Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000084.1 Hibiscus syriacus cultivar Beakdansim tig00000154_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 66784
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.33
Found at i:3936 original size:2 final size:2
Alignment explanation
Indices: 3929--3954 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
3919 TATTATTTTG
3929 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
3955 TAGTTAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:5072 original size:19 final size:19
Alignment explanation
Indices: 5050--5088 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
5040 GTTTACCATC
*
5050 AATTGTAAAGTTTTTATTT
1 AATTATAAAGTTTTTATTT
* *
5069 AATTATAGATTTTTTATTT
1 AATTATAAAGTTTTTATTT
5088 A
1 A
5089 TTTTTTCTTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.59
Consensus pattern (19 bp):
AATTATAAAGTTTTTATTT
Found at i:5809 original size:35 final size:35
Alignment explanation
Indices: 5763--5832 Score: 97
Period size: 35 Copynumber: 2.0 Consensus size: 35
5753 AATCTTAATG
**
5763 GGGTATCAATACTGAAGT-GATAGTATCGGTACCAT
1 GGGTATCAATACCAAAGTGGA-AGTATCGGTACCAT
*
5798 GGGTATTAATACCAAAGTGGAAGTATCGGTACCAT
1 GGGTATCAATACCAAAGTGGAAGTATCGGTACCAT
5833 TCTTGCAATG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
35 29 0.94
36 2 0.06
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (35 bp):
GGGTATCAATACCAAAGTGGAAGTATCGGTACCAT
Found at i:6644 original size:42 final size:42
Alignment explanation
Indices: 6566--6652 Score: 102
Period size: 42 Copynumber: 2.1 Consensus size: 42
6556 TCAAGGGTTC
* * * * *
6566 TATGTGGTCCTTCGGGACATATATGTAATCCTTTGGAACATA
1 TATGCGGTACTTCAGGACACATATGTAATCCATTGGAACATA
* * *
6608 TATGCGGTACTTCAGGACACATATTTGATCCATTGGAATATA
1 TATGCGGTACTTCAGGACACATATGTAATCCATTGGAACATA
6650 TAT
1 TAT
6653 ATGGTCCTTA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.36
Consensus pattern (42 bp):
TATGCGGTACTTCAGGACACATATGTAATCCATTGGAACATA
Found at i:12583 original size:36 final size:36
Alignment explanation
Indices: 12543--12656 Score: 92
Period size: 36 Copynumber: 3.1 Consensus size: 36
12533 ATCTTTAAAA
12543 TTATTTTAAATGATATTTTTTAGGCATTCGACATAC
1 TTATTTTAAATGATATTTTTTAGGCATTCGACATAC
* * ** *
12579 TTATTTTAAACGCATATCACTTTTTA-TC-TTTTA-A-AA
1 TTATTTTAAATG-ATAT---TTTTTAGGCATTCGACATAC
*
12615 TTATTTTAAATGATATTTTTTTAGGCATTCGACCTAC
1 TTATTTTAAATGATA-TTTTTTAGGCATTCGACATAC
*
12652 ATATT
1 TTATT
12657 CCAAAGGTCG
Statistics
Matches: 57, Mismatches: 12, Indels: 17
0.66 0.14 0.20
Matches are distributed among these distances:
33 6 0.11
34 1 0.02
35 6 0.11
36 24 0.42
37 10 0.18
38 3 0.05
39 1 0.02
40 6 0.11
ACGTcount: A:0.31, C:0.12, G:0.08, T:0.49
Consensus pattern (36 bp):
TTATTTTAAATGATATTTTTTAGGCATTCGACATAC
Found at i:12633 original size:72 final size:72
Alignment explanation
Indices: 12513--12656 Score: 254
Period size: 73 Copynumber: 2.0 Consensus size: 72
12503 AAGTTTTTTG
12513 TTAAACGCATATCACTTTTTATCTTTAAAATTATTTTAAATGATA-TTTTTTAGGCATTCGACAT
1 TTAAACGCATATCACTTTTTATCTTTAAAATTATTTTAAATGATATTTTTTTAGGCATTCGACAT
*
12577 ACTTATT
66 ACATATT
*
12584 TTAAACGCATATCACTTTTTATCTTTTAAAATTATTTTAAATGATATTTTTTTAGGCATTCGACC
1 TTAAACGCATATCACTTTTTATC-TTTAAAATTATTTTAAATGATATTTTTTTAGGCATTCGACA
12649 TACATATT
65 TACATATT
12657 CCAAAGGTCG
Statistics
Matches: 69, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
71 23 0.33
72 22 0.32
73 24 0.35
ACGTcount: A:0.32, C:0.13, G:0.07, T:0.48
Consensus pattern (72 bp):
TTAAACGCATATCACTTTTTATCTTTAAAATTATTTTAAATGATATTTTTTTAGGCATTCGACAT
