.5 Consensus size: 63
1495256 TGGAGGCATG
* * * * *
1495266 CATCGATGCACTCCTGATGCATCGATGCACTGAGGGCATTCGATGTTCATTTTATTAGAAATG
1 CATCGATGCACTCCTTATGCATCGATGCACTGACGACATTCGATGTTCATTTTATAAGAAATA
** **
1495329 CATCGATGCACTCCTTATGCATCGATGCACTGACGACATTCGATGTTTGTATTTA-AATTAATA
1 CATCGATGCACTCCTTATGCATCGATGCACTGACGACATTCGATGTTCAT-TTTATAAGAAATA
* * *
1495392 CATCGATGCACTTCATATTCATCGATGCAC
1 CATCGATGCACTCCTTATGCATCGATGCAC
1495422 CTTCAACAAA
Statistics
Matches: 80, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
63 76 0.95
64 4 0.05
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (63 bp):
CATCGATGCACTCCTTATGCATCGATGCACTGACGACATTCGATGTTCATTTTATAAGAAATA
Found at i:1499245 original size:23 final size:23
Alignment explanation
Indices: 1499195--1499267 Score: 96
Period size: 23 Copynumber: 3.3 Consensus size: 23
1499185 CACCACAACT
* *
1499195 CATATA-AA-TGCACCGAAGTGT
1 CATATAGAATTGCACCGTAGTGC
*
1499216 CACATAGAATTGCACCGTAGTGC
1 CATATAGAATTGCACCGTAGTGC
*
1499239 CGTATAGAATTGCACCGTAGTGC
1 CATATAGAATTGCACCGTAGTGC
1499262 CATATA
1 CATATA
1499268 ACAATGTCCC
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
21 5 0.11
22 2 0.05
23 37 0.84
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.25
Consensus pattern (23 bp):
CATATAGAATTGCACCGTAGTGC
Found at i:1499397 original size:18 final size:18
Alignment explanation
Indices: 1499374--1499409 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
1499364 GAATACATAT
1499374 ATGTCCCAAAGGACCACA
1 ATGTCCCAAAGGACCACA
*
1499392 ATGTCCCGAAGGACCACA
1 ATGTCCCAAAGGACCACA
1499410 TATCATTCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.36, C:0.33, G:0.19, T:0.11
Consensus pattern (18 bp):
ATGTCCCAAAGGACCACA
Found at i:1499478 original size:117 final size:119
Alignment explanation
Indices: 1499268--1499623 Score: 602
Period size: 117 Copynumber: 3.0 Consensus size: 119
1499258 GTGCCATATA
1499268 ACAATGTCCCGAAGGACCACATATCATTCCTTAAGAATCATATACATATGCTAGGGATCAAGTAT
1 ACAATGTCCCGAAGGACCACATATCATTCCTTAAGAATCA-ATA-ATATGCTAGGGATCAAGTAT
* *
1499333 GCGTCTCACCAGACTTCACACATGTTCCAAAGAATACATATATGTCCCAAAGGACC
64 GTGTCTCACCAGACTTCACACATGTTCCAAAGAATACATATATGTCCCGAAGGACC
1499389 ACAATGTCCCGAAGGACCACATATCATTCCTTAAGAATC-AT-ATATGCTAGGGATCAAGTATGT
1 ACAATGTCCCGAAGGACCACATATCATTCCTTAAGAATCAATAATATGCTAGGGATCAAGTATGT
1499452 GTCTCACCAGACTTCACACATGTTCCAAAGAATAC--ATATGTCCCGAAGGACC
66 GTCTCACCAGACTTCACACATGTTCCAAAGAATACATATATGTCCCGAAGGACC
1499504 ACAATGT-CCGAAGGACCACATATCATTCCTTAAGAATCATATACATATGCTAGGGATCAAGTAT
1 ACAATGTCCCGAAGGACCACATATCATTCCTTAAGAATCA-ATA-ATATGCTAGGGATCAAGTAT
1499568 GTGTCTCACCAGACTTCA-ACATGTTCCAAAGAAT--ATATATGTCCCGAAGGACC
64 GTGTCTCACCAGACTTCACACATGTTCCAAAGAATACATATATGTCCCGAAGGACC
1499621 ACA
1 ACA
1499624 TAGACCCTCG
Statistics
Matches: 227, Mismatches: 2, Indels: 16
0.93 0.01 0.07
Matches are distributed among these distances:
114 31 0.14
115 23 0.10
116 2 0.01
117 92 0.41
118 38 0.17
119 2 0.01
121 39 0.17
ACGTcount: A:0.35, C:0.25, G:0.16, T:0.24
Consensus pattern (119 bp):
ACAATGTCCCGAAGGACCACATATCATTCCTTAAGAATCAATAATATGCTAGGGATCAAGTATGT
GTCTCACCAGACTTCACACATGTTCCAAAGAATACATATATGTCCCGAAGGACC
Found at i:1499516 original size:17 final size:18
Alignment explanation
Indices: 1499489--1499523 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
1499479 AAGAATACAT
1499489 ATGTCCCGAAGGACCACA
1 ATGTCCCGAAGGACCACA
1499507 ATGT-CCGAAGGACCACA
1 ATGTCCCGAAGGACCACA
1499524 TATCATTCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.34, C:0.31, G:0.23, T:0.11
Consensus pattern (18 bp):
ATGTCCCGAAGGACCACA
Found at i:1500934 original size:63 final size:63
Alignment explanation
Indices: 1500827--1500985 Score: 187
Period size: 63 Copynumber: 2.5 Consensus size: 63
1500817 TAATGGAGGC
* * * ** *
1500827 ATGCATCGATGCACTCCTGATGCATCGATGCACTGAGGGTATTCGATGTTCAT-TTTATTAGAA
1 ATGCATCGATGCACTCTTTATGCATCGATGCACTGACGACATTCGATGTTCATATTTA-AAGAA
** **
1500890 ATGCATCGATGCACTCTTTATGCATCGATGCACTGACGACATTCGATGTTTGTATTTAAATTA
1 ATGCATCGATGCACTCTTTATGCATCGATGCACTGACGACATTCGATGTTCATATTTAAAGAA
*
1500953 ATGCATCGATGCACT-TCATATGCATCGATGCAC
1 ATGCATCGATGCACTCT-TTATGCATCGATGCAC
1500986 CTTCAACAAA
Statistics
Matches: 83, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
62 1 0.01
63 78 0.94
64 4 0.05
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.33
Consensus pattern (63 bp):
ATGCATCGATGCACTCTTTATGCATCGATGCACTGACGACATTCGATGTTCATATTTAAAGAA
Found at i:1500977 original size:19 final size:20
Alignment explanation
Indices: 1500953--1500990 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
1500943 ATTTAAATTA
1500953 ATGCATCGATGCA-CTTCAT
1 ATGCATCGATGCACCTTCAT
1500972 ATGCATCGATGCACCTTCA
1 ATGCATCGATGCACCTTCA
1500991 ACAAATTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.29
Consensus pattern (20 bp):
ATGCATCGATGCACCTTCAT
Found at i:1502881 original size:64 final size:65
Alignment explanation
Indices: 1502811--1502990 Score: 247
Period size: 65 Copynumber: 2.8 Consensus size: 65
1502801 CGGAACACTT
* * * *
1502811 AGTGCATCGGTGCACT-AAGTGTGCATCGATGCATAAAATGCATTCGATGTTTTGAAT-AAGCCT
1 AGTGCATCGATGCA-TGGAGTGTGCATCGATGCATAAAATGCATTCGATGTTTTCAATAAAACCT
1502874 A
65 A
* * *
1502875 AGTGCATCGATGCATGGTGTGTGCATCGATGCATAAAATGCATTCGATGTTTTCATTAAAACCTG
1 AGTGCATCGATGCATGGAGTGTGCATCGATGCATAAAATGCATTCGATGTTTTCAATAAAACCTA
* * *
1502940 AGTGCATCGATGCATGGAGAGTGCATCAATGCATAAACTGCATTCGATGTT
1 AGTGCATCGATGCATGGAGTGTGCATCGATGCATAAAATGCATTCGATGTT
1502991 CAATTTATTC
Statistics
Matches: 103, Mismatches: 11, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
63 1 0.01
64 50 0.49
65 52 0.50
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (65 bp):
AGTGCATCGATGCATGGAGTGTGCATCGATGCATAAAATGCATTCGATGTTTTCAATAAAACCTA
Found at i:1505661 original size:21 final size:23
Alignment explanation
Indices: 1505608--1505662 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 23
1505598 CCGATGCACT
1505608 CATCGATGCACATTCAAGGAGTG
1 CATCGATGCACATTCAAGGAGTG
* * *
1505631 CATCGGTGCACCTTC-ATG-GTG
1 CATCGATGCACATTCAAGGAGTG
*
1505652 TATCGATGCAC
1 CATCGATGCAC
1505663 TGTTAAGTGT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
21 12 0.44
22 2 0.07
23 13 0.48
ACGTcount: A:0.24, C:0.25, G:0.25, T:0.25
Consensus pattern (23 bp):
CATCGATGCACATTCAAGGAGTG
Found at i:1509539 original size:34 final size:34
Alignment explanation
Indices: 1509486--1509589 Score: 167
Period size: 34 Copynumber: 3.1 Consensus size: 34
1509476 CCTTACAAAC
* *
1509486 TCCCTAG-TTTTTC-CGGGCTAAACTAGAACCTT
1 TCCCTAGCTTTTACACGGGCTAAGCTAGAACCTT
1509518 TCCCTAGCTTTTACACGGGCTAAGCTAGAACCTT
1 TCCCTAGCTTTTACACGGGCTAAGCTAGAACCTT
*
1509552 TCCCTAGCTTTTACACGGGCTAGGCTAGAACCTT
1 TCCCTAGCTTTTACACGGGCTAAGCTAGAACCTT
1509586 TCCC
1 TCCC
1509590 CTTTACAAAA
Statistics
Matches: 67, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
32 7 0.10
33 5 0.07
34 55 0.82
ACGTcount: A:0.21, C:0.31, G:0.17, T:0.31
Consensus pattern (34 bp):
TCCCTAGCTTTTACACGGGCTAAGCTAGAACCTT
Found at i:1509962 original size:20 final size:20
Alignment explanation
Indices: 1509937--1509978 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
1509927 CCGTTAGACA
*
1509937 GGGGGAATCGGTACCCCCTG
1 GGGGGAATCGGTACCCCATG
*
1509957 GGGGGAATCTGTACCCCATG
1 GGGGGAATCGGTACCCCATG
1509977 GG
1 GG
1509979 CAATCTGATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.17, C:0.26, G:0.40, T:0.17
Consensus pattern (20 bp):
GGGGGAATCGGTACCCCATG
Found at i:1512542 original size:64 final size:65
Alignment explanation
Indices: 1512472--1512597 Score: 200
Period size: 64 Copynumber: 2.0 Consensus size: 65
1512462 GGTGCACTAA
* *
1512472 GTGTGCATCGATGCATAAAATGCATTCGATGTTTTGAAT-AAGCCTAAGTGCATCGATGCATTGT
1 GTGTGCATCGATGCATAAAATGCATTCGATGTTTTCAATAAAACCTAAGTGCATCGATGCATTGT
