Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008424.1 Hibiscus syriacus cultivar Beakdansim tig00111207_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4198033
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 6 of 16
Found at i:1232645 original size:2 final size:2
Alignment explanation
Indices: 1232638--1232670 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
1232628 CTATTTAATA
1232638 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1232671 ATTTCAGTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1251339 original size:3 final size:3
Alignment explanation
Indices: 1251331--1251386 Score: 64
Period size: 3 Copynumber: 18.7 Consensus size: 3
1251321 TCGTCCCGTT
1251331 TTA TTA TTA TTA TTA TTA TTA -TA TTA CTTA -TA TTTA TTTA TTA TT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA -TTA -TTA TTA TTA
1251376 TTA TTA TTA TT
1 TTA TTA TTA TT
1251387 TATGCAGGCT
Statistics
Matches: 48, Mismatches: 0, Indels: 10
0.83 0.00 0.17
Matches are distributed among these distances:
2 6 0.12
3 33 0.69
4 9 0.19
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:1251374 original size:22 final size:22
Alignment explanation
Indices: 1251332--1251389 Score: 77
Period size: 22 Copynumber: 2.7 Consensus size: 22
1251322 CGTCCCGTTT
1251332 TATTATTATTA-TTA-TTATTA
1 TATTATTATTATTTATTTATTA
1251352 TATTACTTA-TATTTATTTATTA
1 TATTA-TTATTATTTATTTATTA
*
1251374 TTTTATTATTATTTAT
1 TATTATTATTATTTAT
1251390 GCAGGCTATT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
20 7 0.21
21 9 0.27
22 17 0.52
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (22 bp):
TATTATTATTATTTATTTATTA
Found at i:1255520 original size:20 final size:20
Alignment explanation
Indices: 1255491--1255544 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
1255481 TCATAGAACT
1255491 GGTCTGAGTCAACTCGAATC
1 GGTCTGAGTCAACTCGAATC
*
1255511 GGTCTAAGTCAACTCGAATC
1 GGTCTGAGTCAACTCGAATC
1255531 GGTCTGAGTCAACT
1 GGTCTGAGTCAACT
1255545 TGGATCAAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (20 bp):
GGTCTGAGTCAACTCGAATC
Found at i:1255597 original size:20 final size:20
Alignment explanation
Indices: 1255554--1255597 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
1255544 TTGGATCAAA
* *
1255554 CTGAGTCAACCCGAACCGAC
1 CTGAGTCAACCCAAACCAAC
* *
1255574 CTGAGTTAACCCAAACCAAT
1 CTGAGTCAACCCAAACCAAC
1255594 CTGA
1 CTGA
1255598 CCTGTTGACC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.34, C:0.34, G:0.16, T:0.16
Consensus pattern (20 bp):
CTGAGTCAACCCAAACCAAC
Found at i:1265202 original size:21 final size:21
Alignment explanation
Indices: 1265176--1265258 Score: 87
Period size: 21 Copynumber: 3.9 Consensus size: 21
1265166 ACCAGAACTC
* *
1265176 CAGGGGGTATCGATTCCCCTA
1 CAGGGGGAATCGATTCCCTTA
1265197 CAGGGGGAATCGATTCCCATTCA
1 CAGGGGGAATCGATTCCC-TT-A
* *
1265220 AAGGGGGAATCGGTTCCCTTA
1 CAGGGGGAATCGATTCCCTTA
* *
1265241 -TGGGGGTATCGATTCCCT
1 CAGGGGGAATCGATTCCCT
1265259 CTGCCAAATA
Statistics
Matches: 53, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
20 15 0.28
21 18 0.34
22 3 0.06
23 17 0.32
ACGTcount: A:0.20, C:0.24, G:0.30, T:0.25
Consensus pattern (21 bp):
CAGGGGGAATCGATTCCCTTA
Found at i:1270601 original size:18 final size:18
Alignment explanation
Indices: 1270578--1270622 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
1270568 AAGAGATATA
**
1270578 AATGATAATAATTCTAAT
1 AATGATAATAATAATAAT
*
1270596 AATGATAAGAATAATAAT
1 AATGATAATAATAATAAT
*
1270614 AAGGATAAT
1 AATGATAAT
1270623 GAAATGATAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.56, C:0.02, G:0.11, T:0.31
Consensus pattern (18 bp):
AATGATAATAATAATAAT
Found at i:1274391 original size:18 final size:17
Alignment explanation
Indices: 1274363--1274401 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
1274353 GGACATATGT
*
1274363 GATATGTGGTCTTTCAG
1 GATATGTGGTCCTTCAG
*
1274380 GATATAGTGGTCCTTCGG
1 GATAT-GTGGTCCTTCAG
1274398 GATA
1 GATA
1274402 AATTCTAAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 5 0.26
18 14 0.74
ACGTcount: A:0.21, C:0.13, G:0.31, T:0.36
Consensus pattern (17 bp):
GATATGTGGTCCTTCAG
Found at i:1275092 original size:16 final size:17
Alignment explanation
Indices: 1275065--1275097 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
1275055 TTTTTAGTCA
1275065 CTTTGTAAAAGTAAATG
1 CTTTGTAAAAGTAAATG
*
1275082 CTTTG-AAAAGTTAATG
1 CTTTGTAAAAGTAAATG
1275098 TGACATCTCG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.39, C:0.06, G:0.18, T:0.36
Consensus pattern (17 bp):
CTTTGTAAAAGTAAATG
Found at i:1278701 original size:139 final size:139
Alignment explanation
Indices: 1278362--1278766 Score: 421
Period size: 139 Copynumber: 2.9 Consensus size: 139
1278352 TTGAATTGTC
* * * * * * **
1278362 AAAATGAAACCTCGAGCATAAGCGATGACCAAATAAAAAATTCCCCT-AAGTCAAAGGACT-AGT
1 AAAATGAAACCTCGAGCAAAAGAGAGGACCAAATAAAATATTCACCTAAAGT-TAAGGACTAAAA
* * ** * * *
1278425 TATGAAAGTAAACCTAAAAACAGAGGCTTTAATTATTAACCTAATTATTTTAAACCAATTATTTG
65 T-TGAAATTAAGCCT-AAAGTAGAGGCTCTAATTATTAACCTAATTAATTTAAACCAATTATGTG
1278490 ATTCGAATAATT
128 ATTCGAATAATT
1278502 AAAATGAAACCTCGAGCAAAAGAGAGGACCAAATAAAATATTCACCTAAAGTTAAGGACT-AAA-
1 AAAATGAAACCTCGAGCAAAAGAGAGGACCAAATAAAATATTCACCTAAAGTTAAGGACTAAAAT
* *
1278565 TGAGGAATTAAGCCTAAAGTAGAGGCTCTAATTGTTAACCTAATTAATTTCAACCAATTATGTGA
66 TGA--AATTAAGCCTAAAGTAGAGGCTCTAATTATTAACCTAATTAATTTAAACCAATTATGTGA
1278630 TTC-AAGTAATT
129 TTCGAA-TAATT
* ** * * *
1278641 AAAATGGAACCTCGAGCAAAATCGAGGACCAAATTAAGAAT-TT-GCCTAAATTTAATGACTAAA
1 AAAATGAAACCTCGAGCAAAAGAGAGGACCAAA-TAA-AATATTCACCTAAAGTTAAGGACTAAA
* * * * *
1278704 ATTGAAATTACGCCTAAAGTGGAGGCTCTAA-TATTAATCCTGATTAATTTTAATCAATTATGT
64 ATTGAAATTAAGCCTAAAGTAGAGGCTCTAATTATTAA-CCTAATTAATTTAAACCAATTATGT
1278767 AATTATTCAT
Statistics
Matches: 227, Mismatches: 29, Indels: 19
0.83 0.11 0.07
Matches are distributed among these distances:
138 10 0.04
139 141 0.62
140 66 0.29
141 10 0.04
ACGTcount: A:0.43, C:0.15, G:0.14, T:0.28
Consensus pattern (139 bp):
AAAATGAAACCTCGAGCAAAAGAGAGGACCAAATAAAATATTCACCTAAAGTTAAGGACTAAAAT
TGAAATTAAGCCTAAAGTAGAGGCTCTAATTATTAACCTAATTAATTTAAACCAATTATGTGATT
CGAATAATT
Found at i:1278833 original size:13 final size:13
Alignment explanation
Indices: 1278815--1278839 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1278805 AAAAGGAATC
1278815 TAAATTTAAAGAG
1 TAAATTTAAAGAG
1278828 TAAATTTAAAGA
1 TAAATTTAAAGA
1278840 TATGGTAACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.12, T:0.32
Consensus pattern (13 bp):
TAAATTTAAAGAG
Found at i:1281085 original size:2 final size:2
Alignment explanation
Indices: 1281074--1281110 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
1281064 CATTGTATTG
1281074 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1281111 CAATACAATT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:1283036 original size:261 final size:261
Alignment explanation
Indices: 1282572--1283093 Score: 1008
Period size: 261 Copynumber: 2.0 Consensus size: 261
1282562 CTCTTCTCAT
1282572 GAACCCTTAATTGCAAGTTACTATAACAAGAATTGTTCAGTTCCTTAATAGGCTCCTTTAAACTC
1 GAACCCTTAATTGCAAGTTACTATAACAAGAATTGTTCAGTTCCTTAATAGGCTCCTTTAAACTC
1282637 TTAAGCTTCTGAAAAAGTCTAGATAACGGATCCCCAAAACCCATATCAGCCCAAGATTCAACCAT
66 TTAAGCTTCTGAAAAAGTCTAGATAACGGATCCCCAAAACCCATATCAGCCCAAGATTCAACCAT
*
1282702 AATTGCCATAAACCCTAGATGATCAACCCAATAATTGAAGTACCTAAATGGATTAGGACCAGGAG
131 AATTGCCACAAACCCTAGATGATCAACCCAATAATTGAAGTACCTAAATGGATTAGGACCAGGAG
*
1282767 ACCAAGAGATAACATCATATCCCAAAACAATTTTAGATTACGACATGCAGCGAGAAAAACTTTGT
196 ACCAAGAGATAACATCATATCCCAAAACAATTTTAGATTACAACATGCAGCGAGAAAAACTTTGT
1282832 A
261 A
1282833 GAACCCTTAATTGCAAGTTACTATAACAAGAATTGTTCAGTTCCTTAATAGGCTCCTTTAAACTC
1 GAACCCTTAATTGCAAGTTACTATAACAAGAATTGTTCAGTTCCTTAATAGGCTCCTTTAAACTC
1282898 TTAAGCTTCTGAAAAAGTCTAGATAACGGATCCCCAAAACCCATATCAGCCCAAGATTCAACCAT
66 TTAAGCTTCTGAAAAAGTCTAGATAACGGATCCCCAAAACCCATATCAGCCCAAGATTCAACCAT
* *
1282963 AGTTGCCACAAACCCTAGATGATCAACCCAATAATTGAAGTACCTAAATGTATTAGGACCAGGAG
131 AATTGCCACAAACCCTAGATGATCAACCCAATAATTGAAGTACCTAAATGGATTAGGACCAGGAG
1283028 ACCAAGAGATAACATCATATCCCAAAACAATTTTAGATTACAACATGCAGCGAGAAAAACTTTGT
196 ACCAAGAGATAACATCATATCCCAAAACAATTTTAGATTACAACATGCAGCGAGAAAAACTTTGT
1283093 A
261 A
1283094 TATTCCAATA
Statistics
Matches: 257, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
261 257 1.00
ACGTcount: A:0.39, C:0.22, G:0.14, T:0.25
Consensus pattern (261 bp):
GAACCCTTAATTGCAAGTTACTATAACAAGAATTGTTCAGTTCCTTAATAGGCTCCTTTAAACTC
TTAAGCTTCTGAAAAAGTCTAGATAACGGATCCCCAAAACCCATATCAGCCCAAGATTCAACCAT
AATTGCCACAAACCCTAGATGATCAACCCAATAATTGAAGTACCTAAATGGATTAGGACCAGGAG
ACCAAGAGATAACATCATATCCCAAAACAATTTTAGATTACAACATGCAGCGAGAAAAACTTTGT
A
Found at i:1283872 original size:17 final size:17
Alignment explanation
Indices: 1283852--1283886 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
1283842 TTGACTCTTT
1283852 TGAATCACATGAAACAA
1 TGAATCACATGAAACAA
1283869 TGAATCACATGAAACAA
1 TGAATCACATGAAACAA
1283886 T
1 T
1283887 ATATACAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.51, C:0.17, G:0.11, T:0.20
Consensus pattern (17 bp):
TGAATCACATGAAACAA
Found at i:1294762 original size:18 final size:18
Alignment explanation
Indices: 1294727--1294762 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
1294717 GTTGTAGTTT
*
1294727 CTTATCATGGTAAATTAA
1 CTTATCATGATAAATTAA
*
1294745 CTTATCATGATAAGTTAA
1 CTTATCATGATAAATTAA
1294763 GTTGAAGTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.39
Consensus pattern (18 bp):
CTTATCATGATAAATTAA
Found at i:1298897 original size:24 final size:23
Alignment explanation
Indices: 1298848--1298899 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 23
1298838 ATGGAAGTGA
* *
1298848 TTTTTGCCTTTATCAAACTCTTC
1 TTTTTCCCTTTACCAAACTCTTC
1298871 TTTTTCCCTTTACCAAACTCTTC
1 TTTTTCCCTTTACCAAACTCTTC
*
1298894 CTTTTC
1 TTTTTC
1298900 ATATTGGTGG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.15, C:0.31, G:0.02, T:0.52
Consensus pattern (23 bp):
TTTTTCCCTTTACCAAACTCTTC
Found at i:1307121 original size:21 final size:20
Alignment explanation
Indices: 1307082--1307123 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
1307072 ACCAAATTCC
*
1307082 TGTATTTAAATTTACTATAA
1 TGTATTTAAATTGACTATAA
*
1307102 TGTATTTAGAATTGATTATAA
1 TGTATTTA-AATTGACTATAA
1307123 T
1 T
1307124 TAATTGATCA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.38, C:0.02, G:0.10, T:0.50
Consensus pattern (20 bp):
TGTATTTAAATTGACTATAA
Found at i:1325203 original size:28 final size:28
Alignment explanation
Indices: 1325171--1325235 Score: 76
Period size: 28 Copynumber: 2.3 Consensus size: 28
1325161 ATTTAAACCA
*
1325171 CTGAGTTAAATCCTCTGAGTCAACTCGT
1 CTGAGTCAAATCCTCTGAGTCAACTCGT
* * * *
1325199 CTGAGTCAACTCTTTTGAGTCAACTCTT
1 CTGAGTCAAATCCTCTGAGTCAACTCGT
*
1325227 TTGAGTCAA
1 CTGAGTCAA
1325236 CACGTCCGAG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (28 bp):
CTGAGTCAAATCCTCTGAGTCAACTCGT
Found at i:1325236 original size:14 final size:14
Alignment explanation
Indices: 1325186--1325236 Score: 84
Period size: 14 Copynumber: 3.6 Consensus size: 14
1325176 TTAAATCCTC
* *
1325186 TGAGTCAACTCGTC
1 TGAGTCAACTCTTT
1325200 TGAGTCAACTCTTT
1 TGAGTCAACTCTTT
1325214 TGAGTCAACTCTTT
1 TGAGTCAACTCTTT
1325228 TGAGTCAAC
1 TGAGTCAAC
1325237 ACGTCCGAGT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 35 1.00
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.35
Consensus pattern (14 bp):
TGAGTCAACTCTTT
Found at i:1325246 original size:28 final size:28
Alignment explanation
Indices: 1325187--1325250 Score: 74
Period size: 28 Copynumber: 2.3 Consensus size: 28
1325177 TAAATCCTCT
* * **
1325187 GAGTCAACTCGTCTGAGTCAACTCTTTT
1 GAGTCAACTCGTCTGAGTCAACACGTCC
* *
1325215 GAGTCAACTCTTTTGAGTCAACACGTCC
1 GAGTCAACTCGTCTGAGTCAACACGTCC
1325243 GAGTCAAC
1 GAGTCAAC
1325251 CCGTTGACGT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.30
Consensus pattern (28 bp):
GAGTCAACTCGTCTGAGTCAACACGTCC
Found at i:1326625 original size:21 final size:21
Alignment explanation
Indices: 1326595--1326635 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
1326585 CTTTAAAAAT
* * *
1326595 AAAAATAAAATAAGAACTTTG
1 AAAAAGAAAAGAAAAACTTTG
1326616 AAAAAGAAAAGAAAAACTTT
1 AAAAAGAAAAGAAAAACTTT
1326636 TATTAAAAAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.66, C:0.05, G:0.10, T:0.20
Consensus pattern (21 bp):
AAAAAGAAAAGAAAAACTTTG
Found at i:1327094 original size:15 final size:16