ACATATT
Found at i:13819 original size:3 final size:3
Alignment explanation
Indices: 13813--13871 Score: 118
Period size: 3 Copynumber: 19.7 Consensus size: 3
13803 GGGCTGAATC
13813 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
13861 AAT AAT AAT AA
1 AAT AAT AAT AA
13872 AAAATGGGCA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 56 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:15615 original size:2 final size:2
Alignment explanation
Indices: 15608--15634 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
15598 AAAATTTAAA
15608 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
15635 AATTAATTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:16785 original size:21 final size:21
Alignment explanation
Indices: 16761--16804 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
16751 CAGTAAAAAA
*
16761 TTACTCAAAATATTATTATTT
1 TTACTCAAAATATTAATATTT
*
16782 TTACTTAAAATATTAATATTT
1 TTACTCAAAATATTAATATTT
16803 TT
1 TT
16805 TGATAATTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.39, C:0.07, G:0.00, T:0.55
Consensus pattern (21 bp):
TTACTCAAAATATTAATATTT
Found at i:23843 original size:19 final size:19
Alignment explanation
Indices: 23803--23862 Score: 86
Period size: 20 Copynumber: 3.1 Consensus size: 19
23793 ATCAGATTGT
23803 CCAGGGGGTACAGATTCTCC
1 CCAGGGGGTACAGATTC-CC
23823 CCAGGGGGTACAGATTCCCC
1 CCAGGGGGTACAGATT-CCC
*
23843 CCA-GGGGTACCGATTCCC
1 CCAGGGGGTACAGATTCCC
23861 CC
1 CC
23863 TTTCTAACGG
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
18 5 0.13
19 11 0.29
20 21 0.55
21 1 0.03
ACGTcount: A:0.18, C:0.37, G:0.28, T:0.17
Consensus pattern (19 bp):
CCAGGGGGTACAGATTCCC
Found at i:25162 original size:19 final size:20
Alignment explanation
Indices: 25138--25185 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
25128 AATGATTTTC
*
25138 TTTTGAAAACAAAAAT-AGA
1 TTTTGAAAACAAAAATGAAA
* *
25157 TTTTGAAAGCCAAAATGAAA
1 TTTTGAAAACAAAAATGAAA
25177 TTTTGAAAA
1 TTTTGAAAA
25186 AGGATTTAGA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 14 0.58
20 10 0.42
ACGTcount: A:0.52, C:0.06, G:0.12, T:0.29
Consensus pattern (20 bp):
TTTTGAAAACAAAAATGAAA
Found at i:25794 original size:18 final size:18
Alignment explanation
Indices: 25771--25806 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
25761 GGTTTTTAAT
25771 GCAAATGATATCTCTCTA
1 GCAAATGATATCTCTCTA
25789 GCAAATGATATCTCTCTA
1 GCAAATGATATCTCTCTA
25807 ACAATTTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.22, G:0.11, T:0.33
Consensus pattern (18 bp):
GCAAATGATATCTCTCTA
Found at i:25817 original size:18 final size:18
Alignment explanation
Indices: 25772--25810 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
25762 GTTTTTAATG
*
25772 CAAATGATATCTCTCTAG
1 CAAATGATATCTCTCTAA
25790 CAAATGATATCTCTCTAA
1 CAAATGATATCTCTCTAA
25808 CAA
1 CAA
25811 TTTATATAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.31
Consensus pattern (18 bp):
CAAATGATATCTCTCTAA
Found at i:26643 original size:20 final size:20
Alignment explanation
Indices: 26617--26720 Score: 127
Period size: 20 Copynumber: 5.1 Consensus size: 20
26607 ATCAGATTGT
26617 CCAGGGGGTACAGATTCCCC
1 CCAGGGGGTACAGATTCCCC
* *
26637 TCAGGGGGTACAGATTCCCT
1 CCAGGGGGTACAGATTCCCC
** *
26657 TTAGGGGGAACAGATTCCCTC
1 CCAGGGGGTACAGATTCCC-C
*
26678 CCAGGGGGTACCGATTCCCC
1 CCAGGGGGTACAGATTCCCC
*
26698 CCAGGGGGAACAGATTTCCCC
1 CCAGGGGGTACAGA-TTCCCC
26719 CC
1 CC
26721 CCCCCCGGGG
Statistics
Matches: 71, Mismatches: 11, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
