Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008418.1 Hibiscus syriacus cultivar Beakdansim tig00111198_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 855397
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 4 of 4
Found at i:699589 original size:14 final size:14
Alignment explanation
Indices: 699570--699599 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
699560 AGAACTCAAT
699570 CTTCTTCCATTTGA
1 CTTCTTCCATTTGA
*
699584 CTTCTTTCATTTGA
1 CTTCTTCCATTTGA
699598 CT
1 CT
699600 AAATTGTCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.13, C:0.27, G:0.07, T:0.53
Consensus pattern (14 bp):
CTTCTTCCATTTGA
Found at i:710432 original size:23 final size:23
Alignment explanation
Indices: 710406--710457 Score: 86
Period size: 23 Copynumber: 2.3 Consensus size: 23
710396 ACATAGGTTC
710406 GGGTTCTAGGTTCACTATATCCT
1 GGGTTCTAGGTTCACTATATCCT
* *
710429 GGGTTATAGGTTCACTATATGCT
1 GGGTTCTAGGTTCACTATATCCT
710452 GGGTTC
1 GGGTTC
710458 AGCAAAAGGT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.17, C:0.17, G:0.27, T:0.38
Consensus pattern (23 bp):
GGGTTCTAGGTTCACTATATCCT
Found at i:711230 original size:46 final size:46
Alignment explanation
Indices: 711171--711289 Score: 175
Period size: 46 Copynumber: 2.6 Consensus size: 46
711161 GGCACCTTAT
* * * * *
711171 ATGCCGTTCATACACCGTTATGTATTTTCATTTATGGCATCCTTTC
1 ATGCCGATAATACACCATTATGCATTTTCATTTATGGCAACCTTTC
* *
711217 ATGCCGATAATACATCATCATGCATTTTCATTTATGGCAACCTTTC
1 ATGCCGATAATACACCATTATGCATTTTCATTTATGGCAACCTTTC
711263 ATGCCGATAATACACCATTATGCATTT
1 ATGCCGATAATACACCATTATGCATTT
711290 AACTTGCATT
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 64 1.00
ACGTcount: A:0.26, C:0.24, G:0.12, T:0.39
Consensus pattern (46 bp):
ATGCCGATAATACACCATTATGCATTTTCATTTATGGCAACCTTTC
Found at i:711503 original size:31 final size:31
Alignment explanation
Indices: 711465--711541 Score: 91
Period size: 32 Copynumber: 2.5 Consensus size: 31
711455 TAACTCGAGC
* * *
711465 CTTGGGTAGGCTCTGCGACCCCGAGATTTTT
1 CTTGGGTAGGCTCTACGACCCCGAGAATTAT
* * *
711496 CTTGGGTAGGCCTCTATGGCCTCGAGAATTAT
1 CTTGGGTAGG-CTCTACGACCCCGAGAATTAT
711528 CTTGGGTAGGCTCT
1 CTTGGGTAGGCTCT
711542 CAGGCCCCAA
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
31 14 0.36
32 25 0.64
ACGTcount: A:0.14, C:0.23, G:0.30, T:0.32
Consensus pattern (31 bp):
CTTGGGTAGGCTCTACGACCCCGAGAATTAT
Found at i:718529 original size:19 final size:20
Alignment explanation
Indices: 718495--718535 Score: 66
Period size: 19 Copynumber: 2.1 Consensus size: 20
718485 TCATACAAGA
*
718495 ATTTAGCATAATAAGTCAAC
1 ATTTAGCATAACAAGTCAAC
718515 ATTTA-CATAACAAGTCAAC
1 ATTTAGCATAACAAGTCAAC
718534 AT
1 AT
718536 AAACACAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 15 0.75
20 5 0.25
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.29
Consensus pattern (20 bp):
ATTTAGCATAACAAGTCAAC
Found at i:719103 original size:27 final size:27
Alignment explanation
Indices: 719065--719129 Score: 121
Period size: 27 Copynumber: 2.4 Consensus size: 27
719055 TATTTTTACC
*
719065 TCAATGATCATACCATAATGTCATGCT
1 TCAATGCTCATACCATAATGTCATGCT
719092 TCAATGCTCATACCATAATGTCATGCT
1 TCAATGCTCATACCATAATGTCATGCT
719119 TCAATGCTCAT
1 TCAATGCTCAT
719130 TCAATGCACC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.31, C:0.25, G:0.11, T:0.34
Consensus pattern (27 bp):
TCAATGCTCATACCATAATGTCATGCT
Found at i:727077 original size:12 final size:12
Alignment explanation
Indices: 727060--727087 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
727050 ATGAACTGCC
727060 TTTTATTTTTTA
1 TTTTATTTTTTA
727072 TTTTATTTTTTA
1 TTTTATTTTTTA
727084 TTTT
1 TTTT
727088 GAAAGAGGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (12 bp):
TTTTATTTTTTA
Found at i:727623 original size:26 final size:26
Alignment explanation
Indices: 727551--727634 Score: 105
Period size: 26 Copynumber: 3.2 Consensus size: 26
727541 ATGATTGGTA
*
727551 GATTGGTGAATTCATTAACCATAAGT
1 GATTGGTGAATTCATTAACCATAAAT
* * *
727577 GATTTATGTGAATTCAATAACGATAAAT
1 GA-TT-GGTGAATTCATTAACCATAAAT
*
727605 GATTGGTGAATTCATTAACCTTAAAT
1 GATTGGTGAATTCATTAACCATAAAT
727631 GATT
1 GATT
727635 TGTGCAGTGT
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
26 24 0.50
27 4 0.08
28 20 0.42
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.37
Consensus pattern (26 bp):
GATTGGTGAATTCATTAACCATAAAT
Found at i:727710 original size:62 final size:62
Alignment explanation
Indices: 727613--727742 Score: 224
Period size: 62 Copynumber: 2.1 Consensus size: 62
727603 ATGATTGGTG
** *
727613 AATTCATTAACCTTAAATGATTTGTGCAGTGTCAAGATAATTTTATTTGCCTAATAATTATT
1 AATTCATTAACCAAAAATGATTTGTGCAGTGTCAAGATAACTTTATTTGCCTAATAATTATT
*
727675 AATTCATTAACCAAAAATGATTTGTGTAGTGTCAAGATAACTTTATTTGCCTAATAATTATT
1 AATTCATTAACCAAAAATGATTTGTGCAGTGTCAAGATAACTTTATTTGCCTAATAATTATT
727737 AATTCA
1 AATTCA
727743 GTGAATATAT
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 64 1.00
ACGTcount: A:0.36, C:0.12, G:0.11, T:0.42
Consensus pattern (62 bp):
AATTCATTAACCAAAAATGATTTGTGCAGTGTCAAGATAACTTTATTTGCCTAATAATTATT
Found at i:727919 original size:20 final size:20
Alignment explanation
Indices: 727891--728023 Score: 184
Period size: 20 Copynumber: 6.8 Consensus size: 20
727881 TTGATTCACG
*
727891 GAATATAAGATTACCAGTGA
1 GAATGTAAGATTACCAGTGA
727911 GAATGTAAGATTACCAGTGA
1 GAATGTAAGATTACCAGTGA
*
727931 GAATGTAAGATTACCAGTGG
1 GAATGTAAGATTACCAGTGA
*
727951 GAATGTAAGATTACCAGTGT
1 GAATGTAAGATTACCAGTGA
*
727971 GAATGTAAGATTACCA-AG-
1 GAATGTAAGATTACCAGTGA
* *
727989 GAA--TAAGATTATCAGTGG
1 GAATGTAAGATTACCAGTGA
728007 GAATGTAAGATTACCAG
1 GAATGTAAGATTACCAG
728024 GAAATAGGAT
Statistics
Matches: 102, Mismatches: 7, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
16 10 0.10
17 1 0.01
18 6 0.06
19 1 0.01
20 84 0.82
ACGTcount: A:0.40, C:0.10, G:0.25, T:0.26
Consensus pattern (20 bp):
GAATGTAAGATTACCAGTGA
Found at i:728005 original size:36 final size:36
Alignment explanation
Indices: 727916--728036 Score: 145
Period size: 36 Copynumber: 3.2 Consensus size: 36
727906 AGTGAGAATG
*
727916 TAAGATTACCAGTGAGAATGTAAGATTACCAGTGGGAA
1 TAAGATTACCAGTGAGAATGTAAGATTACCA--AGGAA
*
727954 TGTAAGATTACCAGTGTGAATGTAAGATTACCAAGGAA
1 --TAAGATTACCAGTGAGAATGTAAGATTACCAAGGAA
* *
727992 TAAGATTATCAGTGGGAATGTAAGATTACC-AGGAAA
1 TAAGATTACCAGTGAGAATGTAAGATTACCAAGG-AA
*
728028 TAGGATTAC
1 TAAGATTAC
728037 TGAGAATGTT
Statistics
Matches: 74, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
35 3 0.04
36 37 0.50
38 4 0.05
40 30 0.41
ACGTcount: A:0.40, C:0.10, G:0.25, T:0.26
Consensus pattern (36 bp):
TAAGATTACCAGTGAGAATGTAAGATTACCAAGGAA
Found at i:736340 original size:23 final size:23
Alignment explanation
Indices: 736314--736363 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
736304 TTTCTAACAA
736314 TTGATATCAA-TTTTCAAAATGTT
1 TTGATATCAATTTTTCAAAAT-TT
* * *
736337 TTGATTTTAATTTTTTAAAATTT
1 TTGATATCAATTTTTCAAAATTT
736360 TTGA
1 TTGA
736364 CCTAAATTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 14 0.61
24 9 0.39
ACGTcount: A:0.32, C:0.04, G:0.08, T:0.56
Consensus pattern (23 bp):
TTGATATCAATTTTTCAAAATTT
Found at i:739345 original size:20 final size:20
Alignment explanation
Indices: 739320--739362 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
739310 TCTAAGAGCC
*
739320 CATTTAGGACAATTTAGATG
1 CATTTAGGACAATATAGATG
* *
739340 CATTTAGGAGAATATAGTTG
