Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008426.1 Hibiscus syriacus cultivar Beakdansim tig00111210_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4445546
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 16 of 18
Found at i:3661218 original size:30 final size:30
Alignment explanation
Indices: 3661169--3661250 Score: 110
Period size: 30 Copynumber: 2.7 Consensus size: 30
3661159 CTTACCATAG
* * *
3661169 CACTGAGTGTCATTACACACTACAATGCTA
1 CACTAAGTGTCCTTACACACTACAATGATA
* *
3661199 CACTAAGTGTCCTTCCACACTACAATGATG
1 CACTAAGTGTCCTTACACACTACAATGATA
*
3661229 CACTAAGTATCCTTACACACTA
1 CACTAAGTGTCCTTACACACTA
3661251 TGGTGCCAAT
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 45 1.00
ACGTcount: A:0.33, C:0.29, G:0.11, T:0.27
Consensus pattern (30 bp):
CACTAAGTGTCCTTACACACTACAATGATA
Found at i:3662168 original size:20 final size:20
Alignment explanation
Indices: 3662145--3662189 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
3662135 GCAGTATTGA
3662145 TACCA-TGAAGGGGGTATCAG
1 TACCATTGAA-GGGGTATCAG
*
3662165 TACCATTGAAGGGGTATCGG
1 TACCATTGAAGGGGTATCAG
3662185 TACCA
1 TACCA
3662190 AGCAAATATC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 19 0.83
21 4 0.17
ACGTcount: A:0.29, C:0.18, G:0.31, T:0.22
Consensus pattern (20 bp):
TACCATTGAAGGGGTATCAG
Found at i:3662695 original size:59 final size:59
Alignment explanation
Indices: 3662603--3662920 Score: 408
Period size: 59 Copynumber: 5.4 Consensus size: 59
3662593 AGTGATTACC
3662603 ATAGGGCACTTTGTGTGCTAACATGAGAAGAAATTCATACTAAGTGTATGGATTTCCGT
1 ATAGGGCACTTTGTGTGCTAACATGAGAAGAAATTCATACTAAGTGTATGGATTTCCGT
* *
3662662 ATAGGGCACTTTGTGTGTTAACATGAGAAGAAATTCATA-TAAGTGTATGGATTTCCAT
1 ATAGGGCACTTTGTGTGCTAACATGAGAAGAAATTCATACTAAGTGTATGGATTTCCGT
* * *
3662720 ATAGGGCACTTTGTGCGCTAACATAACATGAGAAGAAATTCATAATAAATGTATGGATTTCCGT
1 ATAGGGCACTTTGT--G-T-GC-TAACATGAGAAGAAATTCATACTAAGTGTATGGATTTCCGT
* * **
3662784 ATAGGGCAC--TATATGCTAACATGAGAAGAAATTCATACTAAGTGTATGGATTTATGT
1 ATAGGGCACTTTGTGTGCTAACATGAGAAGAAATTCATACTAAGTGTATGGATTTCCGT
* * * * * * *
3662841 ATAGGGCAATATGTGTGCTAACATGATAAGAAGTTCATACTAAGTTTATGAATTTTCGT
1 ATAGGGCACTTTGTGTGCTAACATGAGAAGAAATTCATACTAAGTGTATGGATTTCCGT
* *
3662900 ATTGGGCACCTTGTGTGCTAA
1 ATAGGGCACTTTGTGTGCTAA
3662921 AATTATGAAA
Statistics
Matches: 225, Mismatches: 26, Indels: 16
0.84 0.10 0.06
Matches are distributed among these distances:
57 45 0.20
58 33 0.15
59 96 0.43
60 1 0.00
61 1 0.00
62 2 0.01
63 21 0.09
64 26 0.12
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.33
Consensus pattern (59 bp):
ATAGGGCACTTTGTGTGCTAACATGAGAAGAAATTCATACTAAGTGTATGGATTTCCGT
Found at i:3662793 original size:122 final size:121
Alignment explanation
Indices: 3662621--3662864 Score: 364
Period size: 122 Copynumber: 2.0 Consensus size: 121
3662611 CTTTGTGTGC
* * * * *
3662621 TAACATGAGAAGAAATTCATACTAAGTGTATGGATTTCCGTATAGGGCACTTTGTGTGTTAACAT
1 TAACATGAGAAGAAATTCATAATAAATGTATGGATTTCCGTATAGGGCAC--TATATGCTAACAT
* * *
3662686 GAGAAGAAATTCATA-TAAGTGTATGGATTTCCATATAGGGCACTTTGTGCGCTAACA
64 GAGAAGAAATTCATACTAAGTGTATGGATTTACATATAGGGCAATATGTGCGCTAACA
3662743 TAACATGAGAAGAAATTCATAATAAATGTATGGATTTCCGTATAGGGCACTATATGCTAACATGA
1 TAACATGAGAAGAAATTCATAATAAATGTATGGATTTCCGTATAGGGCACTATATGCTAACATGA
** *
3662808 GAAGAAATTCATACTAAGTGTATGGATTTATGTATAGGGCAATATGTGTGCTAACA
66 GAAGAAATTCATACTAAGTGTATGGATTTACATATAGGGCAATATGTGCGCTAACA
3662864 T
1 T
3662865 GATAAGAAGT
Statistics
Matches: 110, Mismatches: 11, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
120 25 0.23
121 37 0.34
122 48 0.44
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.32
Consensus pattern (121 bp):
TAACATGAGAAGAAATTCATAATAAATGTATGGATTTCCGTATAGGGCACTATATGCTAACATGA
GAAGAAATTCATACTAAGTGTATGGATTTACATATAGGGCAATATGTGCGCTAACA
Found at i:3674233 original size:116 final size:117
Alignment explanation
Indices: 3674018--3674260 Score: 339
Period size: 116 Copynumber: 2.1 Consensus size: 117
3674008 CCCAGAGGGT
* *
3674018 ACTTTGTGTACTAACATGAGAATAAATTCATACTAAGTGTATCGATTTTCGTATAGGGTACTTTG
1 ACTTTGTGTA-TAACATGAGAAGAAATTCATACTAAGTGTATCGATTTTCGTATAGGGAACTTTG
* * *
3674083 TGTGATAACATGAGAAGAAATTCATACTAAGTGTATGGATTTCCGTATAGAGC
65 TGTGATAACATGAGAAAAAACTCATACTAAGTGTATGAATTTCCGTATAGAGC
3674136 ACTTTGTGT-TAACATGAGAAGAAATTCATACTAAGTGTAT-GAATTTT-GTATAGGGAACTTTC
1 ACTTTGTGTATAACATGAGAAGAAATTCATACTAAGTGTATCG-ATTTTCGTATAGGGAACTTT-
* * * * *
3674198 GTGTGCTAACATGATAAAAAACTCATACTAAGTGTATGAATTTCTGTATTGGGC
64 GTGTGATAACATGAGAAAAAACTCATACTAAGTGTATGAATTTCCGTATAGAGC
*
3674252 ACCTTGTGT
1 ACTTTGTGT
3674261 GCTAAAATTA
Statistics
Matches: 112, Mismatches: 11, Indels: 6
0.87 0.09 0.05
Matches are distributed among these distances:
115 14 0.12
116 89 0.79
118 9 0.08
ACGTcount: A:0.33, C:0.12, G:0.20, T:0.35
Consensus pattern (117 bp):
ACTTTGTGTATAACATGAGAAGAAATTCATACTAAGTGTATCGATTTTCGTATAGGGAACTTTGT
GTGATAACATGAGAAAAAACTCATACTAAGTGTATGAATTTCCGTATAGAGC
Found at i:3674262 original size:59 final size:59
Alignment explanation
Indices: 3674021--3674265 Score: 300
Period size: 59 Copynumber: 4.2 Consensus size: 59
3674011 AGAGGGTACT
