genome.fa.s8414.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008414.1 Hibiscus syriacus cultivar Beakdansim tig00111192_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  209268

Tables:   1   

This is table  1  of  1  ( 93 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
253--299	23	2.0	25	83	8	62	48	14	2	34	1.56
3326--3465	69	2.0	69	100	0	280	29	7	20	42	1.79
13566--13601	18	2.1	18	89	5	56	2	11	8	77	1.08
22685--22759	36	2.0	37	89	5	116	25	13	26	34	1.93
25975--26039	31	2.1	31	100	0	130	67	13	3	15	1.35
26343--26370	14	2.0	14	100	0	56	57	0	0	42	0.99
26395--26505	49	2.2	50	82	1	134	45	6	5	43	1.52
26572--26649	9	8.7	9	70	16	54	50	8	1	39	1.42
26536--26666	34	4.1	33	72	14	105	47	6	2	44	1.40
26579--26720	20	7.0	20	79	11	123	46	6	3	43	1.46
26766--26796	14	2.2	14	100	0	62	48	0	0	51	1.00
26854--27034	5	36.2	5	100	0	362	59	0	0	40	0.97
27174--27224	19	2.6	19	81	3	57	35	33	13	17	1.89
27229--27372	21	7.0	21	76	3	114	19	20	21	38	1.94
27234--27331	41	2.4	41	94	0	169	20	20	22	36	1.95
28362--28386	13	1.9	13	100	0	50	24	8	44	24	1.80
30533--30572	19	2.1	19	100	0	80	47	17	5	30	1.69
34506--34548	21	2.0	21	82	8	52	58	6	0	34	1.25
37115--37156	22	2.0	21	86	13	59	64	7	0	28	1.20
37359--37407	16	3.0	16	80	14	64	61	0	0	38	0.96
40874--40907	17	2.0	17	88	0	50	35	8	20	35	1.84
51918--51960	18	2.3	18	84	4	50	51	2	2	44	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59961--60001	19	2.2	19	83	16	50	31	0	14	53	1.41
71593--71675	23	3.7	23	90	4	127	21	22	20	34	1.96
72151--72193	19	2.2	20	80	12	54	72	0	4	23	1.04
72323--72350	14	2.0	14	100	0	56	28	28	7	35	1.84
72804--72982	64	2.7	64	84	10	209	55	15	0	27	1.44
74634--74708	27	2.7	27	79	8	71	66	1	9	22	1.28
74663--74708	14	3.2	15	78	9	51	69	2	8	19	1.25
76632--76663	16	2.0	16	100	0	64	18	12	37	31	1.88
77707--77748	18	2.3	18	100	0	84	16	35	16	30	1.92
86706--86744	19	2.0	19	90	5	60	66	10	2	20	1.33
87121--87145	6	4.2	6	100	0	50	16	32	36	16	1.90
100971--101019	22	2.2	23	88	3	73	40	8	0	51	1.32
102795--102825	2	15.5	2	100	0	62	48	0	0	51	1.00
103381--103436	30	2.0	27	82	10	67	42	28	12	16	1.84
106611--106653	18	2.4	18	96	0	77	18	48	20	11	1.79
107958--107992	18	1.9	18	88	0	52	54	0	17	28	1.43
111775--111810	13	2.8	13	91	0	63	16	50	19	13	1.79
111771--111838	32	2.2	31	89	2	100	17	48	19	14	1.81
113132--113167	18	2.0	18	88	0	54	52	0	16	30	1.44
117621--117667	24	1.9	24	86	4	67	42	19	10	27	1.84
125098--125143	21	2.2	21	92	0	74	30	13	41	15	1.85
130261--130354	45	2.1	45	86	4	127	37	8	3	51	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
138418--138486	36	1.9	36	90	0	111	52	11	2	33	1.53
140066--140231	86	1.9	86	86	2	235	22	17	16	43	1.87
143045--143082	19	2.0	19	100	0	76	31	15	26	26	1.96
143814--143839	13	2.0	13	100	0	52	61	15	0	23	1.33
146232--146282	26	2.0	26	84	7	68	37	3	3	54	1.37
154700--154726	2	13.5	2	100	0	54	48	0	0	51	1.00
154725--154804	39	2.1	39	90	0	106	42	7	7	42	1.61
154745--154826	39	2.1	39	84	6	105	42	10	9	36	1.73
159523--159555	15	2.1	16	88	5	50	9	24	15	51	1.72
160303--160334	16	2.0	16	100	0	64	37	25	6	31	1.81
166647--166679	14	2.4	14	94	0	57	15	12	18	54	1.71
166843--166877	10	3.5	10	88	0	52	17	8	8	65	1.44
166849--166934	24	3.6	24	75	9	77	15	13	16	54	1.71
166915--166949	14	2.5	14	90	0	61	5	17	22	54	1.64
167829--167872	17	2.7	16	86	13	63	56	0	0	43	0.99
167832--167866	15	2.3	15	95	5	61	57	0	0	42	0.99
167832--167872	16	2.5	16	88	4	55	58	0	0	41	0.98
174390--174567	19	8.7	19	74	13	140	22	19	22	35	1.95
174390--174499	42	2.7	42	91	2	179	20	20	23	35	1.96
174422--174564	61	2.3	61	93	0	241	22	18	22	36	1.95
174535--174573	19	2.1	19	85	0	51	25	20	20	33	1.97
180047--180081	18	1.9	18	88	0	52	28	17	0	54	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
183789--183866	38	2.1	38	85	0	102	35	14	8	41	1.77
184001--184030	15	2.0	15	93	0	51	46	3	0	50	1.18
184472--184515	19	2.3	18	88	7	61	52	2	0	45	1.13
184905--184950	17	2.5	18	86	10	58	63	4	0	32	1.14
184905--184956	17	2.7	19	80	19	56	63	3	0	32	1.12
185295--185345	25	2.0	25	88	0	75	35	9	9	45	1.71
186524--186578	25	2.2	25	90	0	83	63	10	3	21	1.42
187016--187062	21	2.3	21	85	3	60	25	0	4	70	1.05
187062--187139	24	3.3	24	94	5	133	48	0	0	51	1.00
188867--188913	23	2.0	23	84	8	60	27	2	0	70	0.99
191011--191070	23	2.6	23	78	0	66	41	8	11	38	1.72
190923--191157	87	2.7	87	92	1	402	42	11	13	31	1.80
191098--191180	23	3.6	23	91	0	121	40	8	18	32	1.80
191011--191264	110	2.3	110	89	0	373	44	10	12	33	1.76
191130--191362	87	2.7	87	88	0	358	44	10	12	32	1.77
191217--191264	23	2.1	23	88	0	69	45	10	10	33	1.72
190954--191354	197	2.0	197	92	0	667	44	11	12	31	1.78
191307--191354	23	2.1	23	84	0	60	39	10	18	31	1.85
191924--192366	200	2.2	198	89	2	656	30	14	14	39	1.86
192467--192552	30	2.9	30	80	13	81	47	1	1	50	1.16
192770--192810	21	2.0	21	90	0	64	43	17	0	39	1.49
197881--197951	15	4.6	14	74	19	61	28	36	0	35	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
197881--197951	33	2.3	30	85	7	88	28	36	0	35	1.58
200573--200646	32	2.3	32	92	0	121	28	20	13	37	1.90
200871--200960	24	3.8	24	78	0	99	58	16	13	11	1.62
201057--201098	17	2.6	16	85	10	59	30	2	21	45	1.65
208138--208169	4	8.0	4	92	0	55	75	0	3	21	0.95

Tables:   1

The End!