Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008421.1 Hibiscus syriacus cultivar Beakdansim tig00111201_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1159951
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 4 of 6
Found at i:618043 original size:12 final size:12
Alignment explanation
Indices: 618026--618066 Score: 75
Period size: 12 Copynumber: 3.5 Consensus size: 12
618016 CTCGAGACTC
618026 GAGCTCGATTCA
1 GAGCTCGATTCA
618038 GAGCTCGATTCA
1 GAGCTCGATTCA
618050 GAGCTCGATTCA
1 GAGCTCGATTCA
618062 -AGCTC
1 GAGCTC
618067 AACATTGCCC
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
11 5 0.17
12 24 0.83
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (12 bp):
GAGCTCGATTCA
Found at i:620902 original size:11 final size:10
Alignment explanation
Indices: 620881--620938 Score: 50
Period size: 10 Copynumber: 6.0 Consensus size: 10
620871 TCAATTTTTT
620881 AAAATCAATA
1 AAAATCAATA
620891 AAAATGCAATA
1 AAAAT-CAATA
*
620902 AAAA--ATTA
1 AAAATCAATA
* *
620910 AAAGTGAATA
1 AAAATCAATA
*
620920 AAATTCAATA
1 AAAATCAATA
620930 AAAAT-AATA
1 AAAATCAATA
620939 TAAAGCTAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 7
0.75 0.12 0.13
Matches are distributed among these distances:
8 6 0.15
9 4 0.10
10 20 0.51
11 9 0.23
ACGTcount: A:0.67, C:0.05, G:0.05, T:0.22
Consensus pattern (10 bp):
AAAATCAATA
Found at i:620911 original size:28 final size:28
Alignment explanation
Indices: 620879--620933 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
620869 ATTCAATTTT
620879 TTAAAA-TCAATAAAAATGCAATAAAAAA
1 TTAAAAGTCAAT-AAAATGCAATAAAAAA
* *
620907 TTAAAAGTGAATAAAATTCAATAAAAA
1 TTAAAAGTCAATAAAATGCAATAAAAA
620934 TAATATAAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 20 0.83
29 4 0.17
ACGTcount: A:0.65, C:0.05, G:0.05, T:0.24
Consensus pattern (28 bp):
TTAAAAGTCAATAAAATGCAATAAAAAA
Found at i:623109 original size:19 final size:20
Alignment explanation
Indices: 623080--623128 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
623070 GATGATGTCA
623080 AAAACCACTTGG-TTTAGCTC
1 AAAACCACTTGGTTTTAGC-C
623100 AAAA-CACTTGGTTTTAGCC
1 AAAACCACTTGGTTTTAGCC
623119 AAAAACCACT
1 -AAAACCACT
623129 ATCAGTCTCG
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
19 8 0.31
20 14 0.54
21 4 0.15
ACGTcount: A:0.37, C:0.24, G:0.12, T:0.27
Consensus pattern (20 bp):
AAAACCACTTGGTTTTAGCC
Found at i:625578 original size:20 final size:20
Alignment explanation
Indices: 625555--625602 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
625545 AGGTGTGTTG
625555 AAGCTATTGTGAGCAAAATC
1 AAGCTATTGTGAGCAAAATC
625575 AAGCTATTGTGAGCAAAATC
1 AAGCTATTGTGAGCAAAATC
625595 AAGCTATT
1 AAGCTATT
625603 TTGGAGCTCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.40, C:0.15, G:0.19, T:0.27
Consensus pattern (20 bp):
AAGCTATTGTGAGCAAAATC
Found at i:626656 original size:2 final size:2
Alignment explanation
Indices: 626649--626674 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
626639 TTGCTTATTG
626649 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
626675 GCATGTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:635983 original size:22 final size:23
Alignment explanation
Indices: 635958--636000 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
635948 AAAAATACAC
635958 ATATAAAAA-AATATAATTTTTT
1 ATATAAAAATAATATAATTTTTT
*
635980 ATATAAAAATTATATAATTTT
1 ATATAAAAATAATATAATTTT
636001 AAAATCTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (23 bp):
ATATAAAAATAATATAATTTTTT
Found at i:636196 original size:39 final size:38
Alignment explanation
Indices: 636119--636217 Score: 121
Period size: 39 Copynumber: 2.6 Consensus size: 38
636109 TAAAAGAACT
*
636119 TATT-TGAT-AAATAATTTAAAAATTAAGAATTTAAAA
1 TATTATGATAAAATAATTTAAAAAGTAAGAATTTAAAA
* *
636155 TATTATGATAAAATAATTTAAGAAAGTAATAATTTTAAA
1 TATTATGATAAAATAATTTAA-AAAGTAAGAATTTAAAA
* * *
636194 TATTACGGTAAAATAATTTGAAAA
1 TATTATGATAAAATAATTTAAAAA
636218 TTAGAAATAA
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
36 4 0.07
37 4 0.07
38 14 0.26
39 32 0.59
ACGTcount: A:0.54, C:0.01, G:0.08, T:0.37
Consensus pattern (38 bp):
TATTATGATAAAATAATTTAAAAAGTAAGAATTTAAAA
Found at i:640465 original size:47 final size:47
Alignment explanation
Indices: 640420--640671 Score: 375
Period size: 47 Copynumber: 5.4 Consensus size: 47
640410 TACATTTAAA
* * *
640420 TTATGACATCCTTTTATACCTTAATGCATCCTTTCATGCATTTTA-A
1 TTATGACATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAGT
640466 TTATGACATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTT-GT
1 TTATGACATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAGT
* *
640512 TTATGGCATCCTTTCATGCCTTAATACATCCTTTCATGCATTTTAGT
1 TTATGACATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAGT
* * *
640559 TTATGGCATCATTTCATGCCTTAATGCATCATTTCATGCATTTTAGT
1 TTATGACATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAGT
** *
640606 TTATGACATCCTTTCAAACTTTAATGCATCCTTTCATGCATTTTAGT
1 TTATGACATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAGT
640653 TTATTG-CATCCTTTCATGC
1 TTA-TGACATCCTTTCATGC
640672 ATTTTAGTTT
Statistics
Matches: 187, Mismatches: 16, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
46 84 0.45
47 101 0.54
48 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.10, T:0.45
Consensus pattern (47 bp):
TTATGACATCCTTTCATGCCTTAATGCATCCTTTCATGCATTTTAGT
Found at i:640497 original size:20 final size:20
Alignment explanation
Indices: 640426--640597 Score: 92
Period size: 20 Copynumber: 7.7 Consensus size: 20
640416 TAAATTATGA
* *
640426 CATCCTTTTATACCTTAATG
1 CATCCTTTCATGCCTTAATG
*
640446 CATCCTTTCATGCATTTTAATTATG
1 CATCCTTTCATGC--CTT-A--ATG
640471 ACATCCTTTCATGCCTTAATG
1 -CATCCTTTCATGCCTTAATG
* *
640492 CATCCTTTCATGCATTTTGTTTATGG
1 CATCCTTTCATGC-----CTTAAT-G
*
640518 CATCCTTTCATGCCTTAATA
1 CATCCTTTCATGCCTTAATG
*
640538 CATCCTTTCATGCATTTTAGTTTATGG
1 CATCCTTTCATGC--CTTA----AT-G
*
640565 CATCATTTCATGCCTTAATG
1 CATCCTTTCATGCCTTAATG
*
640585 CATCATTTCATGC
1 CATCCTTTCATGC
640598 ATTTTAGTTT
Statistics
Matches: 120, Mismatches: 13, Indels: 38
0.70 0.08 0.22
Matches are distributed among these distances:
20 51 0.43
21 9 0.08
22 5 0.04
23 2 0.02
24 2 0.02
25 10 0.08
26 29 0.24
27 12 0.10
ACGTcount: A:0.22, C:0.24, G:0.10, T:0.44
Consensus pattern (20 bp):
CATCCTTTCATGCCTTAATG
Found at i:640668 original size:74 final size:74
Alignment explanation
Indices: 640583--640739 Score: 251
Period size: 74 Copynumber: 2.1 Consensus size: 74
640573 CATGCCTTAA
* * *
640583 TGCATCATTTCATGCATTTTAGTTTATGACATCCTTTCAAACTTTAATGCATCCTTTCATGCATT
1 TGCATCCTTTCATGCATTTTAGTTTATGACATCCTTTCAAACCTTAATACATCCTTTCATGCATT
640648 TTAGTTTAT
66 TTAGTTTAT
* **
640657 TGCATCCTTTCATGCATTTTAGTTTATGGCATCCTTTCATGCCTTAATACATCCTTTCATGCATT
1 TGCATCCTTTCATGCATTTTAGTTTATGACATCCTTTCAAACCTTAATACATCCTTTCATGCATT
640722 TTAGTTTAT
66 TTAGTTTAT
*
640731 GGCATCCTT
1 TGCATCCTT
640740 AATTATGGAT
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
74 76 1.00
ACGTcount: A:0.22, C:0.21, G:0.11, T:0.46
Consensus pattern (74 bp):
TGCATCCTTTCATGCATTTTAGTTTATGACATCCTTTCAAACCTTAATACATCCTTTCATGCATT
TTAGTTTAT
Found at i:641207 original size:19 final size:20
Alignment explanation
Indices: 641140--641210 Score: 72
Period size: 22 Copynumber: 3.5 Consensus size: 20
641130 GGCTCCTCAT
*
641140 TATCGATACCCTTACTATGG
1 TATCGATACCCATACTATGG
* *
641160 TATTGATACTACCATACTATAG
1 TATCGATAC--CCATACTATGG
* *
641182 TACCGATACCC-TATTATGG
1 TATCGATACCCATACTATGG
641201 TATCGATACC
1 TATCGATACC
641211 ATTTTTGCAT
Statistics
Matches: 41, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
19 15 0.37
20 10 0.24
22 16 0.39
ACGTcount: A:0.30, C:0.24, G:0.13, T:0.34
Consensus pattern (20 bp):
TATCGATACCCATACTATGG
Found at i:643095 original size:16 final size:16
Alignment explanation
Indices: 643048--643096 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 16
643038 AAAAATAAAA
643048 TTGAAAGTTAAAGTAA-
1 TTGAAAGTT-AAGTAAT
643064 TT-AAA-TTAGGAGTAAT
1 TTGAAAGTTA--AGTAAT
643080 TTGAAAGTTAAGTAAT
1 TTGAAAGTTAAGTAAT
643096 T
1 T
643097 AAATTAAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
13 1 0.04
14 2 0.07
15 8 0.29
16 11 0.39
17 3 0.11
18 3 0.11
ACGTcount: A:0.45, C:0.00, G:0.18, T:0.37
Consensus pattern (16 bp):
TTGAAAGTTAAGTAAT
Found at i:647013 original size:28 final size:28
Alignment explanation
Indices: 646994--647048 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
646984 ACTCAGTTTC
*
646994 ATATTTTTTTATTTTTAAACTAAATTTA
1 ATATTTTTATATTTTTAAACTAAATTTA
*
647022 ATATTTTTATATTTTTAAACAAAATTT
1 ATATTTTTATATTTTTAAACTAAATTT
647049 TATAAAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (28 bp):
ATATTTTTATATTTTTAAACTAAATTTA
Found at i:649403 original size:20 final size:20
Alignment explanation
Indices: 649378--649415 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
649368 TAAAATACAA
649378 AATGAGATAGAAATAAGGCT
1 AATGAGATAGAAATAAGGCT
649398 AATGAGATAGAAATAAGG
1 AATGAGATAGAAATAAGG
649416 AATCATAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.53, C:0.03, G:0.26, T:0.18
Consensus pattern (20 bp):
AATGAGATAGAAATAAGGCT
Found at i:652094 original size:15 final size:16
Alignment explanation
Indices: 652076--652108 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
652066 TAATATATTT
652076 TTTC-TTAATAAAATA
1 TTTCATTAATAAAATA
*
652091 TTTCATTTATAAAATA
1 TTTCATTAATAAAATA
652107 TT
1 TT