Alignment explanation
Indices: 1327076--1327105 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
1327066 ACAGAAAATG
1327076 AATCAA-AACAAAAAA
1 AATCAACAACAAAAAA
1327091 AATCAACAACAAAAA
1 AATCAACAACAAAAA
1327106 CCAATGATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.77, C:0.17, G:0.00, T:0.07
Consensus pattern (16 bp):
AATCAACAACAAAAAA
Found at i:1328981 original size:6 final size:6
Alignment explanation
Indices: 1328966--1329031 Score: 53
Period size: 6 Copynumber: 10.3 Consensus size: 6
1328956 AAAATCAAAG
* * *
1328966 AAAAAT -AAAAT AAAAAAT AAAATT GAAAAT AAAAAT AAAAATT GAACAAACA
1 AAAAAT AAAAAT -AAAAAT AAAAAT AAAAAT AAAAAT AAAAA-T -AA-AAA-T
1329018 AAAAAT AAAAAT AA
1 AAAAAT AAAAAT AA
1329032 TAATTGGTTG
Statistics
Matches: 48, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
5 5 0.10
6 27 0.56
7 9 0.19
8 4 0.08
9 3 0.06
ACGTcount: A:0.77, C:0.03, G:0.03, T:0.17
Consensus pattern (6 bp):
AAAAAT
Found at i:1328996 original size:19 final size:20
Alignment explanation
Indices: 1328972--1329027 Score: 71
Period size: 19 Copynumber: 2.8 Consensus size: 20
1328962 AAAGAAAAAT
1328972 AAAATAAAAAATAAAATTG-
1 AAAATAAAAAATAAAATTGA
1328991 AAAAT-AAAAATAAAAATTGA
1 AAAATAAAAAAT-AAAATTGA
*
1329011 ACAAACAAAAAATAAAA
1 A-AAATAAAAAATAAAA
1329028 ATAATAATTG
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
18 6 0.19
19 12 0.38
20 1 0.03
21 7 0.22
22 6 0.19
ACGTcount: A:0.77, C:0.04, G:0.04, T:0.16
Consensus pattern (20 bp):
AAAATAAAAAATAAAATTGA
Found at i:1329024 original size:22 final size:19
Alignment explanation
Indices: 1328972--1329029 Score: 64
Period size: 22 Copynumber: 2.9 Consensus size: 19
1328962 AAAGAAAAAT
1328972 AAAATAAAAAAT-AAAATTG
1 AAAA-AAAAAATAAAAATTG
*
1328991 AAAATAAAAATAAAAATTG
1 AAAAAAAAAATAAAAATTG
1329010 AACAAACAAAAAATAAAAAT
1 -A-AAA-AAAAAATAAAAAT
1329030 AATAATTGGT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
18 6 0.18
19 11 0.33
20 1 0.03
21 3 0.09
22 12 0.36
ACGTcount: A:0.76, C:0.03, G:0.03, T:0.17
Consensus pattern (19 bp):
AAAAAAAAAATAAAAATTG
Found at i:1339280 original size:91 final size:90
Alignment explanation
Indices: 1339161--1339646 Score: 652
Period size: 91 Copynumber: 5.3 Consensus size: 90
1339151 CTCACGAGCT
* * *
1339161 AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCATTGGAGGAGTTCTTCTCATTAT
1 AAGGTTGAACAAGTTATTCTCATTATGAACTTCTTCTCCCTCATCGGATGAGTTCTTCTCATTAT
*
1339226 GAACTCTCTACTGGAAATGTTGAGCC
66 GAACTCTC-ACTGGAAATGTTGATCC
* **
1339252 AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTTGTCGGATGAGTTCTTCTCATTAT
1 AAGGTTGAACAAGTTATTCTCATTATGAACTTCTTCTCCCTCATCGGATGAGTTCTTCTCATTAT
* *
1339317 GAACTCCCCACTGGAAATGTTGATCA
66 GAACT-CTCACTGGAAATGTTGATCC
* * * ** *
1339343 AAGGTTCTAA-AATTTATTCTCATTATGAACTTCTTCTCCTTTTTCAGATGAGTTCTTCTCATTA
1 AAGGTT-GAACAAGTTATTCTCATTATGAACTTCTTCTCCCTCATCGGATGAGTTCTTCTCATTA
* *
1339407 TGAGCTCTACACTGGAAATTTTGATCC
65 TGAACTCT-CACTGGAAATGTTGATCC
*
1339434 AAGGTTGAACAAGTTATTCTCATTATGAACTTCTTCTCCCTCGTCGGATGAGTTCTTCTCATTAT
1 AAGGTTGAACAAGTTATTCTCATTATGAACTTCTTCTCCCTCATCGGATGAGTTCTTCTCATTAT
* **
1339499 AAACTCTTCACTTTAAATGTTGATCC
66 GAACTC-TCACTGGAAATGTTGATCC
* * *
1339525 AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCATCAGACGAGTTCTTCTCATTAT
1 AAGGTTGAACAAGTTATTCTCATTATGAACTTCTTCTCCCTCATCGGATGAGTTCTTCTCATTAT
* * *
1339590 GAACT-TCCCGTTGTAAATGTTGATTC
66 GAACTCTCAC--TGGAAATGTTGATCC
1339616 AAGGTTGAACAAGTTATTCTCATTATGAACT
1 AAGGTTGAACAAGTTATTCTCATTATGAACT
1339647 CTCCGTTGGA
Statistics
Matches: 351, Mismatches: 37, Indels: 14
0.87 0.09 0.03
Matches are distributed among these distances:
89 3 0.01
90 3 0.01
91 340 0.97
92 5 0.01
ACGTcount: A:0.25, C:0.21, G:0.15, T:0.38
Consensus pattern (90 bp):
AAGGTTGAACAAGTTATTCTCATTATGAACTTCTTCTCCCTCATCGGATGAGTTCTTCTCATTAT
GAACTCTCACTGGAAATGTTGATCC
Found at i:1339671 original size:52 final size:52
Alignment explanation
Indices: 1339575--1339700 Score: 173
Period size: 52 Copynumber: 2.4 Consensus size: 52
1339565 TCATCAGACG
* * *
1339575 AGTTCTTCTCATTATGAACTTCCCGTTGTAAATGTTGATTCAAGGTTGAACA
1 AGTTCTTCTCATTATGAACTTCCCGTTGGAAATGTTGATCCAAGGGTGAACA
* ** *
1339627 AGTTATTCTCATTATGAAC-TCTCCGTTGGATTTGTTTATCCAAGGGTGAACA
1 AGTTCTTCTCATTATGAACTTC-CCGTTGGAAATGTTGATCCAAGGGTGAACA
1339679 AGTTCTTCTCATTATGAACTTC
1 AGTTCTTCTCATTATGAACTTC
1339701 TTCTCCTTCG
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
51 2 0.03
52 60 0.94
53 2 0.03
ACGTcount: A:0.25, C:0.18, G:0.17, T:0.40
Consensus pattern (52 bp):
AGTTCTTCTCATTATGAACTTCCCGTTGGAAATGTTGATCCAAGGGTGAACA
Found at i:1339686 original size:143 final size:143
Alignment explanation
Indices: 1339516--1339789 Score: 424
Period size: 143 Copynumber: 1.9 Consensus size: 143
1339506 TCACTTTAAA
*
1339516 TGTTGATCCAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCATCAGACGAGTTCT
1 TGTTGATCCAAGGGTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCATCAGACGAGTTCT
* * * *
1339581 TCTCATTATGAACTTCCCGTTGTAAATGTTGAT-TCAAGGTTGAACAAGTTATTCTCATTATGAA
66 TCTCATTATGAACTCCCCGCTGGAAATGTTGATCT-AAGGTCGAACAAGTTATTCTCATTATGAA
1339645 CTCTCCGTTGGATT
130 CTCTCCGTTGGATT
* * * * *
1339659 TGTTTATCCAAGGGTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCTTCGTCGGATGAGTTCT
1 TGTTGATCCAAGGGTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCATCAGACGAGTTCT
* *
1339724 TCTCATTTTGAACTCCCCGCTGGAAATGTTGATCTACGGTCGAACAAGTTATTCTCATTATGAAC
66 TCTCATTATGAACTCCCCGCTGGAAATGTTGATCTAAGGTCGAACAAGTTATTCTCATTATGAAC
1339789 T
131 T
1339790 TCTTCTCCCT
Statistics
Matches: 118, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
143 117 0.99
144 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.17, T:0.38
Consensus pattern (143 bp):
TGTTGATCCAAGGGTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCATCAGACGAGTTCT
TCTCATTATGAACTCCCCGCTGGAAATGTTGATCTAAGGTCGAACAAGTTATTCTCATTATGAAC
TCTCCGTTGGATT
Found at i:1339690 original size:234 final size:234
Alignment explanation
Indices: 1339430--1339878 Score: 691
Period size: 234 Copynumber: 1.9 Consensus size: 234
1339420 GGAAATTTTG
*
1339430 ATCCAAGGTTGAACAAGTTATTCTCATTATGAACTTCTTCTCCCTCGTCGGATGAGTTCTTCTCA
1 ATCCAAGGGTGAACAAGTTATTCTCATTATGAACTTCTTCTCCCTCGTCGGATGAGTTCTTCTCA
** ** * *
1339495 TTATAAACTCTTCACTTTAAATGTTGATCCAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTT
66 TTATAAACTCCCCACTGGAAATGTTGATCCAAGGTCGAACAAGTTATTCTCATTATGAACTTCTT
* * ** * *
1339560 CTCCCTCATCAGACGAGTTCTTCTCATTATGAACTTCCCGTTGTAAATGTTGATTCAAGGTTGAA
131 CTCCCTCAGCAGACGAGTTCTTCTCATTATGAACTCCCCACTGGAAATGTTGATCCAAGGTTGAA
1339625 CAAGTTATTCTCATTATGAACTCTCCGTTGGATTTGTTT
196 CAAGTTATTCTCATTATGAACTCTCCGTTGGATTTGTTT
* *
1339664 ATCCAAGGGTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCTTCGTCGGATGAGTTCTTCTCA
1 ATCCAAGGGTGAACAAGTTATTCTCATTATGAACTTCTTCTCCCTCGTCGGATGAGTTCTTCTCA
* * * * *
1339729 TTTTGAACTCCCCGCTGGAAATGTTGATCTACGGTCGAACAAGTTATTCTCATTATGAACTTCTT
66 TTATAAACTCCCCACTGGAAATGTTGATCCAAGGTCGAACAAGTTATTCTCATTATGAACTTCTT
* *
1339794 CTCCCTCGGCGGACGAGTTCTTCTCATTATGAACTCCCCACTGGAAATGTTGATCCAAGGTTGAA
131 CTCCCTCAGCAGACGAGTTCTTCTCATTATGAACTCCCCACTGGAAATGTTGATCCAAGGTTGAA
*
1339859 CAAGTTCTTCTCATTATGAA
196 CAAGTTATTCTCATTATGAA
1339879 TTTCTTCTCC
Statistics
Matches: 192, Mismatches: 23, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
234 192 1.00
ACGTcount: A:0.24, C:0.23, G:0.16, T:0.37
Consensus pattern (234 bp):
ATCCAAGGGTGAACAAGTTATTCTCATTATGAACTTCTTCTCCCTCGTCGGATGAGTTCTTCTCA
TTATAAACTCCCCACTGGAAATGTTGATCCAAGGTCGAACAAGTTATTCTCATTATGAACTTCTT
CTCCCTCAGCAGACGAGTTCTTCTCATTATGAACTCCCCACTGGAAATGTTGATCCAAGGTTGAA
CAAGTTATTCTCATTATGAACTCTCCGTTGGATTTGTTT
Found at i:1339701 original size:325 final size:324
Alignment explanation
Indices: 1339359--1339970 Score: 954
Period size: 325 Copynumber: 1.9 Consensus size: 324
1339349 CTAAAATTTA
** * *
1339359 TTCTCATTATGAACTTCTTCTCCTTTTTCAGATGAGTTCTTCTCATTATGAGCTCTACACTGGAA
1 TTCTCATTATGAACTTCTTCTCCTTCGTCAGATGAGTTCTTCTCATTATGAACTCCACACTGGAA
* * * *
1339424 ATTTTGATCCAAGGTTGAACAAGTTATTCTCATTATGAACTTCTTCTCCCTCGTCGGATGAGTTC
66 ATGTTGATCCAAGGTCGAACAAGTTATTCTCATTATGAACTTCTTCTCCCTCGGCGGACGAGTTC
** **
1339489 TTCTCATTATAAACTCTTCACTTTAAATGTTGATCCAAGGTTGAACAAGTTCTTCTCATTATGAA
131 TTCTCATTATAAACTCCCCACTGGAAATGTTGATCCAAGGTTGAACAAGTTCTTCTCATTATGAA
* * * *
1339554 CTTCTTCTCCCTCATCAGACGAGTTCTTCTCATTATGAACTTCCCGTTGTAAATGTTGATTCAAG
196 CTTCTTCTCCCTCATCAGACGAGTTCTTCTCATTATGAAC-TCCCGCTGCAAATATTGATCCAAG
1339619 GTTGAACAAGTTATTCTCATTATGAACTCTCCGTTGGATTTGTTTATCCAAGGGTGAACAAGTTC
260 GTTGAACAAGTTATTCTCATTATGAACTCTCCGTTGGATTTGTTTATCCAAGGGTGAACAAGTTC
* * * *
1339684 TTCTCATTATGAACTTCTTCTCCTTCGTCGGATGAGTTCTTCTCATTTTGAACTCCCCGCTGGAA
1 TTCTCATTATGAACTTCTTCTCCTTCGTCAGATGAGTTCTTCTCATTATGAACTCCACACTGGAA
* *
1339749 ATGTTGATCTACGGTCGAACAAGTTATTCTCATTATGAACTTCTTCTCCCTCGGCGGACGAGTTC
66 ATGTTGATCCAAGGTCGAACAAGTTATTCTCATTATGAACTTCTTCTCCCTCGGCGGACGAGTTC
*
1339814 TTCTCATTATGAACTCCCCACTGGAAATGTTGATCCAAGGTTGAACAAGTTCTTCTCATTATGAA
131 TTCTCATTATAAACTCCCCACTGGAAATGTTGATCCAAGGTTGAACAAGTTCTTCTCATTATGAA
* * * * *
1339879 TTTCTTCTCCCTCGTCGGATGAGTTCTTCTCATTTTGAACTCCCGCTGCAAATATTGATCCAAGG
196 CTTCTTCTCCCTCATCAGACGAGTTCTTCTCATTATGAACTCCCGCTGCAAATATTGATCCAAGG
*
1339944 TTGAACAAGTTCTTCTCATTATGAACT
261 TTGAACAAGTTATTCTCATTATGAACT
1339971 TCTTATCCCT
Statistics
Matches: 258, Mismatches: 29, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
324 47 0.18
325 211 0.82
ACGTcount: A:0.24, C:0.23, G:0.16, T:0.38
Consensus pattern (324 bp):
TTCTCATTATGAACTTCTTCTCCTTCGTCAGATGAGTTCTTCTCATTATGAACTCCACACTGGAA
ATGTTGATCCAAGGTCGAACAAGTTATTCTCATTATGAACTTCTTCTCCCTCGGCGGACGAGTTC
TTCTCATTATAAACTCCCCACTGGAAATGTTGATCCAAGGTTGAACAAGTTCTTCTCATTATGAA
CTTCTTCTCCCTCATCAGACGAGTTCTTCTCATTATGAACTCCCGCTGCAAATATTGATCCAAGG
TTGAACAAGTTATTCTCATTATGAACTCTCCGTTGGATTTGTTTATCCAAGGGTGAACAAGTTC
Found at i:1339787 original size:91 final size:91
Alignment explanation
Indices: 1339627--1340028 Score: 581
Period size: 91 Copynumber: 4.4 Consensus size: 91
1339617 AGGTTGAACA
* * * ** * *
1339627 AGTTATTCTCATTATGAACTCTCCGTTGGATTTGTTTATCCAAGGGTGAACAAGTTCTTCTCATT
1 AGTTCTTCTCATTATGAACTCCCCGCTGGAAATGTTGATCCAAGGTTGAACAAGTTCTTCTCATT
*
1339692 ATGAACTTCTTCTCCTTCGTCGGATG
66 ATGAACTTCTTCTCCCTCGTCGGATG
* * * * *
1339718 AGTTCTTCTCATTTTGAACTCCCCGCTGGAAATGTTGATCTACGGTCGAACAAGTTATTCTCATT
1 AGTTCTTCTCATTATGAACTCCCCGCTGGAAATGTTGATCCAAGGTTGAACAAGTTCTTCTCATT
* *
1339783 ATGAACTTCTTCTCCCTCGGCGGACG
66 ATGAACTTCTTCTCCCTCGTCGGATG
*
1339809 AGTTCTTCTCATTATGAACTCCCCACTGGAAATGTTGATCCAAGGTTGAACAAGTTCTTCTCATT
1 AGTTCTTCTCATTATGAACTCCCCGCTGGAAATGTTGATCCAAGGTTGAACAAGTTCTTCTCATT
*
1339874 ATGAATTTCTTCTCCCTCGTCGGATG
66 ATGAACTTCTTCTCCCTCGTCGGATG
* * *
1339900 AGTTCTTCTCATTTTGAACT-CCCGCTGCAAATATTGATCCAAGGTTGAACAAGTTCTTCTCATT
1 AGTTCTTCTCATTATGAACTCCCCGCTGGAAATGTTGATCCAAGGTTGAACAAGTTCTTCTCATT
* *
1339964 ATGAACTTCTTATCCCTCATCGGATG
66 ATGAACTTCTTCTCCCTCGTCGGATG
* *
1339990 AGTTCTTCTCGTTATGAACTCCTCGCTGGAAATGTTGAT
1 AGTTCTTCTCATTATGAACTCCCCGCTGGAAATGTTGAT
1340029 TGGTTTATCC
Statistics
Matches: 274, Mismatches: 36, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
90 82 0.30
91 192 0.70
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (91 bp):
AGTTCTTCTCATTATGAACTCCCCGCTGGAAATGTTGATCCAAGGTTGAACAAGTTCTTCTCATT
ATGAACTTCTTCTCCCTCGTCGGATG
Found at i:1342009 original size:19 final size:17
Alignment explanation
Indices: 1341976--1342130 Score: 109
Period size: 17 Copynumber: 8.5 Consensus size: 17
1341966 CCTTTCAAAA
1341976 TTTCTT-TTCTTTTCTTT
1 TTTCTTCTT-TTTTCTTT
1341993 TTTCTCTCATTTTTTC-TT
1 TTTCT-TC-TTTTTTCTTT
* **
1342011 TTTCTTCTCTTCCCTTT
1 TTTCTTCTTTTTTCTTT
*
1342028 TTTCTTCTTTTTTGTTT
1 TTTCTTCTTTTTTCTTT
1342045 TTTCTTCTTTTTGT-TGTCT
1 TTTCTTCTTTTT-TCT-T-T
1342064 TTTCTCTCTTTTTTTCCTTT
1 TTTCT-TC-TTTTTT-CTTT
*
1342084 TTTTTTCTTTTTTCAATTT
1 TTTCTTCTTTTTTC--TTT
*
1342103 TTTTTTCTTTTTTTCATTT
1 TTTCTTC-TTTTTTC-TTT
*
1342122 TTTTTTCTT
1 TTTCTTCTT
1342131 CTCTCCTCTT
Statistics
Matches: 116, Mismatches: 8, Indels: 27
0.77 0.05 0.18
Matches are distributed among these distances:
16 4 0.03
17 36 0.31
18 18 0.16
19 34 0.29
20 17 0.15
21 6 0.05
22 1 0.01
ACGTcount: A:0.03, C:0.18, G:0.02, T:0.77
Consensus pattern (17 bp):
TTTCTTCTTTTTTCTTT
Found at i:1342064 original size:28 final size:26
Alignment explanation
Indices: 1342024--1342116 Score: 71
Period size: 29 Copynumber: 3.3 Consensus size: 26
1342014 CTTCTCTTCC
*
1342024 CTTTTTTCT-TCTTTTTTGTTTTTTCTT
1 CTTTTTT-TGTCTTTTTTATTTTTT-TT