1 CATTTAGGACAATATAGATG
739360 CAT
1 CAT
739363 GTGGTGGATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (20 bp):
CATTTAGGACAATATAGATG
Found at i:742401 original size:20 final size:20
Alignment explanation
Indices: 742376--742418 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
742366 TCTAAGAGCC
*
742376 CATTTAGGACCATTTAGATG
1 CATTTAGGACCATATAGATG
* *
742396 CATTTAGGAGCATATAGTTG
1 CATTTAGGACCATATAGATG
742416 CAT
1 CAT
742419 GTGGTGGATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (20 bp):
CATTTAGGACCATATAGATG
Found at i:754569 original size:810 final size:810
Alignment explanation
Indices: 753003--754613 Score: 3010
Period size: 810 Copynumber: 2.0 Consensus size: 810
752993 GCTGTCCCAA
753003 ATTTTACGCATGCTCTGCCCGAGATACCCACCGCAGCATTTTGGCACTTCAACCACCGGTTCTAT
1 ATTTTACGCATGCTCTGCCCGAGATACCCACCGCAGCATTTTGGCACTTCAACCACCGGTTCTAT
* *
753068 TGATGACGTTGCCTAGTCTGACCCTGCAGATCCTGTCGGTCCTAGGGTGCCTGTAGCGGGATTAT
66 TGATGACGTTGCCTAGTCTGACCCTGCAGATCCTATCGGTCCTAGGGCGCCTGTAGCGGGATTAT
*
753133 GTCGGTCTCTAGCCAGCTACCTAGGTTGTATCATTGCCTAGTCTGCTCGACTCCCAAGTAACTCA
131 GCCGGTCTCTAGCCAGCTACCTAGGTTGTATCATTGCCTAGTCTGCTCGACTCCCAAGTAACTCA
*
753198 ACCATGGTTTTGGGGTTTCCTAGGGTGGTTAGCACCAAACCTTAGGATTTCTTTTCCCCTATAAA
196 ACCATGGTTTTGGGGTTTCCTAGGGTGGTTAACACCAAACCTTAGGATTTCTTTTCCCCTATAAA
753263 TAGAGGAGGAAGCCATATTGAAGAGGACTTTAGTTCCAGCCACATTTGATCTTAAAAAGTTAGAG
261 TAGAGGAGGAAGCCATATTGAAGAGGACTTTAGTTCCAGCCACATTTGATCTTAAAAAGTTAGAG
*
753328 AGAGAAAGTCTCATCTTTCTCCGTCAATCCCACTTGCCGTGGCATTTCTCCTTGACTAGCAGAAG
326 AGAGAAAGTCTCATCTTTCTCCATCAATCCCACTTGCCGTGGCATTTCTCCTTGACTAGCAGAAG
*
753393 CGAGTGGCGTTCTGACCATCCGAGAGGAGCTAGTCCGCTGGGAGTAGTCCTTGGTGGCCAAGGAA
391 CGAGTGGCGTTCTGACCATCCGAGAGGAGCTAGTCCACTGGGAGTAGTCCTTGGTGGCCAAGGAA
753458 GGCATTTGGCAGTGCACGTCGAAGGCTTTCTCTCCTCCCCTTAGTCCTTGCTTTTATATTTTGTT
456 GGCATTTGGCAGTGCACGTCGAAGGCTTTCTCTCCTCCCCTTAGTCCTTGCTTTTATATTTTGTT
753523 GTTGGGTTGTAAGGAACGAATGAATCTTGCTTTGTGCTTGTTGATTTCGAGCCCCACCATGAACT
521 GTTGGGTTGTAAGGAACGAATGAATCTTGCTTTGTGCTTGTTGATTTCGAGCCCCACCATGAACT
753588 AATCCTATTTGGTGGGAGTTCGCATGGTTATTTAAGTTGTTATTTTAATGAATGGTTGTTGTTTC
586 AATCCTATTTGGTGGGAGTTCGCATGGTTATTTAAGTTGTTATTTTAATGAATGGTTGTTGTTTC
753653 ATGCTCTATTCTGTTTTGTTTATGATGCTTAAAGTCTTGAGGTTGTAGGAGCTACGAGAGTAGCC
651 ATGCTCTATTCTGTTTTGTTTATGATGCTTAAAGTCTTGAGGTTGTAGGAGCTACGAGAGTAGCC
*
753718 TTTCCTTAGGAGGGTTCATGAGGTTCGAGAGAATGCCTTGGCAATTTATCTTTAGTCTTAAAGAG
716 TTTCCTTAGGAGGGTTCATGAGGTTCGAGAGAATACCTTGGCAATTTATCTTTAGTCTTAAAGAG
753783 AAGCTAGGGAGGAACTACATATTGTCCCGG
781 AAGCTAGGGAGGAACTACATATTGTCCCGG
* * *
753813 ATTTTACGCATGCTCTGCCCGTGATACCCACCGCAGCATTTTGGCGCTTCAACCACCGGTTCTGT
1 ATTTTACGCATGCTCTGCCCGAGATACCCACCGCAGCATTTTGGCACTTCAACCACCGGTTCTAT
*
753878 TGATGACGTTGCCTAGTCTGACCTTGCAGATCCTATCGGTCCTAGGGCGCCTGTAGCGGGATTAT
66 TGATGACGTTGCCTAGTCTGACCCTGCAGATCCTATCGGTCCTAGGGCGCCTGTAGCGGGATTAT
*
753943 GCCGGTCTCTAGCCAGCTACCTAGGTTGTATCATTGCCTAGTCTGGTCGACTCCCAAGTAACTCA
131 GCCGGTCTCTAGCCAGCTACCTAGGTTGTATCATTGCCTAGTCTGCTCGACTCCCAAGTAACTCA
754008 ACCATGGTTTTGGGGTTTCCTAGGGTGGTTAACACCAAACCTTAGGATTTCTTTTCCCCTATAAA
196 ACCATGGTTTTGGGGTTTCCTAGGGTGGTTAACACCAAACCTTAGGATTTCTTTTCCCCTATAAA
*
754073 TAGAGGAGGAAGCCATATTGAAGAGGACTTTAGTTCCAGCCATATTTGATCTTAAAAAGTTAGAG
261 TAGAGGAGGAAGCCATATTGAAGAGGACTTTAGTTCCAGCCACATTTGATCTTAAAAAGTTAGAG
*
754138 AGAGAAAGTCTCATCTTTCTCTATCAATCCCACTTGCCGTGGCATTTCTCCTTGACTAGCAGAAT
326 AGAGAAAGTCTCATCTTTCTCCATCAATCCCACTTGCCGTGGCATTTCTCCTTGACTAGCAGAA-
* *
754203 G-GAGTGGCGTTCTGAGCATCCGAGAGGAGCTAGTCCACTGGGAGTAGTCCTTGGTGGCCGAGGA
390 GCGAGTGGCGTTCTGACCATCCGAGAGGAGCTAGTCCACTGGGAGTAGTCCTTGGTGGCCAAGGA
754267 AGGCATTTGGCAGTGCACGTCGAAGGCTTTCTCTCCTCCCCTTAGTCCTTGCTTTTATATTTTGT
455 AGGCATTTGGCAGTGCACGTCGAAGGCTTTCTCTCCTCCCCTTAGTCCTTGCTTTTATATTTTGT
* *
754332 TGTTGGGTTGTAAGGAACGAATGAATTTTGCTTTGTGCTTGTTGATTTCTAGCCCCACCATGAAC
520 TGTTGGGTTGTAAGGAACGAATGAATCTTGCTTTGTGCTTGTTGATTTCGAGCCCCACCATGAAC
754397 TAATCCTATTTGGTGGGAGTTCGCATGGTTATTTAAGTTGTTATTTTAATGAATGGTTGTTGTTT
585 TAATCCTATTTGGTGGGAGTTCGCATGGTTATTTAAGTTGTTATTTTAATGAATGGTTGTTGTTT
754462 CATGCTCTATTCTGTTTTGTTTATGATGCTTAAAGTCTTGAGGTTGTAGGAGCTACGAGAGTAGC
650 CATGCTCTATTCTGTTTTGTTTATGATGCTTAAAGTCTTGAGGTTGTAGGAGCTACGAGAGTAGC
**
754527 CTTT-CTATAGGAGGGTTCATGAGGTTCGAGAGAATACCTTGGCAATTTATCTTTAGTCTTCGAG
715 CTTTCCT-TAGGAGGGTTCATGAGGTTCGAGAGAATACCTTGGCAATTTATCTTTAGTCTTAAAG
754591 AGAAGCTAGGGAGGAACTACATA
779 AGAAGCTAGGGAGGAACTACATA
754614 AACAACGGGT
Statistics
Matches: 779, Mismatches: 20, Indels: 4
0.97 0.02 0.00
Matches are distributed among these distances:
809 2 0.00
810 776 1.00
811 1 0.00
ACGTcount: A:0.22, C:0.21, G:0.25, T:0.33
Consensus pattern (810 bp):
ATTTTACGCATGCTCTGCCCGAGATACCCACCGCAGCATTTTGGCACTTCAACCACCGGTTCTAT
TGATGACGTTGCCTAGTCTGACCCTGCAGATCCTATCGGTCCTAGGGCGCCTGTAGCGGGATTAT
GCCGGTCTCTAGCCAGCTACCTAGGTTGTATCATTGCCTAGTCTGCTCGACTCCCAAGTAACTCA
ACCATGGTTTTGGGGTTTCCTAGGGTGGTTAACACCAAACCTTAGGATTTCTTTTCCCCTATAAA
TAGAGGAGGAAGCCATATTGAAGAGGACTTTAGTTCCAGCCACATTTGATCTTAAAAAGTTAGAG
AGAGAAAGTCTCATCTTTCTCCATCAATCCCACTTGCCGTGGCATTTCTCCTTGACTAGCAGAAG
CGAGTGGCGTTCTGACCATCCGAGAGGAGCTAGTCCACTGGGAGTAGTCCTTGGTGGCCAAGGAA
GGCATTTGGCAGTGCACGTCGAAGGCTTTCTCTCCTCCCCTTAGTCCTTGCTTTTATATTTTGTT
GTTGGGTTGTAAGGAACGAATGAATCTTGCTTTGTGCTTGTTGATTTCGAGCCCCACCATGAACT
AATCCTATTTGGTGGGAGTTCGCATGGTTATTTAAGTTGTTATTTTAATGAATGGTTGTTGTTTC
ATGCTCTATTCTGTTTTGTTTATGATGCTTAAAGTCTTGAGGTTGTAGGAGCTACGAGAGTAGCC
TTTCCTTAGGAGGGTTCATGAGGTTCGAGAGAATACCTTGGCAATTTATCTTTAGTCTTAAAGAG
AAGCTAGGGAGGAACTACATATTGTCCCGG
Found at i:760421 original size:42 final size:41
Alignment explanation
Indices: 760359--760458 Score: 112
Period size: 42 Copynumber: 2.4 Consensus size: 41
760349 GAGTAAGTCA
* * ** *
760359 TTCGGGCCATCAATAAGTCTTTCAAGCCTA-ATTATCAAATCC
1 TTCGGGTCATCTATAAGTCTTTCAAG-AAAGATGAT-AAATCC
* *
760401 TTCGGGTCATCTATATGTCTTTCAAGAAAGATGATAAGTCC
1 TTCGGGTCATCTATAAGTCTTTCAAGAAAGATGATAAATCC
760442 TTCGGGTCATCTATAAG
1 TTCGGGTCATCTATAAG
760459 ACCTTCGGGC
Statistics
Matches: 49, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
41 22 0.45
42 27 0.55
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (41 bp):
TTCGGGTCATCTATAAGTCTTTCAAGAAAGATGATAAATCC
Found at i:761527 original size:17 final size:16
Alignment explanation
Indices: 761498--761532 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
761488 CCTTTTTATT
*
761498 ATTTTAAATATAAACC
1 ATTTTAAACATAAACC
761514 ATTTATAAACATAAACC
1 ATTT-TAAACATAAACC
761531 AT
1 AT
761533 GTCCATAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 4 0.24
17 13 0.76
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.34
Consensus pattern (16 bp):
ATTTTAAACATAAACC
Found at i:762983 original size:15 final size:14
Alignment explanation
Indices: 762963--763004 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
762953 TCTTTTATTT
762963 ATTTCATTGATTTAA
1 ATTTCATT-ATTTAA
*
762978 ATTTCAATAATTTAA
1 ATTTC-ATTATTTAA
762993 ATTT-ATTATTTA
1 ATTTCATTATTTA
763005 TATTAATGTC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 7 0.29
15 15 0.62
16 2 0.08
ACGTcount: A:0.38, C:0.05, G:0.02, T:0.55
Consensus pattern (14 bp):
ATTTCATTATTTAA
Found at i:768932 original size:21 final size:21
Alignment explanation
Indices: 768888--768932 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
768878 GATTTTTGGG
* * *
768888 CAAGGGGAATCGGTACCCATT
1 CAAGGGGAACCGATACCCACT
*