652109 ATTAATGAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (16 bp):
TTTCATTAATAAAATA
Found at i:655605 original size:9 final size:9
Alignment explanation
Indices: 655593--655636 Score: 54
Period size: 9 Copynumber: 4.8 Consensus size: 9
655583 AGAAAAAAGT
655593 AATAAAATA
1 AATAAAATA
655602 AATAAAATA
1 AATAAAATA
655611 AATAAGACA-A
1 AATAA-A-ATA
*
655621 AATAAAACA
1 AATAAAATA
655630 AATAAAA
1 AATAAAA
655637 ACCTAAGAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
8 1 0.03
9 23 0.72
10 7 0.22
11 1 0.03
ACGTcount: A:0.77, C:0.05, G:0.02, T:0.16
Consensus pattern (9 bp):
AATAAAATA
Found at i:655743 original size:12 final size:12
Alignment explanation
Indices: 655728--655772 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
655718 ACAAAACCCA
655728 AAAAAATAAAAT
1 AAAAAATAAAAT
*
655740 AAAAAATAGAAT
1 AAAAAATAAAAT
655752 -AAAAAT--AAT
1 AAAAAATAAAAT
655761 AAAAAATGAAAA
1 AAAAAAT-AAAA
655773 ATAATATATA
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
9 3 0.11
10 6 0.21
11 6 0.21
12 11 0.39
13 2 0.07
ACGTcount: A:0.80, C:0.00, G:0.04, T:0.16
Consensus pattern (12 bp):
AAAAAATAAAAT
Found at i:671162 original size:10 final size:9
Alignment explanation
Indices: 671117--671160 Score: 52
Period size: 9 Copynumber: 4.8 Consensus size: 9
671107 GGAAAAAAGT
*
671117 AATAAAATA
1 AATAAAACA
*
671126 AATAAATCA
1 AATAAAACA
*
671135 AATAAGACAA
1 AATAAAAC-A
671145 AATAAAACA
1 AATAAAACA
671154 AATAAAA
1 AATAAAA
671161 ACCTAAGAAC
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
9 21 0.72
10 8 0.28
ACGTcount: A:0.75, C:0.07, G:0.02, T:0.16
Consensus pattern (9 bp):
AATAAAACA
Found at i:671283 original size:2 final size:2
Alignment explanation
Indices: 671278--671311 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
671268 TAAAAAAAAA
671278 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
671312 AAATGTAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:672443 original size:16 final size:16
Alignment explanation
Indices: 672422--672452 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
672412 CCGTGTCTTC
672422 TTTGTAACTGGGCTTG
1 TTTGTAACTGGGCTTG
*
672438 TTTGTATCTGGGCTT
1 TTTGTAACTGGGCTT
672453 TAGGGTTTGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.13, G:0.29, T:0.48
Consensus pattern (16 bp):
TTTGTAACTGGGCTTG
Found at i:673373 original size:30 final size:27
Alignment explanation
Indices: 673330--673392 Score: 72
Period size: 30 Copynumber: 2.2 Consensus size: 27
673320 TTTATAGACG
*
673330 TATGGTTAATCGATTCAAAAAAATATAATA
1 TATGGTCAATCGATT-AAAAAAATAT--TA
* *
673360 TATGGTCACTCGATTTAAAAAATATTA
1 TATGGTCAATCGATTAAAAAAATATTA
673387 TATGGT
1 TATGGT
673393 TACTTTCGTT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
27 8 0.27
29 9 0.30
30 13 0.43
ACGTcount: A:0.43, C:0.08, G:0.13, T:0.37
Consensus pattern (27 bp):
TATGGTCAATCGATTAAAAAAATATTA
Found at i:686793 original size:23 final size:23
Alignment explanation
Indices: 686767--686852 Score: 84
Period size: 23 Copynumber: 3.8 Consensus size: 23
686757 TTCTACGCGA
*
686767 TCCTTCGGGATAATTCTACATGG
1 TCCTTCGGGACAATTCTACATGG
* * *
686790 TCCTTCGAGACATTTATACATGG
1 TCCTTCGGGACAATTCTACATGG
* * **
686813 TCTTTCGGGACAATACTATGTGG
1 TCCTTCGGGACAATTCTACATGG
*
686836 TCCTTCGGAAC-ATTCTA
1 TCCTTCGGGACAATTCTA
686853 TGTGGCATTT
Statistics
Matches: 49, Mismatches: 14, Indels: 1
0.77 0.22 0.02
Matches are distributed among these distances:
22 5 0.10
23 44 0.90
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.35
Consensus pattern (23 bp):
TCCTTCGGGACAATTCTACATGG
Found at i:686856 original size:22 final size:23
Alignment explanation
Indices: 686810--686857 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
686800 CATTTATACA
* *
686810 TGGTCTTTCGGGACAATACTATG
1 TGGTCCTTCGGAACAATACTATG
*
686833 TGGTCCTTCGGAAC-ATTCTATG
1 TGGTCCTTCGGAACAATACTATG
686855 TGG
1 TGG
686858 CATTTCATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 10 0.45
23 12 0.55
ACGTcount: A:0.19, C:0.19, G:0.27, T:0.35
Consensus pattern (23 bp):
TGGTCCTTCGGAACAATACTATG
Found at i:688183 original size:10 final size:10
Alignment explanation
Indices: 688168--688242 Score: 61
Period size: 10 Copynumber: 7.7 Consensus size: 10
688158 CATTTAATAA
688168 ATAAACGAAC
1 ATAAACGAAC
688178 ATAAACGAAC
1 ATAAACGAAC
688188 ----ACGAAC
1 ATAAACGAAC
688194 ATAAACGAAC
1 ATAAACGAAC
** *
688204 ACGAAC-ATAA
1 ATAAACGA-AC
688214 ATGAACACGAAC
1 AT-AA-ACGAAC
688226 ATAAACGAAC
1 ATAAACGAAC
688236 ATAAACG
1 ATAAACG
688243 TTGGAGACCC
Statistics
Matches: 51, Mismatches: 6, Indels: 16
0.70 0.08 0.22
Matches are distributed among these distances:
6 6 0.12
9 1 0.02
10 35 0.69
11 3 0.06
12 5 0.10
13 1 0.02
ACGTcount: A:0.57, C:0.21, G:0.12, T:0.09
Consensus pattern (10 bp):
ATAAACGAAC
Found at i:688193 original size:16 final size:16
Alignment explanation
Indices: 688172--688236 Score: 121
Period size: 16 Copynumber: 4.1 Consensus size: 16
688162 TAATAAATAA
688172 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
688188 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
*
688204 ACGAACATAAATGAAC
1 ACGAACATAAACGAAC
688220 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
688236 A
1 A
688237 TAAACGTTGG
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 47 1.00
ACGTcount: A:0.57, C:0.23, G:0.12, T:0.08
Consensus pattern (16 bp):
ACGAACATAAACGAAC
Found at i:689002 original size:14 final size:14
Alignment explanation
Indices: 688985--689040 Score: 66
Period size: 14 Copynumber: 4.3 Consensus size: 14
688975 AATGAACATA
688985 AACGAACATAATCG
1 AACGAACATAATCG
688999 AACGAACAT-A---
1 AACGAACATAATCG
* *
689009 AACAAACATAACCG
1 AACGAACATAATCG
689023 AACGAACATAATCG
1 AACGAACATAATCG
689037 AACG
1 AACG
689041 TTCACGAACG
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
10 8 0.23
11 1 0.03
13 1 0.03
14 25 0.71
ACGTcount: A:0.54, C:0.23, G:0.12, T:0.11
Consensus pattern (14 bp):
AACGAACATAATCG
Found at i:689005 original size:24 final size:24
Alignment explanation
Indices: 688965--689039 Score: 98
Period size: 24 Copynumber: 3.1 Consensus size: 24
688955 GATTGAGTTA
*
688965 AACATAAAT-GAATGAACATAAACG
1 AACAT-AATCGAACGAACATAAACG
*
688989 AACATAATCGAACGAACATAAACA
1 AACATAATCGAACGAACATAAACG
* *
689013 AACATAACCGAACGAACATAATCG
1 AACATAATCGAACGAACATAAACG
689037 AAC
1 AAC
689040 GTTCACGAAC
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
23 3 0.07
24 42 0.93
ACGTcount: A:0.56, C:0.20, G:0.11, T:0.13
Consensus pattern (24 bp):
AACATAATCGAACGAACATAAACG
Found at i:689626 original size:18 final size:19
Alignment explanation
Indices: 689603--689638 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
689593 AATTTTAAGA
*
689603 TTAATTTT-TATTCGATTT
1 TTAATTTTAAATTCGATTT
689621 TTAATTTTAAATTCGATT
1 TTAATTTTAAATTCGATT
689639 CAATCGTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.28, C:0.06, G:0.06, T:0.61
Consensus pattern (19 bp):
TTAATTTTAAATTCGATTT
Found at i:690407 original size:38 final size:38
Alignment explanation
Indices: 690365--690440 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
690355 ATATCAAGAA
* *
690365 TTTGGGATATAATTCTTGAGGGAGTTGTAAGATTACAC
1 TTTGGGATATAATTCTTAAGGGAGTTATAAGATTACAC
690403 TTTGGGATATAATTCTTAAGGGAGTTATAAGATTACAC
1 TTTGGGATATAATTCTTAAGGGAGTTATAAGATTACAC
690441 CTTGTTCTCA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.37
Consensus pattern (38 bp):
TTTGGGATATAATTCTTAAGGGAGTTATAAGATTACAC
Found at i:690887 original size:30 final size:30
Alignment explanation
Indices: 690828--690915 Score: 99
Period size: 29 Copynumber: 3.0 Consensus size: 30
690818 ATATTTTGTC
* *
690828 TAGTGACTAAAGTGTAAGTTTTG-AAAGTT
1 TAGTGACTAAAATGTAAATTTTGAAAAGTT
* *
690857 TAGTGGCTAAAATATAAATTTTGAAAAGTT
1 TAGTGACTAAAATGTAAATTTTGAAAAGTT
* * *
690887 TAGAGACCAAAATGT-AATTTTTAAAAGTT
1 TAGTGACTAAAATGTAAATTTTGAAAAGTT
690916 ATATATTTTA
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.41, C:0.05, G:0.18, T:0.36
Consensus pattern (30 bp):
TAGTGACTAAAATGTAAATTTTGAAAAGTT
Found at i:694496 original size:3 final size:3
Alignment explanation
Indices: 694488--694522 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
694478 ATATTTCTCA
694488 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
694523 ATTGAAATAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:723002 original size:16 final size:16
Alignment explanation
Indices: 722968--723012 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
722958 GTTGTTTTTA
*
722968 AAATAAAAATAAGAATT
1 AAATAAAAA-AATAATT
*
722985 AAATAAAAAAATATTT
1 AAATAAAAAAATAATT
*
723001 AAATAAACAAAT
1 AAATAAAAAAAT
723013 TAAAGAGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
16 16 0.64
17 9 0.36
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.24
Consensus pattern (16 bp):
AAATAAAAAAATAATT
Found at i:723686 original size:19 final size:19
Alignment explanation
Indices: 723630--723692 Score: 54
Period size: 19 Copynumber: 3.2 Consensus size: 19
723620 CTATTTAAAC
**
723630 TAAAATACCTAAAAAATAAT
1 TAAAATA-CTAAAACCTAAT
* * *
723650 ATAATATTCTAAATCCTAAT
1 -TAAAATACTAAAACCTAAT
*
723670 TAAAATACTAAAACCTATT
1 TAAAATACTAAAACCTAAT
723689 TAAA
1 TAAA
723693 CTAAAATACC
Statistics
Matches: 33, Mismatches: 9, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
19 19 0.58
20 9 0.27
21 5 0.15
ACGTcount: A:0.56, C:0.13, G:0.00, T:0.32
Consensus pattern (19 bp):
