Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008411.1 Hibiscus syriacus cultivar Beakdansim tig00111186_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84986

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2659--2705
19
2.5
19
89
6
69
34
12
6
46
1.67
3052--3136
11
7.2
11
74
22
75
32
36
2
28
1.70
3049--3153
36
2.9
36
94
1
176
31
36
3
28
1.75
3524--3568
18
2.2
22
85
14
62
80
6
13
0
0.91
3779--3812
16
2.1
16
100
0
68
11
17
0
70
1.16
6644--6694
20
2.6
20
90
3
77
33
13
5
47
1.67
7038--7139
11
8.7
11
74
22
84
33
36
1
28
1.69
7035--7139
36
2.9
36
92
1
176
32
36
2
28
1.72
9578--9676
10
10.3
9
77
12
81
16
27
27
29
1.97
9579--9676
19
5.1
19
78
14
78
15
27
27
29
1.96
9577--9676
29
3.4
30
83
9
118
17
27
27
29
1.97
9689--9750
5
11.8
5
77
16
63
19
51
22
6
1.69
9673--9755
22
3.9
22
96
3
152
19
46
24
9
1.79
9673--9755
43
1.9
43
95
4
150
19
46
24
9
1.79
16926--17024
10
10.3
9
75
12
72
16
26
27
30
1.96
16927--17024
19
5.1
19
76
14
69
15
26
27
30
1.96
16926--17024
29
3.4
29
82
8
112
16
26
27
30
1.96
17021--17100
5
14.8
5
77
14
70
18
50
22
8
1.74
17021--17105
22
3.9
22
96
0
161
18
47
23
10
1.80
32893--32932
20
2.0
20
100
0
80
65
0
25
10
1.24
33090--33191
36
2.9
36
95
1
179
27
3
38
30
1.75
33350--33400
20
2.6
20
90
3
77
35
15
5
43
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37400--37450
20
2.6
20
90
3
77
35
15
5
43
1.71
40405--40586
90
2.0
91
90
1
285
26
23
27
21
1.99
43423--43571
36
4.1
36
87
0
199
29
4
38
28
1.75
43466--43561
25
4.0
23
65
25
56
31
5
36
27
1.79
43916--43966
19
2.6
20
87
3
68
45
5
15
33
1.71
50195--50245
20
2.6
20
90
3
77
35
15
5
43
1.71
56301--56379
24
3.3
24
77
7
72
29
18
18
32
1.96
56344--56394
24
2.1
24
100
0
102
31
11
25
31
1.92
62114--62165
19
2.6
21
90
6
81
46
5
13
34
1.67
65506--65530
8
3.1
8
100
0
50
0
24
0
76
0.80
66201--66251
20
2.6
20
93
3
86
47
5
13
33
1.67
69592--69616
8
3.1
8
100
0
50
0
24
0
76
0.80
70287--70338
19
2.6
21
90
6
81
46
5
13
34
1.67
75127--75308
90
2.0
91
85
1
249
28
23
26
21
1.99
83307--83480
90
1.9
91
88
1
260
21
27
21
29
1.99

Tables:   1

The End!