genome.fa.s8407.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008407.1 Hibiscus syriacus cultivar Beakdansim tig00111176_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88503

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3538--3672	29	4.8	29	76	12	118	40	21	5	32	1.75
3555--3682	55	2.3	57	81	6	145	41	21	6	31	1.77
3562--3715	29	5.4	29	74	9	129	40	22	7	28	1.82
3723--3769	18	2.7	18	96	3	87	12	23	46	17	1.82
6930--6982	27	2.0	27	81	7	63	39	1	9	49	1.46
14042--14100	29	2.1	29	81	6	68	37	1	11	49	1.50
16415--16473	29	2.1	29	81	6	68	37	1	11	49	1.50
18793--18851	29	2.1	29	81	6	68	37	1	11	49	1.50
21215--21270	13	4.5	13	80	13	73	16	50	21	12	1.78
21247--21280	17	1.9	18	94	5	61	17	41	23	17	1.90
21288--21369	29	2.8	29	92	0	137	21	8	24	45	1.80
28434--28470	13	2.8	13	100	0	74	16	48	24	10	1.77
28494--28574	29	2.8	29	96	0	144	20	9	23	45	1.81
28494--28595	29	3.5	29	90	0	105	22	8	24	44	1.81
28494--28617	29	4.3	29	88	0	104	24	8	23	44	1.80
31117--31234	29	4.1	29	83	4	150	41	21	5	31	1.77
31120--31233	57	2.0	58	87	5	169	39	21	6	32	1.78
38886--38995	24	4.6	24	76	10	102	47	17	15	20	1.83
38890--38981	12	7.8	12	71	16	66	47	18	15	18	1.82
38888--38978	47	1.9	47	84	10	123	48	17	15	18	1.82
41412--41485	5	13.0	5	74	23	58	9	21	51	17	1.73
41412--41485	23	3.4	23	82	17	104	9	21	51	17	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41406--41464	18	3.3	18	100	0	118	11	22	49	16	1.78
42293--42412	29	4.2	29	80	4	136	40	20	5	34	1.74
45742--45879	28	4.9	29	87	3	185	36	22	5	35	1.76
45742--45878	57	2.4	55	85	7	186	37	21	5	35	1.76
53272--53366	29	3.3	29	89	2	156	33	23	7	35	1.83
53361--53399	17	2.2	18	95	4	71	7	25	48	17	1.74
53397--53460	19	3.4	19	84	0	83	26	31	25	17	1.97
53548--53572	12	2.1	12	100	0	50	40	36	0	24	1.55
60382--60440	29	2.1	29	81	6	68	35	1	13	49	1.52
62349--62416	10	7.0	9	75	15	55	19	26	23	30	1.98
62349--62416	9	6.9	10	75	18	54	19	26	23	30	1.98
62349--62423	29	2.5	30	85	8	100	18	25	25	30	1.98
62454--62494	5	7.8	5	84	10	55	19	53	21	4	1.63
62437--62501	22	3.0	22	97	0	121	18	47	23	10	1.79
62491--62535	7	6.4	7	100	0	90	15	28	28	26	1.96
69667--69760	10	9.8	9	72	13	62	18	25	26	29	1.98
69667--69705	21	1.9	21	89	5	62	17	25	23	33	1.96
69669--69766	19	5.1	19	76	14	69	16	27	26	29	1.97
69667--69741	29	2.5	30	87	8	109	18	26	25	29	1.98
69780--69830	5	9.8	5	87	8	75	19	54	21	3	1.60
69763--69820	22	2.6	22	97	0	107	18	50	22	8	1.74
69827--69857	7	4.4	7	100	0	62	16	29	29	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74862--74920	29	2.1	29	81	6	68	37	1	11	49	1.50
84236--84294	29	2.1	29	84	6	77	35	1	11	50	1.49

Tables:   1

The End!