TAAAATACTAAAACCTAAT
Found at i:723752 original size:76 final size:74
Alignment explanation
Indices: 723650--723816 Score: 228
Period size: 76 Copynumber: 2.2 Consensus size: 74
723640 AAAAAATAAT
* * *
723650 ATAATATTCTAAATCCTAATTAAAATACTAAAACCTATTTAAACTAAAATACCTAAAACAAAGAT
1 ATAATATCCTAAA-CTTAATTAAAATACTAAAACCTATTTAAACTAAAATA-CAAAAACAAA-AT
723715 AAAATA-TAAAA
63 AAAATATTAAAA
* *
723726 ATAATATCCTAAGACTTAATTAAAATACTAAAACCTATTTAAACTAAAATACAAAAATAAAATAT
1 ATAATATCCTAA-ACTTAATTAAAATACTAAAACCTATTTAAACTAAAATACAAAAACAAAATAA
*
723791 AATATTTAAA
65 AATATTAAAA
*
723801 ATATTATCCTAAACTT
1 ATAATATCCTAAACTT
723817 GAGTTTAATT
Statistics
Matches: 82, Mismatches: 7, Indels: 6
0.86 0.07 0.06
Matches are distributed among these distances:
74 11 0.13
75 23 0.28
76 47 0.57
77 1 0.01
ACGTcount: A:0.56, C:0.13, G:0.01, T:0.31
Consensus pattern (74 bp):
ATAATATCCTAAACTTAATTAAAATACTAAAACCTATTTAAACTAAAATACAAAAACAAAATAAA
ATATTAAAA
Found at i:723930 original size:146 final size:149
Alignment explanation
Indices: 723760--724062 Score: 486
Period size: 146 Copynumber: 2.0 Consensus size: 149
723750 ATACTAAAAC
*
723760 CTATTTAAACTAAAATACAAAAATAAAATATAATATTTAAAATATTATCCTAAACTTGAGTTTAA
1 CTATTTAAACTAAAATAAAAAAATAAAATATAATATTTAAAATATTATCCTAAACTTGAGTTTAA
* *
723825 TTCAAATCCGAATTCCAGCCAGC-TT-TT-ATAAAAAATCTACAGAATTGTGTCTTTTTTGTGCA
66 TTCAAATCCGAATTCCAGCCAGCTTTATTAATAAAAAATCTACAGAATTGTATCTTTTTTATGCA
723887 ATTTCCAGAATCTTACGTT
131 ATTTCCAGAATCTTACGTT
*
723906 CTATTTAAACTAAAATAAAAAAATATAATATAATATTTAAAATATTATCCTAAACTTGAGTTTAA
1 CTATTTAAACTAAAATAAAAAAATAAAATATAATATTTAAAATATTATCCTAAACTTGAGTTTAA
*
723971 TTCAAATCCGAATTCCAGCCAGCTTTGATTCCGAAAATAAAAAATCTGCAGAATTGTATCTTTTT
66 TTCAAATCCGAATTCCAGCCAGCTTT-ATT-----AATAAAAAATCTACAGAATTGTATCTTTTT
724036 TATGCAATTTCCAGAATCTTACGTT
125 TATGCAATTTCCAGAATCTTACGTT
724061 CT
1 CT
724063 GTACAGAAAA
Statistics
Matches: 143, Mismatches: 5, Indels: 9
0.91 0.03 0.06
Matches are distributed among these distances:
146 86 0.60
147 2 0.01
149 2 0.01
155 53 0.37
ACGTcount: A:0.40, C:0.15, G:0.08, T:0.37
Consensus pattern (149 bp):
CTATTTAAACTAAAATAAAAAAATAAAATATAATATTTAAAATATTATCCTAAACTTGAGTTTAA
TTCAAATCCGAATTCCAGCCAGCTTTATTAATAAAAAATCTACAGAATTGTATCTTTTTTATGCA
ATTTCCAGAATCTTACGTT
Found at i:725577 original size:5 final size:5
Alignment explanation
Indices: 725567--725629 Score: 51
Period size: 5 Copynumber: 12.8 Consensus size: 5
725557 TTCAGAGAAA
** * *
725567 AAAAT AAAAT AAAAAT AAAAT -AAAT GGAAT GAAAT GAAAT -AAAT -AAAT
1 AAAAT AAAAT -AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
725615 AAAAT GAAAAT AAAA
1 AAAAT -AAAAT AAAA
725630 CGAAATGGGT
Statistics
Matches: 52, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
4 12 0.23
5 30 0.58
6 10 0.19
ACGTcount: A:0.73, C:0.00, G:0.08, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:725582 original size:11 final size:11
Alignment explanation
Indices: 725566--725590 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
725556 GTTCAGAGAA
725566 AAAAATAAAAT
1 AAAAATAAAAT
725577 AAAAATAAAAT
1 AAAAATAAAAT
725588 AAA
1 AAA
725591 TGGAATGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:725601 original size:19 final size:18
Alignment explanation
Indices: 725564--725628 Score: 60
Period size: 19 Copynumber: 3.4 Consensus size: 18
725554 ATGTTCAGAG
725564 AAAA-AAATAAAATAAAAAT
1 AAAATAAAT-AAAT-AAAAT
* *
725583 AAAATAAATGGAATGAAAT
1 AAAATAAAT-AAATAAAAT
*
725602 GAAATAAATAAATAAAAT
1 AAAATAAATAAATAAAAT
725620 GAAAATAAA
1 -AAAATAAA
725629 ACGAAATGGG
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
18 7 0.19
19 23 0.62
20 7 0.19
ACGTcount: A:0.74, C:0.00, G:0.08, T:0.18
Consensus pattern (18 bp):
AAAATAAATAAATAAAAT
Found at i:725613 original size:23 final size:24
Alignment explanation
Indices: 725579--725623 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
725569 AATAAAATAA
**
725579 AAATAAAATAAATGGAATGAAATG
1 AAATAAAATAAATAAAATGAAATG
725603 AAAT-AAATAAATAAAATGAAA
1 AAATAAAATAAATAAAATGAAA
725624 ATAAAACGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 15 0.79
24 4 0.21
ACGTcount: A:0.69, C:0.00, G:0.11, T:0.20
Consensus pattern (24 bp):
AAATAAAATAAATAAAATGAAATG
Found at i:728582 original size:19 final size:18
Alignment explanation
Indices: 728563--728611 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 18
728553 GTTGTTCTTA
728563 AAATAAAAAATAAGAATT
1 AAATAAAAAATAAGAATT
* *
728581 AAATAAAAGAAAAATAATT
1 AAATAAAA-AATAAGAATT
728600 AAATAAACAAAT
1 AAATAAA-AAAT
728612 TAAAGAGATT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
18 8 0.31
19 17 0.65
20 1 0.04
ACGTcount: A:0.73, C:0.02, G:0.04, T:0.20
Consensus pattern (18 bp):
AAATAAAAAATAAGAATT
Found at i:730953 original size:14 final size:14
Alignment explanation
Indices: 730934--730960 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
730924 TAGCCATTAG
730934 TTTCATAATCAATA
1 TTTCATAATCAATA
730948 TTTCATAATCAAT
1 TTTCATAATCAAT
730961 GTGACATGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.44
Consensus pattern (14 bp):
TTTCATAATCAATA
Found at i:743083 original size:27 final size:27
Alignment explanation
Indices: 743032--743083 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
743022 TGTTGATGTT
*
743032 ATATATGAATGAATGTGATTAATATCA
1 ATATATGAATGAATGTGATGAATATCA
* *
743059 ATATTTGAATGAATGTGATGGATAT
1 ATATATGAATGAATGTGATGAATAT
743084 TTTTTGATGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.40, C:0.02, G:0.19, T:0.38
Consensus pattern (27 bp):
ATATATGAATGAATGTGATGAATATCA
Found at i:743132 original size:22 final size:23
Alignment explanation
Indices: 743107--743149 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
743097 ATTTGAATGA
*
743107 ATGTG-ATTATATCAATATTTCT
1 ATGTGAATGATATCAATATTTCT
743129 ATGTGAATGATATCAATATTT
1 ATGTGAATGATATCAATATTT
743150 TATTTAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.35, C:0.07, G:0.12, T:0.47
Consensus pattern (23 bp):
ATGTGAATGATATCAATATTTCT
Found at i:744754 original size:101 final size:102
Alignment explanation
Indices: 744617--744802 Score: 243
Period size: 101 Copynumber: 1.8 Consensus size: 102
744607 CAATAAAAAC
** * * *
744617 AAAAAATAAACAATAAAATTTAAATTAAACTTACCAAACCACTCAAATACGATTTAATCTGTAAA
1 AAAAAATAAACAATAAAATTTAAATTAAACACACCAAACCACTCAAATACAACTTAATATGT-AA
*
744682 ATAAAAACAATTAGTCTAATACTTAATATTACTCAATA
65 ATAAAAACAAATAGTCTAATACTTAATATTACTCAATA
* * *
744720 AAAAAATAAA-AA-ATAATTT-AATCTAAACACACCAAACTACTTAAATACAACTTAATATGTAA
1 AAAAAATAAACAATAAAATTTAAAT-TAAACACACCAAACCACTCAAATACAACTTAATATGTAA
*
744782 ATAAAAATAAATAGTCTAATA
65 ATAAAAACAAATAGTCTAATA
744803 ATTATAATTT
Statistics
Matches: 72, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
100 24 0.33
101 36 0.50
102 2 0.03
103 10 0.14
ACGTcount: A:0.56, C:0.13, G:0.03, T:0.28
Consensus pattern (102 bp):
AAAAAATAAACAATAAAATTTAAATTAAACACACCAAACCACTCAAATACAACTTAATATGTAAA
TAAAAACAAATAGTCTAATACTTAATATTACTCAATA
Found at i:748819 original size:29 final size:29
Alignment explanation
Indices: 748786--748867 Score: 128
Period size: 29 Copynumber: 2.8 Consensus size: 29
748776 AAATTAAATT
**
748786 GATGTCATTGCTTACATTTTTTAAGTAAA
1 GATGTCATTGCTTACATCATTTAAGTAAA
*
748815 GATGTCATTGCTTACATCATTTAAGTAAT
1 GATGTCATTGCTTACATCATTTAAGTAAA
748844 GATGTCATTGCTTACATCAATTTA
1 GATGTCATTGCTTACATC-ATTTA
748868 GTTAGGTGAG
Statistics
Matches: 49, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
29 44 0.90
30 5 0.10
ACGTcount: A:0.30, C:0.13, G:0.13, T:0.43
Consensus pattern (29 bp):
GATGTCATTGCTTACATCATTTAAGTAAA
Found at i:752608 original size:18 final size:18
Alignment explanation
Indices: 752585--752623 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
752575 AGTGATTAAA
752585 TTAGGATTAATTTGAAGG
1 TTAGGATTAATTTGAAGG
752603 TTAGGATTAATTTGAAGG
1 TTAGGATTAATTTGAAGG
752621 TTA
1 TTA
752624 AGTAATTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.26, T:0.41
Consensus pattern (18 bp):
TTAGGATTAATTTGAAGG
Found at i:756351 original size:6 final size:6
Alignment explanation
Indices: 756340--756373 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
756330 AAAAATTACT
*
756340 AAAATA AAAATA AAAATA AAAAAA TAAAATA AAA
1 AAAATA AAAATA AAAATA AAAATA -AAAATA AAA
756374 GAATGATTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
6 20 0.80
7 5 0.20
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:756373 original size:30 final size:30
Alignment explanation
Indices: 756316--756373 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
756306 TGTCAATAGC
* * *
756316 AAAATATAAATAAAAAAAATTACTAAAATA
1 AAAATAAAAATAAAAAAAATAAATAAAATA
756346 AAAATAAAAAT-AAAAAAATAAAATAAAA
1 AAAATAAAAATAAAAAAAAT-AAATAAAA
756374 GAATGATTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 8 0.33
30 16 0.67
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.19
Consensus pattern (30 bp):
AAAATAAAAATAAAAAAAATAAATAAAATA
Found at i:757572 original size:7 final size:7
Alignment explanation
Indices: 757562--757607 Score: 56
Period size: 7 Copynumber: 6.4 Consensus size: 7
757552 AAAAATAAAA
757562 ATAATAT
1 ATAATAT
*
757569 ATAATAA
1 ATAATAT
757576 ATAATAT
1 ATAATAT
*
757583 ATAACACT
1 ATAATA-T
*
757591 ATACTAT
1 ATAATAT
757598 ATAATAT
1 ATAATAT
757605 ATA
1 ATA
757608 TTTTTAAAAA
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
7 27 0.84
8 5 0.16
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.37