768909 CAAGGGGAACCGATACCCCCT
1 CAAGGGGAACCGATACCCACT
768930 CAA
1 CAA
768933 ACGAACCAGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.31, C:0.31, G:0.24, T:0.13
Consensus pattern (21 bp):
CAAGGGGAACCGATACCCACT
Found at i:770634 original size:103 final size:103
Alignment explanation
Indices: 770455--770672 Score: 409
Period size: 103 Copynumber: 2.1 Consensus size: 103
770445 GTCGAGGGTC
*
770455 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTATGAAGTCTAGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTATGAAGTCTAGTGAGACAAATAC
770520 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
* *
770558 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACAAATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTATGAAGTCTAGTGAGACAAATAC
770623 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
770661 TATGTGGTCCTT
1 TATGTGGTCCTT
770673 ATGAACATTA
Statistics
Matches: 112, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
103 112 1.00
ACGTcount: A:0.28, C:0.13, G:0.22, T:0.37
Consensus pattern (103 bp):
TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTATGAAGTCTAGTGAGACAAATAC
TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
Found at i:770748 original size:23 final size:23
Alignment explanation
Indices: 770688--770740 Score: 88
Period size: 23 Copynumber: 2.3 Consensus size: 23
770678 CATTATTATA
770688 TGGCACTACGGTGCAATTCTACG
1 TGGCACTACGGTGCAATTCTACG
* *
770711 CGGCACTACGGTGCAATTCTATG
1 TGGCACTACGGTGCAATTCTACG
770734 TGGCACT
1 TGGCACT
770741 TTGGTGCATT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.21, C:0.26, G:0.26, T:0.26
Consensus pattern (23 bp):
TGGCACTACGGTGCAATTCTACG
Found at i:774059 original size:23 final size:22
Alignment explanation
Indices: 774017--774059 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
774007 TGTCAAGGGA
*
774017 GAACCGATACCCCCACAGGAGG
1 GAACCGATACCCCCAAAGGAGG
*
774039 GAACCGATTCCCCCTAAAGGA
1 GAACCGATACCCCC-AAAGGA
774060 AAATTGTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.33, C:0.35, G:0.23, T:0.09
Consensus pattern (22 bp):
GAACCGATACCCCCAAAGGAGG
Found at i:775758 original size:103 final size:103
Alignment explanation
Indices: 775533--775750 Score: 400
Period size: 103 Copynumber: 2.1 Consensus size: 103
775523 GTCGAGGGTC
*
775533 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTATGAAGTCTAGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGCATGAAGTCTAGTGAGACACATAC
*
775598 TTGATCTCTAGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
* *
775636 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGCGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGCATGAAGTCTAGTGAGACACATAC
775701 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
775739 TATGTGGTCCTT
1 TATGTGGTCCTT
775751 ATGGACATTA
Statistics
Matches: 111, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
103 111 1.00
ACGTcount: A:0.27, C:0.14, G:0.22, T:0.37
Consensus pattern (103 bp):
TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGCATGAAGTCTAGTGAGACACATAC
TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
Found at i:775823 original size:23 final size:23
Alignment explanation
Indices: 775766--775826 Score: 86
Period size: 23 Copynumber: 2.7 Consensus size: 23
775756 CATTATTATA
*
775766 TGGCACTACAGTGCAATTCTACG
1 TGGCACTACGGTGCAATTCTACG
* *
775789 CGGCACTACGGTGCAATTCTATG
1 TGGCACTACGGTGCAATTCTACG
*
775812 TGGCACTTCGGTGCA
1 TGGCACTACGGTGCA
775827 TTTATATGAG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.21, C:0.26, G:0.26, T:0.26
Consensus pattern (23 bp):
TGGCACTACGGTGCAATTCTACG
Found at i:775834 original size:23 final size:23
Alignment explanation
Indices: 775757--775834 Score: 75
Period size: 23 Copynumber: 3.3 Consensus size: 23
775747 CCTTATGGAC
* *
775757 ATTATTATATGGCACTACAGTGCA
1 ATTA-TATGTGGCACTACGGTGCA
* * *
775781 ATTCTACGCGGCACTACGGTGCA
1 ATTATATGTGGCACTACGGTGCA
* *
775804 ATTCTATGTGGCACTTCGGTGCA
1 ATTATATGTGGCACTACGGTGCA
*
775827 TTTATATG
1 ATTATATG
775835 AGCTGTGGTG
Statistics
Matches: 44, Mismatches: 10, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
23 41 0.93
24 3 0.07
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.33
Consensus pattern (23 bp):
ATTATATGTGGCACTACGGTGCA
Found at i:777864 original size:60 final size:60
Alignment explanation
Indices: 777800--777912 Score: 156
Period size: 60 Copynumber: 1.9 Consensus size: 60
777790 GTCTCCCGAT
*
777800 TATAGGGTATTACATTATTAAGTCAT-TCGACTATTAAAAGTTATAAAATGGTCCTCTCAC
1 TATAGAGTATTACATTATTAAGTC-TCTCGACTATTAAAAGTTATAAAATGGTCCTCTCAC
* *** *
777860 TATAGAGTGTTGTTTTGTTAAGTCTCTCGACTATTAAAAGTTATAAAATGGTC
1 TATAGAGTATTACATTATTAAGTCTCTCGACTATTAAAAGTTATAAAATGGTC
777913 ACCCGACTAT
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
59 1 0.02
60 45 0.98
ACGTcount: A:0.33, C:0.12, G:0.16, T:0.39
Consensus pattern (60 bp):
TATAGAGTATTACATTATTAAGTCTCTCGACTATTAAAAGTTATAAAATGGTCCTCTCAC
Found at i:779825 original size:21 final size:22
Alignment explanation
Indices: 779784--779827 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
779774 CTATATACGT
* *
779784 TAAAAAAATAAAATTATATTTG
1 TAAAAAAATAAAATAAAATTTG
779806 TAAAAAAATAAAA-AAAATTTG
1 TAAAAAAATAAAATAAAATTTG
779827 T
1 T
779828 TTAGTTTTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.32
Consensus pattern (22 bp):
TAAAAAAATAAAATAAAATTTG
Found at i:781425 original size:20 final size:21
Alignment explanation
Indices: 781389--781430 Score: 52
Period size: 20 Copynumber: 2.0 Consensus size: 21
781379 TAATAAATAT
781389 TATTTTTTTATGAGATT-TGA
1 TATTTTTTTATGAGATTATGA
*
781409 TATTTTTATT-TGTGATTATGA
1 TATTTTT-TTATGAGATTATGA
781430 T
1 T
781431 TTTACCATGA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.24, C:0.00, G:0.14, T:0.62
Consensus pattern (21 bp):
TATTTTTTTATGAGATTATGA
Found at i:781609 original size:35 final size:35
Alignment explanation
Indices: 781570--781639 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
781560 TAAATCAATA
781570 TTAACATTTGTAGTATAAAATTTATTGAAAGCTCT
1 TTAACATTTGTAGTATAAAATTTATTGAAAGCTCT
781605 TTAACATTTGTAGTATAAAATTTATTGAAAGCTCT
1 TTAACATTTGTAGTATAAAATTTATTGAAAGCTCT
781640 AGAAGAGCTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.37, C:0.09, G:0.11, T:0.43
Consensus pattern (35 bp):
TTAACATTTGTAGTATAAAATTTATTGAAAGCTCT
Found at i:787500 original size:17 final size:18
Alignment explanation
Indices: 787480--787520 Score: 50
Period size: 16 Copynumber: 2.4 Consensus size: 18
787470 TAAAAATGGT
*
787480 AAAAACATAAA-GTAAAG
1 AAAAACATAAATGAAAAG
*
787497 -AAAATATAAATGAAAAG
1 AAAAACATAAATGAAAAG
787514 AAAAACA
1 AAAAACA
787521 ACTTTAATTA
Statistics
Matches: 19, Mismatches: 3, Indels: 3
0.76 0.12 0.12
Matches are distributed among these distances:
16 9 0.47
17 5 0.26
18 5 0.26
ACGTcount: A:0.73, C:0.05, G:0.10, T:0.12
Consensus pattern (18 bp):
AAAAACATAAATGAAAAG
Found at i:799042 original size:92 final size:93
Alignment explanation
Indices: 798857--799039 Score: 246
Period size: 91 Copynumber: 2.0 Consensus size: 93
798847 ATTTTTCTTA
* * *
798857 AAGTTATTTTAAAAGACATTTTTTATGTATTCGAACTACCAACCCCAAAGGTCGTTGACGACTCT
1 AAGTTATTTTAAAAGACATTTTTTAGGTATTCGAACTACCAACCCCAAAGGTCGATGACGACTCC
* * *
798922 AAATTTTAAATTAAACAAAAATTTAAAT
66 AAACTTTAAATAAAACAAAAATTAAAAT
* *
798950 AAGTTATTTTAAAAGACA-TTTTTAGGTATTCGAGCTACCTAA-CCCAAA-GTCGATGGCGACTC
1 AAGTTATTTTAAAAGACATTTTTTAGGTATTCGAACTACC-AACCCCAAAGGTCGATGACGACTC
