Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008400.1 Hibiscus syriacus cultivar Beakdansim tig00111169_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  142036

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2052--2160
31
3.6
30
78
9
98
36
10
10
43
1.72
2973--3013
2
20.5
2
100
0
82
51
0
0
48
1.00
11471--11518
25
1.9
25
84
16
64
33
0
4
62
1.14
14843--15130
153
1.9
153
95
0
522
37
18
19
24
1.93
25634--25792
80
2.0
80
89
0
246
37
15
8
38
1.77
34566--34646
23
3.5
23
75
1
81
51
7
8
32
1.60
34703--34763
21
3.2
21
65
29
64
31
4
21
42
1.74
34696--34813
35
3.3
37
88
8
172
32
4
19
44
1.70
39237--39348
37
3.1
36
80
8
113
35
7
16
40
1.77
40626--40738
56
2.0
56
94
0
199
29
19
11
39
1.87
43820--43862
2
22.0
2
90
4
70
51
2
0
46
1.13
47476--47584
24
4.5
24
80
8
123
19
11
15
54
1.71
67585--67613
2
14.5
2
100
0
58
0
51
0
48
1.00
67941--68001
21
2.9
21
80
9
61
40
1
16
40
1.58
68691--68777
29
3.0
29
87
1
120
33
12
11
42
1.79
71190--71277
32
2.9
30
79
14
99
26
22
9
42
1.83
72369--72446
32
2.5
30
76
13
86
26
21
7
43
1.80
74967--75010
21
2.0
21
82
4
52
52
2
6
38
1.41
78017--78041
6
4.2
6
100
0
50
16
0
0
84
0.63
84985--85014
4
7.5
4
100
0
60
26
0
0
73
0.84
87168--87197
2
15.0
2
100
0
60
50
0
0
50
1.00
87478--87504
2
13.5
2
100
0
54
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91649--91742
29
3.1
29
80
10
84
50
3
2
44
1.30
92025--92080
23
2.3
23
84
6
67
48
0
1
50
1.11
97421--97513
10
9.7
9
78
13
87
16
26
27
29
1.97
97421--97513
19
4.8
20
79
15
104
16
26
27
29
1.97
97421--97513
29
3.2
28
87
6
123
16
26
27
29
1.97
97441--97519
9
8.3
9
78
12
52
16
29
29
25
1.97
97516--97573
5
10.8
5
78
14
62
18
51
22
6
1.70
97516--97580
22
3.0
22
100
0
130
18
49
23
9
1.76
104743--104845
9
10.8
9
75
12
80
16
26
29
28
1.97
104743--104838
10
9.9
10
69
9
56
16
26
28
29
1.97
104743--104819
19
3.9
21
86
6
74
16
25
27
29
1.97
104764--104845
19
4.3
19
92
7
132
14
26
31
26
1.95
104848--104904
5
10.8
5
75
17
53
19
50
22
7
1.71
104848--104912
21
3.0
21
97
2
121
18
47
24
9
1.77
104865--104919
26
2.0
27
89
6
85
18
45
25
10
1.82
109240--109314
37
2.0
37
82
10
91
49
4
1
45
1.29
114931--114971
14
2.6
17
82
17
54
68
14
7
9
1.39
123223--124686
4
366.0
4
94
0
2403
46
25
3
25
1.68
138563--138592
2
15.0
2
100
0
60
50
0
0
50
1.00
141481--141511
2
16.0
2
93
6
55
51
0
0
48
1.00

Tables:   1

The End!