Consensus pattern (7 bp):
ATAATAT
Found at i:757579 original size:14 final size:14
Alignment explanation
Indices: 757544--757586 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
757534 AAAAAAAGAA
* *
757544 AATAAATAAAAAAT
1 AATAAATAATATAT
757558 AA-AAATAATATAT
1 AATAAATAATATAT
757571 AATAAATAATATAT
1 AATAAATAATATAT
757585 AA
1 AA
757587 CACTATACTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
13 11 0.42
14 15 0.58
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (14 bp):
AATAAATAATATAT
Found at i:757624 original size:26 final size:27
Alignment explanation
Indices: 757595--757671 Score: 102
Period size: 27 Copynumber: 2.9 Consensus size: 27
757585 AACACTATAC
*
757595 TATATAATATATATTTTTAAAAAAAT-
1 TATATAATATATATTTTTCAAAAAATA
* *
757621 TATATATTATATATATTTTCAAAAACTA
1 TATATAATATATAT-TTTTCAAAAAATA
*
757649 TATATTATATATATTTTTCAAAA
1 TATATAATATATATTTTTCAAAA
757672 TATTTTCAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
26 13 0.30
27 19 0.43
28 12 0.27
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (27 bp):
TATATAATATATATTTTTCAAAAAATA
Found at i:757635 original size:28 final size:27
Alignment explanation
Indices: 757595--757671 Score: 102
Period size: 26 Copynumber: 2.9 Consensus size: 27
757585 AACACTATAC
* *
757595 TATATAATATATATTTTTAAAAAAATTA
1 TATATTATATATATTTTT-AAAAAACTA
*
757623 TATATTATATATA-TTTTCAAAAACTA
1 TATATTATATATATTTTTAAAAAACTA
*
757649 TATATTATATATATTTTTCAAAA
1 TATATTATATATATTTTTAAAAA
757672 TATTTTCAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
26 20 0.44
27 13 0.29
28 12 0.27
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (27 bp):
TATATTATATATATTTTTAAAAAACTA
Found at i:757678 original size:38 final size:39
Alignment explanation
Indices: 757633--757728 Score: 167
Period size: 38 Copynumber: 2.5 Consensus size: 39
757623 TATATTATAT
757633 ATATTTTCAAAAACTATATATTATATATAT-TTTTCAAA
1 ATATTTTCAAAAACTATATATTATATATATATTTTCAAA
*
757671 ATATTTTCAAAAATTATATATTATATATATATTTTCAAA
1 ATATTTTCAAAAACTATATATTATATATATATTTTCAAA
*
757710 ATGTTTTCAAAAACTATAT
1 ATATTTTCAAAAACTATAT
757729 GTTTTCAAAA
Statistics
Matches: 54, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
38 29 0.54
39 25 0.46
ACGTcount: A:0.45, C:0.07, G:0.01, T:0.47
Consensus pattern (39 bp):
ATATTTTCAAAAACTATATATTATATATATATTTTCAAA
Found at i:757727 original size:28 final size:27
Alignment explanation
Indices: 757696--757758 Score: 99
Period size: 28 Copynumber: 2.3 Consensus size: 27
757686 ATATATTATA
*
757696 TATATATTTTCAAAATGTTTTCAAAAAC
1 TATATATTTTCAAAATATTTTC-AAAAC
*
757724 TATATGTTTTCAAAATATTTTCAAAAC
1 TATATATTTTCAAAATATTTTCAAAAC
757751 TATATATT
1 TATATATT
757759 ATATATGTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
27 12 0.38
28 20 0.62
ACGTcount: A:0.41, C:0.10, G:0.03, T:0.46
Consensus pattern (27 bp):
TATATATTTTCAAAATATTTTCAAAAC
Found at i:757742 original size:39 final size:38
Alignment explanation
Indices: 757633--757749 Score: 155
Period size: 39 Copynumber: 3.0 Consensus size: 38
757623 TATATTATAT
757633 ATATTTTCAAAAACTATATATTAT-ATATATTTTTCAAA
1 ATATTTTCAAAAACTATATATTATAATATA-TTTTCAAA
*
757671 ATATTTTCAAAAATTATATATTATATATATATTTTCAAA
1 ATATTTTCAAAAACTATATATTATA-ATATATTTTCAAA
* * * *
757710 ATGTTTTCAAAAACTATATGTTTTCAAAATATTTTCAAA
1 ATATTTTCAAAAACTATATATTAT-AATATATTTTCAAA
757749 A
1 A
757750 CTATATATTA
Statistics
Matches: 70, Mismatches: 6, Indels: 5
0.86 0.07 0.06
Matches are distributed among these distances:
38 23 0.33
39 41 0.59
40 6 0.09
ACGTcount: A:0.44, C:0.08, G:0.02, T:0.46
Consensus pattern (38 bp):
ATATTTTCAAAAACTATATATTATAATATATTTTCAAA
Found at i:757773 original size:36 final size:38
Alignment explanation
Indices: 757724--757803 Score: 101
Period size: 41 Copynumber: 2.1 Consensus size: 38
757714 TTTCAAAAAC
* *
757724 TATATGTTTTC-AAAATATTTT-CAAAACTATATATTA
1 TATATGTTATCAAAAATATTTTCCAAAAATATATATTA
757760 TATATGTTATCAAAAAAAATATTTTCCAAAAATATATATTA
1 TATATGTTATC---AAAAATATTTTCCAAAAATATATATTA
757801 TAT
1 TAT
757804 TATATATATA
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
36 10 0.27
40 10 0.27
41 17 0.46
ACGTcount: A:0.46, C:0.07, G:0.03, T:0.44
Consensus pattern (38 bp):
TATATGTTATCAAAAATATTTTCCAAAAATATATATTA
Found at i:759320 original size:43 final size:43
Alignment explanation
Indices: 759273--759357 Score: 109
Period size: 43 Copynumber: 2.0 Consensus size: 43
759263 GGACCTATAT
*
759273 TTTTTTCAATTTAAGG-CCTCCTTTCGGGTTTTCACCCTAAACG
1 TTTTTTCAACTTAAGGTCC-CCTTTCGGGTTTTCACCCTAAACG
* * * *
759316 TTTTTTTAACTTGAGGTGCCCTTTCGGGTTTTCACCTTAAAC
1 TTTTTTCAACTTAAGGTCCCCTTTCGGGTTTTCACCCTAAAC
759358 AAAATATTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
43 35 0.97
44 1 0.03
ACGTcount: A:0.18, C:0.24, G:0.15, T:0.44
Consensus pattern (43 bp):
TTTTTTCAACTTAAGGTCCCCTTTCGGGTTTTCACCCTAAACG
Found at i:767889 original size:14 final size:14
Alignment explanation
Indices: 767870--767904 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
767860 ACCTTATAAA
*
767870 TCTTCCTTCGTCAG
1 TCTTCCTGCGTCAG
767884 TCTTCCTGCGTCAG
1 TCTTCCTGCGTCAG
767898 TCTTCCT
1 TCTTCCT
767905 ACAATGGTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.06, C:0.37, G:0.14, T:0.43
Consensus pattern (14 bp):
TCTTCCTGCGTCAG
Found at i:769842 original size:6 final size:6
Alignment explanation
Indices: 769831--769874 Score: 56
Period size: 6 Copynumber: 7.3 Consensus size: 6
769821 AAAAATTACT
769831 AAAATA AAAATA AAAATA AAAAT- AAAATA AATAA-A ATAAATA AA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AA-AATA A-AAATA AA
769875 CGAACGATTA
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
5 5 0.15
6 24 0.71
7 5 0.15
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (6 bp):
AAAATA
Found at i:769864 original size:9 final size:9
Alignment explanation
Indices: 769832--769874 Score: 54
Period size: 9 Copynumber: 4.8 Consensus size: 9
769822 AAAATTACTA
769832 AAATAAAAAT
1 AAAT-AAAAT
769842 AAA-AATAA-
1 AAATAA-AAT
769850 AAATAAAAT
1 AAATAAAAT
769859 AAATAAAAT
1 AAATAAAAT
769868 AAATAAA
1 AAATAAA
769875 CGAACGATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
8 7 0.23
9 20 0.67
10 3 0.10
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:769866 original size:32 final size:33
Alignment explanation
Indices: 769804--769870 Score: 84
Period size: 32 Copynumber: 2.1 Consensus size: 33
769794 TGTCAATTGC
* * *
769804 AAAATATAAATAAAGACAAAAATTACTAAAATA
1 AAAATAAAAATAAAGACAAAAATAAATAAAATA
769837 AAAATAAAAATAAA-A-ATAAAATAAATAAAATA
1 AAAATAAAAATAAAGACA-AAAATAAATAAAATA
769869 AA
1 AA
769871 TAAACGAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
31 1 0.03
32 16 0.53
33 13 0.43
ACGTcount: A:0.76, C:0.03, G:0.01, T:0.19
Consensus pattern (33 bp):
AAAATAAAAATAAAGACAAAAATAAATAAAATA
Found at i:771102 original size:14 final size:14
Alignment explanation
Indices: 771085--771143 Score: 57
Period size: 14 Copynumber: 4.1 Consensus size: 14
771075 AGAAAATGAA
771085 AATAAATAA-AGTAT
1 AATAAATAATA-TAT
771099 AATAAATAATATAT
1 AATAAATAATATAT
* *
771113 AATATTATACTATAT
1 AATA-AATAATATAT
*
771128 AATATATATATATAT
1 AATAAATA-ATATAT
771143 A
1 A
771144 TATATATATT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
14 20 0.51
15 19 0.49
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.39
Consensus pattern (14 bp):
AATAAATAATATAT
Found at i:771128 original size:2 final size:2
Alignment explanation
Indices: 771107--771152 Score: 62
Period size: 2 Copynumber: 24.0 Consensus size: 2
771097 ATAATAAATA
771107 AT AT AT A- AT AT -T AT ACT AT AT A- AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT
771147 AT AT AT
1 AT AT AT
771153 TTTAAAAAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
1 3 0.08
2 35 0.88
3 2 0.05
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:771128 original size:15 final size:15
Alignment explanation
Indices: 771096--771152 Score: 75
Period size: 14 Copynumber: 3.9 Consensus size: 15
771086 ATAAATAAAG
*
771096 TATAATAAATA-ATA
1 TATAATATATATATA
771110 TATAATAT-TATACTA
1 TATAATATATATA-TA
771125 TATAATATATATATA
1 TATAATATATATATA
771140 TAT-ATATATATAT
1 TATAATATATATAT
771153 TTTAAAAAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
13 2 0.05
14 18 0.46
15 15 0.38
16 4 0.10
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.46
Consensus pattern (15 bp):
TATAATATATATATA
Found at i:780837 original size:21 final size:21
Alignment explanation
Indices: 780811--780856 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
780801 TAAGTAAATT
780811 GCGAATTGGGAAAATCGCAAC
1 GCGAATTGGGAAAATCGCAAC
*
780832 GCGAATTGGGAAAATCGCAAT
1 GCGAATTGGGAAAATCGCAAC
780853 GCGA
1 GCGA
780857 TACTGACTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.37, C:0.17, G:0.30, T:0.15
Consensus pattern (21 bp):
GCGAATTGGGAAAATCGCAAC
Found at i:780870 original size:20 final size:20
Alignment explanation
Indices: 780845--780958 Score: 113
Period size: 20 Copynumber: 5.7 Consensus size: 20
780835 AATTGGGAAA
*
780845 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
780865 ATCGCAATGCGATACTTACT
1 ATCGCAACGCGATACTGACT
* * *
780885 ATCGCAATGCGATAAT-ACAAA
1 ATCGCAACGCGATACTGAC--T
*
780906 ATCGCAACGAGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
780926 TTCGCAACGCGATTCTGACT
1 ATCGCAACGCGATACTGACT
*
780946 TTCGCAACGCGAT
1 ATCGCAACGCGAT
780959 TTACATAGCG
Statistics
Matches: 81, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
