Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000840.1 Hibiscus syriacus cultivar Beakdansim tig00001622_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76801

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3759--3788
12
2.4
13
94
5
53
83
0
10
6
0.81
3756--3814
16
4.1
15
74
22
54
74
3
15
6
1.16
5300--5338
2
19.5
2
100
0
78
48
0
0
51
1.00
10868--10904
20
1.9
19
89
10
58
45
10
24
18
1.81
15752--15795
21
2.1
21
82
0
52
20
15
27
36
1.93
19484--19509
10
2.6
10
100
0
52
0
7
0
92
0.39
19676--19722
16
3.1
15
79
11
51
21
6
0
72
1.07
19686--19723
17
2.3
17
90
4
60
18
7
0
73
1.06
19685--19723
16
2.3
18
82
13
55
17
7
0
74
1.05
19797--19857
29
2.1
29
81
6
70
8
19
0
72
1.10
19808--19870
30
2.1
30
88
5
92
7
15
1
74
1.12
22993--23044
27
2.0
25
92
7
86
75
3
17
3
1.11
22995--23043
13
3.8
13
84
15
66
75
4
18
2
1.06
23115--23252
69
2.0
69
89
0
213
37
22
14
25
1.92
24154--24259
32
3.4
31
83
6
133
31
12
19
36
1.89
24154--24272
32
3.8
32
83
6
127
31
13
19
35
1.90
24819--25183
106
3.4
105
82
3
372
35
23
18
22
1.95
25488--25545
22
2.6
23
83
8
75
29
18
12
39
1.87
25535--25674
65
2.2
65
92
0
226
34
18
11
35
1.87
25415--25778
174
2.1
167
86
3
485
32
17
12
37
1.87
25627--25711
37
2.3
37
85
2
109
24
18
15
41
1.89
25562--25813
102
2.5
102
86
1
328
30
17
11
39
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25789--25828
15
2.7
15
96
0
71
27
25
12
35
1.92
25866--25968
36
2.8
37
89
2
172
30
19
12
37
1.89
25990--26080
37
2.5
36
83
1
110
24
17
14
43
1.86
25990--26097
36
3.0
36
79
4
110
24
16
13
45
1.84
26097--26170
39
1.9
39
86
2
105
45
18
8
27
1.77
26181--26338
84
1.9
85
85
1
219
32
23
18
25
1.97
27423--27459
17
2.2
17
90
4
58
18
8
0
72
1.08
27422--27459
16
2.2
18
81
13
53
18
7
0
73
1.06
31631--31679
18
2.7
18
90
0
80
28
30
22
18
1.97
50729--50827
45
2.2
45
80
3
101
37
6
17
39
1.74
50859--50928
31
2.3
31
80
2
79
31
5
21
41
1.76
51072--51159
23
3.8
23
76
8
90
14
22
25
37
1.92
54949--54988
2
20.0
2
100
0
80
50
0
0
50
1.00
57064--57124
23
2.5
24
78
5
70
40
4
3
50
1.40
58449--58505
20
2.8
20
75
17
62
52
3
0
43
1.18
58443--58495
22
2.5
22
81
12
65
62
0
0
37
0.96

Tables:   1

The End!