genome.fa.s8422.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008422.1 Hibiscus syriacus cultivar Beakdansim tig00111203_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70002

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2344--2445	3	34.3	3	85	9	138	33	2	0	63	1.09
3443--3485	20	2.2	20	79	4	52	27	4	2	65	1.25
11432--11601	75	2.3	75	84	6	220	34	14	19	32	1.91
13702--14059	45	8.0	45	89	1	522	22	24	21	32	1.98
15010--15223	107	2.0	107	91	1	349	32	12	28	26	1.93
16004--16028	2	12.5	2	100	0	50	48	0	0	52	1.00
19166--19355	82	2.3	83	85	2	258	28	21	16	33	1.95
19208--19388	82	2.2	82	80	8	190	30	19	14	34	1.92
20185--20280	42	2.3	41	80	7	104	31	16	17	34	1.93
23147--23261	59	2.0	58	94	1	203	30	16	15	37	1.90
24703--24898	99	2.0	99	97	0	374	34	4	20	41	1.71
27590--27641	21	2.5	21	81	3	61	38	19	25	17	1.93
27630--27743	20	5.7	20	80	6	95	33	25	16	24	1.96
28286--28470	19	10.1	19	75	14	165	11	22	22	43	1.86
28286--28375	39	2.3	38	94	1	153	10	21	23	45	1.81
28358--28445	33	2.6	33	92	1	140	11	25	25	38	1.89
28413--28470	20	2.9	20	77	10	55	15	24	17	43	1.87
30529--30595	21	3.2	21	66	6	55	23	35	20	19	1.95
30473--30595	42	2.9	42	80	4	115	23	36	17	22	1.94
31954--31980	14	1.9	14	100	0	54	37	0	25	37	1.57
32097--32173	33	2.3	34	82	6	95	18	20	20	40	1.92
32120--32174	19	3.2	19	70	24	66	14	21	18	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35738--35775	20	1.9	20	88	0	58	36	23	23	15	1.94
35794--35861	19	3.8	19	87	12	101	13	22	17	47	1.82
35856--35893	20	1.9	20	88	0	58	15	18	26	39	1.91
35979--36015	14	2.6	14	86	0	56	48	21	0	29	1.50
37883--37949	19	3.5	19	83	4	89	37	23	23	14	1.93
37938--37995	14	3.9	14	75	16	62	48	22	17	12	1.80
37922--38000	32	2.4	33	91	2	133	46	21	18	12	1.82
38029--38086	14	3.9	14	79	16	71	10	17	24	48	1.78
38012--38102	32	2.8	33	94	3	166	12	18	21	47	1.81
38087--38141	20	2.8	19	83	8	65	16	23	23	36	1.94
38623--38667	18	2.5	18	88	0	72	13	15	44	26	1.83
39987--40024	20	1.9	20	88	0	58	50	21	15	13	1.78
40287--40330	22	2.0	22	95	0	79	18	15	45	20	1.85
40518--40570	20	2.7	20	93	0	88	24	18	28	28	1.98
40581--40673	20	4.6	20	78	4	96	17	24	18	39	1.91
40563--40673	41	2.7	41	94	4	188	17	22	18	42	1.89
46031--46076	19	2.3	20	88	3	67	47	4	13	34	1.62
48683--48737	2	27.5	2	100	0	110	49	0	0	50	1.00
52576--52720	51	2.8	51	86	8	195	49	13	10	26	1.73
52576--52720	52	2.8	51	87	8	195	49	13	10	26	1.73
54627--54671	24	1.9	23	86	4	63	57	2	0	40	1.11
54692--54789	31	3.2	31	87	9	139	47	6	2	43	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54756--54846	37	2.4	37	85	8	114	43	8	3	43	1.51
54755--54873	37	3.2	37	79	11	102	43	9	4	42	1.56
55960--56021	26	2.4	26	81	7	72	41	8	12	37	1.73
57024--57063	21	1.9	21	94	0	71	37	5	15	42	1.68
58542--58581	19	2.1	20	86	9	57	25	7	2	65	1.32
59032--59081	14	3.5	14	78	13	57	22	4	6	68	1.29
59405--59706	136	2.2	139	87	2	423	31	11	12	44	1.79
59405--59865	136	3.3	136	80	7	401	30	13	13	43	1.82
60378--60426	18	2.6	19	77	6	55	42	2	8	46	1.45
61106--61130	12	2.1	12	100	0	50	32	24	20	24	1.98

Tables:   1

The End!