19 2 0.02
20 64 0.79
21 13 0.16
22 2 0.02
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:780907 original size:61 final size:61
Alignment explanation
Indices: 780842--780958 Score: 162
Period size: 61 Copynumber: 1.9 Consensus size: 61
780832 GCGAATTGGG
* * * * *
780842 AAAATCGCAATGCGATACTGACTATCGCAATGCGATACTTACTATCGCAATGCGATAATAC
1 AAAATCGCAACGAGATACTGACTATCGCAACGCGATACTGACTATCGCAACGCGATAATAC
* * *
780903 AAAATCGCAACGAGATACTGACTTTCGCAACGCGATTCTGACTTTCGCAACGCGAT
1 AAAATCGCAACGAGATACTGACTATCGCAACGCGATACTGACTATCGCAACGCGAT
780959 TTACATAGCG
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
61 48 1.00
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (61 bp):
AAAATCGCAACGAGATACTGACTATCGCAACGCGATACTGACTATCGCAACGCGATAATAC
Found at i:781538 original size:20 final size:19
Alignment explanation
Indices: 781476--781543 Score: 64
Period size: 20 Copynumber: 3.5 Consensus size: 19
781466 TTCGAGAATG
* *
781476 AAAATCACAACGCGGAAATA
1 AAAATCGCAACGC-GAAACA
** *
781496 ACTATCGCAACGCGAAATA
1 AAAATCGCAACGCGAAACA
*
781515 AAAATTCGCAACGCGAAACC
1 AAAA-TCGCAACGCGAAACA
781535 AAAATCGCA
1 AAAATCGCA
781544 TTGCGATTTT
Statistics
Matches: 40, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
19 13 0.32
20 27 0.68
ACGTcount: A:0.49, C:0.25, G:0.15, T:0.12
Consensus pattern (19 bp):
AAAATCGCAACGCGAAACA
Found at i:781561 original size:19 final size:19
Alignment explanation
Indices: 781539--781689 Score: 168
Period size: 19 Copynumber: 8.1 Consensus size: 19
781529 GAAACCAAAA
*
781539 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
781558 TCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
*
781577 TCGCGTTGCGATTTTTATT
1 TCGCGTTGCGATTTTCATT
*
781596 TCGCAATTGCGATTTTCATT
1 TCGC-GTTGCGATTTTCATT
*
781616 TCGCGTTGCGATTGTC---
1 TCGCGTTGCGATTTTCATT
* **
781632 T-G-GTCGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
*
781649 TCGCGTTGCGATTCTCATT
1 TCGCGTTGCGATTTTCATT
*
781668 ATCTCGTTGCGATTTTCATT
1 -TCGCGTTGCGATTTTCATT
781688 TC
1 TC
781690 AACCAAAAGA
Statistics
Matches: 112, Mismatches: 13, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
14 10 0.09
15 1 0.01
16 1 0.01
17 1 0.01
18 1 0.01
19 64 0.57
20 34 0.30
ACGTcount: A:0.13, C:0.21, G:0.21, T:0.45
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:781617 original size:39 final size:38
Alignment explanation
Indices: 781539--781689 Score: 150
Period size: 39 Copynumber: 4.1 Consensus size: 38
781529 GAAACCAAAA
* *
781539 TCGCATTGCGATTTTCATTTCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATTTCGCATTGCGATTTTCATT
*
781577 TCGCGTTGCGATTTTTATTTCGCAATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATTTCGC-ATTGCGATTTTCATT
* * * **
781616 TCGCGTTGCGATTGTC---T-G-GTCGCGATAGTCATT
1 TCGCGTTGCGATTTTCATTTCGCATTGCGATTTTCATT
* * *
781649 TCGCGTTGCGATTCTCATTATCTCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT-TCGCATTGCGATTTTCATT
781688 TC
1 TC
781690 AACCAAAAGA
Statistics
Matches: 92, Mismatches: 14, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
33 26 0.28
35 1 0.01
36 1 0.01
37 1 0.01
38 21 0.23
39 42 0.46
ACGTcount: A:0.13, C:0.21, G:0.21, T:0.45
Consensus pattern (38 bp):
TCGCGTTGCGATTTTCATTTCGCATTGCGATTTTCATT
Found at i:783770 original size:21 final size:21
Alignment explanation
Indices: 783746--783812 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
783736 TCATTCCTCG
783746 AGAGTCCCCTCTCACCGTTCA
1 AGAGTCCCCTCTCACCGTTCA
* * * * *
783767 AGAGGCCACTGTCATCGTTGA
1 AGAGTCCCCTCTCACCGTTCA
* *
783788 AGAGGT-CCCTCCCACCATTCA
1 AGA-GTCCCCTCTCACCGTTCA
783809 AGAG
1 AGAG
783813 CCCGATTCAC
Statistics
Matches: 33, Mismatches: 12, Indels: 3
0.69 0.25 0.06
Matches are distributed among these distances:
20 1 0.03
21 31 0.94
22 1 0.03
ACGTcount: A:0.24, C:0.34, G:0.21, T:0.21
Consensus pattern (21 bp):
AGAGTCCCCTCTCACCGTTCA
Found at i:783770 original size:42 final size:42
Alignment explanation
Indices: 783690--783782 Score: 107
Period size: 42 Copynumber: 2.2 Consensus size: 42
783680 GCCCGACTCG
* *
783690 CCTATCATCCCTCAAGAGTCCACTCCTATCGTTGAAGAGGCC
1 CCTATCATCCCTCAAGAGTCCACTCCTACCGTTCAAGAGGCC
* * *
783732 CCTATCATTCCTCGAGAGTCCCCT-CTCACCGTTCAAGAGGCC
1 CCTATCATCCCTCAAGAGTCCACTCCT-ACCGTTCAAGAGGCC
* *
783774 ACTGTCATC
1 CCTATCATC
783783 GTTGAAGAGG
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
41 2 0.05
42 40 0.95
ACGTcount: A:0.22, C:0.38, G:0.16, T:0.25
Consensus pattern (42 bp):
CCTATCATCCCTCAAGAGTCCACTCCTACCGTTCAAGAGGCC
Found at i:785194 original size:14 final size:14
Alignment explanation
Indices: 785175--785210 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
785165 TTTGTTTAAT
785175 TGATTTGTAAAAGG
1 TGATTTGTAAAAGG
*
785189 TGATTTGTAAAAGT
1 TGATTTGTAAAAGG
785203 TGATTTGT
1 TGATTTGT
785211 TTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGG
Found at i:785341 original size:19 final size:19
Alignment explanation
Indices: 785317--785383 Score: 72
Period size: 19 Copynumber: 3.8 Consensus size: 19
785307 AAAAAGTACT
785317 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
**
785336 ATCGCAA--CG--A-GGGA
1 ATCGCAATGCGAAATGAAA
785350 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
785369 ATCGCAACGCGAAAT
1 ATCGCAATGCGAAAT
785384 TAAATTCGCG
Statistics
Matches: 38, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
14 9 0.24
15 1 0.03
16 2 0.05
17 2 0.05
18 1 0.03
19 23 0.61
ACGTcount: A:0.43, C:0.19, G:0.24, T:0.13
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:785410 original size:19 final size:19
Alignment explanation
Indices: 785388--785538 Score: 80
Period size: 19 Copynumber: 8.7 Consensus size: 19
785378 CGAAATTAAA
785388 TTCGCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
*
785407 TTCGCATTGCGA--TTC--
1 TTCGCGTTGCGATTTTCAT
* *
785422 -CCTCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
* *
785440 TTCGCATTGCGA-----AA
1 TTCGCGTTGCGATTTTCAT
*
785454 TTAGCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
*
785473 TTCGCATTGCGA--TTC--
1 TTCGCGTTGCGATTTTCAT
*
785488 -TCTCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
* ** *
785506 TTCGCATTGCGATAGTAAT
1 TTCGCGTTGCGATTTTCAT
785525 TTCCGCGTTGCGAT
1 TT-CGCGTTGCGAT
785539 GGACATTAAG
Statistics
Matches: 95, Mismatches: 21, Indels: 31
0.65 0.14 0.21
Matches are distributed among these distances:
14 28 0.29
16 6 0.06
17 6 0.06
19 45 0.47
20 10 0.11
ACGTcount: A:0.15, C:0.23, G:0.21, T:0.42
Consensus pattern (19 bp):
TTCGCGTTGCGATTTTCAT
Found at i:785434 original size:33 final size:32
Alignment explanation
Indices: 785392--785518 Score: 193
Period size: 33 Copynumber: 3.9 Consensus size: 32
785382 ATTAAATTCG
785392 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
1 CGTTGCGATTTTCATTTCGCATTGCGATT-CCT
**
785425 CGTTGCGATTTTCATTTCGCATTGCGAAATT-AG
1 CGTTGCGATTTTCATTTCGCATTGCG--ATTCCT
785458 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTC-CT
785491 CGTTGCGATTTTCATTTCGCATTGCGAT
1 CGTTGCGATTTTCATTTCGCATTGCGAT
785519 AGTAATTTCC
Statistics
Matches: 86, Mismatches: 4, Indels: 8
0.88 0.04 0.08
Matches are distributed among these distances:
31 3 0.03
33 80 0.93
35 3 0.03
ACGTcount: A:0.15, C:0.23, G:0.20, T:0.43
Consensus pattern (32 bp):
CGTTGCGATTTTCATTTCGCATTGCGATTCCT
Found at i:785475 original size:66 final size:66
Alignment explanation
Indices: 785385--785517 Score: 248
Period size: 66 Copynumber: 2.0 Consensus size: 66
785375 ACGCGAAATT
*
785385 AAATTCGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGC
1 AAATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGC
785450 G
66 G
*
785451 AAATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGC
1 AAATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGC
785516 G
66 G
785517 A
1 A
785518 TAGTAATTTC
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 65 1.00
ACGTcount: A:0.17, C:0.23, G:0.20, T:0.41
Consensus pattern (66 bp):
AAATTAGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGC
G
Found at i:787828 original size:12 final size:12
Alignment explanation
Indices: 787811--787835 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
787801 TCTTCGGAGA
787811 CTTTTTCTTCTT
1 CTTTTTCTTCTT
787823 CTTTTTCTTCTT
1 CTTTTTCTTCTT
787835 C
1 C
787836 AGGATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
CTTTTTCTTCTT
Found at i:789150 original size:20 final size:20
Alignment explanation
Indices: 789125--789182 Score: 89
Period size: 20 Copynumber: 2.9 Consensus size: 20
789115 ATTCATTTGA
*
789125 CTATCGCAACGCGAAAATGG
1 CTATCGCAACGAGAAAATGG
*
789145 CTATCGCAACGTGAAAATGG
1 CTATCGCAACGAGAAAATGG
*
789165 TTATCGCAACGAGAAAAT
1 CTATCGCAACGAGAAAAT
789183 CGCAATGCGA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.38, C:0.21, G:0.22, T:0.19
Consensus pattern (20 bp):
CTATCGCAACGAGAAAATGG
Found at i:789225 original size:14 final size:14
Alignment explanation
Indices: 789206--789259 Score: 54
Period size: 14 Copynumber: 3.5 Consensus size: 14
789196 GAAAATCGCA
789206 TTGCGATTTTCTCG
1 TTGCGATTTTCTCG
789220 TTGCGATTTTCATTTCG
1 TTGCGATTTTC---TCG
*
789237 CATTGCGATTTCCTCG
1 --TTGCGATTTTCTCG
789253 TTGCGAT
1 TTGCGAT
789260 AGCCATTTCG
Statistics
Matches: 34, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
14 18 0.53
16 3 0.09
17 3 0.09
19 10 0.29
ACGTcount: A:0.11, C:0.22, G:0.20, T:0.46
Consensus pattern (14 bp):
TTGCGATTTTCTCG