* *
1342051 CTTTTTGTTGTCTTTTCTCTCTTTTTTTC
1 CTTTTT-TTGTCTTTT-T-TATTTTTTTT
*
1342080 CTTTTTTTTTCTTTTTTCAATTTTTTTTT
1 CTTTTTTTGTCTTTTTT--A-TTTTTTTT
1342109 CTTTTTTT
1 CTTTTTTT
1342117 CATTTTTTTT
Statistics
Matches: 54, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
26 1 0.02
27 8 0.15
28 15 0.28
29 23 0.43
30 7 0.13
ACGTcount: A:0.02, C:0.15, G:0.03, T:0.80
Consensus pattern (26 bp):
CTTTTTTTGTCTTTTTTATTTTTTTT
Found at i:1342095 original size:10 final size:10
Alignment explanation
Indices: 1341976--1342130 Score: 79
Period size: 10 Copynumber: 15.6 Consensus size: 10
1341966 CCTTTCAAAA
*
1341976 TTTCTTTTCT
1 TTTCTTTTTT
1341986 TTTC-TTTTT
1 TTTCTTTTTT
* **
1341995 TCTCTCATTT
1 TTTCTTTTTT
1342005 TTTCTTTTTCT
1 TTTCTTTTT-T
* *
1342016 TCTCTTCCCTTT
1 TTTCTT--TTTT
*
1342028 TTTCTTCTTT
1 TTTCTTTTTT
*
1342038 TTTGTTTTTT
1 TTTCTTTTTT
*
1342048 CTTCTTTTTGT
1 TTTCTTTTT-T
* *
1342059 TGTC-TTTTC
1 TTTCTTTTTT
*
1342068 TCTC-TTTTT
1 TTTCTTTTTT
*
1342077 TTCCTTTTTT
1 TTTCTTTTTT
1342087 TTTC-TTTTT
1 TTTCTTTTTT
***
1342096 TCAATTTTTT
1 TTTCTTTTTT
1342106 TTTC--TTTT
1 TTTCTTTTTT
1342114 TTTCATTTTTT
1 TTTC-TTTTTT
1342125 TTTCTT
1 TTTCTT
1342131 CTCTCCTCTT
Statistics
Matches: 107, Mismatches: 28, Indels: 20
0.69 0.18 0.13
Matches are distributed among these distances:
8 8 0.07
9 22 0.21
10 52 0.49
11 17 0.16
12 6 0.06
13 2 0.02
ACGTcount: A:0.03, C:0.18, G:0.02, T:0.77
Consensus pattern (10 bp):
TTTCTTTTTT
Found at i:1347058 original size:28 final size:28
Alignment explanation
Indices: 1347027--1347080 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
1347017 TGTATGTACT
*
1347027 ATGTAGAGCATCTATGTATGTATAATTC
1 ATGTAGAACATCTATGTATGTATAATTC
* *
1347055 ATGTAGAATATGTATGTATGTATAAT
1 ATGTAGAACATCTATGTATGTATAAT
1347081 GTATGCATGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.35, C:0.06, G:0.19, T:0.41
Consensus pattern (28 bp):
ATGTAGAACATCTATGTATGTATAATTC
Found at i:1347808 original size:13 final size:14
Alignment explanation
Indices: 1347772--1347807 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
1347762 TCAAAACTTC
*
1347772 ATTTTCTTTATTTTA
1 ATTTT-TTTCTTTTA
1347787 ATTTTTTTCTTTTA
1 ATTTTTTTCTTTTA
1347801 ATTTTTT
1 ATTTTTT
1347808 CCGCCCAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 15 0.75
15 5 0.25
ACGTcount: A:0.17, C:0.06, G:0.00, T:0.78
Consensus pattern (14 bp):
ATTTTTTTCTTTTA
Found at i:1349451 original size:2 final size:2
Alignment explanation
Indices: 1349444--1349483 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
1349434 AACTTAGTGA
1349444 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1349484 TATGTTAAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1350061 original size:43 final size:43
Alignment explanation
Indices: 1349999--1350336 Score: 315
Period size: 43 Copynumber: 7.9 Consensus size: 43
1349989 GCTAAAGTTT
* *
1349999 GCGGCATTTGTGAATAAAAACTGCTGCAATAGGTGTTGATATTTA
1 GCGGCGTTTGT-AATAAAAAC-GCCGCAATAGGTGTTGATATTTA
* *
1350044 GCGGCGTTTG-AAAAAAAACGCCGCAATAGGTTTTGATATTTA
1 GCGGCGTTTGTAATAAAAACGCCGCAATAGGTGTTGATATTTA
* * * *
1350086 GCGGCGTTTGTATTAAAAACGCCTCAACAGTTGTTGATATTTA
1 GCGGCGTTTGTAATAAAAACGCCGCAATAGGTGTTGATATTTA
* * * *
1350129 GCGGCGTTTGTATTACAAACACCGCAATAGGTTTTGATATTTA
1 GCGGCGTTTGTAATAAAAACGCCGCAATAGGTGTTGATATTTA
* *
1350172 GTGGCGTTTGTAATAAAAACGCCGCAATAGGTGTTGATGTTTA
1 GCGGCGTTTGTAATAAAAACGCCGCAATAGGTGTTGATATTTA
* ** * * * *
1350215 GCGGCGTTTTTTCTACAAACGCCGTAGT-GGTTGTTGAGATTTA
1 GCGGCGTTTGTAATAAAAACGCCGCAATAGG-TGTTGATATTTA
* * * * *
1350258 GCGGCGTTT-T-ATCACATACACCGCAATAAGTGTTGAGATTTA
1 GCGGCGTTTGTAAT-AAAAACGCCGCAATAGGTGTTGATATTTA
* * * *** *
1350300 GTGGCATTTTTCCCACAAACGCCGCAATAGGTGTTGA
1 GCGGCGTTTGTAATAAAAACGCCGCAATAGGTGTTGA
1350337 GCTTTAGTGG
Statistics
Matches: 243, Mismatches: 44, Indels: 14
0.81 0.15 0.05
Matches are distributed among these distances:
41 1 0.00
42 63 0.26
43 170 0.70
45 9 0.04
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.33
Consensus pattern (43 bp):
GCGGCGTTTGTAATAAAAACGCCGCAATAGGTGTTGATATTTA
Found at i:1350388 original size:128 final size:126
Alignment explanation
Indices: 1350024--1350395 Score: 297
Period size: 128 Copynumber: 2.9 Consensus size: 126
1350014 AAAAACTGCT
* * * * * * *
1350024 GCAATAGGTGTTGATATTTAGCGGCGTTTG-AAAAAAAACGCCGCAATAGGTTTTGATATTTAGC
1 GCAATAAGTGTTGAGATTTAGTGGCATTTGTAACAAAAACGCCGCAATAGGTGTTGATGTTTAGC
* * * * * * *
1350088 GGCGTTTGTAT-TAAAAACGCC-TCAACAG-TTGTTGATATTTAGCGGCGTTTGTATTACAAACA
66 GGCATTT-TTTCTACAAACACCGT-AA-AGATCGCTGATA--TAGCGGCGTTT-TATCACAAACA
1350150 CC
125 CC
* * * * *
1350152 GCAATAGGTTTTGATATTTAGTGGCGTTTGTAATAAAAACGCCGCAATAGGTGTTGATGTTTAGC
1 GCAATAAGTGTTGAGATTTAGTGGCATTTGTAACAAAAACGCCGCAATAGGTGTTGATGTTTAGC
* * ** * * * * *
1350217 GGCGTTTTTTCTACAAACGCCGTAGTGGTTGTTGAGATTTAGCGGCGTTTTATCACATACACC
66 GGCATTTTTTCTACAAACACCGTAAAGATCGCT--GATATAGCGGCGTTTTATCACAAACACC
* ** *
1350280 GCAATAAGTGTTGAGATTTAGTGGCATTTTTCCCACAAACGCCGCAATAGGTGTTGA-GCTTTAG
1 GCAATAAGTGTTGAGATTTAGTGGCATTTGTAACAAAAACGCCGCAATAGGTGTTGATG-TTTAG
*
1350344 TGGCATTTTTTCATACAAACACCGTAAAAAGATCGCT-ATATAGCGGCGTTTT
65 CGGCATTTTTTC-TACAAACACCGT--AAAGATCGCTGATATAGCGGCGTTTT
1350396 TAGGATACAA
Statistics
Matches: 204, Mismatches: 30, Indels: 20
0.80 0.12 0.08
Matches are distributed among these distances:
127 1 0.00
128 119 0.58
129 75 0.37
130 1 0.00
131 8 0.04
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.33
Consensus pattern (126 bp):
GCAATAAGTGTTGAGATTTAGTGGCATTTGTAACAAAAACGCCGCAATAGGTGTTGATGTTTAGC
GGCATTTTTTCTACAAACACCGTAAAGATCGCTGATATAGCGGCGTTTTATCACAAACACC
Found at i:1357212 original size:42 final size:42
Alignment explanation
Indices: 1356889--1357201 Score: 403
Period size: 42 Copynumber: 7.5 Consensus size: 42
1356879 TGGCGTTTGA
* ** *
1356889 GCTATATTACGACTCTATTACGGTATTTGAGTTATAAACGCC
1 GCTATATTACTACTCTATTACGGCGTTTGAGCTATAAACGCC
* * * **
1356931 GATATATTACTAACT-TATTGCGGCATTTGAGCTATAAACATC
1 GCTATATTACT-ACTCTATTACGGCGTTTGAGCTATAAACGCC
* ** *
1356973 GTTATATTACTACTCTATTGTGGCGTTTGTGCTATAAACGCC
1 GCTATATTACTACTCTATTACGGCGTTTGAGCTATAAACGCC
*
1357015 GCTATATTACAACTCTATTACGGCGTTTGAGCTATAAACGCC
1 GCTATATTACTACTCTATTACGGCGTTTGAGCTATAAACGCC
*
1357057 ACTATATTACTACTCTATTACGGCGTTTGAGCTATAAACGCC
1 GCTATATTACTACTCTATTACGGCGTTTGAGCTATAAACGCC
* *
1357099 GCTATATTACGACTCTATTACTGCGTTTGAGCTATAAACGCC
1 GCTATATTACTACTCTATTACGGCGTTTGAGCTATAAACGCC
* * **
1357141 GCTATATCACTACTCTATTATGGCGTTTTTGCTATAAACGCC
1 GCTATATTACTACTCTATTACGGCGTTTGAGCTATAAACGCC
* *
1357183 ACTATATTACTACTTTATT
1 GCTATATTACTACTCTATT
1357202 GCAACATTTT
Statistics
Matches: 237, Mismatches: 32, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
41 3 0.01
42 231 0.97
43 3 0.01
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.36
Consensus pattern (42 bp):
GCTATATTACTACTCTATTACGGCGTTTGAGCTATAAACGCC
Found at i:1358806 original size:83 final size:83
Alignment explanation
Indices: 1358695--1358951 Score: 243
Period size: 83 Copynumber: 3.1 Consensus size: 83
1358685 GCATTTTTTT
* * * ** * * *
1358695 AAAAGCGCTACTATAGACAAAC-ATATTGCGGCGTTTTTAGGGAAAACGCCACTAAATTATTGTT
1 AAAAACGCAACTATAAAC-AACTATATTGCGGCGTTTTTAGCAAAAACGCCGCTAAATTACTGAT
**
1358759 CTATTGTGGCGTTTTTAGC
65 CTATTAAGGCGTTTTTAGC
* * * * *
1358778 ACAAACGCAACTATAAACAACTATATTGCGGCGTTTGTA-TAAAAAGGCCGCTAAATTACTAATC
1 AAAAACGCAACTATAAACAACTATATTGCGGCGTTTTTAGCAAAAACGCCGCTAAATTACTGATC
* *
1358842 TATTAAGGCGTTTTTTGT
66 TATTAAGGCGTTTTTAGC
* * * * *
1358860 AAAAACGCCACTATAAACAACTATAATCCGGCG-TTTTAGCTATAAACGCCGCTAAATTACTGCT
1 AAAAACGCAACTATAAACAACTATATTGCGGCGTTTTTAGC-AAAAACGCCGCTAAATTACTGAT
* *
1358924 CTATTACGGCGTTTGTT-GA
65 CTATTAAGGCGTTT-TTAGC
1358943 AAAAACGCA
1 AAAAACGCA
1358952 GCTAAAGTAT
Statistics
Matches: 141, Mismatches: 29, Indels: 8
0.79 0.16 0.04
Matches are distributed among these distances:
81 4 0.03
82 64 0.45
83 71 0.50
84 2 0.01
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (83 bp):
AAAAACGCAACTATAAACAACTATATTGCGGCGTTTTTAGCAAAAACGCCGCTAAATTACTGATC
TATTAAGGCGTTTTTAGC
Found at i:1358852 original size:82 final size:82
Alignment explanation
Indices: 1358695--1358951 Score: 250
Period size: 82 Copynumber: 3.1 Consensus size: 82
1358685 GCATTTTTTT
* * * ** * * *
1358695 AAAAGCGCTACTATAGACAAAC-ATATTGCGGCGTTTTTAGGGAAAACGCCACTAAATTATTGTT
1 AAAAACGCAACTATAAAC-AACTATATTGCGGCG-TTTTAGTAAAAACGCCGCTAAATTACTGAT
**
1358759 CTATTGTGGCGTTTTTAGC
64 CTATTAAGGCGTTTTTAGC
* * *
1358778 ACAAACGCAACTATAAACAACTATATTGCGGCGTTTGTA-TAAAAAGGCCGCTAAATTACTAATC
1 AAAAACGCAACTATAAACAACTATATTGCGGCGTTT-TAGTAAAAACGCCGCTAAATTACTGATC
* *
1358842 TATTAAGGCGTTTTTTGT
65 TATTAAGGCGTTTTTAGC
* * * * *
1358860 AAAAACGCCACTATAAACAACTATAATCCGGCGTTTTAGCTATAAACGCCGCTAAATTACTGCTC
1 AAAAACGCAACTATAAACAACTATATTGCGGCGTTTTAG-TAAAAACGCCGCTAAATTACTGATC
* *
1358925 TATTACGGCGTTTGTT-GA
65 TATTAAGGCGTTT-TTAGC
1358943 AAAAACGCA
1 AAAAACGCA
1358952 GCTAAAGTAT
Statistics
Matches: 143, Mismatches: 26, Indels: 10
0.80 0.15 0.06
Matches are distributed among these distances:
81 2 0.01
82 70 0.49
83 69 0.48
84 2 0.01
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (82 bp):
AAAAACGCAACTATAAACAACTATATTGCGGCGTTTTAGTAAAAACGCCGCTAAATTACTGATCT
ATTAAGGCGTTTTTAGC
Found at i:1370129 original size:24 final size:24
Alignment explanation
Indices: 1370083--1370139 Score: 82
Period size: 25 Copynumber: 2.4 Consensus size: 24
1370073 TATAAAGTTA
*
1370083 TTTA-TTTTCTTTTATTTTCAAGT
1 TTTATTTTTATTTTATTTTCAAGT
1370106 TTTCATTTTTATTTTATTTT-AAGT
1 TTT-ATTTTTATTTTATTTTCAAGT
1370130 TTTATTTTTA
1 TTTATTTTTA
1370140 AACATGCTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
23 10 0.32
24 8 0.26
25 13 0.42
ACGTcount: A:0.19, C:0.05, G:0.04, T:0.72
Consensus pattern (24 bp):
TTTATTTTTATTTTATTTTCAAGT
Found at i:1370132 original size:12 final size:12
Alignment explanation
Indices: 1370092--1370137 Score: 58
Period size: 12 Copynumber: 3.8 Consensus size: 12
1370082 ATTTATTTTC
1370092 TTTTATTTTCAAG
1 TTTTATTTT-AAG
*
1370105 TTTTCATTTTTA-
1 TTTT-ATTTTAAG
1370117 TTTTATTTTAAG
1 TTTTATTTTAAG
1370129 TTTTATTTT
1 TTTTATTTT
1370138 TAAACATGCT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
11 6 0.21
12 13 0.45
13 5 0.17
14 5 0.17
ACGTcount: A:0.20, C:0.04, G:0.04, T:0.72
Consensus pattern (12 bp):
TTTTATTTTAAG
Found at i:1370743 original size:17 final size:17
Alignment explanation
Indices: 1370720--1370764 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
1370710 TATTCTCTTT
1370720 ATTTTTATT-TTAAATC
1 ATTTTTATTATTAAATC
*
1370736 ACTTTTTATTATTTAATC
1 A-TTTTTATTATTAAATC
*
1370754 ATTTTTTTTAT
1 ATTTTTATTAT
1370765 CAAAAACCCC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 1 0.04
17 17 0.68
18 7 0.28
ACGTcount: A:0.27, C:0.07, G:0.00, T:0.67
Consensus pattern (17 bp):
ATTTTTATTATTAAATC
Found at i:1376061 original size:20 final size:20
Alignment explanation
Indices: 1376038--1376083 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
1376028 AACTAAACCT
*
1376038 CTAACAGATTTCTAACTTCC
1 CTAACAGATTTATAACTTCC
* *
1376058 CTAACTGATTTATAATTTCC
1 CTAACAGATTTATAACTTCC
*
1376078 CAAACA
1 CTAACA
1376084 ACTTTTATTC
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.35, C:0.26, G:0.04, T:0.35
Consensus pattern (20 bp):
CTAACAGATTTATAACTTCC
Found at i:1381248 original size:5 final size:5
Alignment explanation
Indices: 1381238--1381263 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
1381228 TTCTTTACCA
1381238 AAAAT AAAAT AAAAT AAAAT AAAAT A
1 AAAAT AAAAT AAAAT AAAAT AAAAT A
1381264 TTAAAATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:1381330 original size:14 final size:14
Alignment explanation
Indices: 1381274--1381330 Score: 55
Period size: 14 Copynumber: 4.1 Consensus size: 14
1381264 TTAAAATAAT
1381274 TTATT-CAATATTA
1 TTATTACAATATTA
1381287 TGTATGT-CAATATTA
1 T-TAT-TACAATATTA
*
1381302 TTATTACAAAATTA
1 TTATTACAATATTA
* *
1381316 TTTTTACAATTTTA
1 TTATTACAATATTA
1381330 T
1 T
1381331 AAATAAAAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
13 2 0.05
14 25 0.68
15 10 0.27
ACGTcount: A:0.37, C:0.07, G:0.04, T:0.53
Consensus pattern (14 bp):
TTATTACAATATTA
Found at i:1381718 original size:27 final size:28
Alignment explanation
Indices: 1381666--1381719 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 28
1381656 AATATTATTG
*
1381666 AAATATTATTTTTAATAATTTTATTAAT
1 AAATATTATTTTAAATAATTTTATTAAT
1381694 AAATA-TATTTTAAAT-ATTTTAATTAA
1 AAATATTATTTTAAATAATTTT-ATTAA
