genome.fa.s8409.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008409.1 Hibiscus syriacus cultivar Beakdansim tig00111179_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81670

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3554--3660	24	4.5	24	75	6	101	50	16	14	18	1.78
3556--3625	12	5.8	12	75	6	61	52	18	12	15	1.74
3556--3662	48	2.2	48	83	6	128	50	16	14	17	1.78
6136--6256	29	4.2	29	80	1	118	43	19	5	31	1.74
6172--6282	57	1.9	58	88	1	170	39	23	6	30	1.79
6137--6318	86	2.1	87	84	1	231	41	22	7	28	1.80
6319--6348	13	2.3	13	94	0	51	16	23	43	16	1.87
8390--8496	24	4.5	24	73	6	92	50	15	12	21	1.77
8390--8498	48	2.3	48	83	3	130	50	15	12	21	1.77
10969--11125	29	5.3	29	77	4	116	41	22	5	30	1.77
10980--11155	90	2.0	88	84	2	226	43	21	4	30	1.73
11167--11191	13	1.9	13	100	0	50	20	16	48	16	1.82
12638--12696	29	2.1	29	81	6	68	37	1	11	49	1.50
15011--15069	29	2.1	29	81	6	68	37	1	11	49	1.50
17385--17443	29	2.1	29	81	6	68	37	1	11	49	1.50
22133--22190	28	2.1	27	83	3	71	37	1	10	50	1.47
24504--24562	29	2.1	29	81	6	68	37	1	11	49	1.50
27612--27663	9	5.3	10	82	13	72	13	19	30	36	1.90
27678--27748	18	3.9	17	84	13	88	18	45	19	16	1.86
27711--27761	20	2.5	20	96	0	93	17	39	23	19	1.92
27729--27769	7	6.0	7	78	16	50	14	34	26	24	1.94
27769--27850	29	2.8	29	98	0	155	18	10	29	41	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34942--34993	9	5.3	10	82	13	72	13	19	30	36	1.90
35008--35078	18	3.9	17	84	13	88	16	45	21	16	1.86
35036--35064	13	2.3	13	94	5	51	17	44	24	13	1.85
35056--35099	7	6.4	7	80	15	56	13	36	27	22	1.92
34996--35091	20	5.0	20	86	11	105	16	42	20	19	1.89
35099--35180	29	2.8	29	98	0	155	18	10	29	41	1.84
35099--35252	29	5.3	29	75	6	96	27	7	24	40	1.82
36685--36743	29	2.1	29	81	6	68	37	1	11	49	1.50
41509--41568	18	3.2	18	88	7	75	16	46	20	16	1.84
41531--41562	13	2.5	13	100	0	64	15	46	25	12	1.81
41536--41595	8	7.5	8	78	21	56	16	38	23	21	1.93
41549--41596	10	5.6	9	85	14	50	18	35	22	22	1.96
42869--42904	18	2.0	18	88	0	54	52	0	16	30	1.44
44041--44130	23	3.8	24	86	1	121	27	14	18	38	1.90
44208--44282	35	2.1	35	95	0	132	9	29	29	32	1.88
46261--46296	13	2.8	13	91	0	63	16	47	16	19	1.83
46255--46322	31	2.2	31	86	5	102	16	45	20	17	1.85
46277--46328	18	2.7	18	85	8	59	15	44	21	19	1.87
46296--46336	8	5.6	8	78	21	54	14	39	24	21	1.91
46291--46322	13	2.5	13	89	0	55	15	43	25	15	1.86
47632--47667	18	2.0	18	88	0	54	52	0	16	30	1.44
48804--48893	23	3.8	24	86	1	121	27	14	18	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48971--49045	35	2.1	35	92	0	123	9	28	29	33	1.88
50559--50628	12	5.8	12	80	6	79	51	18	15	14	1.77
50557--50665	48	2.3	47	85	3	137	47	17	16	18	1.83
50557--50665	24	4.5	25	78	6	109	47	17	16	18	1.83
51806--51841	18	2.0	18	88	0	54	30	16	0	52	1.44
53117--53184	8	8.5	8	76	18	63	23	23	36	16	1.94
53138--53166	15	1.9	15	100	0	58	31	27	27	13	1.94
53158--53228	13	5.5	13	93	0	115	16	21	45	16	1.86
55265--55339	35	2.1	35	92	0	123	33	29	28	9	1.88
55417--55491	24	3.2	24	88	1	116	36	21	17	25	1.95
55421--55497	23	3.3	23	85	3	109	36	20	18	24	1.95
55400--55513	47	2.4	47	79	5	124	40	19	14	25	1.90
56650--56685	18	2.0	18	88	0	54	30	16	0	52	1.44
57981--58019	7	5.3	7	82	11	51	28	25	33	12	1.93
57980--58019	15	2.7	15	92	0	71	27	25	35	12	1.92
57961--58035	8	9.5	8	76	19	70	24	24	36	16	1.94
58009--58084	13	5.5	13	79	14	80	15	21	46	17	1.84
58017--58057	18	2.3	18	95	0	73	9	21	48	19	1.77
58009--58070	31	2.0	31	93	0	106	14	20	46	17	1.83
65075--65133	29	2.1	29	81	6	68	37	1	11	49	1.50
67449--67507	29	2.1	29	81	6	68	37	1	11	49	1.50
69821--69879	29	2.1	29	81	6	68	37	1	11	49	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72190--72248	29	2.1	29	81	6	68	37	1	11	49	1.50
76899--76955	28	2.1	28	80	6	64	38	1	12	47	1.51
81542--81598	27	2.2	27	78	12	66	36	3	10	49	1.55

Tables:   1

The End!