**
799012 CAAACTTTAAATAAAATGAAAATTAAAA
65 CAAACTTTAAATAAAACAAAAATTAAAA
799040 ATATTTCAAA
Statistics
Matches: 79, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
91 34 0.43
92 25 0.32
93 20 0.25
ACGTcount: A:0.42, C:0.15, G:0.11, T:0.32
Consensus pattern (93 bp):
AAGTTATTTTAAAAGACATTTTTTAGGTATTCGAACTACCAACCCCAAAGGTCGATGACGACTCC
AAACTTTAAATAAAACAAAAATTAAAAT
Found at i:803028 original size:23 final size:23
Alignment explanation
Indices: 802985--803028 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
802975 GTGTTACAGT
*
802985 ATTGTTTTGAAATATCTATTTGA
1 ATTGTTTTGAAATATCGATTTGA
*
803008 ATTGTTTTAGAATTAT-GATTT
1 ATTGTTTT-GAAATATCGATTT
803029 TATATTCTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 12 0.67
24 6 0.33
ACGTcount: A:0.30, C:0.02, G:0.14, T:0.55
Consensus pattern (23 bp):
ATTGTTTTGAAATATCGATTTGA
Found at i:805638 original size:19 final size:19
Alignment explanation
Indices: 805599--805636 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
805589 ATCATGAATA
*
805599 TAAAAGGAAAAATTTAATT
1 TAAAAGGAAAAATATAATT
805618 TAAAAGGAAAAA-ATAATT
1 TAAAAGGAAAAATATAATT
805636 T
1 T
805637 TAGAACGTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.61, C:0.00, G:0.11, T:0.29
Consensus pattern (19 bp):
TAAAAGGAAAAATATAATT
Found at i:811131 original size:975 final size:973
Alignment explanation
Indices: 808122--815888 Score: 15000
Period size: 972 Copynumber: 8.0 Consensus size: 973
808112 AATCAATAAA
808122 TAAATAGATCATGAATGTAAAGGGAAAAGTTAATTAAAAAATAGAATGTTAACTGAAAAAATTAA
1 TAAATAGATCATGAATGTAAAGGGAAAAGTTAATTAAAAAATAGAATGTTAACTGAAAAAATTAA
808187 ATTAAATTAGAGTTAAATTAAAAAGAATCTAAGTTAAATAATGAAAAAGAGAAAGAGAAAGAAAT
66 ATTAAATTAGAGTTAAATTAAAAAGAATCTAAGTTAAATAATGAAAAAGAGAAAGAGAAAGAAAT
808252 TTAAATAAAGTAAAAAAATAAAATGAAAAGTTACACCCATTTAAAAAATGAAAATTAAATAATAT
131 TTAAATAAAGTAAAAAAATAAAATGAAAAGTTACACCCATTTAAAAAATGAAAATTAAATAATAT
808317 ATATATATACACATTTAATAATAAACTAATAGTTTAAAAAAGAAAAGAAAAGGTAAAGTGTTAAT
196 ATATATATACACATTTAATAATAAACTAATAGTTTAAAAAAGAAAAGAAAAGGTAAAGTGTTAAT
808382 GAATTAAATCAAAAGTGAAAAGTTAAATTAAAATAAATTAAAATAAAATTATGAACGATAGGACT
261 GAATTAAATCAAAAGTGAAAAGTTAAATTAAAATAAATTAAAATAAAATTATGAACGATAGGACT
808447 TAAATAAATTATCTCCTATCCGTTTAAAGAGCACAGATTCTCTAGGGGATCTGGATCGAGTCATC
326 TAAATAAATTATCTCCTATCCGTTTAAAGAGCACAGATTCTCTAGGGGATCTGGATCGAGTCATC
808512 GGGTCATTTAATCAAAGATAAAATCTCAAAAAACAATTAAAATTGAATGAAAATAATAAATAAAA
391 GGGTCATTTAATCAAAGATAAAATCTCAAAAAACAATTAAAATTGAATGAAAATAATAAATAAAA
808577 TAAAGAGAAAAGAAATTCGTTCAAGATCCACAATCAACTTTCATAAAAAAACCTCAAGGAATGAT
456 TAAAGAGAAAAGAAATTCGTTCAAGATCCACAATCAACTTTCATAAAAAAACCTCAAGGAATGAT
808642 AAATCTATAAAGATTTATCTCAAAGTCTTTTCTCCTTATTCTTTGGTTTTCTCTAGTCCCACGAA
521 AAATCTATAAAGATTTATCTCAAAGTCTTTTCTCCTTATTCTTTGGTTTTCTCTAGTCCCACGAA
808707 ATTTTTAAATAGAATCAAGGTCATGATTGACCGAAACAACAAAAATAAAATAAAAATAAAGAAGA
586 ATTTTTAAATAGAATCAAGGTCATGATTGACCGAAACAACAAAAATAAAATAAAAATAAAGAAGA
808772 TTGTCAGTTTTCAATGACAAACCTCAAGAAATGCTAAATCTATGAAGATTAATTCAAAAAGCTTT
651 TTGTCAGTTTTCAATGACAAACCTCAAGAAATGCTAAATCTATGAAGATTAATTCAAAAAGCTTT
*
808837 CTTCCTTGTTCCCGGGTTTTTTCTCCTAAAATAAAGTTTTTTAAGAAAAGAAAAAGAAAACGAAA
716 CTTCCTTGTTCCTGGGTTTTTTCTCCTAAAATAAAGTTTTTTAAGAAAAGAAAAAGAAAACGAAA
808902 ACCAAAGACAAGACCAAATTGGACAAAGAAATAAG-AAAAAAAAGAATTATATCAATCAAAAGAT
781 ACCAAAGACAAGACCAAATTGGACAAAGAAATAAGAAAAAAAAAGAATTATATCAATCAAAAGAT
808966 TTTATTTTATTGCTCTAATATTTTAGGTTCCAACCCTTTTTTTTACAAAATAAGAATGTCTATTT
846 TTTATTTTATTGCTCTAATATTTTAGGTTCCAACCCTTTTTTTTACAAAATAAGAATGTCTATTT
*
809031 ATAAGCCCCCAACAACCCTAAAAGCAAAAAAAACTAACATCTTTTTGTTAATTCTAGATATAC
911 ATAAGCCCCCAACAACCCTAAAAGCAAAAAAAACTAACATCTTTTTGTTAATGCTAGATATAC
*
809094 TAAATAGATCATGAATGTAAAGGGAAAAGTTAATTAAAAAATAGAATGTTAACTAAAAAAATTAA
1 TAAATAGATCATGAATGTAAAGGGAAAAGTTAATTAAAAAATAGAATGTTAACTGAAAAAATTAA
*
809159 ATTAAATTAGAGTTAAATTAAAAAGAATATAAGTTAAATAATGAAAAAGAGAAAGAGAAAGAAAT
66 ATTAAATTAGAGTTAAATTAAAAAGAATCTAAGTTAAATAATGAAAAAGAGAAAGAGAAAGAAAT
809224 TTAAATAAAGTAAAAAAATAAAATGAAAAGTTACACCCATTTAAAAAATGAAAATTAAATAATAT
131 TTAAATAAAGTAAAAAAATAAAATGAAAAGTTACACCCATTTAAAAAATGAAAATTAAATAATAT
809289 ATATATATACACATTTAATAATAAACTAATAGTTTAAAAAAGAAAAGAAAAGGTAAAGTGTTAAT
196 ATATATATACACATTTAATAATAAACTAATAGTTTAAAAAAGAAAAGAAAAGGTAAAGTGTTAAT
809354 GAATTAAATCAAAAGTGAAAAGTTAAATTAAAATAAATTAAAATAAAATTATGAACGATAGGACT
261 GAATTAAATCAAAAGTGAAAAGTTAAATTAAAATAAATTAAAATAAAATTATGAACGATAGGACT
809419 TAAATAAATTATCTCCTATCCGTTTAAAGAGCACAGATTCTCTAGGGGATCTGGATCGAGTCATC
326 TAAATAAATTATCTCCTATCCGTTTAAAGAGCACAGATTCTCTAGGGGATCTGGATCGAGTCATC
809484 GGGTCATTTAATCAAAGATAAAATCTCAAAAAACAATTAAAATTGAATGAAAATAATAAATAAAA
391 GGGTCATTTAATCAAAGATAAAATCTCAAAAAACAATTAAAATTGAATGAAAATAATAAATAAAA
809549 TAAAGAGAAAAGAAATTCGTTCAAGATCCACAATCAACTTTCATAAAAAAACCTCAAGGAATGAT
456 TAAAGAGAAAAGAAATTCGTTCAAGATCCACAATCAACTTTCATAAAAAAACCTCAAGGAATGAT
809614 AAATCTATAAAGATTTATCTCAAAGTCTTTTCTCCTTATTCTTTGGTTTTCTCTAGTCCCACGAA
521 AAATCTATAAAGATTTATCTCAAAGTCTTTTCTCCTTATTCTTTGGTTTTCTCTAGTCCCACGAA
809679 ATTTTTAAATAGAATCAAGGTCATGATTGACCGAAACAACAAAAATAAAATAAAAATAAAGAAGA
586 ATTTTTAAATAGAATCAAGGTCATGATTGACCGAAACAACAAAAATAAAATAAAAATAAAGAAGA
*
809744 TTGTCTGTTTTCAATGACAAACCTCAAGAAATGCTAAATCTATGAAGATTAATTCAAAAAGCTTT
651 TTGTCAGTTTTCAATGACAAACCTCAAGAAATGCTAAATCTATGAAGATTAATTCAAAAAGCTTT
809809 CTTCCTTGTTCCTGGGTTTTTTCTCCTAAAATAAAGTTTTTTAAGAAAAGAAAAAGAAAACGAAA
716 CTTCCTTGTTCCTGGGTTTTTTCTCCTAAAATAAAGTTTTTTAAGAAAAGAAAAAGAAAACGAAA
809874 ACCAAAGACAAGACCAAATTGGACAAAGAAATAAGAAAAAAAAAGAATTATATCAATCAAAAGAT
781 ACCAAAGACAAGACCAAATTGGACAAAGAAATAAGAAAAAAAAAGAATTATATCAATCAAAAGAT
809939 TTTATTTTATTGCTCTAATATTTTAGGTTCCAACCCTTTTTTTTACAAAATAAGAATGTCTATTT
846 TTTATTTTATTGCTCTAATATTTTAGGTTCCAACCCTTTTTTTTACAAAATAAGAATGTCTATTT
*
810004 ATAAGCCCGCAACAACCCTAAAAGCAAAAAAAACTAACATCTTTTTGTTAATGCTAGATATAC
911 ATAAGCCCCCAACAACCCTAAAAGCAAAAAAAACTAACATCTTTTTGTTAATGCTAGATATAC
810067 TAAATAGATCATGAATGTAAAGGGAAAAGTTAATTAAAAAATAGAATGTTAACTGAAAAAATTAA
1 TAAATAGATCATGAATGTAAAGGGAAAAGTTAATTAAAAAATAGAATGTTAACTGAAAAAATTAA
810132 ATTAAATTAGAGTTAAATTAAAAAGAATCTAAGTTAAATAATGAAAAAGAGAAAGAGAAAGAAAT
66 ATTAAATTAGAGTTAAATTAAAAAGAATCTAAGTTAAATAATGAAAAAGAGAAAGAGAAAGAAAT
810197 TTAAATAAAGTAAAAAAATAAAATGAAAAGTTACACCCATTTAAAAAATGAAAATTAAATAATAT
131 TTAAATAAAGTAAAAAAATAAAATGAAAAGTTACACCCATTTAAAAAATGAAAATTAAATAATAT
810262 ATATATATACACATTTAATAATAAACTAATAGTTTAAAAAAGAAAAGAAAAGGTAAAGTGTTAAT
196 ATATATATACACATTTAATAATAAACTAATAGTTTAAAAAAGAAAAGAAAAGGTAAAGTGTTAAT
*
810327 GAATTAAATCAAAAGTGAAAAGTTAAATTAAAATAAATTAAAATAAAATTATGAACGATGGGACT
261 GAATTAAATCAAAAGTGAAAAGTTAAATTAAAATAAATTAAAATAAAATTATGAACGATAGGACT
*
810392 TAAATAAATTATCTCCTATCCATTTAAAGAGCACAGATTCTCTAGGGGATCTGGATCGAGTCATC
326 TAAATAAATTATCTCCTATCCGTTTAAAGAGCACAGATTCTCTAGGGGATCTGGATCGAGTCATC
810457 GGGTCATTTAATCAAAGATAAAATCTCAAAAAACAATTAAAATTGAATGAAAATAATAAATAAAA
391 GGGTCATTTAATCAAAGATAAAATCTCAAAAAACAATTAAAATTGAATGAAAATAATAAATAAAA
810522 TAAAGAGAAAAGAAATTCGTTCAAGATCCACAATCAACTTTCATAAAAAAAAACCTCAAGGAATG
456 TAAAGAGAAAAGAAATTCGTTCAAGATCCACAATCAACTTTCAT--AAAAAAACCTCAAGGAATG
810587 ATAAATCTATAAAGATTTATCTCAAAGTCTTTTCTCCTTATTCTTTGGTTTTCTCTAGTCCCACG
519 ATAAATCTATAAAGATTTATCTCAAAGTCTTTTCTCCTTATTCTTTGGTTTTCTCTAGTCCCACG
810652 AAATTTTTAAATAGAATCAAGGTCATGATTGACCGAAACAACAAAAATAAAATAAAAATAAAGAA
584 AAATTTTTAAATAGAATCAAGGTCATGATTGACCGAAACAACAAAAATAAAATAAAAATAAAGAA