1381720 AATAATACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
26 5 0.21
27 14 0.58
28 5 0.21
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (28 bp):
AAATATTATTTTAAATAATTTTATTAAT
Found at i:1382170 original size:25 final size:27
Alignment explanation
Indices: 1382119--1382173 Score: 87
Period size: 25 Copynumber: 2.1 Consensus size: 27
1382109 CTAAATATAT
1382119 TATTATAATATTAAAATAATATTAATA
1 TATTATAATATTAAAATAATATTAATA
*
1382146 TATTATACTATT-AAA-AATATTAATA
1 TATTATAATATTAAAATAATATTAATA
1382171 TAT
1 TAT
1382174 AGTGTAAATA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 13 0.48
26 3 0.11
27 11 0.41
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (27 bp):
TATTATAATATTAAAATAATATTAATA
Found at i:1382174 original size:27 final size:29
Alignment explanation
Indices: 1382112--1382193 Score: 84
Period size: 27 Copynumber: 2.9 Consensus size: 29
1382102 TACATAACTA
1382112 AATATATTATTATAATATTAAAATAATATT
1 AATATA-TATTATAATATTAAAATAATATT
*
1382142 -A-ATATATTATACTATT-AAA-AATATT
1 AATATATATTATAATATTAAAATAATATT
*
1382167 AATATATAGTGTA-AATATTATAATAAT
1 AATATATA-T-TATAATATTAAAATAAT
1382194 TAGCATTGTA
Statistics
Matches: 43, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
25 6 0.14
26 4 0.09
27 16 0.37
28 9 0.21
29 5 0.12
30 3 0.07
ACGTcount: A:0.52, C:0.01, G:0.02, T:0.44
Consensus pattern (29 bp):
AATATATATTATAATATTAAAATAATATT
Found at i:1383599 original size:29 final size:28
Alignment explanation
Indices: 1383548--1383912 Score: 411
Period size: 29 Copynumber: 12.8 Consensus size: 28
1383538 GACCCGACCC
1383548 GGTGATATTTTTGTAATTATTTTTAAAAA
1 GGTGATA-TTTTGTAATTATTTTTAAAAA
1383577 GGTGATATTTTGTAATTATTTTTAAAAA
1 GGTGATATTTTGTAATTATTTTTAAAAA
* *
1383605 TGTCATATTTTTGTAATTATTTTTAAAAA
1 GGTGATA-TTTTGTAATTATTTTTAAAAA
1383634 GGTGATATTTTGTAATTATTTTTAAAAA
1 GGTGATATTTTGTAATTATTTTTAAAAA
* * *
1383662 TGTTATATTTTTGTAATTATTTTAAAAAAA
1 GGTGATA-TTTTGTAATTATTTT-TAAAAA
1383692 GGTGATATTTTTGTAATTA-TTTTAAAAA
1 GGTGATA-TTTTGTAATTATTTTTAAAAA
*
1383720 -ATGATA--TTGTAATTATTTTTAAAAA
1 GGTGATATTTTGTAATTATTTTTAAAAA
* *
1383745 AGTTATATTTTGTAATTATTTTTAAAAA
1 GGTGATATTTTGTAATTATTTTTAAAAA
*
1383773 GGTGATATTTTTATAATTATTTTTTAAAAA
1 GGTGATA-TTTTGTAATTA-TTTTTAAAAA
*
1383803 -GTTATTATTTTCGTAATTATTTTT-AAAA
1 GGTGA-TATTTT-GTAATTATTTTTAAAAA
* *
1383831 -GTGATATTTTCGTAAATATTTTTAAGAA
1 GGTGATATTTT-GTAATTATTTTTAAAAA
* ** *
1383859 GGTGTTATTTTCGTAAACATTTTTAAAAG
1 GGTGATATTTT-GTAATTATTTTTAAAAA
*
1383888 GGTGTTAGTTTTGTAATTAATTTTT
1 GGTGATA-TTTTGTAATT-ATTTTT
1383913 GTTAGGGTGG
Statistics
Matches: 294, Mismatches: 27, Indels: 29
0.84 0.08 0.08
Matches are distributed among these distances:
24 9 0.03
25 9 0.03
26 4 0.01
27 23 0.08
28 91 0.31
29 108 0.37
30 50 0.17
ACGTcount: A:0.35, C:0.01, G:0.12, T:0.52
Consensus pattern (28 bp):
GGTGATATTTTGTAATTATTTTTAAAAA
Found at i:1383640 original size:57 final size:57
Alignment explanation
Indices: 1383549--1383912 Score: 438
Period size: 57 Copynumber: 6.4 Consensus size: 57
1383539 ACCCGACCCG
1383549 GTGATATTTTTGTAATTATTTTTAAAAAGGTGATATTTTGTAATTATTTTTAAAAAT
1 GTGATATTTTTGTAATTATTTTTAAAAAGGTGATATTTTGTAATTATTTTTAAAAAT
*
1383606 GTCATATTTTTGTAATTATTTTTAAAAAGGTGATATTTTGTAATTATTTTTAAAAAT
1 GTGATATTTTTGTAATTATTTTTAAAAAGGTGATATTTTGTAATTATTTTTAAAAAT
* *
1383663 GTTATATTTTTGTAATTATTTTAAAAAAAGGTGATATTTTTGTAATTA-TTTTAAAAA-
1 GTGATATTTTTGTAATTATTTT-TAAAAAGGTGATA-TTTTGTAATTATTTTTAAAAAT
* * * *
1383720 ATGATA---TTGTAATTATTTTTAAAAAAGTTATATTTTGTAATTATTTTTAAAAAG
1 GTGATATTTTTGTAATTATTTTTAAAAAGGTGATATTTTGTAATTATTTTTAAAAAT
* *
1383774 GTGATATTTTTATAATTATTTTTTAAAAA-GTTATTATTTTCGTAATTATTTTT-AAAA-
1 GTGATATTTTTGTAATTA-TTTTTAAAAAGGTGA-TATTTT-GTAATTATTTTTAAAAAT
* * * * ** **
1383831 GTGATATTTTCGTAAATATTTTTAAGAAGGTGTTATTTTCGTAAACATTTTTAAAAGG
1 GTGATATTTTTGTAATTATTTTTAAAAAGGTGATATTTT-GTAATTATTTTTAAAAAT
* *
1383889 GTGTTAGTTTTGTAATTAATTTTT
1 GTGATATTTTTGTAATT-ATTTTT
1383913 GTTAGGGTGG
Statistics
Matches: 270, Mismatches: 23, Indels: 26
0.85 0.07 0.08
Matches are distributed among these distances:
52 11 0.04
53 19 0.07
54 18 0.07
56 26 0.10
57 113 0.42
58 54 0.20
59 29 0.11
ACGTcount: A:0.35, C:0.01, G:0.12, T:0.52
Consensus pattern (57 bp):
GTGATATTTTTGTAATTATTTTTAAAAAGGTGATATTTTGTAATTATTTTTAAAAAT
Found at i:1385004 original size:25 final size:25
Alignment explanation
Indices: 1384956--1385005 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
1384946 AGGGTAACTC
* *
1384956 TTTTATGAGATTTATTGCAGTATGA
1 TTTTATGAGATTTACTGCACTATGA
*
1384981 TTTTATGAGATTTACTGGACTATGA
1 TTTTATGAGATTTACTGCACTATGA
1385006 CTTGTTTAGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.28, C:0.06, G:0.20, T:0.46
Consensus pattern (25 bp):
TTTTATGAGATTTACTGCACTATGA
Found at i:1390693 original size:29 final size:29
Alignment explanation
Indices: 1390651--1390760 Score: 184
Period size: 29 Copynumber: 3.8 Consensus size: 29
1390641 CGACTCGATA
* *
1390651 ATATTTTTTTAATTATTTTCAAAAAGGTG
1 ATATTTTTGTAATTATTTTTAAAAAGGTG
* *
1390680 ATATTTTTGTAATTATTTTTAAAAATGTT
1 ATATTTTTGTAATTATTTTTAAAAAGGTG
1390709 ATATTTTTGTAATTATTTTTAAAAAGGTG
1 ATATTTTTGTAATTATTTTTAAAAAGGTG
1390738 ATATTTTTGTAATTATTTTTAAA
1 ATATTTTTGTAATTATTTTTAAA
1390761 GTAATGGATT
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 75 1.00
ACGTcount: A:0.35, C:0.01, G:0.09, T:0.55
Consensus pattern (29 bp):
ATATTTTTGTAATTATTTTTAAAAAGGTG
Found at i:1391258 original size:11 final size:11
Alignment explanation
Indices: 1391225--1391258 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
1391215 TGAAAGGTTA
1391225 TTAGGGTTATG
1 TTAGGGTTATG
* *
1391236 ATAGGTTTATG
1 TTAGGGTTATG
1391247 TTAGGGTTATG
1 TTAGGGTTATG
1391258 T
1 T
1391259 AATGAGCTCG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.21, C:0.00, G:0.32, T:0.47
Consensus pattern (11 bp):
TTAGGGTTATG
Found at i:1391709 original size:91 final size:91
Alignment explanation
Indices: 1391590--1392442 Score: 739
Period size: 91 Copynumber: 9.2 Consensus size: 91
1391580 CTTACGAGCT
* ** *
1391590 AAGGTTGAACAAGTTCTTCTCGTTATGAACTTCTTCTCCCTCACCGGATGAGCTCTTCTCATTAT
1 AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTCGGATGAGTTCTTCTCATTAT
* *
1391655 GAACTCTCTAATGGAAATGTTGAGCC
66 GAACTCTCTACTGGAAATGTTGATCC
* * *
1391681 AAGGTTGAACAAGTTCTTTTCATTATGAACTTCTTTTCCCTCGTCGGATGAGTTTTTCTCATTAT
1 AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTCGGATGAGTTCTTCTCATTAT
* * * *
1391746 GAACTCCCCACTTGAAATTTTGATCC
66 GAACTCTCTACTGGAAATGTTGATCC
* * ** * *
1391772 AAGGTTGAAAAAGTTCTTCTCTTTATGAACTT-TT-T--CTC-T-TTATGAACTTTTTCTCATTC
1 AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTCGGATG-AGTTCTTCTCA-T-
* * * * **
1391831 GTCGGATGAGTTATTCTCATTA-T-GAACTCTTCACTGGA
63 -T---ATGA---ACTCTC--TACTGGAAATGTTGA-T-CC
* * * *
1391869 AATGTTTATCCAAGTTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCTTCGTCGGATGAGTT
1 AAGGTTGA-ACAAG----------TTCTTCTCATTATGAACTTCTTCTCCCTCGTCGGATGAGTT
* *
1391934 ATTCTCATTATAAACTCT-TCACTGGAAATGTTGATCC
55 CTTCTCATTATGAACTCTCT-ACTGGAAATGTTGATCC
* * * * *
1391971 ATA-GTTAAACAAGTTCTTCTTATTA-GTAACTTCTTCT-CCTACATCAGACGAGTTCTTCTCAT
1 A-AGGTTGAACAAGTTCTTCTCATTATG-AACTTCTTCTCCCT-CGTCGGATGAGTTCTTCTCAT
* *
1392033 TATGAACTCCCTGCTGGAAATGTTGATCC
63 TATGAACTCTCTACTGGAAATGTTGATCC
* *
1392062 AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTCGAACGAGTTCTTCTCATTAT
1 AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTCGGATGAGTTCTTCTCATTAT
* * * *
1392127 GAACTCCCCACTGGAATTGTTTATCC
66 GAACTCTCTACTGGAAATGTTGATCC
*
1392153 ACA-GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTCGAATGAGTTCTTCTCATTA
1 A-AGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTCGGATGAGTTCTTCTCATTA
* *
1392217 TG-AC-CTCTTCGTTGGAGATGTTGATCC
65 TGAACTCTCTAC--TGGAAATGTTGATCC
**
1392244 AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTCGGAAAAGTTCTTCTCATTAT
1 AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTCGGATGAGTTCTTCTCATTAT
* * ** *
1392309 GAATTCCCCGCTGTAAATGTTGATCC
66 GAACTCTCTACTGGAAATGTTGATCC
* * * * *
1392335 AAGGTTGAATAAGTTCTTATCATTATGAATTTCTTCTCCCTCGTTGGATGAGTTCTTCTCATTTT
1 AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTCGGATGAGTTCTTCTCATTAT
* **
1392400 GAACTCCCCT-CTATAAATGTTGATCC
66 GAACT-CTCTACTGGAAATGTTGATCC
1392426 AAGGTTGAACAAGTTCT
1 AAGGTTGAACAAGTTCT
1392443 CCCTCGTCGG
Statistics
Matches: 623, Mismatches: 91, Indels: 96
0.77 0.11 0.12
Matches are distributed among these distances:
85 3 0.00
86 11 0.02
87 4 0.01
89 5 0.01
90 9 0.01
91 485 0.78
92 14 0.02
93 3 0.00
95 11 0.02
96 2 0.00
97 7 0.01
98 3 0.00
101 5 0.01
102 6 0.01
103 3 0.00
104 11 0.02
107 3 0.00
108 18 0.03
109 2 0.00
110 2 0.00
112 3 0.00
113 10 0.02
114 3 0.00
ACGTcount: A:0.24, C:0.22, G:0.15, T:0.39
Consensus pattern (91 bp):
AAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTCGGATGAGTTCTTCTCATTAT
GAACTCTCTACTGGAAATGTTGATCC
Found at i:1391810 original size:17 final size:17
Alignment explanation
Indices: 1391788--1391826 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
1391778 GAAAAAGTTC
1391788 TTCTCTTTATGAACTTT
1 TTCTCTTTATGAACTTT
1391805 TTCTCTTTATGAACTTT
1 TTCTCTTTATGAACTTT
1391822 TTCTC
1 TTCTC
1391827 ATTCGTCGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.15, C:0.21, G:0.05, T:0.59
Consensus pattern (17 bp):
TTCTCTTTATGAACTTT
Found at i:1391818 original size:108 final size:108
Alignment explanation
Indices: 1391694--1391917 Score: 308
Period size: 108 Copynumber: 2.1 Consensus size: 108
1391684 GTTGAACAAG
* * * *
1391694 TTCTTTTCATTATGAACTTCTTT-TCCCTCGTCGGATGAGTTTTTCTCATTATGAACTCCCCACT
1 TTCTTCTCTTTATGAACTT-TTTCTCACTCGTCGGATGAGTTATTCTCATTATGAACTCCCCACT
* *
1391758 TGAAAT-TTTGATCCAAGGTTGAAAAAGTTCTTCTCTTTATGAAC
65 GGAAATGTTT-ATCCAAGGTTGAAAAAGTTCTTCTCATTATGAAC
* * **
1391802 TTTTTCTCTTTATGAACTTTTTCTCATTCGTCGGATGAGTTATTCTCATTATGAACTCTTCACTG
1 TTCTTCTCTTTATGAACTTTTTCTCACTCGTCGGATGAGTTATTCTCATTATGAACTCCCCACTG
* *
1391867 GAAATGTTTATCCAAGTTTGAACAAGTTCTTCTCATTATGAAC
66 GAAATGTTTATCCAAGGTTGAAAAAGTTCTTCTCATTATGAAC
1391910 TTCTTCTC
1 TTCTTCTC
1391918 CTTCGTCGGA
Statistics
Matches: 101, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
107 3 0.03
108 95 0.94
109 3 0.03
ACGTcount: A:0.23, C:0.21, G:0.12, T:0.44
Consensus pattern (108 bp):
TTCTTCTCTTTATGAACTTTTTCTCACTCGTCGGATGAGTTATTCTCATTATGAACTCCCCACTG
GAAATGTTTATCCAAGGTTGAAAAAGTTCTTCTCATTATGAAC
Found at i:1391970 original size:199 final size:199
Alignment explanation
Indices: 1391606--1391990 Score: 533
Period size: 199 Copynumber: 1.9 Consensus size: 199
1391596 GAACAAGTTC
* *
1391606 TTCTCGTTATGAACTTCTTCTCCCTCACCGGATGAGCTCTTCTCATTATGAACTCTCTAATGGAA
1 TTCTCGTTATGAACTTCTTCTCACTCACCGGATGAGCTATTCTCATTATGAACTCTCTAATGGAA
* * *
1391671 ATGTTGAGCCAAGGTTGAACAAGTTCTTTTCATTATGAACTTCTTTTCCCTCGTCGGATGAGTTT
66 ATGTTGAGCCAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTCGGATGAGTTA
* * *
1391736 TTCTCATTATGAACTCCCCACTTGAAATTTTGATCCA-AGGTTGAAA-AAGTTCTTCTCTTTATG
131 TTCTCATTATAAACTCCCCACTGGAAATGTTGATCCATA-GTT-AAACAAGTTCTTCTCTTTATG
1391799 AACTTT
194 AACTTT
* * * ** * *
1391805 TTCTCTTTATGAACTTTTTCTCATTCGTCGGATGAGTTATTCTCATTATGAACTCT-TCACTGGA
1 TTCTCGTTATGAACTTCTTCTCACTCACCGGATGAGCTATTCTCATTATGAACTCTCT-AATGGA
* * * *
1391869 AATGTTTATCCAAGTTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCTTCGTCGGATGAGTT
65 AATGTTGAGCCAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTCGGATGAGTT
**
1391934 ATTCTCATTATAAACTCTTCACTGGAAATGTTGATCCATAGTTAAACAAGTTCTTCT
130 ATTCTCATTATAAACTCCCCACTGGAAATGTTGATCCATAGTTAAACAAGTTCTTCT
1391991 TATTAGTAAC
Statistics
Matches: 162, Mismatches: 21, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
198 4 0.02
199 157 0.97
200 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.14, T:0.41
Consensus pattern (199 bp):
TTCTCGTTATGAACTTCTTCTCACTCACCGGATGAGCTATTCTCATTATGAACTCTCTAATGGAA
ATGTTGAGCCAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTCGGATGAGTTA
TTCTCATTATAAACTCCCCACTGGAAATGTTGATCCATAGTTAAACAAGTTCTTCTCTTTATGAA
CTTT
Found at i:1392300 original size:273 final size:272
Alignment explanation
Indices: 1391805--1392442 Score: 877
Period size: 273 Copynumber: 2.3 Consensus size: 272
1391795 TATGAACTTT
* * ** * **
1391805 TTCTCTTTATGAACTTTTTCTCATTCGTCGGATGAGTTATTCTCATTATGAACTCTTCACTGGAA
1 TTCTCATTATGAACTTCTTCTCCCTCGTCGGATGAGTTCTTCTCATTATGAACTCCCCACTGGAA
* *
1391870 ATGTTTATCCAAGTTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCTTCGTCGGATGAGTTA
66 ATGTTTATCCAAG-TTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTCGAATGAGTTA
*
1391935 TTCTCATTATAAACTCTTCACTGGAAATGTTGATCCATAGTTAAACAAGTTCTTCTTATTAGTAA
130 TTCTCATTATAAACTCTTCACTGGAAATGTTGATCCATAGTTAAACAAGTTCTTCTCATTAGTAA
** *
1392000 CTTCTTCTCCTACATCAGACGAGTTCTTCTCATTATGAACTCCCTGCTGGAAATGTTGATCCAAG
195 CTTCTTCTCCTACATCAGAAAAGTTCTTCTCATTATGAACTCCCCGCTGGAAATGTTGATCCAAG
1392065 GTTGAACAAGTTC
260 GTTGAACAAGTTC
* *
1392078 TTCTCATTATGAACTTCTTCTCCCTCGTCGAACGAGTTCTTCTCATTATGAACTCCCCACTGGAA
1 TTCTCATTATGAACTTCTTCTCCCTCGTCGGATGAGTTCTTCTCATTATGAACTCCCCACTGGAA
* *
1392143 TTGTTTATCCACAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTCGAATGAGTTC
66 ATGTTTATCCA-AGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTCGAATGAGTTA
* * ** * *
1392208 TTCTCATTATGACCTCTTCGTTGGAGATGTTGATCCA-AGGTTGAACAAGTTCTTCTCATTA-TG
130 TTCTCATTATAAACTCTTCACTGGAAATGTTGATCCATA-GTTAAACAAGTTCTTCTCATTAGT-
* * * *
1392271 AACTTCTTCTCCCT-CGTCGGAAAAGTTCTTCTCATTATGAATTCCCCGCTGTAAATGTTGATCC
193 AACTTCTTCT-CCTACATCAGAAAAGTTCTTCTCATTATGAACTCCCCGCTGGAAATGTTGATCC
*
1392335 AAGGTTGAATAAGTTC
257 AAGGTTGAACAAGTTC
* * * * * **
1392351 TTATCATTATGAATTTCTTCTCCCTCGTTGGATGAGTTCTTCTCATTTTGAACTCCCCTCTATAA
1 TTCTCATTATGAACTTCTTCTCCCTCGTCGGATGAGTTCTTCTCATTATGAACTCCCCACTGGAA
*
1392416 ATGTTGATCCAAGGTTGAACAAGTTCT
66 ATGTTTATCCAA-GTTGAACAAGTTCT
1392443 CCCTCGTCGG
Statistics
Matches: 321, Mismatches: 39, Indels: 10
0.87 0.11 0.03
Matches are distributed among these distances:
272 3 0.01
273 313 0.98
274 5 0.02
ACGTcount: A:0.24, C:0.23, G:0.15, T:0.39
Consensus pattern (272 bp):
TTCTCATTATGAACTTCTTCTCCCTCGTCGGATGAGTTCTTCTCATTATGAACTCCCCACTGGAA
ATGTTTATCCAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCTCGTCGAATGAGTTAT
TCTCATTATAAACTCTTCACTGGAAATGTTGATCCATAGTTAAACAAGTTCTTCTCATTAGTAAC
TTCTTCTCCTACATCAGAAAAGTTCTTCTCATTATGAACTCCCCGCTGGAAATGTTGATCCAAGG
TTGAACAAGTTC
Found at i:1392482 original size:39 final size:39
Alignment explanation
Indices: 1392439--1392514 Score: 143
Period size: 39 Copynumber: 1.9 Consensus size: 39
1392429 GTTGAACAAG
1392439 TTCTCCCTCGTCGGATGAGTTCTTCTCATTATAAACTTC
1 TTCTCCCTCGTCGGATGAGTTCTTCTCATTATAAACTTC
*
1392478 TTCTCCCTCGTCGGATGAGTTCTTCTCATTATGAACT
1 TTCTCCCTCGTCGGATGAGTTCTTCTCATTATAAACT
1392515 CCCCGTTGGA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.17, C:0.28, G:0.14, T:0.41
Consensus pattern (39 bp):
TTCTCCCTCGTCGGATGAGTTCTTCTCATTATAAACTTC
Found at i:1400505 original size:30 final size:30
Alignment explanation
Indices: 1400469--1400526 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
1400459 GGTAAACCCA
*
1400469 TTGACTTTGACCAAGTGAACTCATTAACCG
1 TTGACTTTGACCAAGTCAACTCATTAACCG
* *
1400499 TTGACTTTGACCGAGTCAACTCGTTAAC
1 TTGACTTTGACCAAGTCAACTCATTAAC
1400527 TTTGACCAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (30 bp):
TTGACTTTGACCAAGTCAACTCATTAACCG
Found at i:1402250 original size:45 final size:45
Alignment explanation
Indices: 1402201--1402304 Score: 199
Period size: 45 Copynumber: 2.3 Consensus size: 45
1402191 TGAACTAAGT
1402201 AAATTCAATGAATAAGGATTAAGTAAGTCATTAGGATAAGTTTGG
1 AAATTCAATGAATAAGGATTAAGTAAGTCATTAGGATAAGTTTGG
1402246 AAATTCAATGAATAAGGATTAAGTAAGTCATTAGGATAAGTTTGG
1 AAATTCAATGAATAAGGATTAAGTAAGTCATTAGGATAAGTTTGG
1402291 AAATTCAGATGAAT
1 AAATTCA-ATGAAT
1402305 TTACATGAGG
Statistics
Matches: 58, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
45 52 0.90
46 6 0.10
ACGTcount: A:0.43, C:0.05, G:0.21, T:0.31
Consensus pattern (45 bp):
AAATTCAATGAATAAGGATTAAGTAAGTCATTAGGATAAGTTTGG
Found at i:1405109 original size:30 final size:30
Alignment explanation
Indices: 1405073--1405134 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
1405063 ACTGGGTCAA
* *
1405073 ACCGTTGACTCTGGCCGAGTCAA-CTCATTG
1 ACCGTTGACTCTGACAGAGTCAACCT-ATTG
*
1405103 ACCGTTGACTTTGACAGAGTCAACCTATTG
1 ACCGTTGACTCTGACAGAGTCAACCTATTG
1405133 AC
1 AC
1405135 TTTGACTTTG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 26 0.93
31 2 0.07
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.27
Consensus pattern (30 bp):
ACCGTTGACTCTGACAGAGTCAACCTATTG
Found at i:1409691 original size:29 final size:29
Alignment explanation
Indices: 1409642--1409697 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
1409632 TTGATTCTAT
*
1409642 TTATTTATAATTTTGCCTTTAAATTTCTG
1 TTATTTATAATTTTGCATTTAAATTTCTG
* *
1409671 TTATTT-TTATTTATGCATTTATATTTC
1 TTATTTATAATTT-TGCATTTAAATTTC
1409698 AGTCCTTTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 5 0.22
29 18 0.78
ACGTcount: A:0.23, C:0.09, G:0.05, T:0.62
Consensus pattern (29 bp):
TTATTTATAATTTTGCATTTAAATTTCTG
Found at i:1410461 original size:21 final size:24
Alignment explanation
Indices: 1410425--1410484 Score: 63
Period size: 24 Copynumber: 2.6 Consensus size: 24
1410415 ATATATATAT
* *
1410425 ATAATAAATATAATAACG-AAAA-A
1 ATAAT-AATGTAATAAAGTAAAATA
*
1410448 A-AATAATTTAATAAAGTAAAATA
1 ATAATAATGTAATAAAGTAAAATA
1410471 ATAATAATGTAATA
1 ATAATAATGTAATA
1410485 TAATATAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
21 10 0.32
22 7 0.23
23 3 0.10
24 11 0.35
ACGTcount: A:0.65, C:0.02, G:0.05, T:0.28
Consensus pattern (24 bp):
ATAATAATGTAATAAAGTAAAATA
Found at i:1410477 original size:16 final size:16
Alignment explanation
Indices: 1410456--1410493 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
1410446 AAAAATAATT
1410456 TAATAAAGTAAAATAA
1 TAATAAAGTAAAATAA
* *
1410472 TAATAATGTAATATAA
1 TAATAAAGTAAAATAA
1410488 T-ATAAA
1 TAATAAA
1410494 TACATGAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
15 4 0.21
16 15 0.79
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (16 bp):
TAATAAAGTAAAATAA
Found at i:1411240 original size:37 final size:37
Alignment explanation
Indices: 1411190--1411281 Score: 107
Period size: 36 Copynumber: 2.5 Consensus size: 37
1411180 GTGCTTGTGG
*
1411190 ATCCTATCTTTAGGAGTTTAAAACATAGCAAAATTCT
1 ATCCTATTTTTAGGAGTTTAAAACATAGCAAAATTCT
* * * *
1411227 ATCCTATTTTTAGGAG-TTGAATCCTAGCAGAATTCT
1 ATCCTATTTTTAGGAGTTTAAAACATAGCAAAATTCT
*
1411263 ATCATATTTTTTA-GAGTTT
1 ATCCTA-TTTTTAGGAGTTT
1411282 GAATCCTAGT
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
36 24 0.51
37 23 0.49
ACGTcount: A:0.32, C:0.14, G:0.13, T:0.41
Consensus pattern (37 bp):
ATCCTATTTTTAGGAGTTTAAAACATAGCAAAATTCT
Found at i:1411262 original size:36 final size:37
Alignment explanation
Indices: 1411190--1411290 Score: 125
Period size: 37 Copynumber: 2.8 Consensus size: 37
1411180 GTGCTTGTGG
* * * *
1411190 ATCCTATCTTTAGGAGTTTAAAACATAGCAAAATTCT
1 ATCCTATTTTTAGGAGTTTGAATCCTAGCAAAATTCT
*
1411227 ATCCTATTTTTAGGAG-TTGAATCCTAGCAGAATTCT
1 ATCCTATTTTTAGGAGTTTGAATCCTAGCAAAATTCT
*
1411263 ATCATATTTTTTA-GAGTTTGAATCCTAG
1 ATCCTA-TTTTTAGGAGTTTGAATCCTAG
1411291 TAGGACGAAA
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
36 24 0.43
37 32 0.57
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.40
Consensus pattern (37 bp):
ATCCTATTTTTAGGAGTTTGAATCCTAGCAAAATTCT
Found at i:1411284 original size:37 final size:36
Alignment explanation
Indices: 1411215--1411290 Score: 109
Period size: 36 Copynumber: 2.1 Consensus size: 36
1411205 GTTTAAAACA
*
1411215 TAGCAAAATTCTATCCTATTTTTAGGAGTTGAATCC
1 TAGCAAAATTCTATCATATTTTTAGGAGTTGAATCC
*
1411251 TAGCAGAATTCTATCATATTTTTTA-GAGTTTGAATCC
1 TAGCAAAATTCTATCATA-TTTTTAGGAG-TTGAATCC
1411288 TAG
1 TAG
1411291 TAGGACGAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
36 19 0.53
37 17 0.47
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.41
Consensus pattern (36 bp):
TAGCAAAATTCTATCATATTTTTAGGAGTTGAATCC
Found at i:1411941 original size:100 final size:102
Alignment explanation
Indices: 1411751--1412173 Score: 397
Period size: 106 Copynumber: 4.0 Consensus size: 102
1411741 AATATTGTTC
* * * *
1411751 CGAGTCCAATATCCTCCGCTGTGAAGTTGAAATTGGTTCTGGAACCGGGAAATTATTTGTTGACA
1 CGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCT-GAATC---AAAATATTTGTTGACA
* * * * *
1411816 GTCAGCCGCCCCTTCGCTGTGAAGTTGAGCTTGTGCTGTCT
62 ATCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
* *
1411857 CGAGTCTAATATCCTTCGCTGTGAAGTTGAAATTGACTCTGAA-CAAAAT-TTTGTTGACAATCA
1 CGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAATCAAAATATTTGTTGACAATCA
1411920 GCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
66 GCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
* *
1411957 CGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTTGAAAAATGTTTGTTGACA
1 CGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTG-AA--T-CAAAATATTTGTTGACA
* ** *
1412022 ACCAGTTGTCCCTTCATTGTGAAGTTGAACTTGTGTTGTCT
62 ATCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
* * * * * * ** *
1412063 CGAGTGGCACGATACCCTCCG-TCGTGGAGTT-AAAATCGCGGATGAAACTGAAAAGT-TGTTCG
1 CGAGT--C-CAATATCCTTCGCT-GTGAAGTTGAAATTGGC-TCTG-AA-TCAAAA-TAT-TT-G
* *
1412125 TTGACAACCAGCCGTCCCTTCGTTGTGAAGATGAACTTGTGTTGTCT
56 TTGACAATCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
1412172 CG
1 CG
1412174 GGTAGCATGA
Statistics
Matches: 272, Mismatches: 31, Indels: 25
0.83 0.09 0.08
Matches are distributed among these distances:
100 85 0.31
101 6 0.02
104 1 0.00
105 8 0.03
106 88 0.32
107 5 0.02
108 12 0.04
109 67 0.25
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.33
Consensus pattern (102 bp):
CGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAATCAAAATATTTGTTGACAATCA
GCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
Found at i:1412062 original size:106 final size:105
Alignment explanation
Indices: 1411751--1412271 Score: 484
Period size: 109 Copynumber: 4.9 Consensus size: 105
1411741 AATATTGTTC
* * * *
1411751 CGAGTCCAATATCCTCCGCTGTGAAGTTGAAATTGGTTCTGGAACCGGGAAATTATTTGTTGACA
1 CGAGTCCAATATCCTCCGCTGTGAAGTTGAAATTGGCTCT-GAAACGGAAAATTGTTTGTTGACA
** * * * *
1411816 GTCAGCCGCCCCTTCGCTGTGAAGTTGAGCTTGTGCTGTCT
65 ACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
* * *
1411857 CGAGTCTAATATCCTTCGCTGTGAAGTTGAAATTGACTCTG-AAC--AAAA-T-TTTGTTGACAA
1 CGAGTCCAATATCCTCCGCTGTGAAGTTGAAATTGGCTCTGAAACGGAAAATTGTTTGTTGACAA
*
1411917 TCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
66 CCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
* ** *
1411957 CGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTTGAAAAATGTTTGTTGACA
1 CGAGTCCAATATCCTCCGCTGTGAAGTTGAAATTGGCTCTGAAA-CGGAAAATTGTTTGTTGACA
** *
1412022 ACCAGTTGTCCCTTCATTGTGAAGTTGAACTTGTGTTGTCT
65 ACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
* * * * * ** * *
1412063 CGAGTGGCACGATACCCTCCG-TCGTGGAGTT-AAAATCGCGGATGAAACTGAAAAGTTGTTCGT
1 CGAGT--C-CAATATCCTCCGCT-GTGAAGTTGAAATTGGC-TCTGAAACGGAAAA-TTGTTTGT
*
1412126 TGACAACCAGCCGTCCCTTCGTTGTGAAGATGAACTTGTGTTGTCT
60 TGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
* * * * * * * *
1412172 CGGGTAGCATGATATCCTCCG-TCGTGGAGTTGAAATCGGTTCCGAAATTGGGAAATTG-TTGTT
1 CGAGT-CCA--ATATCCTCCGCT-GTGAAGTTGAAATTGGCTCTGAAA-CGGAAAATTGTTTGTT
* * *
1412235 GGCAACCAGCCGTCCCTTTGTTGTGAAGTTTAACTTG
61 GACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTG
1412272 ACTCTAGCTA
Statistics
Matches: 346, Mismatches: 53, Indels: 30
0.81 0.12 0.07
Matches are distributed among these distances:
100 85 0.25
101 3 0.01
102 3 0.01
104 6 0.02
105 2 0.01
106 88 0.25
107 1 0.00
108 51 0.15
109 99 0.29
110 8 0.02
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.33
Consensus pattern (105 bp):
CGAGTCCAATATCCTCCGCTGTGAAGTTGAAATTGGCTCTGAAACGGAAAATTGTTTGTTGACAA
CCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
Found at i:1412922 original size:36 final size:36
Alignment explanation
Indices: 1412865--1413274 Score: 129
Period size: 36 Copynumber: 11.9 Consensus size: 36
1412855 AAAGATTTTG
* * * * *
1412865 TGTTTCAAGAGAAACTGTCTCATGGGAGACAAAATT
1 TGTTTCAAGGGAAATTATCTCAAGAGAGACAAAATT
*
1412901 TGTTTCAAGGGAAATTATCTCAAGAGAGACGAAATT
1 TGTTTCAAGGGAAATTATCTCAAGAGAGACAAAATT
** * * *
1412937 CATTTCAAGGGAAATGT-TTTC-A-A-TG-----TTT
1 TGTTTCAAGGGAAAT-TATCTCAAGAGAGACAAAATT
* * * *
1412965 ATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTT
1 -TGTTTCAAGGGAAATTATCTCAAGAGAGACAAAA-TT
* *
1413003 TGTTTCGAGGGAAACTATCTCAAGAGAGACAAAATT
1 TGTTTCAAGGGAAATTATCTCAAGAGAGACAAAATT
** * * *
1413039 CATTTCAAGGGAAATGT-T-TCCA-A-TG-----TTT
1 TGTTTCAAGGGAAAT-TATCTCAAGAGAGACAAAATT
* * * *
1413067 ATGTTTCAAGAGAAACTATCTCAATG-GAGACGGAATTT
1 -TGTTTCAAGGGAAATTATCTCAA-GAGAGAC-AAAATT
* *
1413105 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAACT
1 TGTTTCAAGGGAAATTATCTCAAGAGAGACAAAATT
** * * *
1413141 CATTTCAAGGGAAATGT-TTTC-A-A-TG-----TTT