* * *
1512536 GTGTGCATCGATGCATAAAATGTATTCGATGTTTTCATTAAAACCTGAGTGCATCGATGCAT
1 GTGTGCATCGATGCATAAAATGCATTCGATGTTTTCAATAAAACCTAAGTGCATCGATGCAT
1512598 AAACTGCATT
Statistics
Matches: 56, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
64 36 0.64
65 20 0.36
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (65 bp):
GTGTGCATCGATGCATAAAATGCATTCGATGTTTTCAATAAAACCTAAGTGCATCGATGCATTGT
Found at i:1512611 original size:64 final size:64
Alignment explanation
Indices: 1512475--1512612 Score: 163
Period size: 64 Copynumber: 2.2 Consensus size: 64
1512465 GCACTAAGTG
* * ****
1512475 TGCATCGATGCATAAAATGCATTCGATGTTTTGAATAAGCCTAAGTGCATCGATGCATTGTGTG
1 TGCATCGATGCATAAAATGCATTCGATGTTTTCAATAAACCTAAGTGCATCGATGCATTGAAAC
* * *
1512539 TGCATCGATGCATAAAATGTATTCGATGTTTTCATTAAAACCTGAGTGCATCGATGCA-T-AAAC
1 TGCATCGATGCATAAAATGCATTCGATGTTTTCAAT-AAACCTAAGTGCATCGATGCATTGAAAC
1512602 TGCATTCGATG
1 TGCA-TCGATG
1512613 TTCAATTTAT
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
63 4 0.06
64 40 0.63
65 19 0.30
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.33
Consensus pattern (64 bp):
TGCATCGATGCATAAAATGCATTCGATGTTTTCAATAAACCTAAGTGCATCGATGCATTGAAAC
Found at i:1534368 original size:24 final size:24
Alignment explanation
Indices: 1534323--1534369 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
1534313 TCCATAAATT
* *
1534323 ACTCAATAAATGAGTTTATAAACG
1 ACTCAATAAATAACTTTATAAACG
1534347 ACTCAATAAACTAACTTT-TAAAC
1 ACTCAATAAA-TAACTTTATAAAC
1534370 AAGTTTCTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 15 0.75
25 5 0.25
ACGTcount: A:0.47, C:0.17, G:0.06, T:0.30
Consensus pattern (24 bp):
ACTCAATAAATAACTTTATAAACG
Found at i:1534423 original size:14 final size:14
Alignment explanation
Indices: 1534404--1534431 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
1534394 ACCGAACACA
1534404 CATCTATTCGTATT
1 CATCTATTCGTATT
1534418 CATCTATTCGTATT
1 CATCTATTCGTATT
1534432 TATTTGTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.21, G:0.07, T:0.50
Consensus pattern (14 bp):
CATCTATTCGTATT
Found at i:1541304 original size:21 final size:23
Alignment explanation
Indices: 1541279--1541325 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
1541269 TGATAATTTT
*
1541279 AAAATTTTA-TTTT-AAAAAATA
1 AAAATATTATTTTTAAAAAAATA
1541300 AAAATATTATTTTTAAAAAAATA
1 AAAATATTATTTTTAAAAAAATA
1541323 AAA
1 AAA
1541326 TTTATAAGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 8 0.35
22 4 0.17
23 11 0.48
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (23 bp):
AAAATATTATTTTTAAAAAAATA
Found at i:1541330 original size:21 final size:21
Alignment explanation
Indices: 1541278--1541331 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 21
1541268 CTGATAATTT
1541278 TAAAATTT-TATTTTAAAAAA
1 TAAAATTTATATTTTAAAAAA
1541298 TAAAAATATTAT-TTTTAAAAAAA
1 T-AAAAT-TTATATTTT-AAAAAA
1541321 TAAAATTTATA
1 TAAAATTTATA
1541332 AGTTTTTCAA
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
20 1 0.03
21 9 0.31
22 11 0.38
23 8 0.28
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (21 bp):
TAAAATTTATATTTTAAAAAA
Found at i:1541562 original size:21 final size:21
Alignment explanation
Indices: 1541536--1541590 Score: 101
Period size: 21 Copynumber: 2.6 Consensus size: 21
1541526 GGATTTAGGG
1541536 TTGATTTGCGCACAAGTAAGA
1 TTGATTTGCGCACAAGTAAGA
1541557 TTGATTTGCGCACAAGTAAGA
1 TTGATTTGCGCACAAGTAAGA
*
1541578 TTGATTAGCGCAC
1 TTGATTTGCGCAC
1541591 CAATCAAATC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (21 bp):
TTGATTTGCGCACAAGTAAGA
Found at i:1543516 original size:11 final size:12
Alignment explanation
Indices: 1543469--1543520 Score: 54
Period size: 11 Copynumber: 4.3 Consensus size: 12
1543459 ATTATTTCCA
*
1543469 ATTTGATTTTTA
1 ATTTGATTTTTT
1543481 ATTTGATTTTTT
1 ATTTGATTTTTT
*
1543493 -TTTCATTCCTTTT
1 ATTTGATT--TTTT
1543506 ATTT-ATTTTTT
1 ATTTGATTTTTT
1543517 ATTT
1 ATTT
1543521 CAATCTTAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
11 14 0.40
12 11 0.31
13 7 0.20
14 3 0.09
ACGTcount: A:0.17, C:0.06, G:0.04, T:0.73
Consensus pattern (12 bp):
ATTTGATTTTTT
Found at i:1545855 original size:27 final size:26
Alignment explanation
Indices: 1545825--1545890 Score: 64
Period size: 27 Copynumber: 2.5 Consensus size: 26
1545815 TAATCTTTAG
1545825 TTCTTTGAATATTAAATGAATTA-AATA
1 TTCTTTGAATATTAAA-GAATTATAA-A
* *
1545852 TTCTTTTAATTCTTAAAGAATTATAAA
1 TTCTTTGAA-TATTAAAGAATTATAAA
1545879 TT-TTTGACATAT
1 TTCTTTGA-ATAT
1545891 GGCAAGATCA
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
26 6 0.19
27 18 0.56
28 8 0.25
ACGTcount: A:0.39, C:0.06, G:0.06, T:0.48
Consensus pattern (26 bp):
TTCTTTGAATATTAAAGAATTATAAA
Found at i:1548243 original size:20 final size:20
Alignment explanation
Indices: 1548207--1548325 Score: 157
Period size: 20 Copynumber: 5.9 Consensus size: 20
1548197 GAATGTCCAA
*
1548207 GGGGTACAGATTCCCCCCCAG
1 GGGGAACAGATT-CCCCCCAG
* *
1548228 GGGGTACCGATTCCCCCCAG
1 GGGGAACAGATTCCCCCCAG
*
1548248 GGGGAACAGATTCCCCTCAG
1 GGGGAACAGATTCCCCCCAG
* *
1548268 GGGGTACCGATTCCCCCCAG
1 GGGGAACAGATTCCCCCCAG
*
1548288 GGGGAACAGATTCCCCTCAG
1 GGGGAACAGATTCCCCCCAG
*
1548308 GGGGAACCGATTCCCCCC
1 GGGGAACAGATTCCCCCC
1548326 TGTCTAACGG
Statistics
Matches: 86, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
20 75 0.87
21 11 0.13
ACGTcount: A:0.19, C:0.37, G:0.29, T:0.14
Consensus pattern (20 bp):
GGGGAACAGATTCCCCCCAG
Found at i:1548250 original size:40 final size:40
Alignment explanation
Indices: 1548207--1548325 Score: 202
Period size: 40 Copynumber: 3.0 Consensus size: 40
1548197 GAATGTCCAA
* *
1548207 GGGGTACAGATTCCCCCCCAGGGGGTACCGATTCCCCCCAG
1 GGGGAACAGATT-CCCCTCAGGGGGTACCGATTCCCCCCAG
1548248 GGGGAACAGATTCCCCTCAGGGGGTACCGATTCCCCCCAG
1 GGGGAACAGATTCCCCTCAGGGGGTACCGATTCCCCCCAG
*
1548288 GGGGAACAGATTCCCCTCAGGGGGAACCGATTCCCCCC
1 GGGGAACAGATTCCCCTCAGGGGGTACCGATTCCCCCC
1548326 TGTCTAACGG
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
40 64 0.85
41 11 0.15
ACGTcount: A:0.19, C:0.37, G:0.29, T:0.14
Consensus pattern (40 bp):
GGGGAACAGATTCCCCTCAGGGGGTACCGATTCCCCCCAG
Found at i:1548291 original size:60 final size:61
Alignment explanation
Indices: 1548207--1548323 Score: 182
Period size: 60 Copynumber: 1.9 Consensus size: 61
1548197 GAATGTCCAA
* *
1548207 GGGGTACAGATTCCCCCCCAGGGGGTACCGATTCCCCCCAGGGGGAACAGATTCCCCTCAG
1 GGGGTACAGATTCCCCCCCAGGGGGAACAGATTCCCCCCAGGGGGAACAGATTCCCCTCAG
* * *
1548268 GGGGTACCGATT-CCCCCCAGGGGGAACAGATTCCCCTCAGGGGGAACCGATTCCCC
1 GGGGTACAGATTCCCCCCCAGGGGGAACAGATTCCCCCCAGGGGGAACAGATTCCCC
1548324 CCTGTCTAAC
Statistics
Matches: 51, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
60 40 0.78
61 11 0.22
ACGTcount: A:0.20, C:0.36, G:0.30, T:0.15
Consensus pattern (61 bp):
GGGGTACAGATTCCCCCCCAGGGGGAACAGATTCCCCCCAGGGGGAACAGATTCCCCTCAG
Found at i:1551458 original size:18 final size:18
Alignment explanation
Indices: 1551423--1551461 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
1551413 AGAGCAGCAC
*
1551423 GAGGAACAAGCACCTCCA
1 GAGGAACAACCACCTCCA
* *
1551441 GAGGAACAACCTCGTCCA
1 GAGGAACAACCACCTCCA
1551459 GAG
1 GAG
1551462 TATCAAATGC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.36, C:0.31, G:0.26, T:0.08
Consensus pattern (18 bp):
GAGGAACAACCACCTCCA
Found at i:1551755 original size:17 final size:16
Alignment explanation
Indices: 1551726--1551791 Score: 64
Period size: 16 Copynumber: 4.1 Consensus size: 16
1551716 CATTTTGGAT
*
1551726 ATTTTGGAATGTTTGA
1 ATTTTGGATTGTTTGA
1551742 ATTTGTGGATTGTTTG-
1 ATTT-TGGATTGTTTGA
* *
1551758 ACTTTGAATTTGTTTGA
1 ATTTTGGA-TTGTTTGA
1551775 ATTTATGGA-TGTTTGA
1 ATTT-TGGATTGTTTGA
1551791 A
1 A
1551792 CTTATATTTC
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