* * * * *
3674021 TTGTGTACTAACATGAGAATAAATTCATACTAAGTGTATCGATTTTC-GTATAGGGTACT
1 TTGTGTGCTAACATGAGAAGAAATTCATACTAAGTGTAT-GAATTTCTGTATAGGGCACC
* * * *
3674080 TTGTGTGATAACATGAGAAGAAATTCATACTAAGTGTATGGATTTCCGTATAGAGCA-C
1 TTGTGTGCTAACATGAGAAGAAATTCATACTAAGTGTATGAATTTCTGTATAGGGCACC
* * *
3674138 TT-TGTGTTAACATGAGAAGAAATTCATACTAAGTGTATGAATTT-TGTATAGGGAACT
1 TTGTGTGCTAACATGAGAAGAAATTCATACTAAGTGTATGAATTTCTGTATAGGGCACC
* * * *
3674195 TTCGTGTGCTAACATGATAAAAAACTCATACTAAGTGTATGAATTTCTGTATTGGGCACC
1 TT-GTGTGCTAACATGAGAAGAAATTCATACTAAGTGTATGAATTTCTGTATAGGGCACC
3674255 TTGTGTGCTAA
1 TTGTGTGCTAA
3674266 AATTATGAAA
Statistics
Matches: 160, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
56 8 0.05
57 42 0.26
58 7 0.04
59 91 0.57
60 12 0.08
ACGTcount: A:0.33, C:0.12, G:0.20, T:0.35
Consensus pattern (59 bp):
TTGTGTGCTAACATGAGAAGAAATTCATACTAAGTGTATGAATTTCTGTATAGGGCACC
Found at i:3674895 original size:2 final size:2
Alignment explanation
Indices: 3674888--3674925 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
3674878 GCCTAACATC
3674888 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3674926 TAGTGATCAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:3680747 original size:23 final size:22
Alignment explanation
Indices: 3680707--3680751 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
3680697 TCATGTCTTT
*
3680707 TTTTTCGAACAGTTTTTTTTTC
1 TTTTTCGAACAGTATTTTTTTC
*
3680729 TTTTTCGAACTGCTATTTTTTTC
1 TTTTTCGAACAG-TATTTTTTTC
3680752 AACATTTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.13, C:0.16, G:0.09, T:0.62
Consensus pattern (22 bp):
TTTTTCGAACAGTATTTTTTTC
Found at i:3693441 original size:15 final size:16
Alignment explanation
Indices: 3693413--3693442 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
3693403 TAGTGACTAT
3693413 ATTGAAATGATTTAAA
1 ATTGAAATGATTTAAA
3693429 ATTGAAA-GATTTAA
1 ATTGAAATGATTTAA
3693443 GCGAATAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.50, C:0.00, G:0.13, T:0.37
Consensus pattern (16 bp):
ATTGAAATGATTTAAA
Found at i:3694658 original size:80 final size:81
Alignment explanation
Indices: 3694529--3695953 Score: 1571
Period size: 80 Copynumber: 17.9 Consensus size: 81
3694519 TGTTTAAAGT
* * * *
3694529 AAAGACTAAATACCTAGTTATGCATTTGGAAG-AAGGTGTGAATCATGCCAGTTAGATGAAAGGT
1 AAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGT
*
3694593 TAAATATCTTTGAGTA
66 TAAATACCTTTGAGTA
* * * * *
3694609 AAAGA-TTAATGCCTAGGTCTGCATTTGGCAGAAAGGTGCCAATCATGCCAGTTAGATGAAAAGT
1 AAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGT
* *
3694673 TAAATACCTTTAACTA
66 TAAATACCTTTGAGTA
** * * * *
3694689 AAAGACTAAATAACTAGGTGTGTATTTGGCAGAAAGGTGCCAATCATGCCAGTTAGATGAAAGTT
1 AAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGT
*
3694754 TAATTACCTTTGAGT-
66 TAAATACCTTTGAGTA
* *
3694769 AAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGTTGTCAGTCATGCCAGTTAGATG-AAGGT
1 AAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGT
*
3694833 TAAATACATTTGAGTA
66 TAAATACCTTTGAGTA
* * *
3694849 AAAGACTAAATGACTAGTTGTGCATTTGGAAGAAAGGTGACAATCATG-CAGTTAGATGAAAGGT
1 AAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGT
3694913 TAAATACCTTTGAGTA
66 TAAATACCTTTGAGTA
* * * *
3694929 AAAGACTAAATGCCTAGTTGTACATTTGGCAAAAAGGTGGCAATCAT--TA-TCTAGATGAAAGG
1 AAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGT-TAGATGAAAGG
*
3694991 TTAAATACCTTTGTGT-
65 TTAAATACCTTTGAGTA
* * *
3695007 AAAGACTAAATGACTAGTTATGCATTTGGTAG-AAGGTGTCAATCATG-CAGTTAGATGAAAGGT
1 AAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGT
*
3695070 TAAATATCTTTGAGTA
66 TAAATACCTTTGAGTA
* * * * * * * * *
3695086 AAAGACTCAATGTCTAGCTATGCGTTTGCCAAAAATGTGTCAATCATGCCAGTTAGATGAAATGT
1 AAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGT
*
3695151 TAAATACCTTTGATTA
66 TAAATACCTTTGAGTA
** * * * * * ** *
3695167 AAAGACTAAATGATTAGCTGTGCAATTAGCAAAAATGTACCAA-CAAAGCCAGTT-GATGAAAGG
1 AAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATC-ATGCCAGTTAGATGAAAGG
3695230 TTAAATACCTTTGAGTA
65 TTAAATACCTTTGAGTA
* * * * * ** * * * *
3695247 GAAGACT-AATACCTAGTTGTGCTTTTGGTA-ATATTTGTCAATTATTCCAGTTAGGTGAAATGT
1 AAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGT
*
3695310 TAAATTCCTTTGAGTA
66 TAAATACCTTTGAGTA
* ** * * * * *
3695326 AAAGAATGTATGCCTAGCTGTGCGTTTAGCAGAAAAGTGTCAATCATGCTAGTTAGATGAAAGGT
1 AAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGT
3695391 TAAATACCTTTGAGTA
66 TAAATACCTTTGAGTA
* ** * * *
3695407 AAAGACAAAATGTGTAGCTGTGAATTTGGCAGAAA--TGTCAATCTTGCCAGTTAGATGAAAGGT
1 AAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGT
3695470 T-AATACCTTTGAGTA
66 TAAATACCTTTGAGTA
* * * * * * *
3695485 AATGACTAATTGCCTAGCTGTGCATTTAGTAAAAAGGTGTCAATCATG-AAGTTAGATGAAAGG-
1 AAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGT
3695548 TAAATACCTTTGAGTA
66 TAAATACCTTTGAGTA
* * * *
3695564 AAAGACTAAATGCCTAG--GTGCATTTAGAATAAAGGTGTCAATCATTCCAGTTAGATGAAAGGT
1 AAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGT
3695627 T-AATACCTTTGAGTA
66 TAAATACCTTTGAGTA
* * *
3695642 AAAGACTAAATGCCTAGTTGTGTATTT-ACAGAAAGGTGACAATCATGCCAGTTAGATGAAAGGT
