Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000841.1 Hibiscus syriacus cultivar Beakdansim tig00001623_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66347

Tables:   1   

This is table  1  of  1  ( 81 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7032--7062
11
2.8
11
95
0
53
74
0
9
16
1.07
7032--7064
16
2.1
16
88
11
50
75
0
9
15
1.03
7539--7588
24
2.1
24
85
7
66
60
14
2
24
1.45
8873--8942
35
2.0
35
83
5
88
24
11
32
31
1.91
10215--10244
2
15.0
2
100
0
60
50
0
0
50
1.00
11940--12285
183
1.9
183
85
1
487
32
17
14
35
1.91
14118--14302
43
4.3
43
86
2
228
29
20
22
27
1.99
14118--14302
87
2.1
86
85
3
237
29
20
22
27
1.99
22255--22297
19
2.1
21
83
8
54
41
9
6
41
1.64
23334--23380
14
3.7
14
71
26
50
44
0
4
51
1.21
23333--23382
23
2.1
24
96
3
93
48
0
4
48
1.20
23548--23639
7
13.3
7
80
11
91
17
1
28
53
1.51
23553--23639
14
6.3
14
84
7
106
17
1
28
52
1.51
23712--23745
9
3.9
9
84
7
52
38
0
5
55
1.24
23714--23752
17
2.2
18
95
4
71
41
2
5
51
1.38
23771--23825
15
3.7
15
72
15
51
56
0
0
43
0.99
24099--24150
21
2.5
21
83
0
59
23
1
23
51
1.58
24118--24156
14
2.8
14
84
0
51
20
0
28
51
1.48
24234--24307
20
3.8
20
84
12
82
41
4
5
48
1.45
24231--24311
39
2.1
39
84
9
103
41
3
4
49
1.42
24240--24291
2
25.0
2
88
7
77
46
1
1
50
1.23
25155--25197
21
2.0
21
86
8
61
25
0
30
44
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25129--25194
14
4.7
14
75
7
62
22
1
27
48
1.59
25287--25339
2
26.5
2
83
7
63
43
1
3
50
1.30
25395--25459
14
4.6
14
72
11
53
26
1
27
44
1.63
25984--26211
2
115.0
2
67
20
106
45
3
2
47
1.35
25982--26039
29
2.0
29
83
6
73
48
3
1
46
1.29
26046--26089
15
3.1
15
80
12
56
40
4
4
50
1.43
26055--26089
13
2.7
13
90
0
52
42
5
2
48
1.41
25987--26206
46
4.7
47
68
22
126
45
4
2
47
1.36
25981--26168
82
2.3
79
77
13
188
45
4
3
47
1.38
27734--27957
77
3.0
74
84
6
306
43
3
6
46
1.46
27700--27947
38
6.5
38
77
9
202
41
4
7
46
1.50
27777--28000
39
5.8
38
77
9
113
41
3
7
47
1.49
28035--28082
21
2.2
21
81
3
60
18
2
0
79
0.84
28043--28082
17
2.4
16
84
15
55
20
2
0
77
0.88
28037--28074
14
3.1
12
88
11
51
15
2
0
81
0.80
32375--32417
19
2.4
18
85
11
61
81
4
13
0
0.84
32382--32425
19
2.3
19
84
7
54
81
9
9
0
0.87
34001--34074
34
2.2
34
90
0
112
41
22
12
22
1.87
34302--34380
37
2.2
37
93
4
135
31
21
10
36
1.87
34332--34570
65
3.5
66
74
14
209
28
20
12
38
1.88
34421--34513
36
2.6
36
87
3
134
31
19
10
38
1.86
34275--34618
137
2.5
137
91
1
548
29
21
11
38
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34441--34501
21
3.2
20
65
26
51
29
21
11
37
1.88
34451--34702
101
2.5
101
90
3
384
27
21
11
39
1.88
34530--34618
36
2.5
36
86
0
124
28
23
11
37
1.89
34637--34755
56
2.1
57
87
6
170
26
21
12
40
1.88
34675--34755
21
4.0
22
70
23
88
28
19
12
39
1.88
34697--34774
37
2.1
36
92
2
129
29
20
12
37
1.90
34760--34871
30
3.5
30
69
23
102
28
18
10
41
1.84
34723--34941
67
3.2
67
88
3
305
29
20
11
38
1.88
34928--34993
23
2.8
24
97
2
125
42
24
4
28
1.74
38770--38814
20
2.2
20
92
0
72
17
4
22
55
1.60
38818--38924
46
2.3
45
84
6
126
38
5
21
34
1.77
46075--46141
33
2.0
33
97
0
125
25
16
26
31
1.96
46201--46245
20
2.2
20
84
0
63
17
4
20
57
1.56
46249--46344
46
2.1
45
94
1
165
36
8
25
30
1.85
47516--47840
38
8.7
37
75
12
215
44
4
7
44
1.51
47517--47800
77
3.7
76
78
10
271
44
4
7
43
1.52
47772--47850
36
2.1
38
82
15
94
40
2
6
50
1.41
47843--47891
4
12.2
4
76
23
50
22
2
2
73
1.04
47843--47882
21
2.0
20
90
5
62
22
2
0
75
0.93
47843--47891
11
4.5
11
80
17
57
22
2
2
73
1.04
49031--49103
10
6.5
11
76
17
53
17
6
2
72
1.19
50497--50565
30
2.3
30
85
5
86
39
7
18
34
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51100--51148
24
2.0
24
92
0
80
28
12
14
44
1.81
51463--51690
40
5.8
40
97
0
415
22
15
27
33
1.95
54052--54110
32
1.9
29
86
10
82
30
22
18
28
1.97
56347--56412
19
3.5
19
72
0
60
54
9
16
19
1.68
56340--56422
38
2.2
38
82
0
103
49
10
19
20
1.78
57545--57579
5
7.0
5
87
12
54
80
0
0
20
0.72
57553--57584
15
2.1
15
94
0
55
78
3
0
18
0.89
60550--60893
68
5.1
68
92
0
537
35
20
13
30
1.91
62288--62328
21
2.0
21
85
0
55
80
2
7
9
0.99
62314--62358
18
2.5
19
79
17
51
73
6
2
17
1.15
63211--63255
3
14.3
3
86
9
63
66
0
0
33
0.92
63211--63255
13
3.5
13
90
3
74
66
0
0
33
0.92
63434--64866
134
10.7
133
83
4
1505
32
19
17
30
1.95
65500--66093
117
5.2
117
86
5
795
39
17
18
24
1.92
65500--66093
37
15.5
38
79
10
604
39
17
18
24
1.92

Tables:   1

The End!