15 3 0.07
16 22 0.54
17 13 0.32
18 3 0.07
ACGTcount: A:0.23, C:0.02, G:0.24, T:0.52
Consensus pattern (16 bp):
ATTTTGGATTGTTTGA
Found at i:1552435 original size:22 final size:20
Alignment explanation
Indices: 1552407--1552464 Score: 89
Period size: 20 Copynumber: 2.8 Consensus size: 20
1552397 TTGTCTAGGA
1552407 GGTACAGATTCTCCCCCAAGGG
1 GGTACAGATTC-CCCCC-AGGG
1552429 GGTACAGATTCCCCCCAGGG
1 GGTACAGATTCCCCCCAGGG
*
1552449 GGAACAGATTCCCCCC
1 GGTACAGATTCCCCCC
1552465 TGTCTAATGG
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
20 19 0.54
21 5 0.14
22 11 0.31
ACGTcount: A:0.22, C:0.36, G:0.26, T:0.16
Consensus pattern (20 bp):
GGTACAGATTCCCCCCAGGG
Found at i:1553677 original size:100 final size:102
Alignment explanation
Indices: 1553536--1553730 Score: 250
Period size: 100 Copynumber: 1.9 Consensus size: 102
1553526 CCCACGAGAC
* * * * * *
1553536 AACACGAGCTCAACTTCACAGCGAAGGGGCGACTGATTGTCAACAAATAA-C-TTTTCAGATTCA
1 AACACAAGCTCAACTTCACAGCGAAGAGGCGACTGACTGTCAACAAACAATCAGTTTCAGAGTCA
*
1553599 ATTTCAACTTCACGTCGAAGGATATTAGACTCAAGAT
66 ATTTCAACTTCACGGCGAAGGATATTAGACTCAAGAT
* * *
1553636 AACACAAGCTCAACTTCACAGCGAAGAGGCGGCTGGCTGTCAAGAAACAATTTTCCAGTTTCAGA
1 AACACAAGCTCAACTTCACAGCGAAGAGGCGACTGACTGTCAACAAACAA---T-CAGTTTCAGA
1553701 GTCAATTTCAACTTCACGGCGAAGGATATT
62 GTCAATTTCAACTTCACGGCGAAGGATATT
1553731 GGCCTCGAAA
Statistics
Matches: 79, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
100 43 0.54
105 1 0.01
106 35 0.44
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.24
Consensus pattern (102 bp):
AACACAAGCTCAACTTCACAGCGAAGAGGCGACTGACTGTCAACAAACAATCAGTTTCAGAGTCA
ATTTCAACTTCACGGCGAAGGATATTAGACTCAAGAT
Found at i:1553887 original size:84 final size:84
Alignment explanation
Indices: 1553788--1554475 Score: 884
Period size: 84 Copynumber: 8.2 Consensus size: 84
1553778 GAATCGTGCG
* * * * * *
1553788 AACCAAAGACTTTCGAGTTCGACTGCACTCAGCTCAAAGGCACATCATTTGCAACATAGTTTAAG
1 AACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAACATAGCTCAAG
***
1553853 TTGAGAAGGGTTATCTGCT
66 GCAAGAAGGGTTATCTGCT
* *
1553872 AACCAAATACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAACATAACTCAAG
1 AACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAACATAGCTCAAG
* *
1553937 GCTAGAAGGGTTATCTGCC
66 GCAAGAAGGGTTATCTGCT
*
1553956 AACAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAACATAGCTCAAG
1 AACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAACATAGCTCAAG
1554021 GCAAGAAGGGTTATCTGCT
66 GCAAGAAGGGTTATCTGCT
* * * *
1554040 AACCGAAGACCTTCGAGTTCGACTACGCTCAGCTACAAGGCACATCATTTGTAACATATCTCAAG
1 AACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAACATAGCTCAAG
* * *
1554105 GCAAGAACGGCTATTTG-T
66 GCAAGAAGGGTTATCTGCT
* * * * *
1554123 CAACC-ATGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCAA
1 -AACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAACATAGCTCAA
*
1554187 GGCAAGAAGGGTTATCTGCC
65 GGCAAGAAGGGTTATCTGCT
* *
1554207 AACCAAAGACCTTCGAGTTTGACTACACTCAGCTCCAAGGCACATCATTTGCAGA-ATAGCTCAA
1 AACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCA-ACATAGCTCAA
* *
1554271 GGCAATAAGGGTTATCTGCC
65 GGCAAGAAGGGTTATCTGCT
* * * *
1554291 AACCAAAGACCTTCGAGTTCGACTATGCTCAGCTTCAAGGCACATCATTTGCAGCATAACTCAAG
1 AACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAACATAGCTCAAG
* * *
1554356 GCGATAAGGGTTATCT-TT
66 GCAAGAAGGGTTATCTGCT
* * * * * *
1554374 CACCAAATACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATATCATTTGTAGCATAACTCAAG
1 AACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAACATAGCTCAAG
* *
1554439 GCTAGAAGGGCTATCTG-T
66 GCAAGAAGGGTTATCTGCT
*
1554457 CAA-CAAAGACCTTTGAGTT
1 -AACCAAAGACCTTCGAGTT
1554476 AGATTACATT
Statistics
Matches: 533, Mismatches: 64, Indels: 15
0.87 0.10 0.02
Matches are distributed among these distances:
83 158 0.30
84 375 0.70
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (84 bp):
AACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAACATAGCTCAAG
GCAAGAAGGGTTATCTGCT
Found at i:1554243 original size:251 final size:250
Alignment explanation
Indices: 1553788--1554540 Score: 955
Period size: 251 Copynumber: 3.0 Consensus size: 250
1553778 GAATCGTGCG
* * * *
1553788 AACCAAAGACTTTCGAGTTCGACTGCACTCAGCTCAAAGGCACATCATTTGCAACATAGT-TTAA
1 AACCAAAGACCTTCGAGTTCGACTACGCTCAGCTC-AAGGCACATCATTTGCAACATA-TCTCAA
** *
1553852 GTTGAGAAGGGTTATCTG-CTAACCAAATACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACA
64 GGCGAGAAGGGTTATTTGTC-AACC-AATACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACA
* * *
1553916 TCATTTGCAACATAACTCAAGGCTAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTA
127 TCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTAGACTA
* *
1553981 CGCTCAGCTCCAAGGCACATCATTTGCAACATAGCTCAAGGCAAGAAGGGTTATCTGCT
192 CACTCAGCTCCAAGGCACATCATTTGCAACATAGCTCAAGGCAAGAAGGGTTATCTGCC
* *
1554040 AACCGAAGACCTTCGAGTTCGACTACGCTCAGCTACAAGGCACATCATTTGTAACATATCTCAAG
1 AACCAAAGACCTTCGAGTTCGACTACGCTCAGCT-CAAGGCACATCATTTGCAACATATCTCAAG
* * * * * *
1554105 GCAAGAACGGCTATTTGTCAACC-ATGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATC
65 GCGAGAAGGGTTATTTGTCAACCAAT-ACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATC
* * *
1554169 ATTTGCAGCATAGCTCAAGGCAAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTTGACTACA
129 ATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTAGACTACA
*
1554234 CTCAGCTCCAAGGCACATCATTTGCAGA-ATAGCTCAAGGCAATAAGGGTTATCTGCC
194 CTCAGCTCCAAGGCACATCATTTGCA-ACATAGCTCAAGGCAAGAAGGGTTATCTGCC
* * *
1554291 AACCAAAGACCTTCGAGTTCGACTATGCTCAGCTTCAAGGCACATCATTTGCAGCATAACTCAAG
1 AACCAAAGACCTTCGAGTTCGACTACGCTCAGC-TCAAGGCACATCATTTGCAACATATCTCAAG
* *
1554356 GCGATAAGGGTTATCTT-TC-ACCAAATACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCATAT
65 GCGAGAAGGGTTAT-TTGTCAACC-AATACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACAT
* * * * *
1554419 CATTTGTAGCATAACTCAAGGCTAGAAGGGCTATCTGTCAA-CAAAGACCTTTGAGTTAGATTAC
128 CATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTAGACTAC
* * * * * * * *
1554483 ATTCAGCTCAAAAGCATACCGGATTTG-AATCATAACTCAAGGCGAGAAGTGTTATCTG
193 ACTCAGCTCCAAGGCACATC--ATTTGCAA-CATAGCTCAAGGCAAGAAGGGTTATCTG
1554541 TCAATAAACC
Statistics
Matches: 435, Mismatches: 53, Indels: 26
0.85 0.10 0.05
Matches are distributed among these distances:
250 41 0.09
251 288 0.66
252 104 0.24
253 2 0.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.24
Consensus pattern (250 bp):
AACCAAAGACCTTCGAGTTCGACTACGCTCAGCTCAAGGCACATCATTTGCAACATATCTCAAGG
CGAGAAGGGTTATTTGTCAACCAATACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCAT
TTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTAGACTACACT
CAGCTCCAAGGCACATCATTTGCAACATAGCTCAAGGCAAGAAGGGTTATCTGCC
Found at i:1558730 original size:31 final size:31
Alignment explanation
Indices: 1558694--1558752 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
1558684 AACTTAAAAG
* *
1558694 AGTTTTGCAATACTGAGATTTAAATAATTTT
1 AGTTTTACAATACTGAAATTTAAATAATTTT
1558725 AGTTTTACAATACTGAAATTTAAATAAT
1 AGTTTTACAATACTGAAATTTAAATAAT
1558753 CCATACAACT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.41, C:0.07, G:0.10, T:0.42
Consensus pattern (31 bp):
AGTTTTACAATACTGAAATTTAAATAATTTT
Found at i:1558788 original size:21 final size:22
Alignment explanation
Indices: 1558764--1558814 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
1558754 CATACAACTA
1558764 AAAT-AATAAAT-TATTTAAAAT
1 AAATCAATAAATAT-TTTAAAAT
**
1558785 AAATCAATCCATATTTTAAAAT
1 AAATCAATAAATATTTTAAAAT
1558807 AAATCAAT
1 AAATCAAT
1558815 TCATACTAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 4 0.15
22 21 0.81
23 1 0.04
ACGTcount: A:0.57, C:0.08, G:0.00, T:0.35
Consensus pattern (22 bp):
AAATCAATAAATATTTTAAAAT