1 TGTTTCAAGGGAAAT-TATCTCAAGAGAGACAAAATT
* * * * *
1413169 ATGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTT
1 -TGTTTCAAGGGAAATTATCTCAAGAGAGACAAAA-TT
* * * *
1413207 TGTTTTAAGGGAAACTGTCTCAAGAGAGACAAAGTT
1 TGTTTCAAGGGAAATTATCTCAAGAGAGACAAAATT
* * *
1413243 TGTTTTAAGGGAAACTGTCTCAAGAGAGACAA
1 TGTTTCAAGGGAAATTATCTCAAGAGAGACAA
1413275 TGGTGAGCAC
Statistics
Matches: 276, Mismatches: 60, Indels: 76
0.67 0.15 0.18
Matches are distributed among these distances:
28 8 0.03
29 40 0.14
30 5 0.02
32 3 0.01
33 3 0.01
34 3 0.01
35 5 0.02
36 113 0.41
37 89 0.32
38 7 0.03
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.30
Consensus pattern (36 bp):
TGTTTCAAGGGAAATTATCTCAAGAGAGACAAAATT
Found at i:1413017 original size:37 final size:37
Alignment explanation
Indices: 1412966--1413274 Score: 196
Period size: 37 Copynumber: 8.9 Consensus size: 37
1412956 TCAATGTTTA
* *
1412966 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
* *
1413003 TGTTTCGAGGGAAACTATCTCAAGAGAGACAAAA-TT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
** * **
1413039 CATTTCAAGGGAAA-TGTTTC--------CAATGTTT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
* * **
1413067 ATGTTTCAAGAGAAACTATCTCAATG-GAGACGGAATTT
1 -TGTTTCAAGGGAAACTGTCTCAA-GAGAGACAAAATTT
* *
1413105 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAA-CT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
** * *
1413141 CATTTCAAGGGAAA-TGTTTTC-A-A-TG------TTT
1 TGTTTCAAGGGAAACTG-TCTCAAGAGAGACAAAATTT
* * *
1413169 ATGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTT
1 -TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
* *
1413207 TGTTTTAAGGGAAACTGTCTCAAGAGAGAC-AAAGTT
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
*
1413243 TGTTTTAAGGGAAACTGTCTCAAGAGAGACAA
1 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAA
1413275 TGGTGAGCAC
Statistics
Matches: 205, Mismatches: 41, Indels: 52
0.69 0.14 0.17
Matches are distributed among these distances:
27 3 0.01
28 3 0.01
29 25 0.12
30 7 0.03
32 1 0.00
33 1 0.00
34 1 0.00
35 6 0.03
36 65 0.32
37 86 0.42
38 7 0.03
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.29
Consensus pattern (37 bp):
TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTT
Found at i:1413256 original size:102 final size:102
Alignment explanation
Indices: 1412865--1413239 Score: 626
Period size: 102 Copynumber: 3.7 Consensus size: 102
1412855 AAAGATTTTG
* *
1412865 TGTTTCAAGAGAAACTGTCTCATGGGAGACAAAA-TTTGTTTCAAGGGAAATTATCTCAAGAGAG
1 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAG
*
1412929 ACGAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
66 ACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
*
1412966 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTTCGAGGGAAACTATCTCAAGAGAG
1 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAG
*
1413031 ACAAAATTCATTTCAAGGGAAATGTTTCCAATGTTTA
66 ACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
* * **
1413068 TGTTTCAAGAGAAACTATCTCAATGGAGACGGAATTTTGTTTCAAGGGAAACTATCTCAAGAGAG
1 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAG
*
1413133 ACAAAACTCATTTCAAGGGAAATGTTTTCAATGTTTA
66 ACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
* * *
1413170 TGTTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTTTGTTTTAAGGGAAACTGTCTCAAGAGAG
1 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAG
1413235 ACAAA
66 ACAAA
1413240 GTTTGTTTTA
Statistics
Matches: 254, Mismatches: 19, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
101 33 0.13
102 221 0.87
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.30
Consensus pattern (102 bp):
TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTTGTTTCAAGGGAAACTATCTCAAGAGAG
ACAAAATTCATTTCAAGGGAAATGTTTTCAATGTTTA
Found at i:1414159 original size:22 final size:22
Alignment explanation
Indices: 1414134--1414184 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
1414124 TTGTGTTTGG
*
1414134 TCAAAGGTTTGGCATTTGATGC
1 TCAAAGGTTTGGCATTTAATGC
*
1414156 TCAAAGGTTTGGTATTTAATGC
1 TCAAAGGTTTGGCATTTAATGC
1414178 TCAAAGG
1 TCAAAGG
1414185 ATTGATGGGG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.27, C:0.12, G:0.25, T:0.35
Consensus pattern (22 bp):
TCAAAGGTTTGGCATTTAATGC
Found at i:1414818 original size:20 final size:21
Alignment explanation
Indices: 1414792--1414853 Score: 65
Period size: 20 Copynumber: 3.0 Consensus size: 21
1414782 CTTTTTGTTC
*
1414792 CCTTTTTTATTTTTGTTCTTT
1 CCTTTTTTATTCTTGTTCTTT
* *
1414813 -CTTTTTTGTTCTTGTTTTTT
1 CCTTTTTTATTCTTGTTCTTT
*
1414833 CCTTTTTTGCTTCTT-TTCTTT
1 CCTTTTTT-ATTCTTGTTCTTT
1414854 TTTCTTTTTG
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
20 17 0.50
21 12 0.35
22 5 0.15
ACGTcount: A:0.02, C:0.16, G:0.06, T:0.76
Consensus pattern (21 bp):
CCTTTTTTATTCTTGTTCTTT
Found at i:1414864 original size:22 final size:22
Alignment explanation
Indices: 1414810--1414862 Score: 72
Period size: 23 Copynumber: 2.4 Consensus size: 22
1414800 ATTTTTGTTC
1414810 TTTCTTTTTTG-TTCTTGTTTT
1 TTTCTTTTTTGCTTCTTGTTTT
* *
1414831 TTCCTTTTTTGCTTCTTTTCTTT
1 TTTCTTTTTTGCTTCTTGT-TTT
1414854 TTTCTTTTT
1 TTTCTTTTT
1414863 GCCCTTTTTG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
21 10 0.37
22 6 0.22
23 11 0.41
ACGTcount: A:0.00, C:0.15, G:0.06, T:0.79
Consensus pattern (22 bp):
TTTCTTTTTTGCTTCTTGTTTT
Found at i:1418214 original size:21 final size:21
Alignment explanation
Indices: 1418188--1418234 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
1418178 ATAATAAATA
* *
1418188 TAATAACGAAAAAAAATAATT
1 TAATAAAGAAAAAAAATAATG
* *
1418209 TAATAAAGTAAAATAATAATG
1 TAATAAAGAAAAAAAATAATG
1418230 TAATA
1 TAATA
1418235 TAATATAAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.64, C:0.02, G:0.06, T:0.28
Consensus pattern (21 bp):
TAATAAAGAAAAAAAATAATG
Found at i:1419004 original size:36 final size:37
Alignment explanation
Indices: 1418954--1419026 Score: 114
Period size: 37 Copynumber: 2.0 Consensus size: 37
1418944 AACATAGCAA
*
1418954 AATTCTATCCTA-TTTTTAGGAG-TTGAATCCTAGTAG
1 AATTCTATCATATTTTTTA-GAGTTTGAATCCTAGTAG
1418990 AATTCTATCATATTTTTTAGAGTTTGAATCCTAGTAG
1 AATTCTATCATATTTTTTAGAGTTTGAATCCTAGTAG
1419027 GACGAAAAAG
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
36 14 0.41
37 20 0.59
ACGTcount: A:0.29, C:0.12, G:0.15, T:0.44
Consensus pattern (37 bp):
AATTCTATCATATTTTTTAGAGTTTGAATCCTAGTAG
Found at i:1430981 original size:14 final size:14
Alignment explanation
Indices: 1430962--1430993 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
1430952 CACTTAGGAC
1430962 ATTTAATGAATGTA
1 ATTTAATGAATGTA
1430976 ATTTAATGAATGTA
1 ATTTAATGAATGTA
1430990 ATTT
1 ATTT
1430994 TACAAAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.41, C:0.00, G:0.12, T:0.47
Consensus pattern (14 bp):
ATTTAATGAATGTA
Found at i:1431353 original size:55 final size:55
Alignment explanation
Indices: 1431287--1431397 Score: 222
Period size: 55 Copynumber: 2.0 Consensus size: 55
1431277 TCAGGTTAAC
1431287 ACATCATGTAAGAATCTACCATCGAAAGTCAAACATTACATAATAAGTTCACTTT
1 ACATCATGTAAGAATCTACCATCGAAAGTCAAACATTACATAATAAGTTCACTTT
1431342 ACATCATGTAAGAATCTACCATCGAAAGTCAAACATTACATAATAAGTTCACTTT
1 ACATCATGTAAGAATCTACCATCGAAAGTCAAACATTACATAATAAGTTCACTTT
1431397 A
1 A
1431398 ACACAAGGAA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.29
Consensus pattern (55 bp):
ACATCATGTAAGAATCTACCATCGAAAGTCAAACATTACATAATAAGTTCACTTT
Found at i:1443007 original size:157 final size:160
Alignment explanation
Indices: 1442721--1443037 Score: 613
Period size: 157 Copynumber: 2.0 Consensus size: 160
1442711 TGTTGTGAAA
1442721 AGTGGTAGTGAAAGTATACTGATATGGCTATGGTATGGATGATGAAACAAAGAACGATTGGTGAG
1 AGTGGTAGTGAAAGTATACTGATATGGCTATGGTATGGATGATGAAACAAAGAACGATTGGTGAG
1442786 GATACTATCTTAGAAAAACCAAGGAAGAACCAGTGCTACAACGAGCAAATACCCAGTCTTACATA
66 GATACTATCTTAGAAAAACCAAGGAAGAACCAGTGCTACAACGAGCAAATACCCAGTCTTACATA
1442851 TCTTTCTAAGGGGT-GT-A-AAAGGACTTG
131 TCTTTCTAAGGGGTGGTAACAAAGGACTTG
1442878 AGTGGTAGTGAAAGTATACTGATATGGCTATGGTATGGATGATGAAACAAAGAACGATTGGTGAG
1 AGTGGTAGTGAAAGTATACTGATATGGCTATGGTATGGATGATGAAACAAAGAACGATTGGTGAG
1442943 GATACTATCTTAGAAAAACCAAGGAAGAACCAGTGCTACAACGAGCAAATACCCAGTCTTACATA
66 GATACTATCTTAGAAAAACCAAGGAAGAACCAGTGCTACAACGAGCAAATACCCAGTCTTACATA
1443008 TCTTTCTAAGGGGTGGTAACAAAGGACTTG
131 TCTTTCTAAGGGGTGGTAACAAAGGACTTG
1443038 GACCCACTAT
Statistics
Matches: 157, Mismatches: 0, Indels: 3
0.98 0.00 0.02
Matches are distributed among these distances:
157 144 0.92
158 2 0.01
159 1 0.01
160 10 0.06
ACGTcount: A:0.37, C:0.14, G:0.25, T:0.24
Consensus pattern (160 bp):
AGTGGTAGTGAAAGTATACTGATATGGCTATGGTATGGATGATGAAACAAAGAACGATTGGTGAG
GATACTATCTTAGAAAAACCAAGGAAGAACCAGTGCTACAACGAGCAAATACCCAGTCTTACATA
TCTTTCTAAGGGGTGGTAACAAAGGACTTG
Found at i:1443263 original size:19 final size:20
Alignment explanation
Indices: 1443224--1443279 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 20
1443214 GAAATCCCTT
*
1443224 TGAAAATACATGATTTTTAA
1 TGAAAATACATGATCTTTAA
*
1443244 TGAAAATACATTA-CTTTAA
1 TGAAAATACATGATCTTTAA
* *
1443263 TGAACATACATGCTCTT
1 TGAAAATACATGATCTT
1443280 GGGCGAATGG
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
19 15 0.50
20 15 0.50
ACGTcount: A:0.41, C:0.12, G:0.09, T:0.38
Consensus pattern (20 bp):
TGAAAATACATGATCTTTAA
Found at i:1448934 original size:21 final size:23
Alignment explanation
Indices: 1448894--1448935 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
1448884 GTTTTGTTTT
*
1448894 ATAAAACATTCAATTTACTTATA
1 ATAAAACATACAATTTACTTATA
1448917 ATAAAACATAC-A-TTACTTA
1 ATAAAACATACAATTTACTTA
1448936 ATTAGACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 7 0.39
22 1 0.06
23 10 0.56
ACGTcount: A:0.50, C:0.14, G:0.00, T:0.36
Consensus pattern (23 bp):
ATAAAACATACAATTTACTTATA
Found at i:1449361 original size:54 final size:54
Alignment explanation
Indices: 1449350--1449660 Score: 523
Period size: 54 Copynumber: 5.8 Consensus size: 54
1449340 AAAATGATTG
1449350 TTCATCCACATAGGATGAATTCCGTGAAATGCACACTTAGTGCCGAAACGGTTA
1 TTCATCCACATAGGATGAATTCCGTGAAATGCACACTTAGTGCCGAAACGGTTA
* *
1449404 TTCATCCACATAGGATGAATTCCGTGAAATGCACACTTAGTGACGAAATGGTTA
1 TTCATCCACATAGGATGAATTCCGTGAAATGCACACTTAGTGCCGAAACGGTTA
* *
1449458 TTCATCCACATATGATGAATTCCGTGAAATGCACACTTAGTTCCGAAACGGTTA
1 TTCATCCACATAGGATGAATTCCGTGAAATGCACACTTAGTGCCGAAACGGTTA
1449512 TTCATCCACATAGGATGAATTCCGTGAAATGCACACTTAGTGCCGAAACGGTTA
1 TTCATCCACATAGGATGAATTCCGTGAAATGCACACTTAGTGCCGAAACGGTTA
** * *
1449566 TTCATCCACATAATATGAATTCCCTAAAATGCACACTTAGTGCCGAAACGGTTA
1 TTCATCCACATAGGATGAATTCCGTGAAATGCACACTTAGTGCCGAAACGGTTA
* * *
1449620 TTCATTCACATAGGATGAATTTCGTGAAATGCACACCTAGT
1 TTCATCCACATAGGATGAATTCCGTGAAATGCACACTTAGT
1449661 TCCTATTTGG
Statistics
Matches: 238, Mismatches: 19, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 238 1.00
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28
Consensus pattern (54 bp):
TTCATCCACATAGGATGAATTCCGTGAAATGCACACTTAGTGCCGAAACGGTTA
Found at i:1449462 original size:108 final size:108
Alignment explanation
Indices: 1449310--1449660 Score: 524
Period size: 108 Copynumber: 3.2 Consensus size: 108
1449300 TAAACATATT
* * * * * * * *
1449310 ATGAA-TCTCGTGAAGTGCCCATTTAGTGTCAAAATGATTGTTCATCCACATAGGATGAATTCCG
1 ATGAATTC-CGTGAAATGCACACTTAGTGACGAAATGGTTATTCATCCACATAAGATGAATTCCG
1449374 TGAAATGCACACTTAGTGCCGAAACGGTTATTCATCCACATAGG
65 TGAAATGCACACTTAGTGCCGAAACGGTTATTCATCCACATAGG
*
1449418 ATGAATTCCGTGAAATGCACACTTAGTGACGAAATGGTTATTCATCCACATATGATGAATTCCGT
1 ATGAATTCCGTGAAATGCACACTTAGTGACGAAATGGTTATTCATCCACATAAGATGAATTCCGT
*
1449483 GAAATGCACACTTAGTTCCGAAACGGTTATTCATCCACATAGG
66 GAAATGCACACTTAGTGCCGAAACGGTTATTCATCCACATAGG
* * * *
1449526 ATGAATTCCGTGAAATGCACACTTAGTGCCGAAACGGTTATTCATCCACATAATATGAATTCCCT
1 ATGAATTCCGTGAAATGCACACTTAGTGACGAAATGGTTATTCATCCACATAAGATGAATTCCGT
* *
1449591 AAAATGCACACTTAGTGCCGAAACGGTTATTCATTCACATAGG
66 GAAATGCACACTTAGTGCCGAAACGGTTATTCATCCACATAGG
* *
1449634 ATGAATTTCGTGAAATGCACACCTAGT
1 ATGAATTCCGTGAAATGCACACTTAGT
1449661 TCCTATTTGG
Statistics
Matches: 223, Mismatches: 19, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
108 221 0.99
109 2 0.01
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (108 bp):
ATGAATTCCGTGAAATGCACACTTAGTGACGAAATGGTTATTCATCCACATAAGATGAATTCCGT
GAAATGCACACTTAGTGCCGAAACGGTTATTCATCCACATAGG
Found at i:1451063 original size:16 final size:16
Alignment explanation
Indices: 1451039--1451069 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