1 AAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGT
*
3695706 TAAATACCATTGAGTA
66 TAAATACCTTTGAGTA
* * * * **
3695722 AAAGGCTAAATTCCTAGTTGTGCATTTGGTAGAAATGTACCAATCAT--CAGTTAGATGAAAGGT
1 AAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGT
*
3695785 T-AATATCTTTGAGT-
66 TAAATACCTTTGAGTA
* **
3695799 AAAGACTAAAT-CCTAGTTGTGCATTTGG-ACGAAAGGTGACAATCATGAGAGTTAGATGAAA-G
1 AAAGACTAAATGCCTAGTTGTGCATTTGGCA-GAAAGGTGTCAATCATGCCAGTTAGATGAAAGG
3695861 TTAAATACCTTTGAGTA
65 TTAAATACCTTTGAGTA
** * ** * * * *
3695878 AAAGACTAAATGCCTAACTGTGCATTTAGCCTAAAGGGGCCAATAATGCAAGTTAGATGAAAGGT
1 AAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGT
*
3695943 TAAATGCCTTT
66 TAAATACCTTT
3695954 AAAGGTTAAA
Statistics
Matches: 1138, Mismatches: 175, Indels: 63
0.83 0.13 0.05
Matches are distributed among these distances:
75 1 0.00
76 30 0.03
77 52 0.05
78 189 0.17
79 276 0.24
80 364 0.32
81 226 0.20
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.30
Consensus pattern (81 bp):
AAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGT
TAAATACCTTTGAGTA
Found at i:3695436 original size:478 final size:473
Alignment explanation
Indices: 3694526--3695904 Score: 1652
Period size: 478 Copynumber: 2.9 Consensus size: 473
3694516 AATTGTTTAA
* *
3694526 AGTAAAGACTAAAT-ACCTAGTTATGCATTTGGAAGAAGGTGTGAATCATGCCAGTTAGATGAAA
1 AGTAAAGACTAAATGA-CTAGTTATGCATTTGGTAGAAGGTGTCAATCATG-CAGTTAGATGAAA
* * * *
3694590 GGTTAAATATCTTTGAGTAAAAGA-TTAATGCCTAGGTCTGCATTTGGCAGAAAGGTGCCAATCA
64 GGTTAAATATCTTTGAGTAAAAGACTAAATGCCTA-GTATGCATTT-GCAAAAAGGTGTCAATCA
* * * *
3694654 TGCCAGTTAGATGAAAAGTTAAATACCTTTAACTAAAAGACTAAATAACTAGGTGTGTATTTGGC
127 TGCCAGTTAGATGAAAAGTTAAATACCTTTGACTAAAAGACTAAATGACTAGCTGTGTATTTAGC
* * * *
3694719 AGAAAGGTGCCAATCATGCCAGTTAGATGAAAGTTTAATTACCTTTGAGTAAAGACTAAATGCCT
192 AGAAAGGTACCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAGACTAAATACCT
* * * * * *
3694784 AGTTGTGCATTTGGCAGAAAGTTGTCAGTCATGCCAGTTAGATG-AAGGTTAAATACATTTGAGT
257 AGTTGTGCATTTGGTAGAAATTTGTCAATCATTCCAGTTAGATGAAAGGTTAAATTCCTTTGAGT
*
3694848 AAAAGACTAAATGACTAGTTGTGCATTTGGAAGAAAGGTGACAATCATGCAGTTAGATGAAAGGT
322 AAAAGACTAAATGCCTAGTTGTGCATTT-GAAGAAAGGTGACAATCATGCAGTTAGATGAAAGGT
*
3694913 TAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTACATTTGGCAAAAAGGTGGCAATCATT-
386 TAAATACCTTTGAGTAAAAGACTAAATGCCTAGCTGTACATTTGGCAAAAA--TGGCAATC-TTC
3694977 A-TCTAGATGAAAGGTTAAATACCTTTG
448 AGT-TAGATGAAAGGTT-AATACCTTTG
*
3695004 TGTAAAGACTAAATGACTAGTTATGCATTTGGTAGAAGGTGTCAATCATGCAGTTAGATGAAAGG
1 AGTAAAGACTAAATGACTAGTTATGCATTTGGTAGAAGGTGTCAATCATGCAGTTAGATGAAAGG
* * * *
3695069 TTAAATATCTTTGAGTAAAAGACTCAATGTCTAGCTATGCGTTTGCCAAAAATGTGTCAATCATG
66 TTAAATATCTTTGAGTAAAAGACTAAATGCCTAG-TATGCATTTG-CAAAAAGGTGTCAATCATG
* * * * * *
3695134 CCAGTTAGATGAAATGTTAAATACCTTTGATTAAAAGACTAAATGATTAGCTGTGCAATTAGCAA
129 CCAGTTAGATGAAAAGTTAAATACCTTTGACTAAAAGACTAAATGACTAGCTGTGTATTTAGCAG
* *
3695199 AAATGTACCAA-CAAAGCCAGTT-GATGAAAGGTTAAATACCTTTGAGTAGAAGACT-AATACCT
194 AAAGGTACCAATC-ATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTA-AAGACTAAATACCT
* * * * *
3695261 AGTTGTGCTTTTGGTA-ATATTTGTCAATTATTCCAGTTAGGTGAAATGTTAAATTCCTTTGAGT
257 AGTTGTGCATTTGGTAGAAATTTGTCAATCATTCCAGTTAGATGAAAGGTTAAATTCCTTTGAGT
* ** * * * * *
3695325 AAAAGAATGTATGCCTAGCTGTGCGTTTAGCAGAAAAGTGTCAATCATGCTAGTTAGATGAAAGG
322 AAAAGACTAAATGCCTAGTTGTGCATTT-GAAGAAAGGTGACAATCATGC-AGTTAGATGAAAGG
* ** * *
3695390 TTAAATACCTTTGAGTAAAAGACAAAATGTGTAGCTGTGA-ATTTGGCAGAAATGTCAATCTTGC
385 TTAAATACCTTTGAGTAAAAGACTAAATGCCTAGCTGT-ACATTTGGCAAAAATGGCAATCTT--
3695454 CAGTTAGATGAAAGGTTAATACCTTTG
447 CAGTTAGATGAAAGGTTAATACCTTTG
* * * * * * *
3695481 AGTAAATGACTAATTGCCTAGCTGTGCATTTAGTAAAAAGGTGTCAATCATGAAGTTAGATGAAA
1 AGTAAA-GACTAAATGACTAGTTATGCATTTGGT-AGAAGGTGTCAATCATGCAGTTAGATGAAA
* *
3695546 GG-TAAATACCTTTGAGTAAAAGACTAAATGCCTAG-GTGCATTTAG-AATAAAGGTGTCAATCA
64 GGTTAAATATCTTTGAGTAAAAGACTAAATGCCTAGTATGCATTT-GCAA-AAAGGTGTCAATCA
* * * * *
3695608 TTCCAGTTAGATGAAAGGTT-AATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGTATTTA-C
127 TGCCAGTTAGATGAAAAGTTAAATACCTTTGACTAAAAGACTAAATGACTAGCTGTGTATTTAGC
* * *
3695671 AGAAAGGTGA-CAATCATGCCAGTTAGATGAAAGGTTAAATACCATTGAGTAAAAGGCTAAATTC
192 AGAAAGGT-ACCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGT-AAAGACTAAATAC
* **
3695735 CTAGTTGTGCATTTGGTAGAAATGTACCAATCA-T-CAGTTAGATGAAAGGTT-AATAT-CTTTG
255 CTAGTTGTGCATTTGGTAGAAATTTGTCAATCATTCCAGTTAGATGAAAGGTTAAAT-TCCTTTG
* *
3695796 AGT-AAAGACTAAAT-CCTAGTTGTGCATTTGGACGAAAGGTGACAATCATGAGAGTTAGATGAA
319 AGTAAAAGACTAAATGCCTAGTTGTGCATTT-GAAGAAAGGTGACAATCATG-CAGTTAGATGAA
* *
3695859 A-GTTAAATACCTTTGAGTAAAAGACTAAATGCCTAACTGTGCATTT
382 AGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGCTGTACATTT
3695905 AGCCTAAAGG
Statistics
Matches: 770, Mismatches: 105, Indels: 59
0.82 0.11 0.06
Matches are distributed among these distances:
471 39 0.05
472 41 0.05
473 8 0.01
474 29 0.04
475 87 0.11
476 88 0.11
477 166 0.22
478 279 0.36
479 33 0.04
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.30
Consensus pattern (473 bp):
AGTAAAGACTAAATGACTAGTTATGCATTTGGTAGAAGGTGTCAATCATGCAGTTAGATGAAAGG
