genome.fa.s8412.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008412.1 Hibiscus syriacus cultivar Beakdansim tig00111187_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114035

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6827--7000	90	1.9	91	88	1	260	21	27	21	29	1.99
8130--8226	47	2.2	44	82	14	112	51	15	1	31	1.50
11985--12016	12	2.7	12	100	0	64	0	15	6	78	0.95
13239--13274	18	1.9	18	88	5	54	0	11	11	77	0.99
13253--13289	14	2.6	14	87	12	58	0	10	8	81	0.89
13258--13289	13	2.5	13	100	0	64	0	12	6	81	0.87
13239--13275	20	1.9	20	88	5	58	0	10	10	78	0.97
19677--19715	10	3.7	10	83	12	51	2	17	5	74	1.12
19678--19706	12	2.4	12	100	0	58	0	13	6	79	0.93
25497--25526	13	2.4	13	94	5	53	43	0	30	26	1.55
30928--31109	90	2.0	91	88	1	267	21	28	22	28	1.99
32152--32202	19	2.6	20	90	3	77	43	5	15	35	1.71
36325--36375	19	2.6	20	90	3	77	43	5	15	35	1.71
37290--37346	30	1.9	30	85	0	78	59	8	5	26	1.48
38409--38459	19	2.6	20	90	3	77	43	5	15	35	1.71
42566--42616	19	2.6	20	90	3	77	43	5	15	35	1.71
43977--44056	35	2.2	37	88	4	119	27	5	36	31	1.78
49656--49701	12	4.1	11	78	15	58	26	4	34	34	1.76
51317--51367	20	2.6	20	90	3	77	35	15	5	43	1.71
53660--53763	48	2.2	48	100	0	208	31	23	22	23	1.98
53667--53742	24	3.2	24	70	7	82	27	22	25	25	2.00
53683--53759	24	3.2	24	70	7	84	29	24	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55455--55504	19	2.6	19	84	12	66	36	16	6	42	1.72
55455--55502	20	2.5	19	89	3	69	35	14	6	43	1.71
57682--57785	48	2.2	48	100	0	208	31	23	22	23	1.98
57689--57764	24	3.2	24	70	7	82	27	22	25	25	2.00
57705--57781	24	3.2	24	70	7	84	29	24	20	24	1.99
59651--59755	36	2.9	36	92	1	176	29	36	5	28	1.80
60382--60415	16	2.1	16	100	0	68	11	17	0	70	1.16
63250--63300	20	2.6	20	90	3	77	33	13	5	47	1.67
63645--63729	11	7.2	11	72	22	66	31	36	3	28	1.74
63642--63746	36	2.9	36	95	1	185	30	36	4	28	1.78
64117--64162	19	2.3	19	85	11	56	80	6	13	0	0.89
64374--64407	16	2.1	16	100	0	68	11	17	0	70	1.16
67242--67292	20	2.6	20	90	3	77	33	13	5	47	1.67
67637--67738	11	8.7	11	74	22	84	33	36	1	28	1.69
67634--67738	36	2.9	36	92	1	176	32	36	2	28	1.72
70182--70280	10	10.3	9	77	12	81	16	27	27	29	1.97
70183--70280	19	5.1	19	78	14	78	15	27	27	29	1.96
70181--70280	29	3.4	30	83	9	118	17	27	27	29	1.97
70277--70334	5	10.8	5	78	14	62	18	51	22	6	1.70
70277--70339	22	2.9	22	100	0	126	19	47	23	9	1.78
70331--70368	7	5.4	7	90	0	58	18	26	26	28	1.98
77515--77613	10	10.3	9	75	12	72	16	26	27	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77516--77613	19	5.1	19	76	14	69	15	26	27	30	1.96
77515--77613	29	3.4	29	82	8	112	16	26	27	30	1.96
77610--77689	5	14.8	5	77	14	79	18	51	22	7	1.71
77608--77689	17	5.1	15	76	16	65	18	51	21	8	1.73
77610--77694	22	3.9	22	100	0	170	18	48	23	9	1.77
93450--93489	20	2.0	20	100	0	80	65	0	25	10	1.24
93647--93746	34	2.9	36	92	4	161	27	4	39	30	1.75
97952--97991	20	2.0	20	100	0	80	65	0	25	10	1.24
98138--98247	34	3.1	36	92	5	181	29	2	36	31	1.72
98146--98245	23	4.3	23	74	21	86	28	3	37	32	1.72
99789--99821	16	2.1	16	94	0	57	36	18	3	42	1.66
105138--105170	16	2.1	16	100	0	66	33	18	6	42	1.75
110150--110185	17	2.0	19	89	10	58	30	16	11	41	1.83
111163--111213	20	2.6	20	90	3	77	35	15	5	43	1.71

Tables:   1

The End!