810717 GATTGTCAGTTTTCAATGACAAACCTCAAGAAATGCTAAATCTATGAAGATTAATTCAAAAAGCT
649 GATTGTCAGTTTTCAATGACAAACCTCAAGAAATGCTAAATCTATGAAGATTAATTCAAAAAGCT
810782 TTCTTCCTTGTTCCTGGGTTTTTTCTCCTAAAATAAAGTTTTTTAAGAAAAGAAAAAGAAAACGA
714 TTCTTCCTTGTTCCTGGGTTTTTTCTCCTAAAATAAAGTTTTTTAAGAAAAGAAAAAGAAAACGA
*
810847 AAACCAAAGACAAGACCAAATTGGACAAAGAAATAAG-AAAAAAAAGAATTATAACAATCAAAAG
779 AAACCAAAGACAAGACCAAATTGGACAAAGAAATAAGAAAAAAAAAGAATTATATCAATCAAAAG
810911 ATTTTATTTTATTGCTCTAATATTTTAGGTTCCAACCCTTTTTTTTACAAAATAAGAATGTCTAT
844 ATTTTATTTTATTGCTCTAATATTTTAGGTTCCAACCCTTTTTTTTACAAAATAAGAATGTCTAT
810976 TTATAAGCCCCCAACAACCCTAAAAGCAAAAAAAAACTAACATCTTTTTGTTAATGCTAGATATA
909 TTATAAGCCCCCAACAACCCTAAAAGC-AAAAAAAACTAACATCTTTTTGTTAATGCTAGATATA
811041 C
973 C
811042 TAAATAGATCATGAATGTAAAGGGAAAAGTTAATTAAAAAATAGAATGTTAACTGAAAAAATTAA
1 TAAATAGATCATGAATGTAAAGGGAAAAGTTAATTAAAAAATAGAATGTTAACTGAAAAAATTAA
811107 ATTAAATTAGAGTTAAATTAAAAAGAATCTAAGTTAAATAATGAAAAAGAGAAAGAGAAAGAAAT
66 ATTAAATTAGAGTTAAATTAAAAAGAATCTAAGTTAAATAATGAAAAAGAGAAAGAGAAAGAAAT
811172 TTAAATAAAGTAAAAAAATAAAATGAAAAGTTACACCCATTTAAAAAATGAAAATTAAATAATAT
131 TTAAATAAAGTAAAAAAATAAAATGAAAAGTTACACCCATTTAAAAAATGAAAATTAAATAATAT
811237 ATATATATACACATTTAATAATAAACTAATAGTTTAAAAAAGAAAAGAAAAGGTAAAGTGTTAAT
196 ATATATATACACATTTAATAATAAACTAATAGTTTAAAAAAGAAAAGAAAAGGTAAAGTGTTAAT
811302 GAATTAAATCAAAAGTGAAAAGTTAAATTAAAATAAATTAAAATAAAATTATGAACGATAGGACT
261 GAATTAAATCAAAAGTGAAAAGTTAAATTAAAATAAATTAAAATAAAATTATGAACGATAGGACT
*
811367 TAAATAAATTATCTCCTATCCGTTTAATGAGCACAGATTCTCTAGGGGATCTGGATCGAGTCATC
326 TAAATAAATTATCTCCTATCCGTTTAAAGAGCACAGATTCTCTAGGGGATCTGGATCGAGTCATC
811432 GGGTCATTTAATCAAAGATAAAATCTCAAAAAACAATTAAAATTGAATGAAAATAATAAATAAAA
391 GGGTCATTTAATCAAAGATAAAATCTCAAAAAACAATTAAAATTGAATGAAAATAATAAATAAAA
811497 TAAAGAGAAAAGAAATTCGTTCAAGATCCACAATCAACTTTCATAAAAAAACCTCAAGGAATGAT
456 TAAAGAGAAAAGAAATTCGTTCAAGATCCACAATCAACTTTCATAAAAAAACCTCAAGGAATGAT
*
811562 AAATCTATAAAGATTTATATCAAAGTCTTTTCTCCTTATTCTTTGGTTTTCTCTAGTCCCACGAA
521 AAATCTATAAAGATTTATCTCAAAGTCTTTTCTCCTTATTCTTTGGTTTTCTCTAGTCCCACGAA
811627 ATTTTTAAATAGAATCAAGGTCATGATTGACCGAAACAACAAAAATAAAATAAAAATAAAGAAGA
586 ATTTTTAAATAGAATCAAGGTCATGATTGACCGAAACAACAAAAATAAAATAAAAATAAAGAAGA
811692 TTGTCAGTTTTCAATGACAAACCTCAAGAAATGCTAAATCTATGAAGATTAATTCAAAAAGCTTT
651 TTGTCAGTTTTCAATGACAAACCTCAAGAAATGCTAAATCTATGAAGATTAATTCAAAAAGCTTT
811757 CTTCCTTGTTCCTGGGTTTTTTCTCCTAAAATAAAGTTTTTTAAGAAAAGAAAAAGAAAACGAAA
716 CTTCCTTGTTCCTGGGTTTTTTCTCCTAAAATAAAGTTTTTTAAGAAAAGAAAAAGAAAACGAAA
*
811822 ACCAAAGACAAGACCAAATTGGACAAAGAAATAAGAAAAAAAAAGAATTATATCAATCAATAGAT
781 ACCAAAGACAAGACCAAATTGGACAAAGAAATAAGAAAAAAAAAGAATTATATCAATCAAAAGAT
*
811887 TTTATTTTATTGCTCTAATATTTTAGGTTCCAACCC-TTTTTTTACAAAATAAGAATATCTATTT
846 TTTATTTTATTGCTCTAATATTTTAGGTTCCAACCCTTTTTTTTACAAAATAAGAATGTCTATTT
811951 ATAAGCCCCCAACAACCCTAAAAGCAAAAAAAACTAACATCTTTTTGTTAATGCTAGATATAC
911 ATAAGCCCCCAACAACCCTAAAAGCAAAAAAAACTAACATCTTTTTGTTAATGCTAGATATAC
812014 TAAATAGATCATGAATGTAAAGGGAAAAGTTAATTAAAAAATAGAATGTTAACTGAAAAAATTAA
1 TAAATAGATCATGAATGTAAAGGGAAAAGTTAATTAAAAAATAGAATGTTAACTGAAAAAATTAA
812079 ATTAAATTAGAGTTAAATTAAAAAGAATCTAAGTTAAATAATGAAAAAGAGAAAGAGAAAGAAAT
66 ATTAAATTAGAGTTAAATTAAAAAGAATCTAAGTTAAATAATGAAAAAGAGAAAGAGAAAGAAAT
812144 TTAAATAAAGTAAAAAAATAAAATGAAAAGTTACACCCATTTAAAAAATGAAAATTAAATAATAT
131 TTAAATAAAGTAAAAAAATAAAATGAAAAGTTACACCCATTTAAAAAATGAAAATTAAATAATAT
*
812209 ATATATATACACATTTAATAATAAACTAATAGTTTAAAAAAGAAAAGAGAAGGTAAAGTGTTAAT
196 ATATATATACACATTTAATAATAAACTAATAGTTTAAAAAAGAAAAGAAAAGGTAAAGTGTTAAT
812274 GAATTAAATCAAAAGTGAAAAGTTAAATTAAAATAAATTAAAATAAAATTATGAACGATAGGACT
261 GAATTAAATCAAAAGTGAAAAGTTAAATTAAAATAAATTAAAATAAAATTATGAACGATAGGACT
812339 TAAATAAATTATCTCCTATCCGTTTAAAGAGCACAGATTCTCTA-GGGATCTGGATCGAGTCATC
326 TAAATAAATTATCTCCTATCCGTTTAAAGAGCACAGATTCTCTAGGGGATCTGGATCGAGTCATC
*
812403 GGGTCATTTAATCAAAGATTAAATCTCAAAAAACAATTAAAATTGAATGAAAATAATAAATAAAA
391 GGGTCATTTAATCAAAGATAAAATCTCAAAAAACAATTAAAATTGAATGAAAATAATAAATAAAA
*
812468 TAAAGAGAAAAGAAATTCGTTCAAGATCCACAATCAACTTTCATAAAAAACCCTCAAGGAATGAT
456 TAAAGAGAAAAGAAATTCGTTCAAGATCCACAATCAACTTTCATAAAAAAACCTCAAGGAATGAT
812533 AAATCTATAAAGATTTATCTCAAAGTCTTTTCTCCTTATTCTTTGGTTTTCTCTAGTCCCACGAA
521 AAATCTATAAAGATTTATCTCAAAGTCTTTTCTCCTTATTCTTTGGTTTTCTCTAGTCCCACGAA
812598 ATTTTTAAATAGAATCAAGGTCATGATTGACCGAAACAACAAAAATAAAATAAAAATAAAGAAGA
586 ATTTTTAAATAGAATCAAGGTCATGATTGACCGAAACAACAAAAATAAAATAAAAATAAAGAAGA
812663 TTGTCAGTTTTCAATGACAAACCTCAAGAAATGCTAAATCTATGAAGATTAATTCAAAAAGCTTT
651 TTGTCAGTTTTCAATGACAAACCTCAAGAAATGCTAAATCTATGAAGATTAATTCAAAAAGCTTT
*
812728 CTTCCTTGTTCCTCGGTTTTTTCTCCTAAAATAAAGTTTTTTAAGAAAAGAAAAAGAAAACGAAA
716 CTTCCTTGTTCCTGGGTTTTTTCTCCTAAAATAAAGTTTTTTAAGAAAAGAAAAAGAAAACGAAA
812793 ACCAAAGACAAGACCAAATTGGACAAAGAAATAAGAAAAAAAAAGAATTATATCAATCAAAAGAT
781 ACCAAAGACAAGACCAAATTGGACAAAGAAATAAGAAAAAAAAAGAATTATATCAATCAAAAGAT
812858 TTTATTTTATTGCTCTAATATTTTAGGTTCCAACCCTTTTTTTTACAAAATAAGAATGTCTATTT
846 TTTATTTTATTGCTCTAATATTTTAGGTTCCAACCCTTTTTTTTACAAAATAAGAATGTCTATTT
812923 ATAAGCCCCCAACAACCCTAAAAGCAAAAAAAACTAACATCTTTTTGTTAATGCTAGATATAC
911 ATAAGCCCCCAACAACCCTAAAAGCAAAAAAAACTAACATCTTTTTGTTAATGCTAGATATAC
812986 TAAATAGATCATGAATGTAAAGGGAAAAGTTAATTAAAAAATAGAATGTTAACTGAAAAAATTAA
1 TAAATAGATCATGAATGTAAAGGGAAAAGTTAATTAAAAAATAGAATGTTAACTGAAAAAATTAA
813051 ATTAAATTAGAGTTAAATTAAAAAGAATCTAAGTTAAATAATGAAAAAGAGAAAGAGAAAGAAAT
66 ATTAAATTAGAGTTAAATTAAAAAGAATCTAAGTTAAATAATGAAAAAGAGAAAGAGAAAGAAAT
813116 TTAAATAAAGTAAAAAAATAAAATGAAAAGTTACACCCATTTAAAAAATG-AAATTAAAT-A-AT
131 TTAAATAAAGTAAAAAAATAAAATGAAAAGTTACACCCATTTAAAAAATGAAAATTAAATAATAT
813178 ATATATATACACATTTAATAATAAACTAATAGTTTAAAAAAGAAAAGAAAAGGTAAAGTGTTAAT
196 ATATATATACACATTTAATAATAAACTAATAGTTTAAAAAAGAAAAGAAAAGGTAAAGTGTTAAT
*
813243 GAATTAAATCAAAAGTGAAAAGTTAAATTAAAATAAATTAAAATAAAATTATGAACAATAGGACT
261 GAATTAAATCAAAAGTGAAAAGTTAAATTAAAATAAATTAAAATAAAATTATGAACGATAGGACT
813308 TAAATAAATTATCTCCTATCCGTTTAAAGAGCACAGATTCTCTAGGGGATCTGGATCGAGTCATC
326 TAAATAAATTATCTCCTATCCGTTTAAAGAGCACAGATTCTCTAGGGGATCTGGATCGAGTCATC
813373 GGGTCATTTAATCAAAGATAAAATCTCAAAAAACAATTAAAATTGAATG-AAATAAT-AATAAAA
391 GGGTCATTTAATCAAAGATAAAATCTCAAAAAACAATTAAAATTGAATGAAAATAATAAATAAAA
813436 TAAAGAGAAAAGAAATTCGTTCAAGATCCACAATCAACTTTCATAAAAAAAACCTCAAGGAATGA
456 TAAAGAGAAAAGAAATTCGTTCAAGATCCACAATCAACTTTCAT-AAAAAAACCTCAAGGAATGA
813501 TAAATCTATAAAGATTTATCTCAAAGTCTTTTCTCCTTATTCTTTGGTTTTCTCTAGTCCCACGA
520 TAAATCTATAAAGATTTATCTCAAAGTCTTTTCTCCTTATTCTTTGGTTTTCTCTAGTCCCACGA
813566 AATTTTTAAATAGAATCAAGGTCATGATTGACCGAAACAACAAAAATAAAAT-AAAATAAAGAAG
585 AATTTTTAAATAGAATCAAGGTCATGATTGACCGAAACAACAAAAATAAAATAAAAATAAAGAAG
813630 ATTGTCAGTTTTCAATGACAAACCTCAAGAAATGCTAAATCTATGAAGATTAATTCAAAAAGCTT
650 ATTGTCAGTTTTCAATGACAAACCTCAAGAAATGCTAAATCTATGAAGATTAATTCAAAAAGCTT
* *
813695 TCTTCTTTGTTCCTGGGTTTTTTCTCCAAAAATAAAGTTTTTTAAGAAAAGAAAAAGAAAACGAA
715 TCTTCCTTGTTCCTGGGTTTTTTCTCCTAAAATAAAGTTTTTTAAGAAAAGAAAAAGAAAACGAA
813760 AACCAAAGACAAGACCAAATTGGACAAAGAAATAAGAAAAAAAAAAGAATTATATCAATCAAAAG
780 AACCAAAGACAAGACCAAATTGGACAAAGAAATAAG-AAAAAAAAAGAATTATATCAATCAAAAG
813825 ATTTTATTTTATTGCTCTAATATTTTAGGTTCCAACCCTTTTTTTTACAAAATAAGAATGTCTAT
844 ATTTTATTTTATTGCTCTAATATTTTAGGTTCCAACCCTTTTTTTTACAAAATAAGAATGTCTAT
813890 TTATAAGCCCCCAACAACCCTAAAAGCAAAAAAAACTAACATCTTTTTGTTAATGCTAGATATAC
909 TTATAAGCCCCCAACAACCCTAAAAGCAAAAAAAACTAACATCTTTTTGTTAATGCTAGATATAC