Found at i:1558802 original size:22 final size:22
Alignment explanation
Indices: 1558777--1558819 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
1558767 TAATAAATTA
1558777 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
*
1558799 TTTAAAATAAATCAATTCATA
1 TTTAAAATAAATCAATCCATA
1558820 CTAATAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.51, C:0.12, G:0.00, T:0.37
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:1558828 original size:22 final size:22
Alignment explanation
Indices: 1558779--1558827 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
1558769 ATAAATTATT
**
1558779 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
*
1558801 TAAAATAAATCAATTCATACTAA
1 TAAAATAAATCAATCCATA-TAA
1558824 TAAA
1 TAAA
1558828 TTATTTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.33
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:1558831 original size:54 final size:54
Alignment explanation
Indices: 1558767--1559231 Score: 561
Period size: 54 Copynumber: 8.6 Consensus size: 54
1558757 ACAACTAAAA
*
1558767 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATTCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
*** * * *
1558821 TAATAAATTATTTAAAATAAATCAATCCATACAACTACAAT-AATAAATCAAT-C
1 TAATAAATTATTTAAAATAAATCAATCCATA-TTTTAAAATAAATCAATCCATAC
* * *
1558874 T-ATATAACTA--CAATAATAAATCAATCCATATTTTAAAATAAATAAATCCATAC
1 TAATA-AATTATTTAA-AATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
1558927 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
* ** *
1558981 TAATAAATTATTTAAAATAAATCAATCCATACAACTACAATAATAAATCAATCCATATTT
1 TAATAAATTATTTAAAATAAATCAATCCAT---ATTTTAA-AATAAATCAATCCATA--C
* * * * * * *
1559041 TAAAATAAATAAATTCATACAAATAAAT---TA-CTTAAAATAAATCAATCCATAC
1 T--AATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
1559093 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
*
1559147 TGATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
*
1559201 TAATAAATTTTTTAAAATAAATCAATCCATA
1 TAATAAATTATTTAAAATAAATCAATCCATA
1559232 CAACTACAAT
Statistics
Matches: 350, Mismatches: 41, Indels: 40
0.81 0.10 0.09
Matches are distributed among these distances:
50 19 0.05
51 7 0.02
52 30 0.09
53 14 0.04
54 229 0.65
55 9 0.03
56 1 0.00
57 4 0.01
58 16 0.05
59 1 0.00
60 1 0.00
62 19 0.05
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.34
Consensus pattern (54 bp):
TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
Found at i:1558904 original size:26 final size:26
Alignment explanation
Indices: 1558836--1559038 Score: 125
Period size: 26 Copynumber: 7.7 Consensus size: 26
1558826 AATTATTTAA
*
1558836 AATAAATCAATCCATACAACTACAAT
1 AATAAATCAATCCATATAACTACAAT
*
1558862 AATAAATCAATCTATATAACTACAAT
1 AATAAATCAATCCATATAACTACAAT
** *
1558888 AATAAATCAATCCATAT-TTTAAAAT
1 AATAAATCAATCCATATAACTACAAT
* * * *
1558913 AAATAAATCCATAC-TAATAAATTATTTAA-
1 -AATAAATCAATCCAT-AT-AACTA--CAAT
**
1558942 AATAAATCAATCCATAT---TTTAA-
1 AATAAATCAATCCATATAACTACAAT
*
1558964 AATAAATCAATCCATACTAA-TAAATTATTT
1 AATAAATCAATCCATA-TAACTACA--A--T
*
1558994 AAAATAAATCAATCCATACAACTACAAT
1 --AATAAATCAATCCATATAACTACAAT
1559022 AATAAATCAATCCATAT
1 AATAAATCAATCCATAT
1559039 TTTAAAATAA
Statistics
Matches: 141, Mismatches: 18, Indels: 36
0.72 0.09 0.18
Matches are distributed among these distances:
22 19 0.13
23 1 0.01
24 1 0.01
25 8 0.06
26 69 0.49
27 1 0.01
28 17 0.12
29 1 0.01
30 3 0.02
31 2 0.01
32 19 0.13
ACGTcount: A:0.53, C:0.16, G:0.00, T:0.31
Consensus pattern (26 bp):
AATAAATCAATCCATATAACTACAAT
Found at i:1558941 original size:32 final size:32
Alignment explanation
Indices: 1558905--1559012 Score: 137
Period size: 32 Copynumber: 3.7 Consensus size: 32
1558895 CAATCCATAT
*
1558905 TTTAAAATAAATAAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
1558937 TTTAAAATAAATCAAT-C---C--AT--A-T-
1 TTTAAAATAAATCAATCCATACTAATAAATTA
1558959 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
1558991 TTTAAAATAAATCAATCCATAC
1 TTTAAAATAAATCAATCCATAC
1559013 AACTACAATA
Statistics
Matches: 65, Mismatches: 1, Indels: 20
0.76 0.01 0.23
Matches are distributed among these distances:
22 16 0.25
23 2 0.03
24 1 0.02
26 3 0.05
28 3 0.05
30 1 0.02
31 2 0.03
32 37 0.57
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.34
Consensus pattern (32 bp):
TTTAAAATAAATCAATCCATACTAATAAATTA
Found at i:1558963 original size:22 final size:22
Alignment explanation
Indices: 1558937--1558979 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
1558927 TAATAAATTA
1558937 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
1558959 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
1558980 CTAATAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:1558988 original size:22 final size:22
Alignment explanation
Indices: 1558939--1558987 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
1558929 ATAAATTATT
**
1558939 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
1558961 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
1558984 TAAA
1 TAAA
1558988 TTATTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:1559044 original size:134 final size:135
Alignment explanation
Indices: 1558799--1559410 Score: 592
Period size: 134 Copynumber: 4.5 Consensus size: 135
1558789 CAATCCATAT
* * * *
1558799 TTTAAAATAAATCAATTCATACTAATAAATTATTTAAAATAAATCAATCCATACAACTA--CAAT
1 TTTAAAATAAATCAATCCATACTATTAAA--A--T-AAATAAATCAATCAATA-AA-TATTTAA-
* *
1558862 AATAAATCAATCTATA-TAACTACA-A-T-AATAAATCAATCCATATTTTAAAATAAATAAATCC
58 AATAAATCAATCCATACTAA-TAAATATTAAATAAATCAATCCATATTTTAAAATAAATAAATCC
1558923 ATACTAATAAATTA
122 ATACTAATAAATTA
* * *
1558937 TTTAAAATAAATCAATCCATA-TTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAA
1 TTTAAAATAAATCAATCCATACTATTAAAATAAATAAATCAAT-C-AATAAA-TATTTAAAATAA
* * *
1559001 ATCAATCCATAC-AACTACA-A-T-AATAAATCAATCCATATTTTAAAATAAATAAATTCATACA
63 ATCAATCCATACTAA-TAAATATTAAATAAATCAATCCATATTTTAAAATAAATAAATCCATACT
1559062 AATAAATTA
127 AATAAATTA
* * * ** * **
1559071 CTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAA
1 TTTAAAATAAATCAATCCATACTATTAAAATAAAT-AAATCAATCAATAAATA-TTTAAAATAAA
* *
1559136 TCAATCCATACTGATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
64 TCAATCCATACTAATAAA-TA-TT-AAATAAATCAATCCATATTTTAAAATAAATAAATCCATAC
*
1559201 TAATAAATTT
126 TAATAAATTA
* * * * *
1559211 TTTAAAATAAATCAATCCATACAACTACAAT-AATAAATCAATCCAT--AT-TTTAAAATAAATT
1 TTTAAAATAAATCAATCCATACTATTAAAATAAATAAATCAATCAATAAATATTTAAAATAAATC
* *
1559272 AATCCATACTAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATGCATACTA
66 AATCCATACTAATAAA-TA-TT-AAATAAATCAATCCATATTTTAAAATAAATAAATCCATACTA
1559337 ATAAATTA
128 ATAAATTA
* *
1559345 TTTAAAATAAATCAATCCATA-TTTTAAAATAAATCAATTC-ATACTAATAAATTATTTAAAATA
1 TTTAAAATAAATCAATCCATACTATTAAAATAAAT-AAATCAAT-C-AATAAA-TATTTAAAATA
1559408 AAT
62 AAT
1559411 TATTTTAAAA
Statistics
Matches: 404, Mismatches: 47, Indels: 44
0.82 0.09 0.09
Matches are distributed among these distances:
132 10 0.02
133 13 0.03
134 231 0.57
135 18 0.04
136 10 0.02
137 5 0.01
138 32 0.08
139 2 0.00
140 83 0.21
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.34
Consensus pattern (135 bp):
TTTAAAATAAATCAATCCATACTATTAAAATAAATAAATCAATCAATAAATATTTAAAATAAATC
AATCCATACTAATAAATATTAAATAAATCAATCCATATTTTAAAATAAATAAATCCATACTAATA
AATTA
Found at i:1559076 original size:32 final size:32
Alignment explanation
Indices: 1559040--1559234 Score: 160
Period size: 32 Copynumber: 6.7 Consensus size: 32
1559030 AATCCATATT
* *
1559040 TTAAAATAAATAAATTCATACAAATAAATTAC
1 TTAAAATAAATCAATCCATACAAATAAATTAC
* *
1559072 TTAAAATAAATCAATCCATACTAATAAATTAT
1 TTAAAATAAATCAATCCATACAAATAAATTAC
1559104 TTAAAATAAATCAAT-C---C--AT--ATT--
1 TTAAAATAAATCAATCCATACAAATAAATTAC
