genome.fa.s8410.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008410.1 Hibiscus syriacus cultivar Beakdansim tig00111181_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59205

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
312--399	24	3.7	24	75	3	79	22	13	17	46	1.83
17631--17853	54	4.1	54	88	2	340	27	19	19	33	1.96
17669--17875	108	1.9	108	85	2	263	29	18	19	31	1.96
17689--17901	108	2.0	108	79	1	230	31	18	17	31	1.94
17975--18040	2	33.0	2	100	0	132	50	0	0	50	1.00
20917--20965	18	2.7	18	96	0	89	26	18	36	18	1.94
20859--21122	112	2.3	114	84	7	331	29	15	28	26	1.96
21049--21122	22	3.5	22	90	3	116	29	13	28	28	1.94
21412--21731	54	5.9	54	89	0	478	27	18	20	33	1.96
21430--21765	162	2.1	162	85	0	465	28	18	20	32	1.96
21448--21804	162	2.2	162	83	1	401	29	17	20	32	1.95
30634--30673	21	1.9	21	89	0	62	25	40	25	10	1.86
36617--36663	22	2.1	23	88	4	69	44	4	0	51	1.21
36994--37056	13	4.6	13	72	16	56	55	4	0	39	1.21
36997--37058	9	6.5	10	71	23	53	54	4	0	40	1.22
37431--37492	31	2.0	31	93	0	106	43	4	14	37	1.67
39528--39843	128	2.5	127	82	2	348	29	11	16	42	1.84
47934--47965	4	8.0	4	92	0	55	25	3	25	46	1.67
50586--50678	48	2.0	46	91	4	150	49	9	10	30	1.70
54294--54335	20	2.2	20	86	4	59	33	2	2	61	1.21
54304--54345	20	2.2	20	87	8	61	30	4	2	61	1.29
56607--56757	57	2.7	55	81	13	155	33	24	7	34	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56623--56710	28	3.1	28	66	13	65	36	25	5	32	1.79
56922--56986	27	2.4	27	97	2	123	26	18	16	38	1.92
58385--58443	18	3.2	18	75	11	66	55	0	3	40	1.16
58364--58452	37	2.3	39	83	16	121	58	0	2	39	1.11
58367--58452	20	4.3	20	74	12	72	59	0	2	38	1.10
58378--58449	19	3.8	20	80	12	89	56	0	2	40	1.13
58367--58443	37	2.0	39	90	9	124	58	0	2	38	1.12

Tables:   1

The End!