20 48 0.68
21 23 0.32
ACGTcount: A:0.20, C:0.33, G:0.29, T:0.18
Consensus pattern (20 bp):
CCAGGGGGTACAGATTCCCC
Found at i:26695 original size:41 final size:40
Alignment explanation
Indices: 26617--26720 Score: 136
Period size: 41 Copynumber: 2.5 Consensus size: 40
26607 ATCAGATTGT
* * *
26617 CCAGGGGGTACAGATTCCCCTCAGGGGGTACAGATTCCCT
1 CCAGGGGGAACAGATTCCCCCCAGGGGGTACAGATTCCCC
** *
26657 TTAGGGGGAACAGATTCCCTCCCAGGGGGTACCGATTCCCC
1 CCAGGGGGAACAGATTCCC-CCCAGGGGGTACAGATTCCCC
26698 CCAGGGGGAACAGATTTCCCCCC
1 CCAGGGGGAACAGA-TTCCCCCC
26721 CCCCCCGGGG
Statistics
Matches: 54, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
40 16 0.30
41 33 0.61
42 5 0.09
ACGTcount: A:0.20, C:0.33, G:0.29, T:0.18
Consensus pattern (40 bp):
CCAGGGGGAACAGATTCCCCCCAGGGGGTACAGATTCCCC
Found at i:26741 original size:25 final size:26
Alignment explanation
Indices: 26694--26745 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26684 GGTACCGATT
26694 CCCCCCAGGGGGAACAGATTTCCCCC
1 CCCCCCAGGGGGAACAGATTTCCCCC
* * *
26720 CCCCCCCGGGGGTACCGA-TTCCCCC
1 CCCCCCAGGGGGAACAGATTTCCCCC
26745 C
1 C
26746 TAAGAGGTAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.13, C:0.52, G:0.23, T:0.12
Consensus pattern (26 bp):
CCCCCCAGGGGGAACAGATTTCCCCC
Found at i:29705 original size:19 final size:18
Alignment explanation
Indices: 29681--29725 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
29671 TTTTTTTATA
29681 ATAAATATTAAATTAAAAT
1 ATAAATATTAAATT-AAAT
* *
29700 ATAAATGATTGAATTATAT
1 ATAAAT-ATTAAATTAAAT
29719 ATAAATA
1 ATAAATA
29726 AAATAATAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 1 0.04
19 15 0.65
20 7 0.30
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (18 bp):
ATAAATATTAAATTAAAT
Found at i:33942 original size:2 final size:2
Alignment explanation
Indices: 33935--33996 Score: 108
Period size: 2 Copynumber: 31.0 Consensus size: 2
33925 TTTCATATTA
33935 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
33977 AT AT AT AT AT GAT AT A- AT AT
1 AT AT AT AT AT -AT AT AT AT AT
33997 GTGGTAATAA
Statistics
Matches: 58, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.02
2 55 0.95
3 2 0.03
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (2 bp):
AT
Found at i:34988 original size:20 final size:20
Alignment explanation
Indices: 34963--35011 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
34953 ATTAACGTAG
34963 AAATTTATA-TTAATGAATGT
1 AAATTTA-AGTTAATGAATGT
34983 AAATTTAAGTTAATGAATGT
1 AAATTTAAGTTAATGAATGT
35003 AAATTTAAG
1 AAATTTAAG
35012 AAGTTCTATT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
19 1 0.04
20 27 0.96
ACGTcount: A:0.47, C:0.00, G:0.12, T:0.41
Consensus pattern (20 bp):
AAATTTAAGTTAATGAATGT
Found at i:39044 original size:64 final size:64
Alignment explanation
Indices: 38971--39126 Score: 176
Period size: 64 Copynumber: 2.5 Consensus size: 64
38961 TAATGAAGGT
* * * *
38971 ATGCATCGATGCACTACTTGTGCATCGGTGCA-TAAAATACATTCGATG-TTTTATTATTAATGG
1 ATGCATCGATGCACTACTTGTGCATCGATGCACT-AAATACATTCGATGTTTTTATT-TAAAAGA
39034 G
64 G
* * * *
39035 ATGCATCGATGCA-TGCCTTATGCATCGATGCACTAATTGCATTCGATGTTTTTATTTAAAAGAG
1 ATGCATCGATGCACT-ACTTGTGCATCGATGCACTAAATACATTCGATGTTTTTATTTAAAAGAG
*
39099 -TGCATCGATGCACTACCTGTGCATCGAT
1 ATGCATCGATGCACTACTTGTGCATCGAT
39127 ACACCTTTAA
Statistics
Matches: 77, Mismatches: 11, Indels: 9
0.79 0.11 0.09
Matches are distributed among these distances:
63 24 0.31
64 45 0.58
65 8 0.10
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.35
Consensus pattern (64 bp):
