Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008398.1 Hibiscus syriacus cultivar Beakdansim tig00111167_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50278

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5436--5518
32
2.6
31
81
5
103
42
9
12
36
1.75
15808--15840
16
2.1
16
88
5
50
27
6
6
60
1.44
25079--25116
19
2.0
19
100
0
76
31
5
15
47
1.68
26487--26572
35
2.4
36
82
5
95
33
13
9
43
1.77
26512--26574
18
3.6
18
89
2
92
33
11
12
42
1.78
33444--33513
22
3.3
22
78
7
74
34
30
11
24
1.90
33443--33545
21
4.9
22
73
11
92
33
26
13
27
1.94
33726--33772
21
2.2
22
92
3
78
17
48
17
17
1.81
34109--34147
20
2.0
20
100
0
78
51
20
12
15
1.76
34157--34207
20
2.5
21
83
6
68
17
11
19
50
1.76
35689--35787
42
2.4
42
91
0
162
28
34
20
17
1.95
35902--35951
21
2.4
21
86
0
73
18
14
34
34
1.90
36357--36468
21
5.3
21
79
4
100
20
36
16
26
1.93
37989--38056
20
3.4
20
87
4
93
16
16
22
45
1.85
40515--40568
24
2.3
23
87
6
81
38
20
16
24
1.92
41528--41643
61
1.9
60
84
8
155
29
13
23
33
1.93
41555--41643
20
4.4
20
77
9
92
26
11
25
35
1.90
42308--42381
28
2.6
29
85
8
98
51
8
0
40
1.32
42308--42380
29
2.6
29
86
6
96
50
8
0
41
1.32
48269--48307
17
2.3
17
95
0
69
56
10
10
23
1.63

Tables:   1

The End!