genome.fa.s8402.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008402.1 Hibiscus syriacus cultivar Beakdansim tig00111171_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  226027

Tables:   1   

This is table  1  of  1  ( 84 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1311--1341	16	1.9	16	100	0	62	51	19	9	19	1.74
10257--10312	26	2.2	26	100	0	112	35	28	7	28	1.84
12812--12970	79	2.0	79	96	0	291	29	23	15	30	1.96
13636--13677	21	2.0	22	82	17	54	14	7	2	76	1.10
13621--13678	26	2.2	26	77	17	66	18	6	1	72	1.16
15297--15336	19	2.1	19	85	0	53	60	0	0	40	0.97
29072--29105	7	4.9	7	92	0	59	52	0	2	44	1.16
32902--32993	33	2.8	33	98	0	175	16	40	6	36	1.74
34261--34316	25	2.2	25	87	9	78	41	10	1	46	1.49
40427--40467	21	2.0	21	95	0	73	56	0	2	41	1.13
42675--42711	18	2.1	18	100	0	74	21	48	16	13	1.80
45191--45281	24	3.8	24	79	2	103	25	19	18	36	1.95
45359--45433	35	2.1	35	87	0	105	12	25	28	34	1.91
52041--52080	18	2.4	16	84	12	53	37	2	2	57	1.26
52077--52118	12	3.6	12	81	15	52	64	0	0	35	0.94
52077--52127	22	2.4	22	83	9	70	60	0	0	39	0.97
53731--53778	18	2.7	18	81	12	55	75	6	2	16	1.11
53729--53771	19	2.3	18	80	4	50	74	6	2	16	1.14
55035--55137	3	34.7	3	86	1	145	66	0	0	32	0.98
55292--55819	118	4.5	118	94	2	881	28	20	15	35	1.94
56463--56835	83	4.5	83	96	0	667	37	21	12	28	1.90
56701--57018	133	2.4	133	99	0	627	37	23	13	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56925--57168	50	4.9	50	100	0	488	38	23	13	23	1.91
58300--58383	17	4.8	17	73	16	57	2	21	0	76	0.90
58300--58382	27	3.1	28	72	18	79	2	21	0	75	0.91
58298--58386	16	5.5	16	72	19	69	2	22	0	75	0.92
68910--68953	18	2.4	18	77	7	54	70	2	0	27	0.99
71049--71151	3	34.7	3	88	1	154	66	0	0	33	0.99
73452--73482	16	1.9	16	93	0	53	9	0	9	80	0.90
81045--81087	19	2.3	19	95	0	77	34	20	18	25	1.96
84839--84968	65	2.0	65	100	0	260	30	20	16	32	1.95
85825--85867	20	2.2	20	82	0	50	46	0	0	53	1.00
89389--89424	2	18.0	2	100	0	72	50	0	0	50	1.00
96313--96352	20	2.0	20	85	0	53	52	0	0	47	1.00
97325--97352	6	4.7	6	100	0	56	17	14	32	35	1.90
101729--101778	24	2.1	24	84	0	64	24	4	12	60	1.49
102253--102285	16	2.1	16	88	11	50	15	9	0	75	1.03
102255--102285	11	2.8	11	95	0	53	16	9	0	74	1.07
106387--106429	16	2.5	17	81	11	52	39	2	2	55	1.25
106398--106429	16	2.0	16	93	0	55	40	3	0	56	1.15
108728--109075	169	2.0	172	96	3	650	27	12	33	27	1.93
124158--124276	43	2.8	43	89	0	184	44	0	0	53	1.12
125160--125234	29	2.6	30	79	12	84	46	0	1	52	1.09
125184--125231	10	5.0	10	78	16	57	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
129903--129954	20	2.5	21	82	14	56	40	3	0	55	1.18
131214--131431	108	2.0	108	98	0	420	28	13	15	42	1.85
133282--133319	20	1.9	20	88	0	58	26	26	5	42	1.76
136732--137102	184	2.0	183	86	5	516	16	23	16	43	1.88
137447--137513	33	2.0	34	97	2	127	58	17	2	20	1.52
140000--140055	27	2.1	27	100	0	112	10	17	19	51	1.74
143903--143983	35	2.3	36	87	6	112	43	20	0	35	1.53
143922--143995	36	2.1	36	82	5	89	44	25	1	28	1.62
144469--144761	148	2.0	148	88	2	437	45	9	8	37	1.67
144795--144852	22	2.8	20	65	10	53	29	10	8	51	1.65
144975--145053	35	2.3	35	86	0	104	31	1	22	44	1.61
145603--145645	6	7.0	6	80	15	52	44	2	0	53	1.13
145593--145645	18	2.9	18	81	10	63	45	1	0	52	1.11
145603--145645	19	2.3	18	88	11	61	44	2	0	53	1.13
145603--145658	18	3.1	18	84	7	51	41	3	0	55	1.17
148731--148774	18	2.4	18	96	0	79	47	13	20	18	1.82
158709--158784	29	2.6	29	91	0	125	43	11	13	31	1.80
163476--163551	29	2.6	29	91	0	125	43	11	13	31	1.80
164516--164580	31	2.1	31	100	0	130	3	29	32	35	1.73
164808--164846	20	2.0	20	94	0	69	12	17	30	38	1.88
164808--164847	9	4.2	9	81	12	53	12	17	32	37	1.87
164834--164879	21	2.2	21	92	3	76	13	28	26	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
164880--164939	29	2.1	29	96	0	111	18	28	28	25	1.98
166197--166824	211	3.0	209	98	1	1224	37	14	14	33	1.87
178408--178434	13	2.1	13	100	0	54	44	7	14	33	1.73
182311--182350	21	1.9	21	84	0	53	37	20	0	42	1.52
186333--186885	277	2.0	278	96	1	1029	37	14	8	38	1.77
187580--187611	10	3.3	10	91	8	57	62	0	0	37	0.95
194542--194566	13	1.9	13	100	0	50	24	32	4	40	1.73
204844--204886	2	21.5	2	100	0	86	48	0	0	51	1.00
207034--207074	21	2.0	21	100	0	82	34	24	17	24	1.96
210579--210608	15	2.0	15	100	0	60	40	13	6	40	1.71
211761--211860	44	2.3	44	96	1	184	48	12	5	35	1.62
213649--213679	2	15.5	2	93	0	53	51	0	0	48	1.00
218075--218192	17	6.9	17	81	13	109	68	0	30	0	0.95
218095--218203	11	9.7	11	76	11	62	69	0	28	1	0.98
218069--218191	3	40.7	3	78	15	105	69	0	30	0	0.95
218417--218460	18	2.4	19	81	11	56	45	0	2	52	1.13
220210--220249	18	2.3	19	83	12	50	62	7	2	27	1.35
225511--225543	15	2.1	16	88	5	50	9	24	15	51	1.72

Tables:   1

The End!