genome.fa.s8404.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008404.1 Hibiscus syriacus cultivar Beakdansim tig00111173_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108213

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1924--1996	24	3.0	24	85	0	101	39	23	9	27	1.85
5068--5107	2	20.0	2	100	0	80	50	0	0	50	1.00
20867--20896	12	2.6	11	94	5	51	60	0	40	0	0.97
22308--22372	23	2.8	23	71	2	67	21	18	18	41	1.90
25253--25348	23	4.3	23	81	4	81	33	25	23	17	1.96
25444--25482	14	2.7	15	80	8	53	33	25	10	30	1.89
27901--27947	15	3.4	14	80	11	53	34	2	0	63	1.06
27928--27952	4	6.2	4	100	0	50	24	0	0	76	0.80
37012--37054	18	2.2	18	84	12	50	46	20	2	30	1.63
44413--44446	18	1.9	18	88	5	52	29	23	23	23	1.99
44656--44686	16	1.9	16	93	0	53	54	16	9	19	1.68
45355--45393	6	6.8	6	88	11	64	33	51	15	0	1.44
45360--45391	16	2.0	16	100	0	64	31	56	12	0	1.37
53237--53286	27	1.9	26	84	8	66	50	6	4	40	1.46
53762--53821	21	2.9	21	75	9	68	45	16	0	38	1.48
54023--54076	20	2.7	21	82	8	76	31	31	12	24	1.93
54086--54128	20	2.2	20	87	8	61	39	20	18	20	1.93
54095--54143	20	2.5	20	86	0	71	40	16	18	24	1.90
54618--54671	20	2.7	19	80	8	63	14	12	22	50	1.77
57381--57432	21	2.5	21	87	3	70	38	17	23	21	1.93
57400--57493	41	2.3	39	82	10	116	35	23	20	21	1.96
57421--57499	20	3.9	20	80	3	95	34	25	18	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57418--57495	41	1.9	41	94	0	138	37	24	17	20	1.94
74073--74209	21	6.7	21	71	12	79	36	22	13	27	1.91
74241--74289	20	2.5	20	89	0	80	32	26	16	24	1.96
74179--74422	77	3.2	77	95	0	434	36	21	15	26	1.93
74318--74365	20	2.4	20	86	6	62	33	25	16	25	1.96
74338--74536	57	3.5	57	90	4	321	36	22	16	25	1.94
74261--74656	191	2.1	191	93	0	666	35	21	15	27	1.94
74519--74556	20	1.9	20	94	0	67	36	18	13	31	1.89
74456--74613	77	2.1	77	90	0	244	35	20	16	27	1.94
74533--74657	57	2.2	57	91	0	196	33	19	17	29	1.95
74184--74656	134	3.5	134	77	11	552	35	21	15	27	1.94
74650--74732	20	4.2	20	69	9	71	24	14	25	36	1.93
76446--76486	2	20.5	2	100	0	82	51	0	0	48	1.00
77266--77349	23	3.7	23	93	0	132	51	0	27	21	1.48
77292--77403	58	1.9	57	89	5	172	51	0	28	18	1.52
78246--78348	26	4.0	26	98	0	197	50	6	2	39	1.44
94222--94301	36	2.2	36	82	4	99	17	36	12	33	1.87
94848--95045	101	2.0	101	95	2	362	39	7	7	45	1.60
97421--97455	2	17.5	2	100	0	70	51	0	0	48	1.00

Tables:   1

The End!