Found at i:789225 original size:33 final size:33
Alignment explanation
Indices: 789188--789258 Score: 79
Period size: 33 Copynumber: 2.2 Consensus size: 33
789178 AAAATCGCAA
*
789188 TGCGAAATGAAAATCGCATTGCGATTTTCTCGT
1 TGCGAAATGAAAATCGCATTGCGATTTCCTCGT
** ** **
789221 TGCGATTTTCATTTCGCATTGCGATTTCCTCGT
1 TGCGAAATGAAAATCGCATTGCGATTTCCTCGT
789254 TGCGA
1 TGCGA
789259 TAGCCATTTC
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.38
Consensus pattern (33 bp):
TGCGAAATGAAAATCGCATTGCGATTTCCTCGT
Found at i:789259 original size:33 final size:33
Alignment explanation
Indices: 789201--789278 Score: 111
Period size: 33 Copynumber: 2.4 Consensus size: 33
789191 GAAATGAAAA
* ***
789201 TCGCATTGCGATTTTCTCGTTGCGATTTTCATT
1 TCGCATTGCGATTTCCTCGTTGCGATAGCCATT
789234 TCGCATTGCGATTTCCTCGTTGCGATAGCCATT
1 TCGCATTGCGATTTCCTCGTTGCGATAGCCATT
*
789267 TCGCGTTGCGAT
1 TCGCATTGCGAT
789279 AGTCTGTTTT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 40 1.00
ACGTcount: A:0.13, C:0.24, G:0.22, T:0.41
Consensus pattern (33 bp):
TCGCATTGCGATTTCCTCGTTGCGATAGCCATT
Found at i:789385 original size:14 final size:14
Alignment explanation
Indices: 789366--789402 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
789356 CATCAATTAA
789366 ACAAATCAACATTT
1 ACAAATCAACATTT
* *
789380 ACAAATCATCTTTT
1 ACAAATCAACATTT
789394 ACAAATCAA
1 ACAAATCAA
789403 TTAAACAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACATTT
Found at i:791302 original size:20 final size:19
Alignment explanation
Indices: 791268--791333 Score: 87
Period size: 19 Copynumber: 3.4 Consensus size: 19
791258 AAACTTAAAT
791268 TCGCAACGCGAAATGACTA
1 TCGCAACGCGAAATGACTA
*
791287 TCGCAACGCGGAAATGGCTA
1 TCGCAACGC-GAAATGACTA
* **
791307 TCGCAATGCGAAATGAAAA
1 TCGCAACGCGAAATGACTA
791326 TCGCAACG
1 TCGCAACG
791334 ACAAAATCGC
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
19 23 0.57
20 17 0.43
ACGTcount: A:0.36, C:0.24, G:0.24, T:0.15
Consensus pattern (19 bp):
TCGCAACGCGAAATGACTA
Found at i:791341 original size:14 final size:14
Alignment explanation
Indices: 791322--791379 Score: 71
Period size: 14 Copynumber: 3.9 Consensus size: 14
791312 ATGCGAAATG
791322 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
791336 AAAATCGCAACGCGAA
1 AAAATCGCAA--CGAC
791352 ATGAAATCGCAACGAC
1 A--AAATCGCAACGAC
791368 AAAATCGCAACG
1 AAAATCGCAACG
791380 CGAAACACAA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 21 0.55
16 8 0.21
18 9 0.24
ACGTcount: A:0.48, C:0.26, G:0.17, T:0.09
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:791364 original size:32 final size:33
Alignment explanation
Indices: 791306--791384 Score: 142
Period size: 32 Copynumber: 2.4 Consensus size: 33
791296 GGAAATGGCT
*
791306 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
791339 ATCGCAACGCGAAATG-AAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
791371 ATCGCAACGCGAAA
1 ATCGCAACGCGAAA
791385 CACAAATCGC
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
32 30 0.67
33 15 0.33
ACGTcount: A:0.47, C:0.24, G:0.19, T:0.10
Consensus pattern (33 bp):
ATCGCAACGCGAAATGAAAATCGCAACGACAAA
Found at i:791413 original size:19 final size:17
Alignment explanation
Indices: 791391--791486 Score: 69
Period size: 19 Copynumber: 5.6 Consensus size: 17
791381 GAAACACAAA
791391 TCGCATTGCGATTTTCATT
1 TCGC-TTGCGA-TTTCATT
* *
791410 TCGCGTTACGATTT--TG
1 TCGC-TTGCGATTTCATT
791426 TCG-TTGCGATTTCATT
1 TCGCTTGCGATTTCATT
*
791442 TCGCGTTGCGATTT--TG
1 TCGC-TTGCGATTTCATT
791458 TCG-TTGCGATTTTCATT
1 TCGCTTGCGA-TTTCATT
791475 TCGCATTGCGAT
1 TCGC-TTGCGAT
791487 AGCCATTTCC
Statistics
Matches: 61, Mismatches: 7, Indels: 19
0.70 0.08 0.22
Matches are distributed among these distances:
14 14 0.23
15 3 0.05
16 12 0.20
17 4 0.07
18 13 0.21
19 15 0.25
ACGTcount: A:0.12, C:0.20, G:0.22, T:0.46
Consensus pattern (17 bp):
TCGCTTGCGATTTCATT
Found at i:791435 original size:14 final size:14
Alignment explanation
Indices: 791413--791470 Score: 62
Period size: 14 Copynumber: 3.9 Consensus size: 14
791403 TTTCATTTCG
*
791413 CGTTACGATTTTGT
1 CGTTGCGATTTTGT
*
791427 CGTTGCGATTTCATTT
1 CGTTGCGATTT--TGT
791443 CGCGTTGCGATTTTGT
1 --CGTTGCGATTTTGT
791459 CGTTGCGATTTT
1 CGTTGCGATTTT
791471 CATTTCGCAT
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
14 22 0.59
16 4 0.11
18 11 0.30
ACGTcount: A:0.10, C:0.17, G:0.24, T:0.48
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:791477 original size:33 final size:33
Alignment explanation
Indices: 791396--791486 Score: 157
Period size: 32 Copynumber: 2.8 Consensus size: 33
791386 ACAAATCGCA
*
791396 TTGCGATTTTCATTTCGCGTTACGATTTTGTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
791429 TTGCGA-TTTCATTTCGCGTTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
*
791461 TTGCGATTTTCATTTCGCATTGCGAT
1 TTGCGATTTTCATTTCGCGTTGCGAT
791487 AGCCATTTCC
Statistics
Matches: 55, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
32 31 0.56
33 24 0.44
ACGTcount: A:0.12, C:0.19, G:0.22, T:0.47
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
Found at i:791523 original size:20 final size:20
Alignment explanation
Indices: 791471--791514 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
791461 TTGCGATTTT
*
791471 CATTT-CGCATTGCGATAGC
1 CATTTCCGCGTTGCGATAGC
*
791490 CATTTCCGCGTTGCGATAGT
1 CATTTCCGCGTTGCGATAGC
791510 CATTT
1 CATTT
791515 TCGTGTTGCA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.18, C:0.25, G:0.20, T:0.36
Consensus pattern (20 bp):
CATTTCCGCGTTGCGATAGC
Found at i:792033 original size:18 final size:18
Alignment explanation
Indices: 792007--792051 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
791997 GTCGATAAGA
*
792007 TGATGGCTCTGGGTGAGG
1 TGATGGCTCTGGGCGAGG
*
792025 TGATAGCTCTGGGCGAGG
1 TGATGGCTCTGGGCGAGG
792043 TGATGGCTC
1 TGATGGCTC
792052 CCGAAGTGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.13, C:0.16, G:0.44, T:0.27
Consensus pattern (18 bp):
TGATGGCTCTGGGCGAGG
Found at i:793698 original size:22 final size:22
Alignment explanation
Indices: 793671--793714 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
793661 GATGGAGATA
*
793671 GACGGATTTTGCCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
*
793693 GACGGATTTCGTCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
793715 TGAGAGAGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.18, C:0.14, G:0.45, T:0.23
Consensus pattern (22 bp):
GACGGATTTCGCCGGAGATGGG
Found at i:793911 original size:20 final size:20
Alignment explanation
Indices: 793882--793933 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
793872 CGCTTTGAAA
* *
793882 ATCGCATTGCGAAAGTCAGT
1 ATCGCGTTGCGAAAGTAAGT
*
793902 ATCGCGTTGCAAAAGTAAGT
1 ATCGCGTTGCGAAAGTAAGT
*
793922 ATCTCGTTGCGA
1 ATCGCGTTGCGA
793934 TTTTTTATTA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (20 bp):
ATCGCGTTGCGAAAGTAAGT
Found at i:793968 original size:21 final size:20
Alignment explanation
Indices: 793944--793995 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
793934 TTTTTTATTA
*
793944 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGA-TTTACCAAT
* **
793965 TCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTACCAAT
793985 TCGCATTGCGA
1 TCGCATTGCGA
793996 ATTGGGAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 16 0.62
21 10 0.38
ACGTcount: A:0.17, C:0.25, G:0.19, T:0.38
Consensus pattern (20 bp):
TCGCATTGCGATTTACCAAT
Found at i:795681 original size:25 final size:25
Alignment explanation
Indices: 795653--795709 Score: 87
Period size: 25 Copynumber: 2.3 Consensus size: 25
795643 CATCGTCGTT
*
795653 CGTCGTAGAAAACTCGTTGAAACCC
1 CGTCGTAGAAAACTCGTCGAAACCC
*
795678 CGTCGTAGAAAGCTCGTCGAAACCC
1 CGTCGTAGAAAACTCGTCGAAACCC
*
795703 CGCCGTA
1 CGTCGTA
795710 AGATTTTCCT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.28, C:0.32, G:0.23, T:0.18
Consensus pattern (25 bp):
CGTCGTAGAAAACTCGTCGAAACCC
Found at i:798454 original size:12 final size:12
Alignment explanation
Indices: 798437--798461 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
798427 AAATCCAATA
798437 TTATACAAAAGT
1 TTATACAAAAGT
798449 TTATACAAAAGT
1 TTATACAAAAGT
798461 T
1 T
798462 CACAAAATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.08, G:0.08, T:0.36
Consensus pattern (12 bp):
TTATACAAAAGT
Found at i:800640 original size:23 final size:23
Alignment explanation
Indices: 800609--800661 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
800599 TAGCTCGTAT
* * *
800609 AAATACACCGAAGTGTCACATAG
1 AAATGCACCGAAATGCCACATAG
* *
800632 AAATGCACCGAAATGCCGCGTAG
1 AAATGCACCGAAATGCCACATAG
800655 AAATGCA
1 AAATGCA
800662 GTGAAGTGCC
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.42, C:0.23, G:0.21, T:0.15
Consensus pattern (23 bp):
AAATGCACCGAAATGCCACATAG
Found at i:815315 original size:21 final size:21
Alignment explanation
Indices: 815290--815330 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
815280 GCCTGAAATT
*
815290 GGATTTTGACTCGAAATAATA
1 GGATTTCGACTCGAAATAATA
* *
815311 GGATTTCGATTTGAAATAAT
1 GGATTTCGACTCGAAATAAT
815331 TGTGTTAGAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.37, C:0.07, G:0.20, T:0.37
Consensus pattern (21 bp):
GGATTTCGACTCGAAATAATA
Found at i:815668 original size:17 final size:16
Alignment explanation
Indices: 815622--815739 Score: 58
Period size: 17 Copynumber: 6.8 Consensus size: 16
815612 ATAAATAAAT
*
815622 AAAAACATAAAAATAAT
1 AAAAA-ATAAAAATAAG