TTAAATATCTTTGAGTAAAAGACTAAATGCCTAGTATGCATTTGCAAAAAGGTGTCAATCATGCC
AGTTAGATGAAAAGTTAAATACCTTTGACTAAAAGACTAAATGACTAGCTGTGTATTTAGCAGAA
AGGTACCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAGACTAAATACCTAGTT
GTGCATTTGGTAGAAATTTGTCAATCATTCCAGTTAGATGAAAGGTTAAATTCCTTTGAGTAAAA
GACTAAATGCCTAGTTGTGCATTTGAAGAAAGGTGACAATCATGCAGTTAGATGAAAGGTTAAAT
ACCTTTGAGTAAAAGACTAAATGCCTAGCTGTACATTTGGCAAAAATGGCAATCTTCAGTTAGAT
GAAAGGTTAATACCTTTG
Found at i:3697418 original size:14 final size:14
Alignment explanation
Indices: 3697399--3697426 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
3697389 TAGCATTAAC
3697399 TGCTATGAAGTTAT
1 TGCTATGAAGTTAT
3697413 TGCTATGAAGTTAT
1 TGCTATGAAGTTAT
3697427 CAGTCTTCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.43
Consensus pattern (14 bp):
TGCTATGAAGTTAT
Found at i:3700725 original size:79 final size:80
Alignment explanation
Indices: 3700579--3700948 Score: 389
Period size: 79 Copynumber: 4.7 Consensus size: 80
3700569 GTTTCAAAGT
* * * * *
3700579 AAAGACTAAATGCCTAGCTATGCATTTGGC-ATAAGGTATCAATCAAGCCAGTTAGATGAAAGGT
1 AAAGACTAAATGCCTAGCTGTGCATTTGGCAAAAAGGTGTCAATCATGCCAGTTAGATGAAAGAT
3700643 TAAATACCTTT-GTA
66 TAAATACCTTTAGTA
* * * *
3700657 AAAGACAAAATGTCTAGCTGTGCATTTGGCAAAAAGGTGTCAATCATGCCAGTTGGATGAAATAT
1 AAAGACTAAATGCCTAGCTGTGCATTTGGCAAAAAGGTGTCAATCATGCCAGTTAGATGAAAGAT
*
3700722 TAAATACCTTTGACTA
66 TAAATACCTTT-AGTA
* * * * * * * *
3700738 AAAGACTATATGTCTAGCTGTGAAATTGGCAGAAAGGTGACAATCTTGCCAGTTAGATGAAAGGT
1 AAAGACTAAATGCCTAGCTGTGCATTTGGCAAAAAGGTGTCAATCATGCCAGTTAGATGAAAGAT
3700803 TAAATACCTTTAAGT-
66 TAAATACCTTT-AGTA
* * * *
3700818 AAA-ACTAAATGCCTAGCTGTGCATTTGGC-AGAAGGTG-CAATCATGTCAGTTATATGAAAAGG
1 AAAGACTAAATGCCTAGCTGTGCATTTGGCAAAAAGGTGTCAATCATGCCAGTTAGATG-AAAGA
*
3700880 TTAAATACCTTTGGGTA
65 TTAAATACCTTT-AGTA
** * *
3700897 AAAGACTAAATG-C-ATTTGTACATTTGG-AAGAAATGTGTCAATCATGCCAGTT
1 AAAGACTAAATGCCTAGCTGTGCATTTGGCAA-AAAGGTGTCAATCATGCCAGTT
3700949 CTGTGCATTT
Statistics
Matches: 244, Mismatches: 39, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
77 16 0.07
78 64 0.26
79 70 0.29
80 24 0.10
81 70 0.29
ACGTcount: A:0.36, C:0.14, G:0.21, T:0.29
Consensus pattern (80 bp):
AAAGACTAAATGCCTAGCTGTGCATTTGGCAAAAAGGTGTCAATCATGCCAGTTAGATGAAAGAT
TAAATACCTTTAGTA
Found at i:3701037 original size:115 final size:114
Alignment explanation
Indices: 3700834--3701063 Score: 385
Period size: 115 Copynumber: 2.0 Consensus size: 114
3700824 AAATGCCTAG
*
3700834 CTGTGCATTTGGCAGAAGGTGCAATCATGTCAGTTATATGAAAAGGTTAAATACCTTTGGGTAAA
1 CTGTGCATTTGGCAGAAGGTGCAATCATGCCAGTTATATGAAAAGGTTAAATACCTTTGGGTAAA
3700899 AGACTAAATGCATTTGTACATTTGGAAGAAATGTGTCAATCATGCCAGTT
66 AGACTAAATGCATTTGTA-ATTTGGAAGAAATGTGTCAATCATGCCAGTT
3700949 CTGTGCATTTGGCAGAAGGTGCAAATCATGCCAGTTATATGAAAAAGGTTAAATACCTTTGGGT-
1 CTGTGCATTTGGCAGAAGGTGC-AATCATGCCAGTTATATG-AAAAGGTTAAATACCTTTGGGTA
3701013 AAA-ACTAAATGCATATTTGT-ATTTGGAAGAAATGTGTCAATCATGCCAGTT
64 AAAGACTAAATGC--ATTTGTAATTTGGAAGAAATGTGTCAATCATGCCAGTT
3701064 ATATGAAAGG
Statistics
Matches: 110, Mismatches: 1, Indels: 8
0.92 0.01 0.07
Matches are distributed among these distances:
115 62 0.56
116 20 0.18
117 28 0.25
ACGTcount: A:0.33, C:0.13, G:0.22, T:0.31
Consensus pattern (114 bp):
CTGTGCATTTGGCAGAAGGTGCAATCATGCCAGTTATATGAAAAGGTTAAATACCTTTGGGTAAA
AGACTAAATGCATTTGTAATTTGGAAGAAATGTGTCAATCATGCCAGTT
Found at i:3701154 original size:81 final size:81
Alignment explanation
Indices: 3700950--3713411 Score: 14278
Period size: 81 Copynumber: 156.2 Consensus size: 81
3700940 ATGCCAGTTC
* *
3700950 TGTGCATTTGGCAG-AAGGTG-CAAATCATGCCAGTTATATGAAAAAGGTTAAATACCTTTGGGT
1 TGTGCATTTGGCAGAAAGGTGTC-AATCATGCCAGTTAGATG--AAAGGTTAAATACCTTTGAGT
*
3701013 -AAA-ACTAAATGCATA-T
63 AAAAGACTAAATGCCTAGT
* * * * * ***
3701029 T-TGTATTTGGAAGAAATGTGTCAATCATGCCAGTTATATGAAAGGCTAAATATAATTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
*
3701093 AGACTAAATGCATAGT
66 AGACTAAATGCCTAGT
* * *
3701109 TGTGCATTTGGAAGAAAGGTTTCAATCATGCCAGTTAGATTAAAGGTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
*
3701174 AGACTAAATGCATAGT
66 AGACTAAATGCCTAGT
* * *
3701190 TGTGCATTTGGAAGAAAGGT-ACAAATCATGCCAGTTAGATTAAAGGTTAAATACCATTT-AGTA
1 TGTGCATTTGGCAGAAAGGTGTC-AATCATGCCAGTTAGATGAAAGGTTAAATACC-TTTGAGTA
* *
3701253 AAAGACTAACTGACTA-T
64 AAAGACTAAATGCCTAGT
* *
3701270 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTTAATACCCTTGAGTAA
1 -TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* *
3701335 AAGTCTAAATGACTAGT
65 AAGACTAAATGCCTAGT
* * * *
3701352 TGTGCATTCGACATAAAGGTGTCAACCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3701417 AGACTAAATGTCTAGC
66 AGACTAAATGCCTAGT
* * * * * * *
3701433 TGTGCATTTGGTAGAAAGGTGCCAATCATGCTAGTTATATGAAAGGTTAACTACCATTT-TGTAG
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACC-TTTGAGTAA
* *
3701497 AAGACTAATTGACTAGT
65 AAGACTAAATGCCTAGT
* * * * * *
3701514 TGTGCATTTGGGAAAAAGGTGACAATCATGCCAGTTAGATAAAAGGTTAAATAACTTTGAGTAGA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3701579 AGAC-AAATGCGTAGA
66 AGACTAAATGCCTAGT
* * * * *
3701594 TGTTCATTTGGTAGAAAGGT-TCCAATCATGCCAGTTAGATGAAAGGTTAAAAATCTTTGACTAA
