genome.fa.s842.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000842.1 Hibiscus syriacus cultivar Beakdansim tig00001625_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83399

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5529--5575	20	2.3	20	100	0	94	34	27	19	19	1.96
5569--5694	20	6.3	20	76	11	125	42	26	11	19	1.85
5549--5634	39	2.2	40	87	10	124	39	27	15	17	1.89
5569--5694	59	2.1	60	86	4	175	42	26	11	19	1.85
5565--5676	39	2.9	38	82	7	127	43	25	13	16	1.85
6187--6229	20	2.2	20	82	0	50	16	18	18	46	1.84
10214--10248	17	2.0	18	88	5	54	17	2	25	54	1.57
12486--12538	24	2.2	24	90	3	81	45	20	15	18	1.85
13490--13541	20	2.7	20	84	3	61	32	7	21	38	1.82
13573--13615	20	2.2	20	91	0	68	23	18	23	34	1.96
13593--13700	40	2.7	40	80	11	139	19	16	24	39	1.91
13609--13675	20	3.3	20	79	8	82	17	16	25	40	1.90
13529--13665	60	2.3	59	79	13	163	22	16	21	40	1.91
13671--13737	20	3.3	20	68	4	53	28	17	23	29	1.97
13685--13777	20	4.6	20	72	6	80	27	15	29	27	1.96
16312--16437	31	4.0	31	86	4	173	19	17	22	40	1.91
17307--17353	19	2.5	19	82	6	60	34	17	10	38	1.84
26378--26441	24	2.7	23	83	7	76	45	1	10	42	1.49
26628--26768	31	4.7	30	66	17	80	31	20	4	43	1.71
26618--26766	60	2.5	58	83	5	174	32	20	4	42	1.70
26883--27019	60	2.3	62	79	12	144	47	6	15	30	1.71
27479--27530	14	3.8	13	80	7	50	63	1	0	34	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44179--44215	19	1.9	19	88	0	56	54	2	2	40	1.29
44305--44394	27	3.2	27	71	18	76	73	0	5	21	1.03
53348--53471	63	2.0	63	95	0	221	50	13	12	22	1.76
53601--53659	31	1.9	31	89	6	93	44	1	8	45	1.44
54618--54643	3	8.7	3	100	0	52	69	0	0	30	0.89
54674--54746	12	5.9	13	76	9	55	71	1	6	20	1.17
54678--54729	19	2.7	20	76	8	54	69	1	5	23	1.20
56181--56235	4	13.8	4	74	14	51	72	0	3	23	1.00
56170--56232	23	2.6	23	73	16	65	71	0	4	23	1.05
56252--56329	32	2.7	28	79	14	86	51	3	0	44	1.19
56279--56392	36	3.3	34	80	15	110	48	4	1	45	1.32
56272--56348	31	2.4	32	91	6	122	49	5	1	44	1.33
56460--56520	2	30.5	2	100	0	122	49	0	0	50	1.00
56343--56478	42	3.4	40	88	7	204	46	4	2	46	1.38
56520--56558	2	19.5	2	100	0	78	0	0	48	51	1.00
56556--56702	73	2.0	73	90	5	235	42	5	4	47	1.45
56558--56702	35	4.0	36	85	7	197	43	5	3	47	1.43
56687--56719	2	17.0	2	93	6	59	51	0	0	48	1.00
57380--58435	84	12.6	84	88	0	1450	23	20	26	29	1.98
57400--58435	168	6.2	168	92	0	1653	23	20	26	29	1.98
59388--59433	23	2.0	23	83	8	58	54	13	2	30	1.50
71469--71728	100	2.6	98	88	2	369	31	18	16	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78486--78518	14	2.4	14	90	10	50	48	18	15	18	1.81
79796--79838	13	3.3	12	84	12	50	39	11	0	48	1.40
80351--80398	2	23.5	2	82	4	60	47	8	0	43	1.33
80358--80468	8	13.8	8	71	19	61	47	12	2	36	1.56
80516--80554	18	2.2	17	90	4	60	43	5	12	38	1.65
80767--80812	4	12.0	4	90	9	78	50	23	0	26	1.50
80767--80819	19	2.8	19	94	0	88	50	20	0	28	1.48
80767--80812	15	3.0	16	93	6	78	50	23	0	26	1.50
82763--82837	37	2.0	38	94	2	134	28	13	24	34	1.93

Tables:   1

The End!