** *
1559126 TTAAAATAAATCAATCCATACTGATAAATTAT
1 TTAAAATAAATCAATCCATACAAATAAATTAC
1559158 TTAAAATAAATCAAT-C---C--AT--ATT--
1 TTAAAATAAATCAATCCATACAAATAAATTAC
* **
1559180 TTAAAATAAATCAATCCATACTAATAAATTTT
1 TTAAAATAAATCAATCCATACAAATAAATTAC
1559212 TTAAAATAAATCAATCCATACAA
1 TTAAAATAAATCAATCCATACAA
1559235 CTACAATAAT
Statistics
Matches: 138, Mismatches: 5, Indels: 40
0.75 0.03 0.22
Matches are distributed among these distances:
22 30 0.22
23 2 0.01
24 6 0.04
26 6 0.04
28 6 0.04
30 6 0.04
31 2 0.01
32 80 0.58
ACGTcount: A:0.53, C:0.13, G:0.01, T:0.34
Consensus pattern (32 bp):
TTAAAATAAATCAATCCATACAAATAAATTAC
Found at i:1559129 original size:22 final size:22
Alignment explanation
Indices: 1559103--1559145 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
1559093 TAATAAATTA
1559103 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
1559125 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
1559146 CTGATAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:1559154 original size:22 final size:22
Alignment explanation
Indices: 1559105--1559153 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
1559095 ATAAATTATT
**
1559105 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATGA
1559127 TAAAATAAATCAATCCATACTGA
1 TAAAATAAATCAATCCATA-TGA
1559150 TAAA
1 TAAA
1559154 TTATTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.53, C:0.14, G:0.02, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATGA
Found at i:1559155 original size:220 final size:220
Alignment explanation
Indices: 1558888--1559311 Score: 785
Period size: 220 Copynumber: 1.9 Consensus size: 220
1558878 TAACTACAAT
1558888 AATAAATCAATCCATATTTTAAAATAAATAAATCCATACTAATAAATTATTTAAAATAAATCAAT
1 AATAAATCAATCCATATTTTAAAATAAATAAATCCATACTAATAAATTATTTAAAATAAATCAAT
1558953 CCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACAACTA
66 CCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACAACTA
*
1559018 CAATAATAAATCAATCCATATTTTAAAATAAATAAATTCATACAAATAAATTACTTAAAATAAAT
131 CAATAATAAATCAATCCATATTTTAAAATAAATAAATCCATACAAATAAATTACTTAAAATAAAT
1559083 CAATCCATACTAATAAATTATTTAA
196 CAATCCATACTAATAAATTATTTAA
* *
1559108 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTGATAAATTATTTAAAATAAATCAAT
1 AATAAATCAATCCATATTTTAAAATAAATAAATCCATACTAATAAATTATTTAAAATAAATCAAT
*
1559173 CCATATTTTAAAATAAATCAATCCATACTAATAAATTTTTTAAAATAAATCAATCCATACAACTA
66 CCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACAACTA
* * *
1559238 CAATAATAAATCAATCCATATTTTAAAATAAATTAATCCATACTAATAAATTATTTAAAATAAAT
131 CAATAATAAATCAATCCATATTTTAAAATAAATAAATCCATACAAATAAATTACTTAAAATAAAT
1559303 CAATCCATA
196 CAATCCATA
1559312 TTTTAAAATA
Statistics
Matches: 197, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
220 197 1.00
ACGTcount: A:0.53, C:0.14, G:0.00, T:0.33
Consensus pattern (220 bp):
AATAAATCAATCCATATTTTAAAATAAATAAATCCATACTAATAAATTATTTAAAATAAATCAAT
CCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACAACTA
CAATAATAAATCAATCCATATTTTAAAATAAATAAATCCATACAAATAAATTACTTAAAATAAAT
CAATCCATACTAATAAATTATTTAA
Found at i:1559183 original size:22 final size:22
Alignment explanation
Indices: 1559157--1559199 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
1559147 TGATAAATTA
1559157 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
1559179 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
1559200 CTAATAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:1559208 original size:22 final size:22
Alignment explanation
Indices: 1559159--1559207 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
1559149 ATAAATTATT
**
1559159 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
1559181 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
1559204 TAAA
1 TAAA
1559208 TTTTTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:1559264 original size:80 final size:80
Alignment explanation
Indices: 1559162--1559311 Score: 282
Period size: 80 Copynumber: 1.9 Consensus size: 80
1559152 AATTATTTAA
*
1559162 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTTTTTAAAATAAATCAAT
1 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAAT
1559227 CCATACAACTACAAT
66 CCATACAACTACAAT
*
1559242 AATAAATCAATCCATATTTTAAAATAAATTAATCCATACTAATAAATTATTTAAAATAAATCAAT
1 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAAT
1559307 CCATA
66 CCATA
1559312 TTTTAAAATA
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
80 68 1.00
ACGTcount: A:0.52, C:0.15, G:0.00, T:0.33
Consensus pattern (80 bp):
AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAAT
CCATACAACTACAAT
Found at i:1559267 original size:22 final size:22
Alignment explanation
Indices: 1559210--1559279 Score: 68
Period size: 22 Copynumber: 3.0 Consensus size: 22
1559200 CTAATAAATT
1559210 TTTTAAAATAAATCAATCCATACAA
1 TTTTAAAATAAATCAATCCAT---A
* **
1559235 CTACAATAATAAATCAATCCATA
1 TTTTAA-AATAAATCAATCCATA
*
1559258 TTTTAAAATAAATTAATCCATA
1 TTTTAAAATAAATCAATCCATA
1559280 CTAATAAATT
Statistics
Matches: 37, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
22 15 0.41
23 4 0.11
25 3 0.08
26 15 0.41
ACGTcount: A:0.51, C:0.16, G:0.00, T:0.33
Consensus pattern (22 bp):
TTTTAAAATAAATCAATCCATA
Found at i:1559298 original size:32 final size:31
Alignment explanation
Indices: 1559259--1559410 Score: 142
Period size: 32 Copynumber: 5.4 Consensus size: 31
1559249 CAATCCATAT
*
1559259 TTTAAAATAAATTAATCCATACTAATAAATTA
1 TTTAAAATAAATCAAT-CATACTAATAAATTA
1559291 TTTAAAATAAATCAATC---C--AT--A-T-
1 TTTAAAATAAATCAATCATACTAATAAATTA
1559313 TTTAAAATAAATCAATGCATACTAATAAATTA
1 TTTAAAATAAATCAAT-CATACTAATAAATTA
1559345 TTTAAAATAAATCAATC---C--AT--A-T-
1 TTTAAAATAAATCAATCATACTAATAAATTA
1559367 TTTAAAATAAATCAATTCATACTAATAAATTA
1 TTTAAAATAAATCAA-TCATACTAATAAATTA
1559399 TTTAAAATAAAT
1 TTTAAAATAAAT
1559411 TATTTTAAAA
Statistics
Matches: 99, Mismatches: 1, Indels: 40
0.71 0.01 0.29
Matches are distributed among these distances:
22 31 0.31
23 5 0.05
24 2 0.02
26 6 0.06
28 6 0.06
30 2 0.02
31 4 0.04
32 43 0.43
ACGTcount: A:0.53, C:0.10, G:0.01, T:0.37
Consensus pattern (31 bp):
TTTAAAATAAATCAATCATACTAATAAATTA
Found at i:1559311 original size:54 final size:54
Alignment explanation
Indices: 1559242--1559410 Score: 311
Period size: 54 Copynumber: 3.1 Consensus size: 54
1559232 CAACTACAAT
*
1559242 AATAAATCAATCCATATTTTAAAATAAATTAATCCATACTAATAAATTATTTAA
1 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAA
*
1559296 AATAAATCAATCCATATTTTAAAATAAATCAATGCATACTAATAAATTATTTAA
1 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAA
*
1559350 AATAAATCAATCCATATTTTAAAATAAATCAATTCATACTAATAAATTATTTAA
1 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAA
1559404 AATAAAT
1 AATAAAT
1559411 TATTTTAAAA
Statistics
Matches: 112, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
54 112 1.00
ACGTcount: A:0.53, C:0.11, G:0.01, T:0.36
Consensus pattern (54 bp):
AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAA
Found at i:1559316 original size:22 final size:22
Alignment explanation
Indices: 1559291--1559333 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
1559281 TAATAAATTA
1559291 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
*
1559313 TTTAAAATAAATCAATGCATA
1 TTTAAAATAAATCAATCCATA
1559334 CTAATAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.51, C:0.12, G:0.02, T:0.35
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:1559342 original size:22 final size:22
Alignment explanation
Indices: 1559293--1559341 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
1559283 ATAAATTATT
**
1559293 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
*
1559315 TAAAATAAATCAATGCATACTAA
1 TAAAATAAATCAATCCATA-TAA
1559338 TAAA
1 TAAA
