genome.fa.s8405.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008405.1 Hibiscus syriacus cultivar Beakdansim tig00111174_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85389

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1029--1077	21	2.3	21	89	0	80	6	32	40	20	1.77
1244--1271	13	2.2	13	100	0	56	64	0	0	35	0.94
1574--1782	20	10.4	20	82	11	207	42	25	14	17	1.88
2717--2770	24	2.2	24	93	0	90	24	18	16	40	1.90
4991--5026	18	2.0	18	94	0	63	55	25	2	16	1.55
5346--5391	20	2.3	20	92	0	74	39	21	21	17	1.93
5549--5724	66	2.6	65	89	8	257	52	17	2	27	1.56
7058--7155	21	4.7	21	74	9	85	22	19	33	24	1.97
7537--7586	21	2.4	21	82	0	64	36	30	14	20	1.91
9249--9316	20	3.4	20	91	4	102	50	22	16	11	1.77
9329--9367	19	2.0	19	85	5	51	15	12	23	48	1.79
9857--10038	20	9.1	20	81	1	186	18	14	23	42	1.88
9941--9996	21	2.7	21	83	2	69	23	7	25	44	1.78
9863--10035	81	2.2	79	86	4	231	19	13	24	42	1.88
10044--10089	20	2.3	20	92	0	74	21	19	21	36	1.95
12081--12157	35	2.2	35	100	0	154	12	38	2	45	1.57
12390--12480	12	7.8	12	80	9	91	34	31	5	28	1.80
13842--13965	50	2.5	51	82	4	162	26	24	20	28	1.99
17525--17596	26	2.9	25	67	26	62	63	4	6	25	1.37
19861--19899	20	2.0	19	90	5	60	43	0	23	33	1.54
20427--20482	30	1.9	28	89	7	85	64	0	1	33	1.04
22184--22233	25	2.1	23	85	7	64	34	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26399--26478	18	4.1	20	83	15	105	30	32	18	18	1.95
26399--26475	40	1.9	40	94	0	136	31	29	19	19	1.96
29380--29429	20	2.4	22	77	16	61	20	18	24	38	1.93
29507--29553	23	2.0	23	83	0	58	21	25	21	31	1.98
31031--31079	19	2.7	19	84	6	57	26	0	4	69	1.06
31030--31088	16	3.4	18	80	17	63	27	0	3	69	1.04
31139--31172	14	2.3	15	90	5	52	26	0	5	67	1.13
36307--36345	15	2.7	15	84	4	53	43	17	0	38	1.50
36836--36884	21	2.3	21	86	6	64	51	26	6	16	1.68
36972--37015	2	22.0	2	95	0	79	47	0	0	52	1.00
38529--38605	37	2.1	37	85	4	102	48	1	3	46	1.28
38745--38787	20	2.3	19	88	8	61	25	20	4	48	1.69
39729--39844	60	1.9	60	82	3	144	43	10	8	37	1.70
40894--40935	2	21.0	2	100	0	84	50	0	0	50	1.00
42659--42709	3	17.0	3	79	0	57	39	0	0	60	0.97
42669--42709	15	2.7	15	92	0	73	36	0	0	63	0.95
47736--47799	20	3.2	20	65	12	51	42	9	20	28	1.83
47586--48485	113	7.8	113	80	8	928	38	14	19	27	1.90
47586--48378	225	3.5	223	91	4	1184	37	14	19	28	1.91
48185--48590	120	3.3	122	88	5	563	41	15	18	23	1.89
48735--48775	15	2.7	15	88	0	64	39	0	0	60	0.96
48727--48772	12	3.5	13	78	16	51	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49218--49251	11	2.9	12	86	8	52	82	8	8	0	0.85
50151--50226	29	2.7	27	73	13	64	27	1	3	67	1.17
50493--50550	29	2.0	30	86	3	82	46	1	0	51	1.11
58457--58504	23	2.1	23	88	0	69	35	12	18	33	1.89
58931--58993	23	2.7	23	92	0	99	38	20	4	36	1.74
59413--59478	34	1.9	34	96	0	123	16	16	18	48	1.82
59751--59787	18	2.1	18	89	0	56	51	10	5	32	1.60
60224--60286	23	2.7	23	92	0	99	38	20	4	36	1.74
60628--60693	25	2.6	25	80	0	87	42	13	9	34	1.76
63162--63834	183	3.7	183	96	0	1197	33	16	15	33	1.91
65298--65378	3	27.0	3	75	0	72	23	34	6	35	1.80
65302--65390	12	7.4	12	84	0	88	21	34	7	35	1.82
65302--65393	18	5.1	18	77	0	76	20	34	7	36	1.81
65314--65390	36	2.1	36	90	0	118	20	35	9	35	1.85
65302--65393	6	15.3	6	79	0	67	20	34	7	36	1.81
66977--67986	199	5.1	199	96	0	1855	31	16	15	36	1.90
66977--67986	396	2.5	398	96	0	1864	31	16	15	36	1.90
68095--68142	18	2.6	19	86	6	71	56	10	2	31	1.45
69932--69997	33	2.0	33	90	0	105	22	48	0	28	1.51
70031--70095	21	3.1	21	79	0	76	16	30	13	38	1.88
72321--72363	20	2.3	18	85	14	61	20	16	11	51	1.75
72507--72553	20	2.3	20	89	10	78	17	17	10	55	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72293--72765	181	2.6	182	89	1	689	26	16	14	42	1.86
72832--73318	229	2.1	228	96	0	884	39	7	8	44	1.63
78698--78744	21	2.2	21	88	0	76	34	19	21	25	1.96
79339--79386	23	2.2	23	85	7	64	45	4	2	47	1.33
80898--80942	5	9.0	5	85	9	56	55	0	4	40	1.20
83360--83399	3	13.3	3	100	0	80	67	0	0	32	0.91
83636--83688	2	28.0	2	85	11	76	47	0	1	50	1.12
83636--83688	13	4.2	13	92	2	90	47	0	1	50	1.12
84648--84700	2	27.5	2	92	7	92	52	0	0	47	1.00

Tables:   1

The End!