*
815639 AATAAAATCAAAATAAG
1 AA-AAAATAAAAATAAG
* *
815656 AAAAAATAGAAAAAAAT
1 AAAAAATA-AAAATAAG
* *
815673 AAACACATAAAAATAAATC
1 AAA-AAATAAAAAT-AA-G
*
815692 AAAAAATAAAAAAAATG
1 AAAAAATAAAAATAA-G
*
815709 AGATAAAA-CAAAATAAAG
1 A-A-AAAATAAAAAT-AAG
815727 AATAAAATAAAAA
1 AA-AAAATAAAAA
815740 AAATATTAAA
Statistics
Matches: 78, Mismatches: 14, Indels: 17
0.72 0.13 0.16
Matches are distributed among these distances:
16 5 0.06
17 36 0.46
18 28 0.36
19 9 0.12
ACGTcount: A:0.76, C:0.05, G:0.04, T:0.14
Consensus pattern (16 bp):
AAAAAATAAAAATAAG
Found at i:815705 original size:8 final size:8
Alignment explanation
Indices: 815605--815705 Score: 67
Period size: 8 Copynumber: 12.0 Consensus size: 8
815595 AAATAAATGT
*
815605 TAAATAAA
1 TAAAAAAA
*
815613 TAAATAAA
1 TAAAAAAA
*
815621 TAAAAACA
1 TAAAAAAA
815629 TAAAAATAA
1 TAAAAA-AA
*
815638 TAATAAAA
1 TAAAAAAA
*
815646 TCAAAATAA
1 T-AAAAAAA
*
815655 GAAAAAATA
1 TAAAAAA-A
*
815664 GAAAAAAA
1 TAAAAAAA
* *
815672 TAAACACA
1 TAAAAAAA
815680 TAAAAATAAA
1 T-AAAA-AAA
*
815690 TCAAAAAA
1 TAAAAAAA
815698 TAAAAAAA
1 TAAAAAAA
815706 ATGAGATAAA
Statistics
Matches: 73, Mismatches: 15, Indels: 10
0.74 0.15 0.10
Matches are distributed among these distances:
8 45 0.62
9 25 0.34
10 3 0.04
ACGTcount: A:0.76, C:0.05, G:0.02, T:0.17
Consensus pattern (8 bp):
TAAAAAAA
Found at i:815722 original size:36 final size:33
Alignment explanation
Indices: 815614--815749 Score: 125
Period size: 36 Copynumber: 3.9 Consensus size: 33
815604 TTAAATAAAT
* *
815614 AAATAAATAAAAACATAAAAATAATAATAAAATCA
1 AAATAAAGAAAAA-ATAAAAAAAATAATAAAA-CA
815649 AAAT-AAGAAAAAATAGAAAAAAATAA-ACACATA-A
1 AAATAAAGAAAAAATA-AAAAAAATAATA-A-A-ACA
*
815683 AAATAAATCAAAAAATAAAAAAAATGAGATAAAACA
1 AAATAAA-GAAAAAATAAAAAAAAT-A-ATAAAACA
*
815719 AAATAAAGAATAAAATAAAAAAAATATTAAA
1 AAATAAAGAA-AAAATAAAAAAAATAATAAA
815750 TAAATCAAAG
Statistics
Matches: 85, Mismatches: 5, Indels: 23
0.75 0.04 0.20
Matches are distributed among these distances:
33 4 0.05
34 26 0.31
35 19 0.22
36 33 0.39
37 2 0.02
38 1 0.01
ACGTcount: A:0.76, C:0.04, G:0.04, T:0.16
Consensus pattern (33 bp):
AAATAAAGAAAAAATAAAAAAAATAATAAAACA
Found at i:815767 original size:71 final size:67
Alignment explanation
Indices: 815588--815768 Score: 170
Period size: 71 Copynumber: 2.6 Consensus size: 67
815578 GTTAATCAAG
* * *
815588 AAATAATAAATAAATGTTAAATAAATAAATAAATAAAAACATAAAAATAATAATAAAATCAAAAT
1 AAATAA-AAA-AAATATTAAATAAATAAA-AATTAAAAA-ATAAAAAAAATAATAAAATCAAAAT
815653 AAGAAA
62 AAGAAA
* *
815659 AAATAGAAAAAAATA-AACACATAAA-AATAAATCAAAAAATAAAAAAAATGAGATAAAA-CAAA
1 AAATA-AAAAAAATATTA-A-ATAAATAA-AAATTAAAAAATAAAAAAAAT-A-ATAAAATCAAA
815721 ATAAAGAATA
60 AT-AAGAA-A
*
815731 AAATAAAAAAAATATTAAATAAATCAAAGATTAAAAAA
1 AAATAAAAAAAATATTAAATAAAT-AAAAATTAAAAAA
815769 AGGGTTAGAT
Statistics
Matches: 91, Mismatches: 8, Indels: 22
0.75 0.07 0.18
Matches are distributed among these distances:
69 11 0.12
70 26 0.29
71 44 0.48
72 10 0.11
ACGTcount: A:0.73, C:0.04, G:0.04, T:0.19
Consensus pattern (67 bp):
AAATAAAAAAAATATTAAATAAATAAAAATTAAAAAATAAAAAAAATAATAAAATCAAAATAAGA
AA
Found at i:816338 original size:23 final size:23
Alignment explanation
Indices: 816307--816350 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
816297 ATAAAAAAAT
816307 TATTATCTAATGACAAATATTTAA
1 TATTATCTAATGA-AAATATTTAA
*
816331 TATT-TCTAATGATAATATTT
1 TATTATCTAATGAAAATATTT
816351 GTAATAACTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 7 0.37
23 8 0.42
24 4 0.21
ACGTcount: A:0.41, C:0.07, G:0.05, T:0.48
Consensus pattern (23 bp):
TATTATCTAATGAAAATATTTAA
Found at i:816621 original size:14 final size:14
Alignment explanation
Indices: 816601--816897 Score: 60
Period size: 14 Copynumber: 20.5 Consensus size: 14
816591 TATGTGATAA
*
816601 GGTTTAGGGTTTAG
1 GGTTTAGAGTTTAG
*
816615 AGTTTAGAGTTTA-
1 GGTTTAGAGTTTAG
* * *
816628 TGTGATATGA-TTTAA
1 GGT-TTA-GAGTTTAG
*
816643 GGTTTAGAGTTTAT
1 GGTTTAGAGTTTAG
*
816657 GGTTTAGAATTTAG
1 GGTTTAGAGTTTAG
* *
816671 AGTTTATGTAATAGGATTTAA
1 GGTTTA-G----A-G-TTTAG
816692 GGTTTAGAGTTTAG
1 GGTTTAGAGTTTAG
* *
816706 TGTTTATG-GTTTAA
1 GGTTTA-GAGTTTAG
*
816720 GGTTTAGA-TGTTAA
1 GGTTTAGAGT-TTAG
816734 GGTTTA-AGGTTTAG
1 GGTTTAGA-GTTTAG
* * *
816748 AGTTCAGAATTCATA-
1 GGTTTAGAGTT--TAG
**
816763 ATTTTAGAGTTTA-
1 GGTTTAGAGTTTAG
* *
816776 TGTTATATGA-TTTAA
1 GGTT-TA-GAGTTTAG
*
816791 GGTTTATAGTTTAG
1 GGTTTAGAGTTTAG
*
816805 GGTTTAGAGTTCAG
1 GGTTTAGAGTTTAG
*
816819 AGTTTTAGAGTTTA-
1 -GGTTTAGAGTTTAG
* * *
816833 TGTGATATGA-TTTAA
1 GGT-TTA-GAGTTTAG
*
816848 GGTTTATATGTTTTAG
1 GGTTTAGA-G-TTTAG
*
816864 GGTTTAGATGTTAAG
1 GGTTTAGA-GTTTAG
*
816879 GG-TTAGAGGTTA-
1 GGTTTAGAGTTTAG
816891 GGTTTAG
1 GGTTTAG
816898 TTATGACATA
Statistics
Matches: 208, Mismatches: 44, Indels: 63
0.66 0.14 0.20
Matches are distributed among these distances:
12 2 0.01
13 21 0.10
14 115 0.55
15 43 0.21
16 16 0.08
19 1 0.00
20 1 0.00
21 9 0.04
ACGTcount: A:0.27, C:0.01, G:0.27, T:0.45
Consensus pattern (14 bp):
GGTTTAGAGTTTAG
Found at i:816650 original size:28 final size:28
Alignment explanation
Indices: 816616--816853 Score: 117
Period size: 28 Copynumber: 9.2 Consensus size: 28
816606 AGGGTTTAGA
816616 GTTTAGAGTTTATGTGATATGATTTAAG
1 GTTTAGAGTTTATGTGATATGATTTAAG
**
816644 GTTTAGAGTTTATG-G-T-T--TAGAA-
1 GTTTAGAGTTTATGTGATATGATTTAAG
* *
816666 -TTTAGAGTTTATGTAATAGGATTTAAG
1 GTTTAGAGTTTATGTGATATGATTTAAG
* *
816693 GTTTAGAGTTTA-GTGTTTATGGTTTAAG
1 GTTTAGAGTTTATGTG-ATATGATTTAAG
* *
816721 GTTT--AG---ATGT--TAAGGTTTAAG
1 GTTTAGAGTTTATGTGATATGATTTAAG
* * *
816742 GTTTAGAGTTCA-G-AAT-TCA--TAA-
1 GTTTAGAGTTTATGTGATATGATTTAAG
* *
816764 TTTTAGAGTTTATGTTATATGATTTAAG
1 GTTTAGAGTTTATGTGATATGATTTAAG
* * * *
816792 GTTTATAGTTTA-G-GGTTTAGAGTTCAGAG
1 GTTTAGAGTTTATGTGATAT-GA-TTTA-AG
*
816821 TTTTAGAGTTTATGTGATATGATTTAAG
1 GTTTAGAGTTTATGTGATATGATTTAAG
816849 GTTTA
1 GTTTA
816854 TATGTTTTAG
Statistics
Matches: 153, Mismatches: 30, Indels: 54
0.65 0.13 0.23
Matches are distributed among these distances:
21 27 0.18
22 10 0.07
23 11 0.07
24 4 0.03
25 4 0.03
26 10 0.07
27 9 0.06
28 57 0.37
29 15 0.10
30 3 0.02
31 3 0.02
ACGTcount: A:0.28, C:0.01, G:0.24, T:0.46
Consensus pattern (28 bp):
GTTTAGAGTTTATGTGATATGATTTAAG
Found at i:816740 original size:21 final size:22
Alignment explanation
Indices: 816687--816748 Score: 85
Period size: 21 Copynumber: 2.9 Consensus size: 22
816677 TGTAATAGGA
816687 TTTAAGGTTT-AGAGTTTAG-TG
1 TTTAAGGTTTAAG-GTTTAGATG
*
816708 TTTATGGTTTAAGGTTTAGATG
1 TTTAAGGTTTAAGGTTTAGATG
816730 -TTAAGGTTTAAGGTTTAGA
1 TTTAAGGTTTAAGGTTTAGA
816749 GTTCAGAATT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
21 33 0.89
22 4 0.11
ACGTcount: A:0.26, C:0.00, G:0.27, T:0.47
Consensus pattern (22 bp):
TTTAAGGTTTAAGGTTTAGATG
Found at i:816809 original size:64 final size:58
Alignment explanation
Indices: 816730--816871 Score: 198
Period size: 57 Copynumber: 2.5 Consensus size: 58
816720 GGTTTAGATG
* * * * * *
816730 TTAAGGTTTA-AGGTTTAGAGTTCAGAATTCATAATTTTAGAGTTTATGTTATATGAT
1 TTAAGGTTTATATGTTTAGGGTTTAGAGTTCAGAATTTTAGAGTTTATGTGATATGAT
*
816787 TTAAGGTTTATA-GTTTAGGGTTTAGAGTTCAGAGTTTTAGAGTTTATGTGATATGAT
1 TTAAGGTTTATATGTTTAGGGTTTAGAGTTCAGAATTTTAGAGTTTATGTGATATGAT
816844 TTAAGGTTTATATGTTTTAGGGTTTAGA
1 TTAAGGTTTATATG-TTTAGGGTTTAGA
816872 TGTTAAGGGT
Statistics
Matches: 76, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
57 61 0.80
58 2 0.03
59 13 0.17
ACGTcount: A:0.28, C:0.02, G:0.23, T:0.46
Consensus pattern (58 bp):
TTAAGGTTTATATGTTTAGGGTTTAGAGTTCAGAATTTTAGAGTTTATGTGATATGAT
Found at i:816832 original size:7 final size:7
Alignment explanation
Indices: 816602--816832 Score: 69
Period size: 7 Copynumber: 32.7 Consensus size: 7
816592 ATGTGATAAG
*
816602 GTTTAGG
1 GTTTAGA
816609 GTTTAGA
1 GTTTAGA
816616 GTTTAGA
1 GTTTAGA
*
816623 GTTTA-T
1 GTTTAGA
*
816629 GTGATATGA
1 GT-TTA-GA
816638 -TTTA-A
1 GTTTAGA
816643 GGTTTAGA
1 -GTTTAGA
816651 GTTTATG-
1 GTTTA-GA
816658 GTTTAGA
1 GTTTAGA
*
816665 ATTTAGA
1 GTTTAGA
*
816672 GTTTA-T
1 GTTTAGA
*
816678 GTAATAG-
1 GT-TTAGA
816685 GATTTA-A
1 G-TTTAGA
816692 GGTTTAGA
1 -GTTTAGA
*
816700 GTTTAGT
1 GTTTAGA
816707 GTTTATG-
1 GTTTA-GA
816714 GTTTA-A
1 GTTTAGA
816720 GGTTTAGA
1 -GTTTAGA
*
816728 TGTTAAG-
1 -GTTTAGA
816735 GTTTA-A
1 GTTTAGA
816741 GGTTTAGA
1 -GTTTAGA
*
816749 GTTCAGA
1 GTTTAGA
*
816756 ATTCATA-A
1 GTT--TAGA
*
816764 TTTTAGA
1 GTTTAGA
*
816771 GTTTA-T
1 GTTTAGA
816777 GTTATATGA
1 GTT-TA-GA
816786 -TTTA-A
1 GTTTAGA
*
816791 GGTTTATA
1 -GTTTAGA
*
816799 GTTTAGG
1 GTTTAGA
816806 GTTTAGA
1 GTTTAGA
*
816813 GTTCAGA
1 GTTTAGA
816820 GTTTTAGA
1 G-TTTAGA
816828 GTTTA
1 GTTTA
816833 TGTGATATGA
Statistics
Matches: 167, Mismatches: 26, Indels: 62
0.65 0.10 0.24
Matches are distributed among these distances:
5 2 0.01
6 14 0.08
7 124 0.74
8 26 0.16
9 1 0.01
ACGTcount: A:0.28, C:0.01, G:0.25, T:0.46
Consensus pattern (7 bp):
GTTTAGA
Found at i:816862 original size:16 final size:16
Alignment explanation
Indices: 816837--816875 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
816827 AGTTTATGTG
*
816837 ATATGATTTAAGGTTT
1 ATATGTTTTAAGGTTT
*
816853 ATATGTTTTAGGGTTT
1 ATATGTTTTAAGGTTT
*
816869 AGATGTT
1 ATATGTT
816876 AAGGGTTAGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.26, C:0.00, G:0.23, T:0.51
Consensus pattern (16 bp):
ATATGTTTTAAGGTTT
Found at i:818765 original size:11 final size:11