813955 TAAATAGATCATGAATGTAAAGGGAAAAGTTAATTAAAAAATAGAATGTTAACTGAAAAAATTAA
1 TAAATAGATCATGAATGTAAAGGGAAAAGTTAATTAAAAAATAGAATGTTAACTGAAAAAATTAA
814020 ATTAAATTAGAGTTAAATTAAAAAGAATCTAAGTTAAATAATGAAAAAGAGAAAGAGAAAGAAAT
66 ATTAAATTAGAGTTAAATTAAAAAGAATCTAAGTTAAATAATGAAAAAGAGAAAGAGAAAGAAAT
814085 TTAAATAAAGTAAAAAAATAAAATGAAAAGTTACACCCATTTAAAAAATGAAAATTAAATAATAT
131 TTAAATAAAGTAAAAAAATAAAATGAAAAGTTACACCCATTTAAAAAATGAAAATTAAATAATAT
*
814150 ATATATATACACATTTAATAATAAACTAATAGTTT-AAAAAG-AAAGAGAAGGTAAAGTGTTAAT
196 ATATATATACACATTTAATAATAAACTAATAGTTTAAAAAAGAAAAGAAAAGGTAAAGTGTTAAT
814213 GAATTAAATC-AAAGTGAAAAGTTAAATTAAAATAAATTAAAATAAAATTATGAACGATAGGACT
261 GAATTAAATCAAAAGTGAAAAGTTAAATTAAAATAAATTAAAATAAAATTATGAACGATAGGACT
814277 TAAATAAATTATCTCCTATCCGTTTAAAGAGCACAGATTCTCTA-GGGATCTGGATCGAGTCATC
326 TAAATAAATTATCTCCTATCCGTTTAAAGAGCACAGATTCTCTAGGGGATCTGGATCGAGTCATC
814341 GGGTCATTTAATCAAAGATAAAATCTCAAAAAACAATTAAAATTGAATG-AAATAATAAAT-AAA
391 GGGTCATTTAATCAAAGATAAAATCTCAAAAAACAATTAAAATTGAATGAAAATAATAAATAAAA
*
814404 TAAAGAGAAAAGAAATTCGTTCAAGATCCACAATCAACTTTCATAAAAAACCCTCAAGGAATGAT
456 TAAAGAGAAAAGAAATTCGTTCAAGATCCACAATCAACTTTCATAAAAAAACCTCAAGGAATGAT
814469 AAATCTATAAAGATTTATCTC-AAGTCTTTTCTCCTTATTCTTTGGTTTTCTCTAGTCCCACGAA
521 AAATCTATAAAGATTTATCTCAAAGTCTTTTCTCCTTATTCTTTGGTTTTCTCTAGTCCCACGAA
814533 ATTTTTAAATAGAATCAAGGTCATGATTGACCGAAACAAC-AAAAT-AAATAAAAATAAAGAAGA
586 ATTTTTAAATAGAATCAAGGTCATGATTGACCGAAACAACAAAAATAAAATAAAAATAAAGAAGA
814596 TTGTCAGTTTTCAATGACAAACCTCAAGAAATGCTAAATCTATGAAGATTAATTCAAAAAGCTTT
651 TTGTCAGTTTTCAATGACAAACCTCAAGAAATGCTAAATCTATGAAGATTAATTCAAAAAGCTTT
*
814661 CTTCCTTGTTCCTCGGTTTTTTCTCCTAAAATAAAGTTTTTTAAGAAAAGAAAAAGAAAACGAAA
716 CTTCCTTGTTCCTGGGTTTTTTCTCCTAAAATAAAGTTTTTTAAGAAAAGAAAAAGAAAACGAAA
814726 ACCAAAGACAAGACCAAATTGGA-AAAGAAATAAGAAAAAAAAAGAATTATATCAATCAAAAGAT
781 ACCAAAGACAAGACCAAATTGGACAAAGAAATAAGAAAAAAAAAGAATTATATCAATCAAAAGAT
*
814790 TTTTTTTTATTGCTCTAATATTTTAGGTTCCAACCCTTTTTTTTACAAAATAAGAATGTCTATTT
846 TTTATTTTATTGCTCTAATATTTTAGGTTCCAACCCTTTTTTTTACAAAATAAGAATGTCTATTT
814855 ATAAGCCCCCAACAACCCTAAAAGCAAAAAAAAACTAACATCTTTTTGTTAATGCTAGATATAC
911 ATAAGCCCCCAACAACCCTAAAAGC-AAAAAAAACTAACATCTTTTTGTTAATGCTAGATATAC
814919 TAAATAGATCATGAATGTAAAGGGAAAAGTTAATT-AAAAATAGAATGTTAACTGAAAAAAATTA
1 TAAATAGATCATGAATGTAAAGGGAAAAGTTAATTAAAAAATAGAATGTTAACTG-AAAAAATTA
814983 AATTAAATTAGAGTTAAATTAAAAAGAATCTAAGTTAAATAATGAAAAAGAGAAAGAGAAAGAAA
65 AATTAAATTAGAGTTAAATTAAAAAGAATCTAAGTTAAATAATGAAAAAGAGAAAGAGAAAGAAA
815048 TTTAAATAAAGTAAAAAAATAAAATGAAAAGTTACACCCATTTAAAAAATGAAAATTAAATAATA
130 TTTAAATAAAGTAAAAAAATAAAATGAAAAGTTACACCCATTTAAAAAATGAAAATTAAATAATA
815113 TATATATATACACATTTAATAATAAACTAATAGTTTAAAAAAGAAAAGAAAAGGTAAAGTGTTAA
195 TATATATATACACATTTAATAATAAACTAATAGTTTAAAAAAGAAAAGAAAAGGTAAAGTGTTAA
*
815178 TGAATTAAATCAAAAGTGAAAAGTTAAATTAAAATAAATTAAAATAAAATTATGAACAATAGGAC
260 TGAATTAAATCAAAAGTGAAAAGTTAAATTAAAATAAATTAAAATAAAATTATGAACGATAGGAC
815243 TTAAATAAATTATCTCCTATCCGTTTAAAGAGCACAGATTCTCTAGGGGATCTGGATCGAGTCAT
325 TTAAATAAATTATCTCCTATCCGTTTAAAGAGCACAGATTCTCTAGGGGATCTGGATCGAGTCAT
815308 CGGGTCATTTAATCAAAGATAAAATCTCAAAAAACAATTAAAATTGAATGAAAATAATAAATAAA
390 CGGGTCATTTAATCAAAGATAAAATCTCAAAAAACAATTAAAATTGAATGAAAATAATAAATAAA
815373 ATAAAGAGAAAAGAAATTCGTTCAAGATCCACAATCAACTTTCATAAAAAAAAACCTCAAGGAAT
455 ATAAAGAGAAAAGAAATTCGTTCAAGATCCACAATCAACTTTCAT--AAAAAAACCTCAAGGAAT
815438 GATAAATCTATAAAGATTTATCTCAAAGTCTTTTCTCCTTATTCTTTGGTTTTCTCTAGTCCCAC
518 GATAAATCTATAAAGATTTATCTCAAAGTCTTTTCTCCTTATTCTTTGGTTTTCTCTAGTCCCAC
815503 GAAATTTTTAAATAGAATCAAGGTCATGATTGACCGAAACAACAAAAATAAAATAAAAATAAAGA
583 GAAATTTTTAAATAGAATCAAGGTCATGATTGACCGAAACAACAAAAATAAAATAAAAATAAAGA
815568 AGATTGTCAGTTTTCAATGACAAACCTCAAGAAATGCTAAATCTATGAAGATTAATTC-AAAAGC
648 AGATTGTCAGTTTTCAATGACAAACCTCAAGAAATGCTAAATCTATGAAGATTAATTCAAAAAGC
*
815632 TTTCTTCCTTGTTCCT-GGTTTTTTCTCCAAAAAT-AAGTTTTTT-----AAG-AAAAGAAAACG
713 TTTCTTCCTTGTTCCTGGGTTTTTTCTCCTAAAATAAAGTTTTTTAAGAAAAGAAAAAGAAAACG
815689 AAAACCAAAGACAAGACCAAATTGGACAAAGAAATAAGAAAAAAAAAGAATTATATCAATCAAAA
778 AAAACCAAAGACAAGACCAAATTGGACAAAGAAATAAGAAAAAAAAAGAATTATATCAATCAAAA
815754 GATTTTATTTTATTGCTCTAATATTTTAGGTTCCAACCCTTTTTTTTACAAAATAAGAATGTCTA
843 GATTTTATTTTATTGCTCTAATATTTTAGGTTCCAACCCTTTTTTTTACAAAATAAGAATGTCTA
815819 TTTATAAGCCCCCAACAACCCTAAAAGCAAAAAAAAACTAACATCTTTTTGTTAATGCTAGATAT
908 TTTATAAGCCCCCAACAACCCTAAAAGC-AAAAAAAACTAACATCTTTTTGTTAATGCTAGATAT
815884 AC
972 AC
815886 TAA
1 TAA
815889 TTAAAGAAAC
Statistics
Matches: 6720, Mismatches: 47, Indels: 61
0.98 0.01 0.01
Matches are distributed among these distances:
963 138 0.02
964 263 0.04
965 174 0.03
966 151 0.02
967 313 0.05
968 418 0.06
969 766 0.11
970 156 0.02
971 522 0.08
972 1573 0.23
973 1117 0.17
974 207 0.03
975 922 0.14
ACGTcount: A:0.48, C:0.12, G:0.12, T:0.29
Consensus pattern (973 bp):
TAAATAGATCATGAATGTAAAGGGAAAAGTTAATTAAAAAATAGAATGTTAACTGAAAAAATTAA
ATTAAATTAGAGTTAAATTAAAAAGAATCTAAGTTAAATAATGAAAAAGAGAAAGAGAAAGAAAT
TTAAATAAAGTAAAAAAATAAAATGAAAAGTTACACCCATTTAAAAAATGAAAATTAAATAATAT
ATATATATACACATTTAATAATAAACTAATAGTTTAAAAAAGAAAAGAAAAGGTAAAGTGTTAAT
GAATTAAATCAAAAGTGAAAAGTTAAATTAAAATAAATTAAAATAAAATTATGAACGATAGGACT
TAAATAAATTATCTCCTATCCGTTTAAAGAGCACAGATTCTCTAGGGGATCTGGATCGAGTCATC
GGGTCATTTAATCAAAGATAAAATCTCAAAAAACAATTAAAATTGAATGAAAATAATAAATAAAA
TAAAGAGAAAAGAAATTCGTTCAAGATCCACAATCAACTTTCATAAAAAAACCTCAAGGAATGAT
AAATCTATAAAGATTTATCTCAAAGTCTTTTCTCCTTATTCTTTGGTTTTCTCTAGTCCCACGAA
ATTTTTAAATAGAATCAAGGTCATGATTGACCGAAACAACAAAAATAAAATAAAAATAAAGAAGA
TTGTCAGTTTTCAATGACAAACCTCAAGAAATGCTAAATCTATGAAGATTAATTCAAAAAGCTTT
CTTCCTTGTTCCTGGGTTTTTTCTCCTAAAATAAAGTTTTTTAAGAAAAGAAAAAGAAAACGAAA
ACCAAAGACAAGACCAAATTGGACAAAGAAATAAGAAAAAAAAAGAATTATATCAATCAAAAGAT
TTTATTTTATTGCTCTAATATTTTAGGTTCCAACCCTTTTTTTTACAAAATAAGAATGTCTATTT
ATAAGCCCCCAACAACCCTAAAAGCAAAAAAAACTAACATCTTTTTGTTAATGCTAGATATAC
Found at i:820327 original size:3 final size:3
Alignment explanation
Indices: 820319--820385 Score: 116
Period size: 3 Copynumber: 22.3 Consensus size: 3
820309 ATATTAATTG
*
820319 ATT ATT ATT ATT ATT ATA ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
820367 ATT ATC ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT A
820386 AATATATTAA
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 60 1.00
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:821821 original size:13 final size:13
Alignment explanation
Indices: 821805--821844 Score: 55
Period size: 12 Copynumber: 3.1 Consensus size: 13
821795 ATATAATAAA
821805 TAAATATTTATTT
1 TAAATATTTATTT
*
821818 TAAATAAATTATTT
1 TAAAT-ATTTATTT
821832 T-AATATTTATTT
1 TAAATATTTATTT
821844 T
1 T
821845 TCAATATCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
12 8 0.33
13 8 0.33
14 8 0.33
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TAAATATTTATTT
Found at i:822539 original size:28 final size:27
Alignment explanation
Indices: 822475--822541 Score: 71
Period size: 28 Copynumber: 2.4 Consensus size: 27
822465 TAATTTTTAA
* *
822475 TTTTTTTCTTTTCAAAATTTTTATATT
1 TTTTTTTATTTTCAAAATATTTATATT
* * *
822502 TACTTATTATTTTCATAATATTTATATGT
1 T-TTTTTTATTTTCAAAATATTTATAT-T
822531 TTTTTTTATTT
1 TTTTTTTATTT
822542 GCAATTATTT
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
27 1 0.03
28 28 0.90
29 2 0.06
ACGTcount: A:0.24, C:0.06, G:0.01, T:0.69
Consensus pattern (27 bp):
TTTTTTTATTTTCAAAATATTTATATT
Found at i:822562 original size:12 final size:14