1559342 TTATTTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.55, C:0.12, G:0.02, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:1559351 original size:220 final size:220
Alignment explanation
Indices: 1558888--1559365 Score: 737
Period size: 220 Copynumber: 2.2 Consensus size: 220
1558878 TAACTACAAT
** *
1558888 AATAAATCAATCCATATTTTAAAATAAATAAATCCATACTAATAAATTATTTAAAATAAATCAAT
1 AATAAATCAATAAATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAAT
1558953 CCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACAACTA
66 CCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACAACTA
*
1559018 CAATAATAAATCAATCCATATTTTAAAATAAATAAATTCATACAAATAAATTACTTAAAATAAAT
131 CAATAATAAATCAATCCATATTTTAAAATAAATAAATCCATACAAATAAATTACTTAAAATAAAT
* **
1559083 CAATCCATACTAATAAATTATTTAA
196 CAATCCATACTAATAAAATAAATAA
** *
1559108 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTGATAAATTATTTAAAATAAATCAAT
1 AATAAATCAATAAATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAAT
*
1559173 CCATATTTTAAAATAAATCAATCCATACTAATAAATTTTTTAAAATAAATCAATCCATACAACTA
66 CCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACAACTA
* * *
1559238 CAATAATAAATCAATCCATATTTTAAAATAAATTAATCCATACTAATAAATTATTTAAAATAAAT
131 CAATAATAAATCAATCCATATTTTAAAATAAATAAATCCATACAAATAAATTACTTAAAATAAAT
** *
1559303 CAATCCATA-TTTTAAAATAAAT-C
196 CAATCCATACTAATAAAATAAATAA
**
1559326 AATGCATACTAATAAAT-TATTTAAAATAAATCAATCCATA
1 AATAAAT-C-AATAAATAT-TTTAAAATAAATCAATCCATA
1559366 TTTTAAAATA
Statistics
Matches: 238, Mismatches: 17, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
218 5 0.02
219 10 0.04
220 223 0.94
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.34
Consensus pattern (220 bp):
AATAAATCAATAAATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAAT
CCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACAACTA
CAATAATAAATCAATCCATATTTTAAAATAAATAAATCCATACAAATAAATTACTTAAAATAAAT
CAATCCATACTAATAAAATAAATAA
Found at i:1559371 original size:22 final size:22
Alignment explanation
Indices: 1559345--1559447 Score: 89
Period size: 22 Copynumber: 4.5 Consensus size: 22
1559335 TAATAAATTA
1559345 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
*
1559367 TTTAAAATAAATCAATTCATACT
1 TTTAAAATAAATCAATCCATA-T
** * ** * **
1559390 AATAAATTATTTAAAATAAATTAT
1 TTTAAAATAAAT-CAATCCA-TAT
1559414 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
*
1559436 TTTATAATAAAT
1 TTTAAAATAAAT
1559448 TATTTTATAA
Statistics
Matches: 60, Mismatches: 18, Indels: 6
0.71 0.21 0.07
Matches are distributed among these distances:
22 34 0.57
23 12 0.20
24 12 0.20
25 2 0.03
ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:1559419 original size:15 final size:15
Alignment explanation
Indices: 1559389--1559529 Score: 185
Period size: 15 Copynumber: 9.0 Consensus size: 15
1559379 CAATTCATAC
1559389 TAATAAATTA-TTTA
1 TAATAAATTATTTTA
*
1559403 AAATAAATTATTTTA
1 TAATAAATTATTTTA
*
1559418 AAATAAATCAATCCATATTTTA
1 TAATAAAT---T----ATTTTA
1559440 TAATAAATTATTTTA
1 TAATAAATTATTTTA
1559455 TAATAAATTATTTTA
1 TAATAAATTATTTTA
1559470 TAATAAATTATTTTA
1 TAATAAATTATTTTA
1559485 TAATAAATTATTTTA
1 TAATAAATTATTTTA
*
1559500 AAATAAATTATTTTA
1 TAATAAATTATTTTA
1559515 TAATAAATTATTTTA
1 TAATAAATTATTTTA
1559530 AATTAAATAA
Statistics
Matches: 115, Mismatches: 4, Indels: 15
0.86 0.03 0.11
Matches are distributed among these distances:
14 9 0.08
15 91 0.79
18 1 0.01
19 1 0.01
22 13 0.11
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (15 bp):
TAATAAATTATTTTA
Found at i:1559425 original size:69 final size:67
Alignment explanation
Indices: 1559336--1559537 Score: 242
Period size: 60 Copynumber: 3.1 Consensus size: 67
1559326 AATGCATACT
1559336 AATAAATTA-TTTAAAATAAATCAATCCATATTTTAAAATAAATCAATTCATACTAATAAATTA-
1 AATAAATTATTTTAAAATAAATCAATCCATATTTTAAAATAAAT-AATT-ATA-TAATAAATTAT
1559399 TTTAA
63 TTTAA
* * *
1559404 AATAAATTATTTTAAAATAAATCAATCCATATTTTATAATAAATTATTTTATAATAAATTATTTT
1 AATAAATTATTTTAAAATAAATCAATCCATATTTTAAAATAAATAATTATATAATAAATTATTTT
*
1559469 AT
66 AA
* * *
1559471 AATAAATTATTTT---AT-AATAAAT---TATTTTAAAATAAATTATTTTATAATAAATTATTTT
1 AATAAATTATTTTAAAATAAATCAATCCATATTTTAAAATAAATAATTATATAATAAATTATTTT
1559529 AA
66 AA
*
1559531 ATTAAAT
1 AATAAAT
1559538 AACCTTATTA
Statistics
Matches: 124, Mismatches: 8, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
60 42 0.34
63 6 0.05
64 2 0.02
66 10 0.08
67 19 0.15
68 12 0.10
69 33 0.27
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.45
Consensus pattern (67 bp):
AATAAATTATTTTAAAATAAATCAATCCATATTTTAAAATAAATAATTATATAATAAATTATTTT
AA
Found at i:1562308 original size:104 final size:104
Alignment explanation
Indices: 1562123--1562332 Score: 366
Period size: 104 Copynumber: 2.0 Consensus size: 104
1562113 GTGGTAAACT
** *
1562123 ATGTCCAACTAAAATAAACGGGTTCAAGTTGGAGTTTGAATATTGATGTTTACAAATTAAACAAA
1 ATGTCCAACTAAAATAAACAAGTTCAAGTTGGAGTTTAAATATTGATGTTTACAAATTAAACAAA
1562188 TTGGATTGGAAGGATCGCTTTCATATTGATAGTTTAAGG
66 TTGGATTGGAAGGATCGCTTTCATATTGATAGTTTAAGG
* *
1562227 ATGTTCAACTAAAATAAACAAGTTCAAGTTGGAGTTTAAATATTGATGTTTACGAATTAAACAAA
1 ATGTCCAACTAAAATAAACAAGTTCAAGTTGGAGTTTAAATATTGATGTTTACAAATTAAACAAA
*
1562292 TTGGATTGGAATGATCGCTTTCATATTGATAGTTTAAGG
66 TTGGATTGGAAGGATCGCTTTCATATTGATAGTTTAAGG
1562331 AT
1 AT
1562333 TGATATAAAA
Statistics
Matches: 100, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
104 100 1.00
ACGTcount: A:0.37, C:0.09, G:0.20, T:0.35
Consensus pattern (104 bp):
ATGTCCAACTAAAATAAACAAGTTCAAGTTGGAGTTTAAATATTGATGTTTACAAATTAAACAAA
TTGGATTGGAAGGATCGCTTTCATATTGATAGTTTAAGG
Found at i:1568117 original size:20 final size:22
Alignment explanation
Indices: 1568078--1568117 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
1568068 TATAATTCTT
*
1568078 AATCACATAATTTCTATCCCAA
1 AATCACATAATCTCTATCCCAA
1568100 AATCACAT-ATCT-TATCCC
1 AATCACATAATCTCTATCCC
1568118 TTATTCCATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 3 0.18
22 8 0.47
ACGTcount: A:0.38, C:0.30, G:0.00, T:0.33
Consensus pattern (22 bp):
AATCACATAATCTCTATCCCAA
Found at i:1568844 original size:18 final size:18
Alignment explanation
Indices: 1568821--1568855 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
1568811 ACTGAATATT
*
1568821 TGTCCCGAAGGACCACTA
1 TGTCCCGAAGAACCACTA
1568839 TGTCCCGAAGAACCACT
1 TGTCCCGAAGAACCACT
1568856 GAAAATCCCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.29, C:0.34, G:0.20, T:0.17
Consensus pattern (18 bp):
TGTCCCGAAGAACCACTA
Found at i:1569664 original size:24 final size:20
Alignment explanation
Indices: 1569607--1569683 Score: 68
Period size: 20 Copynumber: 3.7 Consensus size: 20
1569597 TTCCCCTTGA
*
1569607 AGTGCATCGATGCATTCTAC
1 AGTGCATCGATGCATCCTAC
*
1569627 AGTGTATCGATGCATCCCTTAAC
1 AGTGCATCGATGCAT-CC-T-AC
*
1569650 ATGTGCATCGATGCACTCCT-T
1 A-GTGCATCGATGCA-TCCTAC
1569671 A-TGCATCGATGCA
1 AGTGCATCGATGCA
1569684 CTAATTACAT
Statistics
Matches: 48, Mismatches: 4, Indels: 11
0.76 0.06 0.17
Matches are distributed among these distances:
19 12 0.25
20 14 0.29
21 2 0.04
22 1 0.02
23 4 0.08
24 14 0.29
25 1 0.02
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (20 bp):
AGTGCATCGATGCATCCTAC
Found at i:1579745 original size:20 final size:20
Alignment explanation
Indices: 1579664--1579735 Score: 103
Period size: 20 Copynumber: 3.5 Consensus size: 20
1579654 TAGGCTTGAT
1579664 AGTATCGATACTACTGTTCATG-
1 AGTATCGATACTAC---TCATGC
1579686 -GTATCGATACTACTCATGC
1 AGTATCGATACTACTCATGC
1579705 AGTATCGATACTACTCATGC
1 AGTATCGATACTACTCATGC
1579725 AGTATCGATAC
1 AGTATCGATAC
1579736 CTATTTTGCA
Statistics
Matches: 48, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.10
20 30 0.62
21 13 0.27
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (20 bp):
AGTATCGATACTACTCATGC