1451029 AAATTAAAAT
*
1451039 AATAGAAATAAAATAC
1 AATAAAAATAAAATAC
1451055 AATAAAAATAAAATA
1 AATAAAAATAAAATA
1451070 TTAATATCGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.19
Consensus pattern (16 bp):
AATAAAAATAAAATAC
Found at i:1451333 original size:12 final size:12
Alignment explanation
Indices: 1451318--1451343 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
1451308 CAAATATTAT
1451318 AAATAATAAATA
1 AAATAATAAATA
1451330 AAATAATAAATA
1 AAATAATAAATA
1451342 AA
1 AA
1451344 TAAACAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (12 bp):
AAATAATAAATA
Found at i:1451499 original size:126 final size:126
Alignment explanation
Indices: 1451360--1451599 Score: 381
Period size: 126 Copynumber: 1.9 Consensus size: 126
1451350 ATGTTTGTAA
** * *
1451360 TGCAATAAAATAAAAGTCAATAGTTAGCAAAGTTTAAACCATAATAATGTGGATCATACCCCGGA
1 TGCAATAAAATAAAAGTCAATAGTTAGCAAAGTCCAAACCATAATAATGGGGATCATACCCCGAA
* **
1451425 TCGGGTCACCACAAGGTCGAATCGAATATTAGAAACAATATATAAATAATAATGGTTAAAG
66 TCGGGTCACCACAAGATCGAATCGAATAAAAGAAACAATATATAAATAATAATGGTTAAAG
* * * *
1451486 TGCAATAAAATAAAAGTTAGTAGTTAGTAGAGTCCAAACCATAATAATGGGGATCATACCCCGAA
1 TGCAATAAAATAAAAGTCAATAGTTAGCAAAGTCCAAACCATAATAATGGGGATCATACCCCGAA
1451551 TCGGGTCACCACAAGATCGAATCGAATAAAAGAAACAATATATAAATAA
66 TCGGGTCACCACAAGATCGAATCGAATAAAAGAAACAATATATAAATAA
1451600 ATAAAGAAAT
Statistics
Matches: 103, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
126 103 1.00
ACGTcount: A:0.45, C:0.15, G:0.17, T:0.23
Consensus pattern (126 bp):
TGCAATAAAATAAAAGTCAATAGTTAGCAAAGTCCAAACCATAATAATGGGGATCATACCCCGAA
TCGGGTCACCACAAGATCGAATCGAATAAAAGAAACAATATATAAATAATAATGGTTAAAG
Found at i:1451650 original size:29 final size:29
Alignment explanation
Indices: 1451618--1451682 Score: 105
Period size: 29 Copynumber: 2.2 Consensus size: 29
1451608 ATAAATAAAT
*
1451618 GTTAGAATGCAATAAAATAAAATTCAGTA
1 GTTAGAATGCAATAAAATAAAAGTCAGTA
1451647 GTTA-ATATGCAATAAAATAAAAGTCAGTA
1 GTTAGA-ATGCAATAAAATAAAAGTCAGTA
1451676 GTTAGAA
1 GTTAGAA
1451683 ATAAATAACA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
28 1 0.03
29 31 0.94
30 1 0.03
ACGTcount: A:0.51, C:0.06, G:0.15, T:0.28
Consensus pattern (29 bp):
GTTAGAATGCAATAAAATAAAAGTCAGTA
Found at i:1451689 original size:29 final size:29
Alignment explanation
Indices: 1451618--1451690 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 29
1451608 ATAAATAAAT
* * *
1451618 GTTAGAATGCAATAAAATAAAATTCAGTA
1 GTTAAAATGAAATAAAATAAAAGTCAGTA
* *
1451647 GTTAATATGCAATAAAATAAAAGTCAGTA
1 GTTAAAATGAAATAAAATAAAAGTCAGTA
1451676 GTTAGAAAT-AAATAA
1 GTTA-AAATGAAATAA
1451691 CATAGCAGAA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
29 35 0.92
30 3 0.08
ACGTcount: A:0.53, C:0.05, G:0.14, T:0.27
Consensus pattern (29 bp):
GTTAAAATGAAATAAAATAAAAGTCAGTA
Found at i:1453227 original size:55 final size:54
Alignment explanation
Indices: 1453088--1453227 Score: 172
Period size: 55 Copynumber: 2.5 Consensus size: 54
1453078 GATGACACAT
* * *
1453088 TTCCTACATGATGAGGACGTCTGTCTATCTTTAGAGATAAATAGAGATAACATGG
1 TTCCTACGTGATGAGGAAGTCTG-CTATCTTTAGAGATAAATAGAAATAACATGG
* * * * * *
1453143 TTCCAACGTGATGATGAAGTCTGGATATCTTTAGGGATAAATGGAAATAATATGG
1 TTCCTACGTGATGAGGAAGTCT-GCTATCTTTAGAGATAAATAGAAATAACATGG
1453198 TTCCTACGTGATGAGGAAGTCTAGCTATCT
1 TTCCTACGTGATGAGGAAGTCT-GCTATCT
1453228 AAGGGTGACA
Statistics
Matches: 71, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
55 70 0.99
56 1 0.01
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (54 bp):
TTCCTACGTGATGAGGAAGTCTGCTATCTTTAGAGATAAATAGAAATAACATGG
Found at i:1453527 original size:138 final size:137
Alignment explanation
Indices: 1453233--1453527 Score: 294
Period size: 138 Copynumber: 2.1 Consensus size: 137
1453223 TATCTAAGGG
* * *
1453233 TGACACGGCTCCTACGTGATGAGGATAGCTGACCATCTTTAGGGATATTGAAGATAACACAGTTC
1 TGACACGGTTCCTACGTGATAAGGATAGCTGACCAACTTTAGGGATATTGAAGATAACACAGTTC
** * * ** * *
1453298 CTACGTGATGAGGAAGTTTGGCTATCTAAGGGTGACACGACTCCTAAGTTATGAGGAGATCTGGT
66 CTACACGATGAGGAAGTCTAGCTATCTAAGGGTGACACGACTCCTAAGCGATGAGGACATATGGT
*** *
1453363 TGGTGGA
131 CAATAGA
* * *
1453370 TGGA-ACTGTTCTTACGTGATAAGGAT-GACTGGCCAACTTTAGGGATAATT-AGAGATAACACA
1 T-GACACGGTTCCTACGTGATAAGGATAG-CTGACCAACTTTAGGGAT-ATTGA-AGATAACACA
* * * *
1453432 GTTCCTACACGATTG-GGAAGTCTAGCTATCTAAGGTTGACGCTG-CTCTTACGCGATGAGGACA
62 GTTCCTACACGA-TGAGGAAGTCTAGCTATCTAAGGGTGACAC-GACTCCTAAGCGATGAGGACA
1453495 TATGGTCAATAGA
125 TATGGTCAATAGA
*
1453508 TGACACGGTTCCTAGGTGAT
1 TGACACGGTTCCTACGTGAT
1453528 GATGATAGTT
Statistics
Matches: 126, Mismatches: 25, Indels: 13
0.77 0.15 0.08
Matches are distributed among these distances:
136 1 0.01
137 38 0.30
138 84 0.67
139 3 0.02
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.27
Consensus pattern (137 bp):
TGACACGGTTCCTACGTGATAAGGATAGCTGACCAACTTTAGGGATATTGAAGATAACACAGTTC
CTACACGATGAGGAAGTCTAGCTATCTAAGGGTGACACGACTCCTAAGCGATGAGGACATATGGT
CAATAGA
Found at i:1453601 original size:36 final size:35
Alignment explanation
Indices: 1453554--1453811 Score: 124
Period size: 36 Copynumber: 7.7 Consensus size: 35
1453544 CTTTAAGGAT
1453554 AATTTGTTTCAAGAGAAACTATCTCAAGAGAGAAAA
1 AATTTGTTTCAAGAGAAACTATCTCAAGAGAG-AAA
* *
1453590 AATTTGTTTCAAGGGAAACGATCTCAA-AG-G---
1 AATTTGTTTCAAGAGAAACTATCTCAAGAGAGAAA
* * *
1453620 -TTTGTGTTTCAAGGGAAACTGTCTCAAGAGAGACAA
1 AATT-TGTTTCAAGAGAAACTATCTCAAGAGAGA-AA
*
1453656 AACTTGTTTCAAGAGAAA-TAATCT-AA-A-AG---
1 AATTTGTTTCAAGAGAAACT-ATCTCAAGAGAGAAA
* * * * *
1453685 -TTTATGTTTAAAGATAAACTGTCTCAAGATAGACAA
1 AATT-TGTTTCAAGAGAAACTATCTCAAGAGAGA-AA
* * *
1453721 AATTTATTTCAAGAGAAA-TAATCTTAA-AG-G--T
1 AATTTGTTTCAAGAGAAACT-ATCTCAAGAGAGAAA
** *
1453752 TGTATGTTTCAAGAGAAAC-AGTCTCAAGAGAGACAA
1 AATTTGTTTCAAGAGAAACTA-TCTCAAGAGAGA-AA
* *
1453788 AACTTGTTTCAAGAGAAACAATCT
1 AATTTGTTTCAAGAGAAACTATCT
1453812 TAAAGGTTGT
Statistics
Matches: 162, Mismatches: 32, Indels: 56
0.65 0.13 0.22
Matches are distributed among these distances:
28 1 0.01
29 17 0.10
30 25 0.15
31 22 0.14
32 5 0.03
33 3 0.02
34 3 0.02
35 7 0.04
36 75 0.46
37 4 0.02
ACGTcount: A:0.42, C:0.12, G:0.18, T:0.28
Consensus pattern (35 bp):
AATTTGTTTCAAGAGAAACTATCTCAAGAGAGAAA
Found at i:1453719 original size:65 final size:67
Alignment explanation
Indices: 1453558--1453849 Score: 385
Period size: 67 Copynumber: 4.4 Consensus size: 67
1453548 AAGGATAATT
* * * * * *
1453558 TGTTTCAAGAGAAACTATCTCAAGAGAGAAAAAATTTGTTTCAAGGGAAACGATCTCAAAGGTT-
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTGTTTCAAGAGAAACAATCTTAAAGGTTG
*
1453622 TG
66 TA
* * *
1453624 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAACTTGTTTCAAGAGAAATAATC-TAAAAGTT-
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTGTTTCAAGAGAAACAATCTTAAAGGTTG
1453687 TA
66 TA
* * * * * *
1453689 TGTTTAAAGATAAACTGTCTCAAGATAGACAAAATTTATTTCAAGAGAAATAATCTTAAAGGTTG
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTGTTTCAAGAGAAACAATCTTAAAGGTTG
1453754 TA
66 TA
*
1453756 TGTTTCAAGAGAAACAGTCTCAAGAGAGACAAAACTTGTTTCAAGAGAAACAATCTTAAAGGTTG
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTGTTTCAAGAGAAACAATCTTAAAGGTTG
1453821 TA
66 TA
*
1453823 TGTTTCAAGAGAAA-TCGTCTTAAGAGA
1 TGTTTCAAGAGAAACT-GTCTCAAGAGA
1453850 AATAGTCTTA
Statistics
Matches: 197, Mismatches: 26, Indels: 5
0.86 0.11 0.02
Matches are distributed among these distances:
65 56 0.28
66 55 0.28
67 86 0.44
ACGTcount: A:0.41, C:0.12, G:0.19, T:0.28
Consensus pattern (67 bp):
TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTGTTTCAAGAGAAACAATCTTAAAGGTTG
TA
Found at i:1453796 original size:132 final size:133
Alignment explanation
Indices: 1453558--1453836 Score: 400
Period size: 131 Copynumber: 2.1 Consensus size: 133
1453548 AAGGATAATT
* * *
1453558 TGTTTCAAGAGAAACTATCTCAAGAGAGAAAAAATTTGTTTCAAGGGAAACGATCTCAAAGGTTT
1 TGTTTCAAGAGAAACTATCTCAAGAGAGAAAAAATTTATTTCAAGAGAAACAATCTCAAAGGTTT
* * * *
1453623 GTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAACTTGTTTCAAGAGAAATAATC-TAAAAGTT
66 ATGTTTCAAGAGAAACAGTCTCAAGAGAGACAAAACTTGTTTCAAGAGAAACAATCTTAAAAGTT
1453687 -TA
131 GTA
* * * * * * *
1453689 TGTTTAAAGATAAACTGTCTCAAGATAGACAAAATTTATTTCAAGAGAAATAATCTTAAAGGTTG
1 TGTTTCAAGAGAAACTATCTCAAGAGAGAAAAAATTTATTTCAAGAGAAACAATCTCAAAGGTT-
*
1453754 TATGTTTCAAGAGAAACAGTCTCAAGAGAGACAAAACTTGTTTCAAGAGAAACAATCTTAAAGGT
65 TATGTTTCAAGAGAAACAGTCTCAAGAGAGACAAAACTTGTTTCAAGAGAAACAATCTTAAAAGT
1453819 TGTA
130 TGTA
1453823 TGTTTCAAGAGAAA
1 TGTTTCAAGAGAAA
1453837 TCGTCTTAAG
Statistics
Matches: 128, Mismatches: 17, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
131 54 0.42
132 53 0.41
133 7 0.05
134 14 0.11
ACGTcount: A:0.42, C:0.11, G:0.19, T:0.28
Consensus pattern (133 bp):
TGTTTCAAGAGAAACTATCTCAAGAGAGAAAAAATTTATTTCAAGAGAAACAATCTCAAAGGTTT
ATGTTTCAAGAGAAACAGTCTCAAGAGAGACAAAACTTGTTTCAAGAGAAACAATCTTAAAAGTT
GTA
Found at i:1453845 original size:31 final size:31
Alignment explanation
Indices: 1453727--1453836 Score: 112
Period size: 31 Copynumber: 3.4 Consensus size: 31
1453717 ACAAAATTTA
*
1453727 TTTCAAGAGAAATAATCTTAAAGGTTGTATG
1 TTTCAAGAGAAACAATCTTAAAGGTTGTATG
* * ****
1453758 TTTCAAGAGAAACAGTCTCAAGAGAGACAAAACTTG
1 TTTCAAGAGAAACAATCTTAA-AG-G-TTGTA--TG
1453794 TTTCAAGAGAAACAATCTTAAAGGTTGTATG
1 TTTCAAGAGAAACAATCTTAAAGGTTGTATG
1453825 TTTCAAGAGAAA
1 TTTCAAGAGAAA
1453837 TCGTCTTAAG
Statistics
Matches: 61, Mismatches: 13, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
31 32 0.52
32 2 0.03
33 2 0.03
34 2 0.03
35 2 0.03
36 21 0.34
ACGTcount: A:0.42, C:0.11, G:0.19, T:0.28
Consensus pattern (31 bp):
TTTCAAGAGAAACAATCTTAAAGGTTGTATG
Found at i:1453849 original size:15 final size:15
Alignment explanation
Indices: 1453829--1453864 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
1453819 TGTATGTTTC
*
1453829 AAGAGAAATCGTCTT
1 AAGAGAAATAGTCTT
1453844 AAGAGAAATAGTCTT
1 AAGAGAAATAGTCTT
1453859 AAGAGA
1 AAGAGA
1453865 GACAAAACTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.47, C:0.08, G:0.22, T:0.22
Consensus pattern (15 bp):
AAGAGAAATAGTCTT
Found at i:1458253 original size:29 final size:29
Alignment explanation
Indices: 1458216--1458275 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
1458206 TGAATGATGT
*
1458216 ATGTGAAAATGATTGAATAAATGGAATGC
1 ATGTGAAAATGATTAAATAAATGGAATGC
* *
1458245 ATGTTAAAATGCTTAAATAAATGGAATGC
1 ATGTGAAAATGATTAAATAAATGGAATGC
1458274 AT
1 AT
1458276 AATGTAAATG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.45, C:0.05, G:0.20, T:0.30
Consensus pattern (29 bp):
ATGTGAAAATGATTAAATAAATGGAATGC
Found at i:1460987 original size:12 final size:12
Alignment explanation
Indices: 1460972--1460997 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
1460962 CAAATATTAG
1460972 AAATAATAAATA
1 AAATAATAAATA
1460984 AAATAATAAATA
1 AAATAATAAATA
1460996 AA
1 AA
1460998 CAAACAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (12 bp):
AAATAATAAATA
Found at i:1461082 original size:151 final size:146
Alignment explanation
Indices: 1460902--1461287 Score: 457
Period size: 143 Copynumber: 2.6 Consensus size: 146
1460892 AGTTAGCGGT
* * * *
1460902 TAGCAGAGTCCGAACC---ATAATGCGAATCATACCCCTGATCGGGTCACCATAAGGTGGAATCA
1 TAGCAGAGTCCGAACCATAATAATGCGGATCATACCCCAGATCGGGTCACCATAAGGTCGAATCG
* * *
1460964 AATATTAGAAATAATAAATAAAATAATAAATAAACAAACAAATAAATAAACAATGGTTAGAA-TT
66 AATATTAGAAACAATAAAT-AAATAATAAAT----AAACAAATAAAT-AACAATGATTA-AAGTG
1461028 CAATAAAATAAAAGTGAGT-AGG
124 CAATAAAATAAAAGTGAGTCAGG
* *
1461050 TAGCAGAGTCCAAACCATAATAATGCGGATCATACCCCAGATCGGGTCACCACAAGGTCGAATCG
1 TAGCAGAGTCCGAACCATAATAATGCGGATCATACCCCAGATCGGGTCACCATAAGGTCGAATCG
*
1461115 AATATTAGAAACAATAAAT--A-AATAAATAAATAAATAAATAACAATGATTAAAGTGCAATAAA
66 AATATTAGAAACAATAAATAAATAATAAATAAACAAATAAATAACAATGATTAAAGTGCAATAAA
**
1461177 ATAAAAGTGAGTCATT
131 ATAAAAGTGAGTCAGG
* * ** * *
1461193 TAGTAGAGTCTGAACCATAATAATGTAGATCATACTCCAGATCGGGTCATCATAAGGTCGAATCG
1 TAGCAGAGTCCGAACCATAATAATGCGGATCATACCCCAGATCGGGTCACCATAAGGTCGAATCG
*
1461258 AATGA-TAAAAACAATAAATAAATAAATAAA
66 AAT-ATTAGAAACAATAAATAAAT-AATAAA
1461288 CAATGGTTAG
Statistics
Matches: 207, Mismatches: 21, Indels: 21
0.83 0.08 0.08
Matches are distributed among these distances:
141 2 0.01
142 30 0.14
143 85 0.41
144 1 0.00
145 1 0.00
147 13 0.06
148 16 0.08
151 59 0.29
ACGTcount: A:0.48, C:0.14, G:0.15, T:0.22
Consensus pattern (146 bp):
TAGCAGAGTCCGAACCATAATAATGCGGATCATACCCCAGATCGGGTCACCATAAGGTCGAATCG
AATATTAGAAACAATAAATAAATAATAAATAAACAAATAAATAACAATGATTAAAGTGCAATAAA
ATAAAAGTGAGTCAGG