1 TGTGCATTTGGCAGAAAGGTGT-CAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * *
3701658 AAGATTAAGTGCCTAGC
65 AAGACTAAATGCCTAGT
* * * * *
3701675 AGTGCATTTGGTAGAAATGTGTCAATCACGCCAGTTAGATGAAAAGTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
*
3701740 AGACTAAATGCCTAGC
66 AGACTAAATGCCTAGT
** * * * * * * *
3701756 TACGTATTTTGCAGAAAGTTGTCAATCATGCCAGTTATATGAAAGGCTAAATATCTTTAAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3701821 AGACTAAATGCATACT
66 AGACTAAATGCCTAGT
* *
3701837 TCTGCATTTGGGAGAAAGGTG-CAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3701901 AGAATAAATGCATAGT
66 AGACTAAATGCCTAGT
* * * *
3701917 TGTGCATTTGGCAGAAAGGTGTGAATCATGCCAGTTAGATTAAAGGTTAAATA-TTTATGGGTAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTT-TGAGTAA
3701981 AAGACTAAATGCCTA-T
65 AAGACTAAATGCCTAGT
** * * * * *
3701997 CTGTGCATTTTCCAGAAAGGTGCCAATCATGTCAGTTAGATGAAAGGTCAAGTACCTTTGGGTAA
1 -TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
*
3702062 AAGACTAAATGTCTAGT
65 AAGACTAAATGCCTAGT
* * *
3702079 TATGCATTTGGCAGAATGGTGTCAATCATGCTAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3702144 AGACTGAATGCCTAGA
66 AGACTAAATGCCTAGT
* * * *
3702160 TGTGCATTTGGTAGAAAGGT-ACCATCATGCCAGTTAGATGAAAGGTCAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
*
3702224 AGACTAAATGTCTAGT
66 AGACTAAATGCCTAGT
* * * * * *
3702240 TGTACATTTGGCAAAAAAGTGTCAATCATACAAGTTAGATGAAACGTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3702305 AGACTTAATGCCTAGA
66 AGACTAAATGCCTAGT
* * *
3702321 TGTGCATTTGGTAGAAAGGTGTCAATCATGCTAGTTAGATGAAAGGTTAAATACCTTTGAATAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3702386 AGATTAAATGCCTAGC
66 AGACTAAATGCCTAGT
* * *
3702402 TGTGCATTTTG-ATG-AAGAGTGTCAATCATGCTAGTTAGATGAAAGGTTAAACACCTTTGAGTA
1 TGTGCATTTGGCA-GAAAG-GTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTA
* *
3702465 AAAGAAT-AATGCCTAGA
64 AAAGACTAAATGCCTAGT
* * * * * *
3702482 TGTGTATTTTGCA-AAA-ATGTCAATGATGCCAGTTAGATGAAAGGTTAAATACCTTTAACTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3702545 ATACTAAATGCATAGT
66 AGACTAAATGCCTAGT
* * * * * *
3702561 TATGCATTTGGCAGAAAGGT-TCCACTCAGGCCTGTTAGATGAAAGGTTAAATACCATTGAGTTA
1 TGTGCATTTGGCAGAAAGGTGT-CAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
*
3702625 AAGACTAAATGCATAGT
65 AAGACTAAATGCCTAGT
* * * *
3702642 TGTGCATTTGG-AAAAATGGTGTGAATCATGCCAGTTAGATTAAAGGTTAAATACATTTGAGTAA
1 TGTGCATTTGGCAGAAA-GGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
*
3702706 AAGACTAAATGCTTA-T
65 AAGACTAAATGCCTAGT
* * * * * *
3702722 ACGCGCATTTGGCATAAAGGTGCCAATCATGCCAGTTAGATGAAAGGTCAAATACCTTTGGGTAA
1 -TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
*
3702787 AAGACTAAATGTCTAGT
65 AAGACTAAATGCCTAGT
* *
3702804 T-AGCATTTGGCAGAATGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3702868 AGACTGAATGCCTAGA
66 AGACTAAATGCCTAGT
* ** *
3702884 TGTGCATTTGGTAGAAAGGTACCAATCATGCCAGTTAGATGAAAGGTCAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
*
3702949 AGACTAAATGTCTAGT
66 AGACTAAATGCCTAGT
* * * * * *
3702965 TGTACATTTGGCAAAAAAGTGTCAATCATACAAGTTAGATGAAACGTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3703030 AGACTTAATGCCTAGA
66 AGACTAAATGCCTAGT
* *
3703046 TGTGCATTTGGTAGAAAGGTGTCAATCATGCTAGTTAGATGAAA-GTTAAATACCTTTGA--AAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3703108 AGATTAAATGCCTAGC
66 AGACTAAATGCCTAGT
* * *
3703124 TGTGCATTTTG-ATG-AAGAGTGTCAATCATGCTAGTTAGATGAAAGGTTAAACACCTTTGAGTA
1 TGTGCATTTGGCA-GAAAG-GTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTA
* *
3703187 AAAGAATAAATGCCTAGA
64 AAAGACTAAATGCCTAGT
* * * * *
3703205 TGTGTATTTTGCAAAAAGGTGTCAATGATGCCAGTTAGATGAAAGGTTAAATACCTTTGACT---
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
*
3703267 A-ACTAAATGCATAGT
66 AGACTAAATGCCTAGT
* * * * *
3703282 TATGCATTTGGCAG-AAGGT-TCCACTCA-GCCTGTTAGATGAAAGGTTAAATACCATTGAGTTA
1 TGTGCATTTGGCAGAAAGGTGT-CAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
*
3703344 AAGACTAAATGCATAGT
65 AAGACTAAATGCCTAGT
* * *
3703361 TGTGCATTTGGCA-AAATGGTGTGAATCATGCCAGTTAGATTAAAGGTTAAATACATTTGAGTAA
1 TGTGCATTTGGCAGAAA-GGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
*
3703425 AAGACTAAATGCTTA-T
65 AAGACTAAATGCCTAGT
* * * * * *
3703441 ACGCGCATTTGGCAGAAAGGTGCCAATCATGCCAGTTAGATGAAAGGTCAAATACCTTTGGGTTA
1 -TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
*
3703506 AAGACTAAATGTCTAGT
65 AAGACTAAATGCCTAGT
* * *
3703523 TATGCATTTGGCAGAATGGTATCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGT-AA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3703587 A-ACTGAATGCCTAGA
66 AGACTAAATGCCTAGT
* ** * *
3703602 TGTGCATTTGGTAGAAAGGTACCAATCATGCCAGTTAGATGAAAGGTCAAATATCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
*
3703667 AGACTAAATGTCTAGT
66 AGACTAAATGCCTAGT
* * * * *
3703683 TGTGCATTTGGCAAAAAAGTGTCAATCATACAAGTTAGATGAAACGTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3703748 AGACTTAATGCCTAGA
66 AGACTAAATGCCTAGT
* * *
3703764 TGTGCATTTGGTAGAAAGGTGTCAATCATGCTAGTTAGATGAAAGGTTAAATACCTTTGAATAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3703829 AGATTAAATGCCTAGC