Alignment explanation
Indices: 822535--822567 Score: 52
Period size: 12 Copynumber: 2.5 Consensus size: 14
822525 ATATGTTTTT
822535 TTTATTTGCAATTA
1 TTTATTTGCAATTA
822549 TTTATTT-C-ATTA
1 TTTATTTGCAATTA
822561 TTTATTT
1 TTTATTT
822568 TGTCAGAGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 11 0.58
13 1 0.05
14 7 0.37
ACGTcount: A:0.24, C:0.06, G:0.03, T:0.67
Consensus pattern (14 bp):
TTTATTTGCAATTA
Found at i:833134 original size:8 final size:8
Alignment explanation
Indices: 833118--833166 Score: 59
Period size: 8 Copynumber: 6.5 Consensus size: 8
833108 ATGCTTGAAG
833118 AAAAAA-A
1 AAAAAAGA
*
833125 AAAGAA-A
1 AAAAAAGA
833132 AAAAAAGA
1 AAAAAAGA
833140 AAAAAAGA
1 AAAAAAGA
*
833148 AAAAGAG-
1 AAAAAAGA
833155 AAAAAAGA
1 AAAAAAGA
833163 AAAA
1 AAAA
833167 GGGGGGTCAA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
7 17 0.47
8 19 0.53
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (8 bp):
AAAAAAGA
Found at i:833167 original size:15 final size:14
Alignment explanation
Indices: 833115--833167 Score: 70
Period size: 15 Copynumber: 3.6 Consensus size: 14
833105 ATTATGCTTG
*
833115 AAGAAAAAAAAAAGA
1 AAGAAAAAGAAAA-A
*
833130 AAAAAAAAGAAAAA
1 AAGAAAAAGAAAAA
833144 AAGAAAAAGAGAAAA
1 AAGAAAAAGA-AAAA
833159 AAGAAAAAG
1 AAGAAAAAG
833168 GGGGGTCAAG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
14 10 0.29
15 24 0.71
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (14 bp):
AAGAAAAAGAAAAA
Found at i:834415 original size:83 final size:83
Alignment explanation
Indices: 834276--834628 Score: 629
Period size: 83 Copynumber: 4.3 Consensus size: 83
834266 AACATTAACT
834276 GGAAGATGAATTTGC-CAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGC
1 GGAAGATGAATTTGCTC-ATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGC
834340 AGAACCAATCATTGAATTG
65 AGAACCAATCATTGAATTG
*
834359 GGAAGATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCA
1 GGAAGATGAATTTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCA
834424 GAACCAATCATTGAATTG
66 GAACCAATCATTGAATTG
*
834442 GGAAGATGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGG-TTGGAC
1 GGAAGATGAATTTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGG-C
*
834506 AGAACCAATCATTGAATTT
65 AGAACCAATCATTGAATTG
*
834525 GGAAGATGAATTTGCTAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCA
1 GGAAGATGAATTTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCA
*
834590 GAACCAATCATTGAATTT
66 GAACCAATCATTGAATTG
834608 GGAAGATGAATTTGCTCATAG
1 GGAAGATGAATTTGCTCATAG
834629 TAGAAATAAG
Statistics
Matches: 262, Mismatches: 5, Indels: 6
0.96 0.02 0.02
Matches are distributed among these distances:
82 4 0.02
83 253 0.97
84 5 0.02
ACGTcount: A:0.27, C:0.14, G:0.24, T:0.35
Consensus pattern (83 bp):
GGAAGATGAATTTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGCA
GAACCAATCATTGAATTG
Found at i:835639 original size:114 final size:114
Alignment explanation
Indices: 835442--836049 Score: 904
Period size: 113 Copynumber: 5.4 Consensus size: 114
835432 TCCAGAAAAG
*
835442 GTTCATAATGAGAAGAAC-TCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTC
1 GTTCATAATGAGAAGAACGTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTC
* * * * * * * * *
835506 AACCTTTTACCTGAATTCATCAAATTGATGGATTATCTTTTCTAGAGAAG-
66 AACCTTTTGCTTGAATTCATC-ATTTGATGGATCAACATTGCCAG-GTAGA
*
835556 GTTCATAATGAGAAGAAC-TCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTC
1 GTTCATAATGAGAAGAACGTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTC
*
835620 AATCTTTTGCTTGAATTCATCATTTGATGGATCAACATTGCCAGGTAGA
66 AACCTTTTGCTTGAATTCATCATTTGATGGATCAACATTGCCAGGTAGA
*
835669 GTTCATAATGAGAAGAAC-TCATCTGAAGAAGGAAGAAAAAGTTCATAATGAGAAGAACTTGTTC
1 GTTCATAATGAGAAGAACGTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTC
835733 AACCTTTTGCTTGAATTCATCATTTGATGGATCAACATTGCCAGGTAGA
66 AACCTTTTGCTTGAATTCATCATTTGATGGATCAACATTGCCAGGTAGA
*
835782 GTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGAATAAGTTCATAATGAGAAGAACTTGT
1 GTTCATAATGAGAAGAA--CGTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGT
*
835847 TCAATCTTTTGCTTGAATTCATCA-TTGATGGATC-A-ATTGCCAGGTAGA
64 TCAACCTTTTGCTTGAATTCATCATTTGATGGATCAACATTGCCAGGTAGA
**
835895 GTTC-T-A-GAGAA-CTCGTCATCTGAAGAAGGAAGAA-AAGTTCATAATGAGAAGAACTT-TTC
1 GTTCATAATGAGAAGAACGTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTC
835954 AACCTTTTGCTTGAATTCATCATTTGATGGATCAACATTGCCAGGTAGA
66 AACCTTTTGCTTGAATTCATCATTTGATGGATCAACATTGCCAGGTAGA
836003 GTTCATAATGAGAAGAACTTGTCATCTGAAGAA-G-AGAAGAAGTTCAT
1 GTTCATAATGAGAAGAAC--GTCATCTGAAGAAGGAAGAAGAAGTTCAT
836050 TCATATATAA
Statistics
Matches: 460, Mismatches: 20, Indels: 29
0.90 0.04 0.06
Matches are distributed among these distances:
105 24 0.05
106 32 0.07
107 22 0.05
108 17 0.04
109 1 0.00
110 6 0.01
111 6 0.01
112 9 0.02
113 170 0.37
114 96 0.21
115 11 0.02
116 66 0.14
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.29
Consensus pattern (114 bp):
GTTCATAATGAGAAGAACGTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTC
AACCTTTTGCTTGAATTCATCATTTGATGGATCAACATTGCCAGGTAGA
Found at i:836018 original size:221 final size:228
Alignment explanation
Indices: 835442--836049 Score: 938
Period size: 221 Copynumber: 2.7 Consensus size: 228
835432 TCCAGAAAAG
*
835442 GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCA
1 GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAA-AAGTTCATAATGAGAAGAACTTGTTCA
* * * * * * * * *
835507 ACCTTTTACCTGAATTCATCAAATTGATGGATTATCTTTTCTAGAGAAG-GTTCATAATGAGAAG
65 ACCTTTTGCTTGAATTCATC-ATTTGATGGATCAACATTGCCAG-GTAGAGTTCATAATGAGAAG
*
835571 AA--C-TCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAATCTTTTGCTTG
128 AACTCGTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAATCTTTTGCTTG
835633 AATTCATCATTTGATGGATCAACATTGCCAGGTAGA
193 AATTCATCATTTGATGGATCAACATTGCCAGGTAGA
835669 GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAAAAGTTCATAATGAGAAGAACTTGTTCA
1 GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAG-AAAAGTTCATAATGAGAAGAACTTGTTCA
835734 ACCTTTTGCTTGAATTCATCATTTGATGGATCAACATTGCCAGGTAGAGTTCATAATGAGAAGAA
65 ACCTTTTGCTTGAATTCATCATTTGATGGATCAACATTGCCAGGTAGAGTTCATAATGAGAAGAA
*
835799 CTCGTCATCTGAAGAAGGAAGAATAAGTTCATAATGAGAAGAACTTGTTCAATCTTTTGCTTGAA
130 CTCGTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAATCTTTTGCTTGAA
835864 TTCATCA-TTGATGGATC-A-ATTGCCAGGTAGA
195 TTCATCATTTGATGGATCAACATTGCCAGGTAGA
**
835895 GTTC-T-A-GAGAA-CTCGTCATCTGAAGAAGGAAGAAAAGTTCATAATGAGAAGAACTT-TTCA
1 GTTCATAATGAGAAGAAC-TCATCTGAAGAAGGAAGAAAAGTTCATAATGAGAAGAACTTGTTCA
835955 ACCTTTTGCTTGAATTCATCATTTGATGGATCAACATTGCCAGGTAGAGTTCATAATGAGAAGAA
65 ACCTTTTGCTTGAATTCATCATTTGATGGATCAACATTGCCAGGTAGAGTTCATAATGAGAAGAA
*
836020 CTTGTCATCTGAAGAA-G-AGAAGAAGTTCAT
130 CTCGTCATCTGAAGAAGGAAGAAGAAGTTCAT
836050 TCATATATAA
Statistics
Matches: 359, Mismatches: 16, Indels: 20
0.91 0.04 0.05
Matches are distributed among these distances:
219 12 0.03
220 1 0.00
221 84 0.23
222 25 0.07
223 22 0.06
224 1 0.00
225 4 0.01
226 51 0.14
227 80 0.22
228 13 0.04
229 66 0.18
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.29
Consensus pattern (228 bp):
GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAAAGTTCATAATGAGAAGAACTTGTTCAA
CCTTTTGCTTGAATTCATCATTTGATGGATCAACATTGCCAGGTAGAGTTCATAATGAGAAGAAC
TCGTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAATCTTTTGCTTGAAT
TCATCATTTGATGGATCAACATTGCCAGGTAGA
Found at i:836391 original size:3 final size:3
Alignment explanation
Indices: 836383--836445 Score: 85
Period size: 3 Copynumber: 21.7 Consensus size: 3
836373 ATATTAAATA
* *
836383 TAT TAT TAT TGT TAT CAT TAT TAT TAT TAT TAT TA- TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
836430 CA- TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TA
836446 AATATATATT
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
2 3 0.06
3 49 0.94
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:836455 original size:14 final size:15
Alignment explanation
Indices: 836374--836456 Score: 60
Period size: 17 Copynumber: 5.1 Consensus size: 15
836364 TTTTTACCCA
836374 TATTAAATATATTAT
1 TATTAAATATATTAT
**
836389 TATTGTTATCATTATTAT
1 TATT-AAAT-A-TATTAT
*
836407 TATTATTATTATATTAT
1 TATTA--AATATATTAT
*
836424 TATTATCATATTATTAT
1 TATTA-AATA-TATTAT
836441 TATTAAATATA-TAT
1 TATTAAATATATTAT
836455 TA
1 TA
836457 AATACATATA
Statistics
Matches: 54, Mismatches: 8, Indels: 13
0.72 0.11 0.17
Matches are distributed among these distances:
14 5 0.09
15 6 0.11
16 8 0.15
17 23 0.43
18 11 0.20
19 1 0.02
ACGTcount: A:0.39, C:0.02, G:0.01, T:0.58
Consensus pattern (15 bp):
TATTAAATATATTAT
Found at i:836465 original size:31 final size:32
Alignment explanation
Indices: 836374--836479 Score: 92
Period size: 31 Copynumber: 3.2 Consensus size: 32
836364 TTTTTACCCA
*
836374 TATTAAATATATTATTATTGTTATCATTATTATTAT
1 TATTAAATATATTATTA---ATATCA-TATTATTAT
* *
836410 TATT-ATTATATTATTATTATCATATTATTAT
1 TATTAAATATATTATTAATATCATATTATTAT
* * *
836441 TATTAAATATA-TATTAA-ATACATATAAATAA
1 TATTAAATATATTATTAATAT-CATATTATTAT
836472 TATTAAAT
1 TATTAAAT
836480 TACAAAGCCC
Statistics
Matches: 62, Mismatches: 6, Indels: 9
0.81 0.08 0.12
Matches are distributed among these distances:
30 2 0.03
31 34 0.55
32 11 0.18
35 11 0.18
36 4 0.06
ACGTcount: A:0.43, C:0.03, G:0.01, T:0.53
Consensus pattern (32 bp):
TATTAAATATATTATTAATATCATATTATTAT
Found at i:836470 original size:10 final size:10
Alignment explanation
Indices: 836441--836479 Score: 53
Period size: 11 Copynumber: 3.8 Consensus size: 10
836431 ATATTATTAT
836441 TATTAAATATA
1 TATTAAATA-A
836452 TATTAAATACA
1 TATTAAATA-A
836463 TA-TAAATAA
1 TATTAAATAA
836472 TATTAAAT
1 TATTAAAT
836480 TACAAAGCCC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
9 3 0.12
10 11 0.42
11 12 0.46
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (10 bp):
TATTAAATAA
Found at i:837922 original size:13 final size:12
Alignment explanation
Indices: 837885--837921 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
837875 ATAATAAATA
837885 AATATTTATTTT
1 AATATTTATTTT
*
837897 AATAAATTATTTT
1 AAT-ATTTATTTT
837910 AATATTTATTTT
1 AATATTTATTTT
837922 TTCAATATCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
12 11 0.50
13 11 0.50
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (12 bp):
AATATTTATTTT
Found at i:840825 original size:34 final size:35
Alignment explanation
Indices: 840742--840857 Score: 207
Period size: 35 Copynumber: 3.3 Consensus size: 35
840732 TTTATGCACC
840742 GATGCATAGATAGTGCATCGATGCACCCGTCAAGG
1 GATGCATAGATAGTGCATCGATGCACCCGTCAAGG
840777 GATGCATAGATAGTGCATCGATGCACCCGTCAAGG
1 GATGCATAGATAGTGCATCGATGCACCCGTCAAGG
*
840812 GA-GTATAGATAGTGCATCGATGCACCCGTCAAGG
1 GATGCATAGATAGTGCATCGATGCACCCGTCAAGG
*
840846 GATGCATCGATA
1 GATGCATAGATA
840858 CATGGTGTAG
Statistics
Matches: 77, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
34 33 0.43
35 44 0.57
ACGTcount: A:0.29, C:0.22, G:0.28, T:0.21
Consensus pattern (35 bp):
GATGCATAGATAGTGCATCGATGCACCCGTCAAGG
Found at i:850848 original size:18 final size:18
Alignment explanation
Indices: 850825--850863 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
850815 TAGGAATAAA
850825 TTAAAGGTTTAGCTCATT
1 TTAAAGGTTTAGCTCATT
850843 TTAAAGGTTTAGCTCATT
1 TTAAAGGTTTAGCTCATT
850861 TTA
1 TTA
850864 GAATATAGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.28, C:0.10, G:0.15, T:0.46
Consensus pattern (18 bp):
TTAAAGGTTTAGCTCATT
Found at i:852060 original size:31 final size:31
Alignment explanation
Indices: 851988--852066 Score: 104
Period size: 31 Copynumber: 2.5 Consensus size: 31
851978 AGTTTCAAAA
* * *
851988 GTAACAAATTAGTCACTAACGTTATCAATTT
1 GTAACAAAATGGTCACTAACATTATCAATTT
* *
852019 GTAACAAAATGGTTACTAACATTATCGATTT
1 GTAACAAAATGGTCACTAACATTATCAATTT
*
852050 GTAACAAAATGATCACT
1 GTAACAAAATGGTCACT
852067 CCCCATTATC
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.41, C:0.15, G:0.11, T:0.33
Consensus pattern (31 bp):
GTAACAAAATGGTCACTAACATTATCAATTT
Found at i:853165 original size:31 final size:31
Alignment explanation
Indices: 853057--853178 Score: 173
Period size: 29 Copynumber: 4.1 Consensus size: 31
853047 GTCCTGAAGG
* * *
853057 ACCTATCCATATGT-TCGAAGAACATAGGTA
1 ACCTGTCCATATGTCCCGAAGGACATAGGTA
853087 ACCTGTCCATATGTCCCGAAGGAC--AGGTA
1 ACCTGTCCATATGTCCCGAAGGACATAGGTA
853116 ACCTGTCCATA--TCCCGAAGGACATAGGTA
1 ACCTGTCCATATGTCCCGAAGGACATAGGTA
*
853145 AACTGTCCATATGTCCCGAAGGACATAGGTA
1 ACCTGTCCATATGTCCCGAAGGACATAGGTA
853176 ACC
1 ACC
853179 CTCGACTCTT
Statistics
Matches: 82, Mismatches: 5, Indels: 9
0.85 0.05 0.09
Matches are distributed among these distances:
27 11 0.13
29 31 0.38
30 13 0.16
31 27 0.33
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.22
Consensus pattern (31 bp):
ACCTGTCCATATGTCCCGAAGGACATAGGTA
Found at i:853532 original size:25 final size:26
Alignment explanation
Indices: 853504--853568 Score: 67
Period size: 31 Copynumber: 2.2 Consensus size: 26
853494 ACTTATCACT
853504 AACATATACTTATACAAATCATGTAAACAC
1 AACATATACTTATACAAATCATGT----AC
853534 TAACATATACTTATACAAATCATGTAAC
1 -AACATATACTTATACAAATCATGT-AC
853562 ATACATA
1 A-ACATA
853569 ATAACATGTT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
27 1 0.03
28 7 0.22
31 24 0.75
ACGTcount: A:0.49, C:0.18, G:0.03, T:0.29
Consensus pattern (26 bp):
AACATATACTTATACAAATCATGTAC
Found at i:853536 original size:31 final size:31
Alignment explanation
Indices: 853500--853560 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
853490 CATGACTTAT
853500 CACTAACATATACTTATACAAATCATGTAAA
1 CACTAACATATACTTATACAAATCATGTAAA
853531 CACTAACATATACTTATACAAATCATGTAA
1 CACTAACATATACTTATACAAATCATGTAA
853561 CATACATAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.48, C:0.20, G:0.03, T:0.30
Consensus pattern (31 bp):
CACTAACATATACTTATACAAATCATGTAAA
Found at i:854554 original size:10 final size:10
Alignment explanation
Indices: 854539--854567 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
854529 CTTCACGTAT
854539 GAAGAAGAAA
1 GAAGAAGAAA
854549 GAAGAAGAAA
1 GAAGAAGAAA
854559 GAAGAAGAA
1 GAAGAAGAA
854568 CAAGTTCCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (10 bp):
GAAGAAGAAA
Found at i:855120 original size:29 final size:31
Alignment explanation
Indices: 855086--855154 Score: 88
Period size: 29 Copynumber: 2.3 Consensus size: 31
855076 GGTGACTATT
* * * *
855086 TTTGTTACAATTC-ATAACGTTAGTGATC-A
1 TTTGTTACAAATCAATAACATTAGTAACCAA
855115 TTTGTTACAAATCAATAACATTAGTAACCAA
1 TTTGTTACAAATCAATAACATTAGTAACCAA
855146 TTTGTTACA
1 TTTGTTACA
855155 TTTGAAATTT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 12 0.35
30 12 0.35
31 10 0.29
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.39
Consensus pattern (31 bp):
TTTGTTACAAATCAATAACATTAGTAACCAA
Done.