Alignment explanation
Indices: 818749--818880 Score: 140
Period size: 11 Copynumber: 11.6 Consensus size: 11
818739 TAACCCATCC
818749 TCGAGCTT-AA
1 TCGAGCTTGAA
818759 GTCGAGCTTGAA
1 -TCGAGCTTGAA
**
818771 TCGAGCTCACAA
1 TCGAGCT-TGAA
818783 TCGAGCTTGAA
1 TCGAGCTTGAA
818794 TCGAGCTTGAA
1 TCGAGCTTGAA
**
818805 TCGAGCTCACAA
1 TCGAGCT-TGAA
818817 TCGAGCTTGAA
1 TCGAGCTTGAA
**
818828 TCGAGCTCACAA
1 TCGAGCT-TGAA
818840 TCGAGCTTGAA
1 TCGAGCTTGAA
**
818851 TCGAGCTCACAA
1 TCGAGCT-TGAA
818863 TCGAGCTTGAA
1 TCGAGCTTGAA
818874 TCGAGCT
1 TCGAGCT
818881 CAAAATCGAG
Statistics
Matches: 100, Mismatches: 16, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
11 62 0.62
12 38 0.38
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.23
Consensus pattern (11 bp):
TCGAGCTTGAA
Found at i:818798 original size:34 final size:34
Alignment explanation
Indices: 818749--818893 Score: 186
Period size: 34 Copynumber: 4.2 Consensus size: 34
818739 TAACCCATCC
818749 TCGAGCTT-AAGTCGAGCTTGAATCGAGCTCACAA
1 TCGAGCTTGAA-TCGAGCTTGAATCGAGCTCACAA
818783 TCGAGCTTGAATCGAGCTTGAATCGAGCTCACAA
1 TCGAGCTTGAATCGAGCTTGAATCGAGCTCACAA
** **
818817 TCGAGCTTGAATCGAGCTCACAATCGAGCT-TGAA
1 TCGAGCTTGAATCGAGCT-TGAATCGAGCTCACAA
** *
818851 TCGAGCTCACAATCGAGCTTGAATCGAGCTCAAAA
1 TCGAGCT-TGAATCGAGCTTGAATCGAGCTCACAA
818886 TCGAGCTT
1 TCGAGCTT
818894 CAATTGAACT
Statistics
Matches: 96, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
34 67 0.70
35 29 0.30
ACGTcount: A:0.30, C:0.24, G:0.23, T:0.23
Consensus pattern (34 bp):
TCGAGCTTGAATCGAGCTTGAATCGAGCTCACAA
Found at i:818818 original size:23 final size:23
Alignment explanation
Indices: 818792--818893 Score: 195
Period size: 23 Copynumber: 4.4 Consensus size: 23
818782 ATCGAGCTTG
818792 AATCGAGCTTGAATCGAGCTCAC
1 AATCGAGCTTGAATCGAGCTCAC
818815 AATCGAGCTTGAATCGAGCTCAC
1 AATCGAGCTTGAATCGAGCTCAC
818838 AATCGAGCTTGAATCGAGCTCAC
1 AATCGAGCTTGAATCGAGCTCAC
*
818861 AATCGAGCTTGAATCGAGCTCAA
1 AATCGAGCTTGAATCGAGCTCAC
818884 AATCGAGCTT
1 AATCGAGCTT
818894 CAATTGAACT
Statistics
Matches: 78, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
23 78 1.00
ACGTcount: A:0.31, C:0.25, G:0.22, T:0.23
Consensus pattern (23 bp):
AATCGAGCTTGAATCGAGCTCAC
Found at i:820960 original size:180 final size:181
Alignment explanation
Indices: 820657--821017 Score: 715
Period size: 180 Copynumber: 2.0 Consensus size: 181
820647 AAGATCCAAA
820657 TTTGCAACTATAGTTATGATTTCCAATCAAATTTACCATCAATTCTTGAATATATAATTGCAATA
1 TTTGCAACTATAGTTATGATTTCCAATCAAATTTACCATCAATTCTTGAATATATAATTGCAATA
820722 TTATCACTATACTCGCTAATTTGATTCTAAAGAGATTAGAAGTTCAAAAATTTCATAGAATATTT
66 TTATCACTATACTCGCTAATTTGATTCTAAAGAGATTAGAAGTTCAAAAATTTCATAGAATATTT
820787 GACTATTTTTCCAAGGAATGTTATTACTATTTATCAACCAATCCGTTCAAG
131 GACTATTTTTCCAAGGAATGTTATTACTATTTATCAACCAATCCGTTCAAG
820838 TTTGCAACTATAGTTATGATTTCCAATCAAATTTACCATCAATTCTTGAATATAT-ATTGCAATA
1 TTTGCAACTATAGTTATGATTTCCAATCAAATTTACCATCAATTCTTGAATATATAATTGCAATA
820902 TTATCACTATACTCGCTAATTTGATTCTAAAGAGATTAGAAGTTCAAAAATTTCATAGAATATTT
66 TTATCACTATACTCGCTAATTTGATTCTAAAGAGATTAGAAGTTCAAAAATTTCATAGAATATTT
820967 GACTATTTTTCCAAGGAATGTTATTACTATTTATCAACCAATCCGTTCAAG
131 GACTATTTTTCCAAGGAATGTTATTACTATTTATCAACCAATCCGTTCAAG
821018 GAATTGGTAA
Statistics
Matches: 180, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
180 125 0.69
181 55 0.31
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.39
Consensus pattern (181 bp):
TTTGCAACTATAGTTATGATTTCCAATCAAATTTACCATCAATTCTTGAATATATAATTGCAATA
TTATCACTATACTCGCTAATTTGATTCTAAAGAGATTAGAAGTTCAAAAATTTCATAGAATATTT
GACTATTTTTCCAAGGAATGTTATTACTATTTATCAACCAATCCGTTCAAG
Found at i:821528 original size:20 final size:19
Alignment explanation
Indices: 821505--821554 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 19
821495 CATGGAATGT
821505 AAGATTACCAGTAGGA-ATAA
1 AAGATTACCAG--GGAGATAA
*
821525 AAGATTATCAGGGAGATAA
1 AAGATTACCAGGGAGATAA
821544 AAGATTACCAG
1 AAGATTACCAG
821555 AGAATAGGAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
18 3 0.11
19 14 0.52
20 10 0.37
ACGTcount: A:0.48, C:0.10, G:0.22, T:0.20
Consensus pattern (19 bp):
AAGATTACCAGGGAGATAA
Found at i:821784 original size:37 final size:37
Alignment explanation
Indices: 821711--821785 Score: 98
Period size: 38 Copynumber: 2.0 Consensus size: 37
821701 GTTGAAAAAT
* *
821711 ATTTATATATTTTCTTTAAAAAATTTAAATTCATAAA
1 ATTTATATATTTTCTTTAAAAAATTGAAAATCATAAA
* *
821748 ATTTATATAATTTTTTTTACAAAATTGAAAAT-ATAAA
1 ATTTATAT-ATTTTCTTTAAAAAATTGAAAATCATAAA
821785 A
1 A
821786 AGGTTTAATA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
37 14 0.42
38 19 0.58
ACGTcount: A:0.48, C:0.04, G:0.01, T:0.47
Consensus pattern (37 bp):
ATTTATATATTTTCTTTAAAAAATTGAAAATCATAAA
Found at i:822166 original size:11 final size:11
Alignment explanation
Indices: 822150--822174 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
822140 TCCCCCAACC
822150 AAACACACCCT
1 AAACACACCCT
822161 AAACACACCCT
1 AAACACACCCT
822172 AAA
1 AAA
822175 AGGAAATTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.52, C:0.40, G:0.00, T:0.08
Consensus pattern (11 bp):
AAACACACCCT
Found at i:831067 original size:26 final size:26
Alignment explanation
Indices: 831031--831094 Score: 73
Period size: 26 Copynumber: 2.6 Consensus size: 26
831021 TTGGGTTTTG
* *
831031 TAATATTAATAAATAATATATAATAA
1 TAATAATAATAAATAATATAAAATAA
*
831057 TAATAATAATAAAT--TTTAAAATAA
1 TAATAATAATAAATAATATAAAATAA
831081 -AATAA-AATAAATAA
1 TAATAATAATAAATAA
831095 AAAAAATTGA
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
22 7 0.21
23 5 0.15
24 8 0.24
26 13 0.39
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (26 bp):
TAATAATAATAAATAATATAAAATAA
Found at i:831413 original size:121 final size:121
Alignment explanation
Indices: 831286--831509 Score: 306
Period size: 123 Copynumber: 1.8 Consensus size: 121
831276 GACCTATTTC
* * * * * * * *
831286 CTTCTGTGATAGAGTCATTCAAAAGGTTGAATAAG-TTCTTATTTTGAACTTCTTCTTTCTTTTT
1 CTTCTGTGATAGAATCATGCAAAAGGTTGAACAAGCTTCTCACTGTGAACTTCTTC-TTCCTCTT
* * *
831350 CAGATGAGTTCTTTTTATTATGAACTTTCTCTGGAAAGGTTTATGCTAATCTATCTG
65 CAAATAAGTTCTTCTTATTATGAACTTTCTCTGGAAAGGTTTATGCTAATCTATCTG
*
831407 CTTCTGTGATAGAATTATGCAAAAGGTTGAACAAGCTCTTCTCACTGTGAACTTCTTCTTCCTCT
1 CTTCTGTGATAGAATCATGCAAAAGGTTGAACAAG--CTTCTCACTGTGAACTTCTTCTTCCTCT
831472 TCAAATAAGTTCTTCTTATTATGAACTTTCTCTGGAAA
64 TCAAATAAGTTCTTCTTATTATGAACTTTCTCTGGAAA
831510 TGTTGATCCA
Statistics
Matches: 88, Mismatches: 12, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
121 31 0.35
123 40 0.45
124 17 0.19
ACGTcount: A:0.25, C:0.17, G:0.15, T:0.43
Consensus pattern (121 bp):
CTTCTGTGATAGAATCATGCAAAAGGTTGAACAAGCTTCTCACTGTGAACTTCTTCTTCCTCTTC
AAATAAGTTCTTCTTATTATGAACTTTCTCTGGAAAGGTTTATGCTAATCTATCTG
Found at i:831758 original size:116 final size:113
Alignment explanation
Indices: 831425--832170 Score: 989
Period size: 113 Copynumber: 6.7 Consensus size: 113
831415 ATAGAATTAT
** * * * * * *
831425 GCAAAAGGTTGAACAAGCTCTTCTCACTGTGAACTTCTTCTTCC-TCTTCAAATAAGTTCTTCTT
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
* * *
831489 ATTATGAACTTTCTCTGGAAATGTTGATCCATCAAGTGATGAATTTGA
66 ATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAGTGATGGATTTGA
* * * *
831537 ACAAAAGGTTAAACAAGTTCTTCTCATTATGAACTTT-TTCTTCCTTCTTCAGATGAATTCTTCT
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAA-TTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
****
831601 CATTATGAACTCGAACTGGAAAAGCTGATCCATCAAGTGATGGATTTGA
65 CATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAGTGATGGATTTGA
* *
831650 GCATAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTCCTTCAAGTAATGAGTTCTT
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTC-AG--ATGAGTTCTT
* *
831715 CTCATTATGAACTCTAC-CTGGAAAAGCTGATCCATCAAATGATGGATTTGA
63 CTCATTATGAACT-TTCTCTGGAAAAGCTGATCCATCAAGTGATGGATTTGA
831766 GCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTTCCTTCTTCAGATGAGTTCTTCT
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTC-TTCCTTCTTCAGATGAGTTCTTCT
* *
831831 CATTATGAACTTTCTCTGGCAAAGCTAATCCATCAAGTGATGGATTTGA
65 CATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAGTGATGGATTTGA
*
831880 GCAAAAGGTTGAACAAATTC-T-TCATTATGAATTTCTTCTTTCTTCTTCAGATGAGTTC-T-T-
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
* *
831940 ATTATGAACTTTCTCTGGCAAAGCTAATCCATCAAGTGATGGATTTGA
66 ATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAGTGATGGATTTGA
*
831988 GCAAAAGG-TGAACAAATTCTTCTCATTATGAA--T-TTCTTCCTTCTTCAGATGAGTTCTTCTT
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
* * * **
832049 ATTATGAACTTTCTCTGGCAAAGCTGATCCATCAAATGATGAATTCAA
66 ATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAGTGATGGATTTGA
* * * *
832097 GCAAAA-GTTGAACAAGTTCTTCTTATTATGAACTTCTTATT-CTCTCTTCAGATGAGTTCTTCT
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCT-TCTTCAGATGAGTTCTTCT
832160 CATTATGAACT
65 CATTATGAACT
832171 CTAACTGACA
Statistics
Matches: 571, Mismatches: 44, Indels: 38
0.87 0.07 0.06
Matches are distributed among these distances:
106 22 0.04
107 13 0.02
108 59 0.10
109 82 0.14
110 1 0.00
111 22 0.04
112 88 0.15
113 103 0.18
114 76 0.13
116 96 0.17
117 9 0.02
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.38
Consensus pattern (113 bp):
GCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
ATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAGTGATGGATTTGA
Done.