66 AGACTAAATGCCTAGT
* * * *
3703845 TGTGCATTTTG-ATG-GAGAGTGTCAATCATGCTAGTTAGATGAAAGGTTAAACACCTTTGAGTA
1 TGTGCATTTGGCA-GAAAG-GTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTA
* *
3703908 AAAGAATAAATGCCTAGA
64 AAAGACTAAATGCCTAGT
* * * * *
3703926 TGTGTATTTTGC--AAA--TGTCAATGATGCCAATTAGATGAAAGGTTAAATACCTTTGACTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
*
3703987 ATACTAAATG-CT--T
66 AGACTAAATGCCTAGT
* * * * * *
3704000 TATGCATTTGGCAGAAAGGT-TCCACTCAGGCCTGTT--ATGAAAGGTTAAATACCATTGAGTTA
1 TGTGCATTTGGCAGAAAGGTGT-CAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
*
3704062 AAGACTAAATGCATAGT
65 AAGACTAAATGCCTAGT
* * * *
3704079 TGTGCATTTGGCA-AAATGCTGTGAATCATGCCAGTTAGATTAAAGGTTAAATACATTTGAGTAA
1 TGTGCATTTGGCAGAAA-GGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
*
3704143 AAGACTAAATGCTTA-T
65 AAGACTAAATGCCTAGT
* * * * *
3704159 ACGCGCATTTGGCAGAAAGGTGCCAATCATGCCAGTTAGATGAAAGGTCAAATACCTTTGGGTAA
1 -TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
*
3704224 AAGACTAAATGTCTAGT
65 AAGACTAAATGCCTAGT
* * *
3704241 TATGCATTTGGCAGAATGGTGTCAATCATGCTAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3704306 AGACTGAATGCCTAGA
66 AGACTAAATGCCTAGT
* ** * * *
3704322 TGTGCATTTGGTAGAAAGGTACCAATCATGCCAGTTAGATGAAAGGTCAAGTACCTTTGGGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
*
3704387 AGACTAAATGTCTAG-
66 AGACTAAATGCCTAGT
* *
3704402 TGATGCATTTGGCAGAATGGTGTCAATCATGCTAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
1 TG-TGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* *
3704467 AAGACTGAATGCCTAGA
65 AAGACTAAATGCCTAGT
* ** *
3704484 TGTGCATTTGGTAGAAAGGTACCAATCATGCCAGTTAGATGAAAGGTCAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
*
3704549 AGACTAAATGTCTAGT
66 AGACTAAATGCCTAGT
* * * * * *
3704565 TGTACATTTGGCAAAAAAGTGTCAATCATACAAGTTAGATGAAACGTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3704630 AGACTTAATGCCTAGA
66 AGACTAAATGCCTAGT
* * *
3704646 TGTGCATTTGGTAGAAAGGTGTCAATCATGCTAGTTAGATGAAAGGTTAAATACCTTTGAATAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3704711 AGATTAAATGCCTAGC
66 AGACTAAATGCCTAGT
* * *
3704727 TGTGCATTTTG-ATG-AAGAGTGTCAATCATGCTAGTTAGATGAAAGGTTAAACACCTTTGAGTA
1 TGTGCATTTGGCA-GAAAG-GTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTA
* *
3704790 AAAGAATAAATGCCTAGA
64 AAAGACTAAATGCCTAGT
* * * * * *
3704808 TGTGTATTTTGCAAAAATGG-GTC-ATGATGCCAGTTAGATGAAAGGTT-AA-ACCTTTAACTAA
1 TGTGCATTTGGCAGAAA-GGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* *
3704869 AATACTAAATGCATAGT
65 AAGACTAAATGCCTAGT
* * * * *
3704886 TATGCATTTGGCA-AAAGGT-TCCA-CA-GCCTGTT--ATGAAAGGTTAAATACCATTGAGTTAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
*
3704945 AGACTAAATGCATAGT
66 AGACTAAATGCCTAGT
* * *
3704961 TGTGCATTTGGCA-AAATGGTGTGAATCATGCCAGTTAGATTAAAGGTTAAATACATTTGAGTAA
1 TGTGCATTTGGCAGAAA-GGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
*
3705025 AAGACTAAATGCTTA-T
65 AAGACTAAATGCCTAGT
* * * * * *
3705041 ACGCGCATTTGGCATAAAGGTGCCAATCATGCCAGTTAGATGAAAGG-TCAATACCTTTGGGT-A
1 -TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
*
3705104 AAGACTAAA-GTCTAGT
65 AAGACTAAATGCCTAGT
* *
3705120 TATGCATTTGGCAGAATGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3705185 AGACTGAATGCCTAGA
66 AGACTAAATGCCTAGT
* ** *
3705201 TGTGCATTTGGTAGAAAGGTACCAATCATGCCAGTTAGATGAAAGGTCAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
*
3705266 AGACTAAATGTCTAGT
66 AGACTAAATGCCTAGT
* * * *
3705282 TGTACATTTGGCA-AAAAGTGTCAATCAT-ACAGTTAGATGAAACGTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3705345 AGACTTAATGCCTAGA
66 AGACTAAATGCCTAGT
* * *
3705361 TGTGCATTTGGTAGAAAGGTGTCAATCATGCTAGTTAGATGAAAGGTTAAATACCTTTGAATAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3705426 AGATTAAATGCCTAGC
66 AGACTAAATGCCTAGT
* * *
3705442 TGTGCATTT-G--G-AAGGTCTCAATCATGCTAGTTAGATGAAAGGTTAAACACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3705503 AGAATAAATGCCTAGA
66 AGACTAAATGCCTAGT
* * * * *
3705519 TGTGTATTT-GCAAAAAGGTGTCAATGATCCCAG-TAGATGAAAGGTTAAATACCTTTGACTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3705582 ATACTAAATGCATAGT
66 AGACTAAATGCCTAGT
* * * * * *
3705598 TATGCATTTGGCAGAAAGGT-TCCACTCAGGCCTGTTAGATGAAAGGTTAAATACCATTGAGTTA
1 TGTGCATTTGGCAGAAAGGTGT-CAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
*
3705662 AAGACTAAATGCATAGT
65 AAGACTAAATGCCTAGT
* * *
3705679 TGTGCATTTGGCA-AAATGGTGTGAATCATGCCAGTTAGATTAAAGGTTAAATACATTTGAGTAA
1 TGTGCATTTGGCAGAAA-GGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
*
3705743 AAGACTAAATGCTTA-T
65 AAGACTAAATGCCTAGT
* * * *
3705759 CGCGCATTTGGCAGAAAGGTGCCAATCATGCCAGTTAGATGAAAGGTCAAATACCTTTG-GTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
*
3705823 AGACTAAATGTCTAGT
66 AGACTAAATGCCTAGT
* *
3705839 TATGCATTTGGCAGAATGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3705904 AGACT-GATG-CTAGA
66 AGACTAAATGCCTAGT
* ** * *
3705918 TGTGCATTTGGTAGAAAGGTACCAATCAT----GTTAGATGAAAGGTCAAATATC-TTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
*
3705978 AGACTAAATGTCTAGT
66 AGACTAAATGCCTAGT