Found at i:1579803 original size:21 final size:21
Alignment explanation
Indices: 1579779--1579818 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
1579769 ATTGTTTATA
1579779 GTATCGATACTACTGTTCATG
1 GTATCGATACTACTGTTCATG
1579800 GTATCGATACTACTGTTCA
1 GTATCGATACTACTGTTCA
1579819 CACAGTATCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (21 bp):
GTATCGATACTACTGTTCATG
Found at i:1579830 original size:23 final size:21
Alignment explanation
Indices: 1579778--1579834 Score: 78
Period size: 21 Copynumber: 2.6 Consensus size: 21
1579768 CATTGTTTAT
*
1579778 AGTATCGATACTACTGTTCAT
1 AGTATCGATACTACTGTTCAC
*
1579799 GGTATCGATACTACTGTTCACAC
1 AGTATCGATACTACTGTT--CAC
1579822 AGTATCGATACTA
1 AGTATCGATACTA
1579835 TTCATACATT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
21 17 0.55
23 14 0.45
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (21 bp):
AGTATCGATACTACTGTTCAC
Found at i:1579854 original size:19 final size:19
Alignment explanation
Indices: 1579810--1579897 Score: 122
Period size: 19 Copynumber: 4.6 Consensus size: 19
1579800 GTATCGATAC
* * *
1579810 TACTGTTCACACAGTATCGA
1 TACTATTCATACAGTA-CGG
*
1579830 TACTATTCATACATTACGG
1 TACTATTCATACAGTACGG
1579849 TACTATTCATACAGTACGG
1 TACTATTCATACAGTACGG
*
1579868 TACTATTCATACAGTACAG
1 TACTATTCATACAGTACGG
1579887 TACTATTCATA
1 TACTATTCATA
1579898 AAAAAATTTG
Statistics
Matches: 62, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
19 49 0.79
20 13 0.21
ACGTcount: A:0.33, C:0.22, G:0.11, T:0.34
Consensus pattern (19 bp):
TACTATTCATACAGTACGG
Found at i:1582507 original size:3 final size:3
Alignment explanation
Indices: 1582499--1582525 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
1582489 AAAGAAAAGT
1582499 GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA
1582526 ACGAATGCCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:1589310 original size:22 final size:22
Alignment explanation
Indices: 1589282--1589325 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
1589272 GAGAGGCAGT
1589282 ATAAATTGTAGAAAAGATAACC
1 ATAAATTGTAGAAAAGATAACC
1589304 ATAAATTGTAGAAAAGATAACC
1 ATAAATTGTAGAAAAGATAACC
1589326 TGGGAGTGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.55, C:0.09, G:0.14, T:0.23
Consensus pattern (22 bp):
ATAAATTGTAGAAAAGATAACC
Found at i:1598655 original size:11 final size:11
Alignment explanation
Indices: 1598639--1598680 Score: 77
Period size: 11 Copynumber: 3.9 Consensus size: 11
1598629 ATATAAAATC
1598639 CGGTTGAACCG
1 CGGTTGAACCG
1598650 CGGTTGAACCG
1 CGGTTGAACCG
1598661 CGGTTGAACC-
1 CGGTTGAACCG
1598671 CGGTTGAACC
1 CGGTTGAACC
1598681 AGTACCTTCA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
10 10 0.32
11 21 0.68
ACGTcount: A:0.19, C:0.29, G:0.33, T:0.19
Consensus pattern (11 bp):
CGGTTGAACCG
Found at i:1598667 original size:22 final size:21
Alignment explanation
Indices: 1598639--1598680 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
1598629 ATATAAAATC
1598639 CGGTTGAACCGCGGTTGAACCG
1 CGGTTGAACC-CGGTTGAACCG
1598661 CGGTTGAACCCGGTTGAACC
1 CGGTTGAACCCGGTTGAACC
1598681 AGTACCTTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 10 0.50
22 10 0.50
ACGTcount: A:0.19, C:0.29, G:0.33, T:0.19
Consensus pattern (21 bp):
CGGTTGAACCCGGTTGAACCG
Found at i:1603735 original size:20 final size:20
Alignment explanation
Indices: 1603710--1603763 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
1603700 TTCACCCCGG
*
1603710 TTTTCAGTCGGTTCTATCGA
1 TTTTCAGCCGGTTCTATCGA
1603730 TTTTCAGCCGGTTCTATCGA
1 TTTTCAGCCGGTTCTATCGA
*
1603750 TTTTCAGCCCGTTC
1 TTTTCAGCCGGTTC
1603764 ATTGCCAGCC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.13, C:0.26, G:0.19, T:0.43
Consensus pattern (20 bp):
TTTTCAGCCGGTTCTATCGA
Found at i:1604307 original size:60 final size:61
Alignment explanation
Indices: 1604209--1604507 Score: 209
Period size: 60 Copynumber: 5.0 Consensus size: 61
1604199 ACGAATTTGG
* * * * * *
1604209 GGATGAAGTTGGAACATTCAAAAGTTTAGGGAGC-AATTTAGAA-AGAGGGTCATAGTTT-AT
1 GGATGAAATTAGAATATTTAAAAGTTTAAGG-GCTAATTTAGAACA-AGGATCATAGTTTGAT
* * * *
1604269 GGATGAAATTAGAATGTTTAAAAGTTTAAGGGCTAATTTAGAATAA-GATTTAGAGTTTTAGGAT
1 GGATGAAATTAGAATATTTAAAAGTTTAAGGGCTAATTTAGAACAAGGA-TCATAG-TTT--GAT
* *
1604333 GAGGATGAAATTAGAATATTTAAAAG--T-----CTAATTTAGAACAA-GATTTAGAGTTT-AT
1 --GGATGAAATTAGAATATTTAAAAGTTTAAGGGCTAATTTAGAACAAGGA-TCATAGTTTGAT
*
1604388 GGATGAAATTAGAATGTTTAAAAGTTTAAGGGCTAATTTAGAACAA-GAT-ATAGAGTTTGA-
1 GGATGAAATTAGAATATTTAAAAGTTTAAGGGCTAATTTAGAACAAGGATCAT--AGTTTGAT
* * ** *
1604448 GGATGAAAATAGAATATTTAAAAGTTT-AGGGACTAATTTAAAATGAGGATCATAATTTGA
1 GGATGAAATTAGAATATTTAAAAGTTTAAGGG-CTAATTTAGAACAAGGATCATAGTTTGA
1604508 AGACAAATGA
Statistics
Matches: 198, Mismatches: 19, Indels: 44
0.76 0.07 0.17
Matches are distributed among these distances:
53 23 0.12
55 3 0.02
58 4 0.02
59 30 0.15
60 102 0.52
61 8 0.04
62 2 0.01
64 3 0.02
66 23 0.12
ACGTcount: A:0.41, C:0.04, G:0.23, T:0.32
Consensus pattern (61 bp):
GGATGAAATTAGAATATTTAAAAGTTTAAGGGCTAATTTAGAACAAGGATCATAGTTTGAT
Found at i:1604376 original size:59 final size:61
Alignment explanation
Indices: 1604269--1604453 Score: 179
Period size: 53 Copynumber: 3.0 Consensus size: 61
1604259 CATAGTTTAT
* *
1604269 GGATGAAATTAGAATGTTTAAAAGTTTAAGGGCTAATTTAGAATAAGATTTAGAGTTTTAGGATG
1 GGATGAAATTAGAATATTTAAAAG-TT----GCTAATTTAGAACAAGATTTAGAGTTTTAGGATG
1604334 A
61 A
1604335 GGATGAAATTAGAATATTTAAAAG-T-CTAATTTAGAACAAGATTTAGAG-TTT---AT--
1 GGATGAAATTAGAATATTTAAAAGTTGCTAATTTAGAACAAGATTTAGAGTTTTAGGATGA
* * *
1604388 GGATGAAATTAGAATGTTTAAAAGTTTAAGGGCTAATTTAGAACAAGATATAGAGTTTGAGGATG
1 GGATGAAATTAGAATATTTAAAAG-TT----GCTAATTTAGAACAAGATTTAGAGTTTTAGGATG
1604453 A
61 A
1604454 AAATAGAATA
Statistics
Matches: 101, Mismatches: 5, Indels: 26
0.77 0.04 0.20
Matches are distributed among these distances:
53 23 0.23
55 3 0.03
58 3 0.03
59 22 0.22
60 22 0.22
61 2 0.02
64 3 0.03
66 23 0.23
ACGTcount: A:0.41, C:0.03, G:0.23, T:0.34
Consensus pattern (61 bp):
GGATGAAATTAGAATATTTAAAAGTTGCTAATTTAGAACAAGATTTAGAGTTTTAGGATGA
Found at i:1604624 original size:3 final size:3
Alignment explanation
Indices: 1604616--1604647 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
1604606 GGATACTATC
1604616 ATT ATT ATT ATT ATT A-T ATT ATT -TT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1604648 ATAATAATGT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
2 4 0.15
3 23 0.85
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:1605340 original size:20 final size:20
Alignment explanation
Indices: 1605317--1605371 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
1605307 GCACTAACTC
1605317 TATTATACT-GCCACCACTAA
1 TATT-TACTGGCCACCACTAA
*
1605337 TATTTGCTGGCCACCACTAA
1 TATTTACTGGCCACCACTAA
*
1605357 TATTTGCTGGCCACC
1 TATTTACTGGCCACC
1605372 CATGTTTTGT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
19 3 0.09
20 30 0.91
ACGTcount: A:0.25, C:0.31, G:0.13, T:0.31
Consensus pattern (20 bp):
TATTTACTGGCCACCACTAA
Found at i:1613106 original size:9 final size:9
Alignment explanation
Indices: 1613085--1613149 Score: 91
Period size: 9 Copynumber: 7.3 Consensus size: 9
1613075 TTAAAGATAA
1613085 AAAAAAATG
1 AAAAAAATG
1613094 --AAAAATG
1 AAAAAAATG
1613101 -AAAAAATG
1 AAAAAAATG
1613109 AAAAAAATG
1 AAAAAAATG
1613118 AAAAAAAATG
1 -AAAAAAATG
1613128 AAAAAAATG
1 AAAAAAATG
1613137 AAAAAAAATG
1 -AAAAAAATG
1613147 AAA
1 AAA
1613150 TAGAAAAATA
Statistics
Matches: 52, Mismatches: 0, Indels: 8
0.87 0.00 0.13
Matches are distributed among these distances:
7 7 0.13
8 7 0.13
9 20 0.38
10 18 0.35
ACGTcount: A:0.78, C:0.00, G:0.11, T:0.11
Consensus pattern (9 bp):
AAAAAAATG
Found at i:1613114 original size:10 final size:10
Alignment explanation