Found at i:1461136 original size:4 final size:4
Alignment explanation
Indices: 1461127--1461155 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
1461117 TATTAGAAAC
1461127 AATA AATA AATA AATA AATA AATA AATA A
1 AATA AATA AATA AATA AATA AATA AATA A
1461156 CAATGATTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AATA
Found at i:1461325 original size:29 final size:29
Alignment explanation
Indices: 1461293--1461357 Score: 105
Period size: 29 Copynumber: 2.2 Consensus size: 29
1461283 ATAAACAATG
1461293 GTTAGAATGCAATAAAATAAAAGTCAGTA
1 GTTAGAATGCAATAAAATAAAAGTCAGTA
*
1461322 GTTA-ATATGCAATAAAATAAAAGTTAGTA
1 GTTAGA-ATGCAATAAAATAAAAGTCAGTA
1461351 GTTAGAA
1 GTTAGAA
1461358 ATAAATAACA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
28 1 0.03
29 31 0.94
30 1 0.03
ACGTcount: A:0.51, C:0.05, G:0.17, T:0.28
Consensus pattern (29 bp):
GTTAGAATGCAATAAAATAAAAGTCAGTA
Found at i:1461364 original size:29 final size:29
Alignment explanation
Indices: 1461293--1461365 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 29
1461283 ATAAACAATG
* *
1461293 GTTAGAATGCAATAAAATAAAAGTCAGTA
1 GTTAAAATGAAATAAAATAAAAGTCAGTA
* * *
1461322 GTTAATATGCAATAAAATAAAAGTTAGTA
1 GTTAAAATGAAATAAAATAAAAGTCAGTA
1461351 GTTAGAAAT-AAATAA
1 GTTA-AAATGAAATAA
1461366 CATAGCAGAA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
29 35 0.92
30 3 0.08
ACGTcount: A:0.53, C:0.04, G:0.15, T:0.27
Consensus pattern (29 bp):
GTTAAAATGAAATAAAATAAAAGTCAGTA
Found at i:1464183 original size:24 final size:24
Alignment explanation
Indices: 1464120--1464183 Score: 83
Period size: 24 Copynumber: 2.7 Consensus size: 24
1464110 AAACGGAGAT
* *
1464120 ATCAGAAATCAAAAAAGAATTCAG
1 ATCAGAAATCAAAACAGAATCCAG
* *
1464144 ATCAGATATCATAACAGAATCCAG
1 ATCAGAAATCAAAACAGAATCCAG
*
1464168 ATCAGAAATCAGAACA
1 ATCAGAAATCAAAACA
1464184 TAATTCTGGT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.53, C:0.17, G:0.12, T:0.17
Consensus pattern (24 bp):
ATCAGAAATCAAAACAGAATCCAG
Found at i:1466463 original size:17 final size:17
Alignment explanation
Indices: 1466433--1466466 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
1466423 TCGAAAACAT
*
1466433 AAAATATGACTTTTCGA
1 AAAATATGAATTTTCGA
*
1466450 AAAATTTGAATTTTCGA
1 AAAATATGAATTTTCGA
1466467 TCAAAATCAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.41, C:0.09, G:0.12, T:0.38
Consensus pattern (17 bp):
AAAATATGAATTTTCGA
Found at i:1472024 original size:39 final size:39
Alignment explanation
Indices: 1471946--1472211 Score: 349
Period size: 39 Copynumber: 6.8 Consensus size: 39
1471936 GTTTTAAGAA
* **
1471946 AAACAATCTCAAGTTAGAT-AAATCTTCTGTTT-GAAGTG
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCG-AGTG
* *
1471984 AAACTATCTCAAGCAAGATAAAA-CATTCTGTTTTGAGTG
1 AAACTATCTCAAGCGAGATAAAATC-TTCTGTTTCGAGTG
1472023 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
*
1472062 AAACTATCTCAAGCGAGATAAAATCTTTTGTTTCGAGTG
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
* **
1472101 GAACTATCTCAAGCGAGATAAAAAATTCTGTTTCGAGTG
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
* * *
1472140 AAACTATCTGAAGCGAGATAAAATCTCCTGTTTCGAATG
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
* ** *
1472179 CAACTATCTCAAGTAAGATAAAATCTTTTGTTT
1 AAACTATCTCAAGCGAGATAAAATCTTCTGTTT
1472212 AAGAAAAACA
Statistics
Matches: 202, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
38 17 0.08
39 183 0.91
40 2 0.01
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.32
Consensus pattern (39 bp):
AAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
Found at i:1472140 original size:117 final size:117
Alignment explanation
Indices: 1471946--1472211 Score: 392
Period size: 117 Copynumber: 2.3 Consensus size: 117
1471936 GTTTTAAGAA
* * * *
1471946 AAACAATCTCAAGTTAGAT-AAATCTTCTGTTTGAAGTGAAACTATCTCAAGCAAGATAAAACAT
1 AAACTATCTCAAGTAAGATAAAATCTTTTGTTTGAAGTGAAACTATCTCAAGCAAGATAAAAAAT
* * *
1472010 TCTGTTTTGAGTGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
66 TCTGTTTCGAGTGAAACTATCTCAAGCGAGATAAAATCTCCTGTTTCGAATG
** * *
1472062 AAACTATCTCAAGCGAGATAAAATCTTTTGTTTCG-AGTGGAACTATCTCAAGCGAGATAAAAAA
1 AAACTATCTCAAGTAAGATAAAATCTTTTGTTT-GAAGTGAAACTATCTCAAGCAAGATAAAAAA
*
1472126 TTCTGTTTCGAGTGAAACTATCTGAAGCGAGATAAAATCTCCTGTTTCGAATG
65 TTCTGTTTCGAGTGAAACTATCTCAAGCGAGATAAAATCTCCTGTTTCGAATG
*
1472179 CAACTATCTCAAGTAAGATAAAATCTTTTGTTT
1 AAACTATCTCAAGTAAGATAAAATCTTTTGTTT
1472212 AAGAAAAACA
Statistics
Matches: 134, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
116 16 0.12
117 117 0.87
118 1 0.01
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.32
Consensus pattern (117 bp):
AAACTATCTCAAGTAAGATAAAATCTTTTGTTTGAAGTGAAACTATCTCAAGCAAGATAAAAAAT
TCTGTTTCGAGTGAAACTATCTCAAGCGAGATAAAATCTCCTGTTTCGAATG
Found at i:1472261 original size:117 final size:117
Alignment explanation
Indices: 1471946--1472275 Score: 317
Period size: 117 Copynumber: 2.8 Consensus size: 117
1471936 GTTTTAAGAA
* ** * * ** * * * *
1471946 AAACAATCTCAAGTTAGAT-AAATCTTCTGTTTGAAGTGAAACTATCTCAAGCAAGATAAAACAT
1 AAACTATCTCAAGCAAGATAAAATCTTTTGTTTCAAGAAAAACAATATCAAGCGAGATAAAAAAT
* * * *
1472010 TCTGTTTTGAGTGAAACTATCTCAAGCGAGATAAAATCTTCTGTTTCGAGTG
66 TCTGTTTCGAGTAAAACTATCTCAAGCGAGATAAAATCTCCTGTTTCGAATG
* * *** * *
1472062 AAACTATCTCAAGCGAGATAAAATCTTTTGTTTCGAGTGGAACTATCTCAAGCGAGATAAAAAAT
1 AAACTATCTCAAGCAAGATAAAATCTTTTGTTTCAAGAAAAACAATATCAAGCGAGATAAAAAAT
* *
1472127 TCTGTTTCGAGTGAAACTATCTGAAGCGAGATAAAATCTCCTGTTTCGAATG
66 TCTGTTTCGAGTAAAACTATCTCAAGCGAGATAAAATCTCCTGTTTCGAATG
* * ** * **
1472179 CAACTATCTCAAGTAAGATAAAATCTTTTGTTT-AAGAAAAACAATATGTAGTGA-A-ATGAAAT
1 AAACTATCTCAAGCAAGATAAAATCTTTTGTTTCAAGAAAAACAATATCAAGCGAGATAAAAAAT
*
1472241 GTCTTGTTTCGAGTAAAAACTATCTCATGCGAGAT
66 -TC-TGTTTCGAGT-AAAACTATCTCAAGCGAGAT
1472276 GAATCTTGTT
Statistics
Matches: 180, Mismatches: 30, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
114 5 0.03
115 3 0.02
116 38 0.21
117 134 0.74
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (117 bp):
AAACTATCTCAAGCAAGATAAAATCTTTTGTTTCAAGAAAAACAATATCAAGCGAGATAAAAAAT
TCTGTTTCGAGTAAAACTATCTCAAGCGAGATAAAATCTCCTGTTTCGAATG
Found at i:1472262 original size:78 final size:77
Alignment explanation
Indices: 1472180--1472534 Score: 396
Period size: 78 Copynumber: 4.5 Consensus size: 77
1472170 TTTCGAATGC
** *
1472180 AACTATCTCAAGTAAGATAAAATCTTTTGTTTAAGAAAAACAATATGTAGTGAAATGAAATGTCT
1 AACTATCTCAAGCGAGAT-AAATCTTGT-TTTAAGAAAAACAATATGTAGTGAAATGAAATGTCT
1472245 TGTTTCGAGT-AAA
64 TGTTTCGAGTAAAA
* * *
1472258 AACTATCTCATGCGAGATGAATCTTGTTTTAAGAAAAACAATCTGTAGTGAAATGAACA-GTCTT
1 AACTATCTCAAGCGAGATAAATCTTGTTTTAAGAAAAACAATATGTAGTGAAATGAA-ATGTCTT
1472322 GTTTCGAGTAAAA
65 GTTTCGAGTAAAA
* * * * * * *
1472335 AAATAATCCCAAGCGAGATGAATATTGTTTTAAGAAAAACAATATGTAATGAACTGAATTGTCTT
1 AACT-ATCTCAAGCGAGATAAATCTTGTTTTAAGAAAAACAATATGTAGTGAAATGAAATGTCTT
1472400 GTTTCGAGTAAAA
65 GTTTCGAGTAAAA
* * ** * *
1472413 AACTATCTCAAGCTAGACAAGCCTTGTTTTAAGAAAAACAATCT-TAAGTGAAATGAAATATCTT
1 AACTATCTCAAGCGAGATAAATCTTGTTTTAAGAAAAACAATATGT-AGTGAAATGAAATGTC-T
*
1472477 CTGTTTCGAGT--GA
64 -TGTTTCGAGTAAAA
*
1472490 AACTATCTCAAGCGAGATAAAATTTTATGTTTTAAGAAAAACAAT
1 AACTATCTCAAGCGAGAT-AAA-TCT-TGTTTTAAGAAAAACAAT
1472535 CTCAAGTGAG
Statistics
Matches: 234, Mismatches: 33, Indels: 18
0.82 0.12 0.06
Matches are distributed among these distances:
76 44 0.19
77 75 0.32
78 86 0.37
79 11 0.05
80 18 0.08
ACGTcount: A:0.41, C:0.12, G:0.16, T:0.32
Consensus pattern (77 bp):
AACTATCTCAAGCGAGATAAATCTTGTTTTAAGAAAAACAATATGTAGTGAAATGAAATGTCTTG
TTTCGAGTAAAA
Found at i:1472482 original size:41 final size:39
Alignment explanation
Indices: 1472437--1472553 Score: 110
Period size: 39 Copynumber: 3.0 Consensus size: 39
1472427 AGACAAGCCT
* *
1472437 TGTTTTAAGAAAAACAATCTTAAGTGAAATGAAATATCTTC
1 TGTTTTAAGAAAAACAATCTCAAGTGAAAT-AAA-ATCTTA
** ** * * * *
1472478 TGTTTCGAGTGAAACTATCTCAAGCGAGATAAAATTTTA
1 TGTTTTAAGAAAAACAATCTCAAGTGAAATAAAATCTTA
*
1472517 TGTTTTAAGAAAAACAATCTCAAGTGAGAT-AAATCTT
1 TGTTTTAAGAAAAACAATCTCAAGTGAAATAAAATCTT
1472554 CGCATGAAAT
Statistics
Matches: 59, Mismatches: 17, Indels: 3
0.75 0.22 0.04
Matches are distributed among these distances:
38 6 0.10
39 28 0.47
40 3 0.05
41 22 0.37
ACGTcount: A:0.41, C:0.11, G:0.15, T:0.33
Consensus pattern (39 bp):
TGTTTTAAGAAAAACAATCTCAAGTGAAATAAAATCTTA
Found at i:1472503 original size:154 final size:154
Alignment explanation
Indices: 1472161--1472534 Score: 436
Period size: 155 Copynumber: 2.4 Consensus size: 154
1472151 AGCGAGATAA
* * * ** * *
1472161 AATCTCCTGTTTCGAATGCAACTATCTCAAGTAAGATAAAATCTTTTGTTTAAGAAAAACAATAT
1 AATCTTCTGTTTCGAGTGAAACTATCTCAAGCGAGATAAAATATTGT-TTTAAGAAAAACAATAT
* * * *
1472226 GTAGTGAAATGAAATGTCTTGTTTCGAGTAAAAACTATCTCATGCGAGATGAATCTTGTTTTAAG
65 GTAATGAAATGAAATGTCTTGTTTCGAGTAAAAACTATCTCAAGCGAGATCAACCTTGTTTTAAG
1472291 AAAAACAATCTGTAGTGAAATGAAC
130 AAAAACAATCTGTAGTGAAATGAAC
* * * * *
1472316 AGTC-T-TGTTTCGAGTAAAAAAATAATCCCAAGCGAGAT-GAATATTGTTTTAAGAAAAACAAT
1 AATCTTCTGTTTCGAGT--GAAACT-ATCTCAAGCGAGATAAAATATTGTTTTAAGAAAAACAAT
* * *
1472378 ATGTAATGAACTGAATTGTCTTGTTTCGAGTAAAAAACTATCTCAAGCTAGA-CAAGCCTTGTTT
63 ATGTAATGAAATGAAATGTCTTGTTTCGAGT-AAAAACTATCTCAAGCGAGATCAA-CCTTGTTT
1472442 TAAGAAAAACAATCT-TAAGTGAAATGAA-
126 TAAGAAAAACAATCTGT-AGTGAAATGAAC
*
1472470 ATATCTTCTGTTTCGAGTGAAACTATCTCAAGCGAGATAAAATTTTATGTTTTAAGAAAAACAAT
1 A-ATCTTCTGTTTCGAGTGAAACTATCTCAAGCGAGATAAAA-TAT-TGTTTTAAGAAAAACAAT
1472535 CTCAAGTGAG
Statistics
Matches: 182, Mismatches: 25, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
153 9 0.05
154 60 0.33
155 71 0.39
156 14 0.08
157 28 0.15
ACGTcount: A:0.40, C:0.13, G:0.16, T:0.32
Consensus pattern (154 bp):
AATCTTCTGTTTCGAGTGAAACTATCTCAAGCGAGATAAAATATTGTTTTAAGAAAAACAATATG
TAATGAAATGAAATGTCTTGTTTCGAGTAAAAACTATCTCAAGCGAGATCAACCTTGTTTTAAGA
AAAACAATCTGTAGTGAAATGAAC
Found at i:1477288 original size:20 final size:21
Alignment explanation
Indices: 1477253--1477292 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
1477243 ACCTAATTTA
1477253 AAAAAATAAAATAACAATAAT
1 AAAAAATAAAATAACAATAAT
*
1477274 AAAAAATTAAA-AACAATAA
1 AAAAAATAAAATAACAATAA
1477293 AAACAACGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.17
Consensus pattern (21 bp):
AAAAAATAAAATAACAATAAT
Found at i:1479208 original size:21 final size:21
Alignment explanation
Indices: 1479184--1479227 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
1479174 GGTTTATCAT
1479184 TTTAAACTCTCATTTTATTTA
1 TTTAAACTCTCATTTTATTTA
*** *
1479205 TTTATTTTCTCATTTTTTTTA
1 TTTAAACTCTCATTTTATTTA
1479226 TT
1 TT
1479228 ATCCTAACAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.20, C:0.11, G:0.00, T:0.68
Consensus pattern (21 bp):
TTTAAACTCTCATTTTATTTA
Found at i:1480271 original size:19 final size:20
Alignment explanation
Indices: 1480232--1480267 Score: 58
Period size: 18 Copynumber: 1.9 Consensus size: 20
1480222 GGATAATAAT
1480232 ATAAGTAATGAAAATAAATA
1 ATAAGTAATGAAAATAAATA
1480252 ATAAG-AATG-AAATAAA
1 ATAAGTAATGAAAATAAA
1480268 ATAAAGAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.44
19 4 0.25
20 5 0.31
ACGTcount: A:0.67, C:0.00, G:0.11, T:0.22
Consensus pattern (20 bp):
ATAAGTAATGAAAATAAATA
Found at i:1484822 original size:19 final size:20
Alignment explanation
Indices: 1484783--1484818 Score: 58
Period size: 18 Copynumber: 1.9 Consensus size: 20
1484773 GGATAATAAT
1484783 ATAAGTAATGAAAATAAATA
1 ATAAGTAATGAAAATAAATA
1484803 ATAAG-AATG-AAATAAA
1 ATAAGTAATGAAAATAAA
1484819 ATAAAGAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.44
19 4 0.25
20 5 0.31
ACGTcount: A:0.67, C:0.00, G:0.11, T:0.22
Consensus pattern (20 bp):
ATAAGTAATGAAAATAAATA
Found at i:1502300 original size:2 final size:2
Alignment explanation
Indices: 1502293--1502329 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
1502283 TAACAACATG
1502293 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1502330 GTTTGTTTGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:1510735 original size:26 final size:24
Alignment explanation
Indices: 1510706--1510756 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 24
1510696 TATTATTATT
1510706 ATCTCGAATTAACATATTGTGTAACA
1 ATCT-GAA-TAACATATTGTGTAACA
* *
1510732 ATCTTAATAACATATTTTGTAACA
1 ATCTGAATAACATATTGTGTAACA
1510756 A
1 A
1510757 GTATATTGTC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 17 0.74
25 2 0.09
26 4 0.17
ACGTcount: A:0.41, C:0.14, G:0.08, T:0.37
Consensus pattern (24 bp):
ATCTGAATAACATATTGTGTAACA
Done.