* * * * *
3705994 TGTGCATTTGGCAAAAAAGTGTCAATCATACAAGTTAGATGAAACGTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3706059 AGACTTAATGCCTAGA
66 AGACTAAATGCCTAGT
* * *
3706075 TGTGCATTTGGTAGAAAGGTGTCAATCATGCTAGTTAGATGAAAGGTTAAATACCTTTGAATAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3706140 AGATTAAATGCCTAGC
66 AGACTAAATGCCTAGT
*** * * *
3706156 TGTGCATTTGATGGAGA-GTGTCAATCATGCTAGTTAGATG-AAGGTT-AACACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
*
3706218 AGA-TAAATGCCTAGA
66 AGACTAAATGCCTAGT
* * * * *
3706233 TGTGTATTTTGCA-AAAGGTGTCAATGATGCCAATTAGATG-AAGGTTAAATACCTTTGACTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3706296 ATACT-AATGCATAGT
66 AGACTAAATGCCTAGT
* * * * *
3706311 TATGCATTTGGCAGAAAGGT-TCCACTCA-GCCTGTTAGATG--AGGTTAAATACCATTGAGTTA
1 TGTGCATTTGGCAGAAAGGTGT-CAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
*
3706372 AAGACTAAATGCATAGT
65 AAGACTAAATGCCTAGT
* * * *
3706389 TGTGCATTTGGCA-AAATGCTGTGAATCATGCCAGTTAGATTAAAGGTTAAATACATTTGAGTAA
1 TGTGCATTTGGCAGAAA-GGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
*
3706453 AAGACTAAATGCTTA-T
65 AAGACTAAATGCCTAGT
* * * *
3706469 ACGCGCATTTGGCAGAAAGGTGCCAATCATGCCAGTTAGATGAAAGGTCAAATACCTTTG-GTAA
1 -TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
*
3706533 AAGACTAAATGTCTAGT
65 AAGACTAAATGCCTAGT
* * *
3706550 TATGCATTTGGCAGAATGGTGTCAATCATGCTAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3706615 AGACTGAATGCCTAGA
66 AGACTAAATGCCTAGT
** *
3706631 TGTGCATTT----GAAAGGTACCAATCATGCCAGTTAGATGAAAGGTCAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
*
3706692 AGACTAAATGTCTAGT
66 AGACTAAATGCCTAGT
* * * *
3706708 TGTACATTT-GCA-AAAAGTGTCAATCAT-ACAGTT--ATGAAACGTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3706768 AGACTTAATGCCTAGA
66 AGACTAAATGCCTAGT
* * *
3706784 TGTGCATTTGGTAGAAAGGTGTCAATCATGCTAGTTAGATGAAAGGTTAAATACCTTTGAATAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3706849 AGA-TTAATGCCTAGC
66 AGACTAAATGCCTAGT
* * * *
3706864 TGTGCATTTTG-ATG-AAGATGTCAATCATGCTAGTTAGATGAAAGGTTAAACACCTTTGAGTAA
1 TGTGCATTTGGCA-GAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* *
3706927 AAGAATAAATGCCTAGA
65 AAGACTAAATGCCTAGT
* * * *
3706944 TGTGTATTTTGCA-AAA-GTGTCAATGATGCCAGTTAGATGAAAGGTTAAATACCTTTGACTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3707007 ATACTAAATGCATAGT
66 AGACTAAATGCCTAGT
* * * * * *
3707023 TATGCATTTGGCAGAAAGGT-TCCACTCA-GCCTGTTAGATGAAAGGTTAAATACCATTAAGTTA
1 TGTGCATTTGGCAGAAAGGTGT-CAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
*
3707086 AAGACT-AATGCATAGT
65 AAGACTAAATGCCTAGT
* * *
3707102 T-TGCATTTGGCA-AAATGGTGTGAATCATGCCAGTTAGATTAAAGGTTAAATACATTTGAGTAA
1 TGTGCATTTGGCAGAAA-GGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
*
3707165 AAGACTAAATGCTTA-T
65 AAGACTAAATGCCTAGT
* * * *
3707181 ACGCGCATTTGGCAGAAAGGTGCCAATCATGCCAGTTAGATGAAAGG-TCAA-A----T-AGTAA
1 -TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
*
3707239 AAGACTAAATGTCTAGT
65 AAGACTAAATGCCTAGT
* *
3707256 TGTGCATTTGGCA-AAA-GTGTCAATCATGCTAGTTAGATGAAACGTTAAATACC-TTGAGT-AA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3707317 AGACTTAATGCCTAGA
66 AGACTAAATGCCTAGT
* * * ** *
3707333 TGTGCA-TTGGTAGAAAATGTGTCAATCATGCTAGTTAGATGAAAGGTT-AATACCTTTTTGTAG
1 TGTGCATTTGGCAG-AAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* *
3707396 AAGACTAATTGACTAGT
65 AAGACTAAATGCCTAGT
* * * * *
3707413 TGTGCATTTAG-AAAAAGGTGCCAATCATGCCAGTTAGATAAAAGGTTAAATA-CTTTGAGTAGA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * *
3707476 AGACTAAAGGCGTAGA
66 AGACTAAATGCCTAGT
* * * *
3707492 TGTTCATTTGGTAGAAAGGT-TCAATCATG-CAGTTAAATG-AAGGTTAAATATCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * *
3707554 AGATTAAGTGCCTAGC
66 AGACTAAATGCCTAGT
* * * * * *
3707570 AGTGCATTTGGTAGAAATGTGTCAATCACGCCAGTTAGATGAAAAGTGAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3707635 AGACTAAATTCCTAGC
66 AGACTAAATGCCTAGT
** * * * * * * *
3707651 TACGTATTTTGTAGAAAGTTGTCAATCATGCCAGTTATATGAAAGGCTT-AATATCTTTAAGTAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGG-TTAAATACCTTTGAGTAA
*
3707715 AAGACTAAA-GCATA--
65 AAGACTAAATGCCTAGT
* * * *
3707729 T-CGCA-TTGGGAGAAAGGTGCCAAACATGCCAGTTAGATG-AAGGTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
*
3707791 AGAAT-AATG-CTAGT
66 AGACTAAATGCCTAGT
* * **
3707805 TGTGCATTTGGCAGAAAGGGGTGAATCATGCCAGTTAGAT-AAAGGTTAAATA--TTTCTGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
*
3707867 AGACTAAATACCTA-T
66 AGACTAAATGCCTAGT
* * * *
3707882 CTGTGCATTTGGCATAAATGTGCCAATCATGCCAGTTAGATGAAAGGTCAAATACCTTT-AGGTA
1 -TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGA-GTA
* *
3707946 AAATACTAAATGTCTAGT
64 AAAGACTAAATGCCTAGT
* * *
3707964 TATGCATTTGGCAGAATGGTGTCAATCATGCCAGTTAGATGAACGGTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3708029 AGACTGAATGCCTAGA
66 AGACTAAATGCCTAGT
* * *
3708045 TGTGCATTTGGTAGAAAGGTGCCAATCATGCCAGTTAGATGAAAGGTCAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
*
3708110 AGACTAAATGTCTAGT
66 AGACTAAATGCCTAGT
* * *