Indices: 1613101--1613177 Score: 88
Period size: 9 Copynumber: 7.6 Consensus size: 10
1613091 ATGAAAAATG
1613101 AAAAAATG-A
1 AAAAAATGAA
1613110 AAAAAATGAA
1 AAAAAATGAA
1613120 AAAAAATG-A
1 AAAAAATGAA
1613129 AAAAAATGAA
1 AAAAAATGAA
1613139 AAAAAATGAAA
1 AAAAAATG-AA
*
1613150 TAGAAAAAT-AG
1 -A-AAAAATGAA
1613161 AAAAAATAGAA
1 AAAAAAT-GAA
1613172 AAAAAA
1 AAAAAA
1613178 AAAGAAAAAA
Statistics
Matches: 59, Mismatches: 2, Indels: 12
0.81 0.03 0.16
Matches are distributed among these distances:
9 23 0.39
10 19 0.32
11 10 0.17
12 1 0.02
13 6 0.10
ACGTcount: A:0.79, C:0.00, G:0.10, T:0.10
Consensus pattern (10 bp):
AAAAAATGAA
Found at i:1613123 original size:19 final size:19
Alignment explanation
Indices: 1613084--1613149 Score: 104
Period size: 19 Copynumber: 3.7 Consensus size: 19
1613074 CTTAAAGATA
1613084 AAAAAAAATG--AAAAATG
1 AAAAAAAATGAAAAAAATG
1613101 --AAAAAATGAAAAAAATG
1 AAAAAAAATGAAAAAAATG
1613118 AAAAAAAATGAAAAAAATG
1 AAAAAAAATGAAAAAAATG
1613137 AAAAAAAATGAAA
1 AAAAAAAATGAAA
1613150 TAGAAAAATA
Statistics
Matches: 45, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
15 8 0.18
17 7 0.16
19 30 0.67
ACGTcount: A:0.79, C:0.00, G:0.11, T:0.11
Consensus pattern (19 bp):
AAAAAAAATGAAAAAAATG
Found at i:1613157 original size:43 final size:42
Alignment explanation
Indices: 1613087--1613210 Score: 90
Period size: 42 Copynumber: 3.1 Consensus size: 42
1613077 AAAGATAAAA
1613087 AAAAATG-AAAAATGAAAAAATGAAAAAAATGAAAAAAAAT-GAA
1 AAAAATGAAAAAATGAAAAAA-G--AAAAATGAAAAAAAATAGAA
* *
1613130 AAAAATGAAAAAAAATG-AAATAGAAAAAT-AGAAAAAATAGAA
1 AAAAATG--AAAAAATGAAAAAAGAAAAATGAAAAAAAATAGAA
* *
1613172 AAAAA--AAAAGA--AAAAAAGAAGAA-G-AAAAAAATA-AA
1 AAAAATGAAAAAATGAAAAAAGAAAAATGAAAAAAAATAGAA
1613207 AAAA
1 AAAA
1613211 TAAAAGGGGG
Statistics
Matches: 69, Mismatches: 6, Indels: 20
0.73 0.06 0.21
Matches are distributed among these distances:
35 6 0.09
36 8 0.12
37 9 0.13
38 5 0.07
41 8 0.12
42 14 0.20
43 7 0.10
44 1 0.01
45 4 0.06
46 7 0.10
ACGTcount: A:0.80, C:0.00, G:0.11, T:0.09
Consensus pattern (42 bp):
AAAAATGAAAAAATGAAAAAAGAAAAATGAAAAAAAATAGAA
Found at i:1613158 original size:8 final size:8
Alignment explanation
Indices: 1613147--1613212 Score: 50
Period size: 8 Copynumber: 8.6 Consensus size: 8
1613137 AAAAAAAATG
1613147 AAATAGAA
1 AAATAGAA
1613155 AAATAGAAA
1 AAATAG-AA
1613164 AAATAG-A
1 AAATAGAA
1613171 AAA-A-AA
1 AAATAGAA
1613177 AAA-AGAA
1 AAATAGAA
*
1613184 AAAAAGAA
1 AAATAGAA
* * *
1613192 GAAGAAAA
1 AAATAGAA
*
1613200 AAATAAAA
1 AAATAGAA
1613208 AAATA
1 AAATA
1613213 AAAGGGGGGT
Statistics
Matches: 49, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
6 6 0.12
7 9 0.18
8 26 0.53
9 8 0.16
ACGTcount: A:0.82, C:0.00, G:0.11, T:0.08
Consensus pattern (8 bp):
AAATAGAA
Found at i:1613213 original size:8 final size:8
Alignment explanation
Indices: 1613085--1613215 Score: 86
Period size: 9 Copynumber: 15.5 Consensus size: 8
1613075 TTAAAGATAA
1613085 AAAAAAAT
1 AAAAAAAT
*
1613093 -GAAAAAT
1 AAAAAAAT
*
1613100 GAAAAAAT
1 AAAAAAAT
1613108 GAAAAAAAT
1 -AAAAAAAT
1613117 GAAAAAAAAT
1 --AAAAAAAT
1613127 GAAAAAAAT
1 -AAAAAAAT
*
1613136 GAAAAAA-
1 AAAAAAAT
**
1613143 AATGAAAT
1 AAAAAAAT
*
1613151 AGAAAAAT
1 AAAAAAAT
1613159 AGAAAAAAT
1 A-AAAAAAT
*
1613168 AGAAAAAAA
1 A-AAAAAAT
*
1613177 AAAAGAAAA
1 AAAA-AAAT
*
1613186 AAAGAAGAAG
1 AAA-AA-AAT
1613196 AAAAAAAT
1 AAAAAAAT
1613204 AAAAAAAT
1 AAAAAAAT
1613212 AAAA
1 AAAA
1613216 GGGGGGTTCA
Statistics
Matches: 99, Mismatches: 16, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
7 10 0.10
8 35 0.35
9 40 0.40
10 14 0.14
ACGTcount: A:0.80, C:0.00, G:0.11, T:0.09
Consensus pattern (8 bp):
AAAAAAAT
Found at i:1614909 original size:108 final size:110
Alignment explanation
Indices: 1614705--1614988 Score: 482
Period size: 108 Copynumber: 2.6 Consensus size: 110
1614695 TGAAGCAAAA
*
1614705 GAAGATTGTTTGAGTCTTATACTCTCTGAAGAAATAGGGGGGCAGACGCGATCGTTGAAGATTAT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATA-GGGGGCAGACGCGATCGTTGAAGATTAT
1614770 TCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGAT
65 TCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGAT
* *
1614816 GAAGATTG-TGGA-TCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTTGAAGATTGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTTGAAGATTATT
* * *
1614879 CGAGTCTTATACTCTCTGAATAAATAGGGGGCATACGCGATTGTT
66 CGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGAT
*
1614924 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTTGGAGATTATT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTTGAAGATTATT
1614989 GTTCGAGTTC
Statistics
Matches: 163, Mismatches: 8, Indels: 5
0.93 0.05 0.03
Matches are distributed among these distances:
108 78 0.48
109 25 0.15
110 52 0.32
111 8 0.05
ACGTcount: A:0.28, C:0.14, G:0.29, T:0.29
Consensus pattern (110 bp):
GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTTGAAGATTATT
CGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGAT
Found at i:1614917 original size:55 final size:55
Alignment explanation
Indices: 1614705--1614985 Score: 458
Period size: 55 Copynumber: 5.1 Consensus size: 55
1614695 TGAAGCAAAA
*
1614705 GAAGATTGTTTGAGTCTTATACTCTCTGAAGAAATAGGGGGGCAGACGCGATCGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATA-GGGGGCAGACGCGATCGTT
* * *
1614761 GAAGATTATTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGAT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
*
1614816 GAAGATTG-TGGA-TCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
* * *
1614869 GAAGATTGTTCGAGTCTTATACTCTCTGAATAAATAGGGGGCATACGCGATTGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
1614924 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
*
1614979 GGAGATT
1 GAAGATT
1614986 ATTGTTCGAG
Statistics
Matches: 207, Mismatches: 16, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
53 47 0.23
54 6 0.03
55 120 0.58
56 34 0.16
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (55 bp):
GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
Found at i:1615041 original size:52 final size:52
Alignment explanation
Indices: 1614981--1615479 Score: 831
Period size: 52 Copynumber: 9.6 Consensus size: 52
1614971 CGATCGTTGG
* *
1614981 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGTCTCGTAGGA
* *
1615033 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCATTCTCGTAGAA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGTCTCGTAGGA
1615085 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGTCTCGTAGGA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGTCTCGTAGGA
* *
1615137 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGTCTCGTAGGA
* *
1615189 AGATTATTGTTCGAGTTCTAGTCCTTGAAGAAAATTGGGCAGAC-CTGTAGGA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGTCTC-GTAGGA
* *
1615241 AGATTATTTTTCGAGTTCTAGTCCCTGAAGAAAATTGGACAGTCTCGTAGGA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGTCTCGTAGGA
1615293 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGTCTCGTAGGA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGTCTCGTAGGA
* * * *
1615345 AGATTATTGTTCGAGTTCTATTCCCTGAAGAAAATTGGACAGACCCGTAGGA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGTCTCGTAGGA
1615397 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGTCTCGTA-GA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGTCTCGTAGGA
* *
1615448 AGATTATCGTTCGAGTTCTACTCCCTGAAGAA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAA
1615480 TAGAGAGCGA
Statistics
Matches: 420, Mismatches: 25, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
51 33 0.08
52 386 0.92
53 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.30
Consensus pattern (52 bp):
AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGTCTCGTAGGA
Done.