ATGCATCGATGCACTACTTGTGCATCGATGCACTAAATACATTCGATGTTTTTATTTAAAAGAG
Found at i:39186 original size:21 final size:21
Alignment explanation
Indices: 39160--39237 Score: 156
Period size: 21 Copynumber: 3.7 Consensus size: 21
39150 TTTAACCTTG
39160 ATGCATCGATGCACTATGAAT
1 ATGCATCGATGCACTATGAAT
39181 ATGCATCGATGCACTATGAAT
1 ATGCATCGATGCACTATGAAT
39202 ATGCATCGATGCACTATGAAT
1 ATGCATCGATGCACTATGAAT
39223 ATGCATCGATGCACT
1 ATGCATCGATGCACT
39238 CTGCCCAGAA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 57 1.00
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (21 bp):
ATGCATCGATGCACTATGAAT
Found at i:42045 original size:3 final size:3
Alignment explanation
Indices: 42037--42066 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
42027 TTGATTTAAG
42037 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
42067 AGTGAGGTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:42379 original size:18 final size:18
Alignment explanation
Indices: 42310--42379 Score: 72
Period size: 18 Copynumber: 3.9 Consensus size: 18
42300 ATTCTAAATA
*
42310 TTTACAGTTATCAGATGAT
1 TTTACAATTATCAGAT-AT
*
42329 TTT-CAGTTATCAGATA-
1 TTTACAATTATCAGATAT
* * *
42345 ATTACAAATATAAGATAT
1 TTTACAATTATCAGATAT
42363 TTTACAATTATCAGATA
1 TTTACAATTATCAGATA
42380 CATATTAATA
Statistics
Matches: 42, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
16 2 0.05
17 11 0.26
18 26 0.62
19 3 0.07
ACGTcount: A:0.40, C:0.10, G:0.10, T:0.40
Consensus pattern (18 bp):
TTTACAATTATCAGATAT
Found at i:44699 original size:22 final size:22
Alignment explanation
Indices: 44657--44700 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
44647 AACAGTTAAT
* *
44657 AATCAACATTTAATGAGTCAAC
1 AATCAACAATTAACGAGTCAAC
44679 AATCAACAGATTAACGA-TCAAC
1 AATCAACA-ATTAACGAGTCAAC
44701 GAGTCGATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.48, C:0.20, G:0.09, T:0.23
Consensus pattern (22 bp):
AATCAACAATTAACGAGTCAAC
Found at i:45016 original size:19 final size:19
Alignment explanation
Indices: 44992--45032 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
44982 GCATGCTCAC
44992 GGTCGATGGTCACTGAGGT
1 GGTCGATGGTCACTGAGGT
45011 GGTCGATGGTCACTGAGGT
1 GGTCGATGGTCACTGAGGT
45030 GGT
1 GGT
45033 TTAAGAGGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.15, C:0.15, G:0.44, T:0.27
Consensus pattern (19 bp):
GGTCGATGGTCACTGAGGT
Found at i:51574 original size:2 final size:2
Alignment explanation
Indices: 51567--51633 Score: 134
Period size: 2 Copynumber: 33.5 Consensus size: 2
51557 TTATCCTTGC
51567 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
51609 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
51634 GTGTCTCAAG
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 65 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:57659 original size:12 final size:12
Alignment explanation
Indices: 57642--57666 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
57632 ACAAAGCACC
57642 ATTTGGTGCCTA
1 ATTTGGTGCCTA
57654 ATTTGGTGCCTA
1 ATTTGGTGCCTA
57666 A
1 A
57667 ATTATTTGAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.20, C:0.16, G:0.24, T:0.40
Consensus pattern (12 bp):
ATTTGGTGCCTA
Found at i:62134 original size:10 final size:10
Alignment explanation
Indices: 62119--62147 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
62109 AGAGGAGATG
62119 GAGGAAAGCT
1 GAGGAAAGCT
62129 GAGGAAAGCT
1 GAGGAAAGCT
62139 GAGGAAAGC
1 GAGGAAAGC
62148 GAAGATGATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.41, C:0.10, G:0.41, T:0.07
Consensus pattern (10 bp):
GAGGAAAGCT
Done.