Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008416.1 Hibiscus syriacus cultivar Beakdansim tig00111194_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66523

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12600--12682
36
2.3
36
93
0
139
36
4
24
34
1.77
18503--18560
20
2.9
20
89
0
89
37
5
27
29
1.78
19431--19528
3
32.0
3
73
20
71
64
0
0
35
0.94
19433--19537
17
6.2
17
77
17
85
64
0
0
35
0.94
19613--19664
14
3.8
13
78
12
50
57
0
0
42
0.98
21950--22045
17
5.8
16
75
12
77
34
2
2
61
1.19
21955--21995
18
2.4
18
88
8
59
31
0
2
65
1.05
21965--22029
22
3.2
21
75
12
55
36
1
1
60
1.16
27526--27663
37
3.7
37
85
0
159
42
10
11
35
1.75
28026--28058
17
1.9
17
93
0
57
24
3
0
72
0.98
28080--28127
23
2.0
24
84
11
64
27
2
0
70
0.98
28037--28231
100
1.9
100
79
14
215
27
4
2
65
1.23
28351--28403
19
2.7
20
77
11
56
33
1
0
64
1.05
28357--28403
19
2.5
19
82
0
58
34
2
0
63
1.06
28376--28432
24
2.4
24
78
21
66
26
1
0
71
0.95
29575--29609
3
11.7
3
93
0
61
28
0
0
71
0.86
35110--35176
22
3.0
22
100
0
134
26
26
26
19
1.99
35468--35539
29
2.5
29
90
0
108
38
12
11
37
1.79
35856--35995
70
2.0
70
86
5
194
18
30
24
26
1.98
35975--36017
21
2.0
21
86
0
59
16
25
27
30
1.97
42044--42110
22
3.0
22
100
0
134
26
26
26
19
1.99
42402--42473
29
2.5
29
90
0
108
38
12
11
37
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42778--42928
68
2.3
67
87
4
207
18
27
27
26
1.98
42908--42950
21
2.0
21
86
0
59
16
25
27
30
1.97
56038--56064
2
13.5
2
100
0
54
48
0
0
51
1.00

Tables:   1

The End!