Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008399.1 Hibiscus syriacus cultivar Beakdansim tig00111168_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53275

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3795--3864
22
3.3
22
78
7
74
34
30
11
24
1.90
3794--3896
21
4.9
22
73
11
92
33
26
13
27
1.94
4078--4124
22
2.1
22
96
0
85
17
46
19
17
1.84
4462--4500
20
2.0
20
100
0
78
51
20
12
15
1.76
4510--4560
20
2.5
21
83
6
68
17
11
19
50
1.76
6049--6147
42
2.4
42
91
0
162
28
34
20
17
1.95
6262--6311
21
2.4
21
86
0
73
18
14
34
34
1.90
6716--6827
21
5.3
21
79
4
100
20
36
16
26
1.93
8327--8411
20
4.2
20
82
5
100
15
16
21
47
1.83
10936--10989
24
2.2
24
90
0
81
40
20
16
22
1.91
11891--11995
40
2.7
39
77
4
104
37
15
20
27
1.92
11892--12062
20
8.5
21
70
12
81
33
14
22
30
1.93
11932--12086
62
2.6
61
79
11
167
31
12
23
32
1.92
11991--12080
20
4.4
20
75
12
85
26
11
26
35
1.90
12277--12309
15
2.1
16
88
5
50
48
3
0
48
1.17
12750--12825
29
2.6
30
85
8
102
52
7
0
39
1.31
12750--12824
30
2.5
30
87
6
100
52
8
0
40
1.31
18761--18799
17
2.3
17
95
0
69
56
10
10
23
1.63
23493--23730
118
2.0
118
100
0
476
25
15
24
34
1.94
32979--33009
12
2.6
12
94
0
53
6
9
32
51
1.60
38969--39015
2
23.5
2
91
0
76
55
0
44
0
0.99
40831--42326
81
18.6
80
81
3
1454
18
20
23
36
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42821--42860
18
2.2
18
95
0
71
17
20
35
27
1.95
51064--51111
23
2.1
23
84
0
60
37
12
16
33
1.86
51577--51627
23
2.3
23
93
3
86
43
19
1
35
1.63
52006--52077
23
3.2
23
90
2
101
40
19
4
36
1.71
51472--52315
429
2.0
423
92
5
1409
39
11
7
42
1.68

Tables:   1

The End!