3708126 TGTGCATTTGGCAAAAAGGTGTCAATCATGCTAGTTAGATGAAACGTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3708191 AGACTTAATGCCTAGA
66 AGACTAAATGCCTAGT
* * * * * *
3708207 TGTGCATTTGGTAGAAAGGTATCAATCATGCTAGTTAGATGAAAGGTTACATACCTTTAAATAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3708272 AGATTAAATGCCTAGC
66 AGACTAAATGCCTAGT
* * * **
3708288 TGTGCATTTGGCTG-AAGAGTGCCAATCATGCTAGTTAGATGAAAGGTTAAGCACCTTTGAGTAA
1 TGTGCATTTGGCAGAAAG-GTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* *
3708352 AAGATTAAATGCCTAGA
65 AAGACTAAATGCCTAGT
* ** * * *
3708369 TGTGTATTTTACAAAAAGGTGTCAATGATGCCAGTTAGATGAAAGGTTAAATACCTTTGACTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
*
3708434 AGACTAAATGCATAGT
66 AGACTAAATGCCTAGT
* * * *
3708450 TATGCATTTGGCAGAAAGGT-TCAACTCAGGCCTGTTAGATGAAAGGTTAAATACCATTGAGTAA
1 TGTGCATTTGGCAGAAAGGTGTCAA-TCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
**
3708514 AAGACTAAATGTATAGT
65 AAGACTAAATGCCTAGT
* * *
3708531 TGTGCATTTGGCA-AAATGGTGTGAATCATGCCAGTTAGATTAAAGGTTAAATACATTTGAGTAA
1 TGTGCATTTGGCAGAAA-GGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
*
3708595 AAGACTAAATGCTTA-T
65 AAGACTAAATGCCTAGT
* * * * * *
3708611 ACGTGCATTTGGAAGAAAGGTGCCAATCATGCCAGTTATATGAAAGGTCAAATACCTTTGGGTAA
1 -TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
*
3708676 AAGACTAAATGTCTAGT
65 AAGACTAAATGCCTAGT
* *
3708693 TATGCATTTGGCAGAATGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
*
3708758 AGACTGAATG-CTAG-
66 AGACTAAATGCCTAGT
* * * *
3708772 -ATGCATTTGGTAGAAAGGTGCCAATCATGCCAGTTAGATGAAAGGTCAAATA-CTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
3708835 AGACTAAATG--TAGT
66 AGACTAAATGCCTAGT
* * * *
3708849 TGTGCATTTGGCAAAAAGGTGTCAATCATACTAGTTAGATGAAACGTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3708914 AGACTTAATGCCTATT
66 AGACTAAATGCCTAGT
* * * **
3708930 TGTGCATTTGGTAGATAGGTGTCAATCATGCTAGTTAGATGAAAGGTTAAATACCTTTGAAAAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3708995 AGATTAAATGCCTAGC
66 AGACTAAATGCCTAGT
* * * *
3709011 TGTGCATTTGGCTG-AAGAGTGTCAATCATGCTAGTTAGATGAAAGGTTAAACACCTTTGATTAA
1 TGTGCATTTGGCAGAAAG-GTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
*
3709075 AAGATTAAATGCCTAGAT
65 AAGACTAAATGCCTAG-T
* * * * * * *
3709093 T-TGTATTTTGTAAAAAGGTGTGAATGATGCCAGTTAGATGAAAGGTTAAATACCTTTGACTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3709157 AGACTAAATTCATAGT
66 AGACTAAATGCCTAGT
* * * *
3709173 TATGCATTTGGCAGAAAGGT-TCCACTCA-GGCATGTTAGATGAAAGGTTAAATACCATTGAGTA
1 TGTGCATTTGGCAGAAAGGTGT-CAATCATGCCA-GTTAGATGAAAGGTTAAATACCTTTGAGTA
*
3709236 AAAGACTAAATGCATAGT
64 AAAGACTAAATGCCTAGT
* * *
3709254 TGTGCATTTGGCA-AAATGGTGTGAATCATGCCAGTTAGATTAAAGGTTAAATACATTTGAGTAA
1 TGTGCATTTGGCAGAAA-GGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
*
3709318 AAGACTAAATGCTTA-T
65 AAGACTAAATGCCTAGT
* * * * *
3709334 ACGTGCATTTGGAAGAAAGGTGCCAATCATGCCAGTTAGATGAAAGGTCAAATACCTTTGGGTAA
1 -TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
*
3709399 AAGACTAAATGTCTAGT
65 AAGACTAAATGCCTAGT
* *
3709416 TATGCATTTGGCAGAATGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3709481 AGACTGAATGCCTAGA
66 AGACTAAATGCCTAGT
* * *
3709497 TGTGCATTTGGTAGAAAGGTGCCAATCATGCCAGTTAGATGAAAGGTCAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
*
3709562 AGACTAAATGTCTAGT
66 AGACTAAATGCCTAGT
* * * *
3709578 TGTGCATTTGGCAAAAAGGTGTCAATCATACTAGTTAGATGAAACGTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3709643 AGACTTAATGCCTATT
66 AGACTAAATGCCTAGT
* * * **
3709659 TGTGCATTTGGTAGATAGGTGTCAATCATGCTAGTTAGATGAAAGGTTAAATACCTTTGAAAAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3709724 AGATTAAATGCCTAGC
66 AGACTAAATGCCTAGT
* * * *
3709740 TGTGCATTTGGCTG-AAGAGTGTCAATCATGCTAGTTAGATGAAAGGTTAAACACCTTTGATTAA
1 TGTGCATTTGGCAGAAAG-GTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
*
3709804 AAGATTAAATGCCTAGAT
65 AAGACTAAATGCCTAG-T
* * * * * * *
3709822 T-TGTATTTTGTAAAAAGGTGTGAATGATGCCAGTTAGATGAAAGGTTAAATACCTTTGACTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3709886 AGACTAAATTCATAGT
66 AGACTAAATGCCTAGT
* * * * *
3709902 TATGCATTTGGCAGAAAGGT-TCCACTCAGGCCTGTTAGATGAAAGGTTAAATACCATTGAGTAA
1 TGTGCATTTGGCAGAAAGGTGT-CAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
*
3709966 AAGACTAAATGCATAGT
65 AAGACTAAATGCCTAGT
* * *
3709983 TGTGCATTTGGCA-AAATGGTGTGAATCATGCCAGTTAGATTAAAGGTTAAATACATTTGAGTAA
1 TGTGCATTTGGCAGAAA-GGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
*
3710047 AAGACTAAATGCTTA-T
65 AAGACTAAATGCCTAGT
* * * *
3710063 ACGTGCATTTGGCAGAAAGGT-TCCAATCATGCCAGTTAGATAAAAGGTCAAAAACCTTTGAGTA
1 -TGTGCATTTGGCAGAAAGGTGT-CAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTA
*
3710127 AAAGACTAAATGTCTAGT
64 AAAGACTAAATGCCTAGT
* * *
3710145 TGAGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTAAATAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * *
3710210 AGGCTAAATCCCTAGA
66 AGACTAAATGCCTAGT
* * * *
3710226 TATGCATTTGGCAGAAAGGTGTCAATCATGCCACTTAAATGAAAGGTAAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
*
3710291 AGACAAAATGCCTAGT
66 AGACTAAATGCCTAGT
* * * * * * * *
3710307 TGTGCTTTTGGCAAAAATGTTTCAATCATGCTAGTTTGATGAAAGGTTAAATCCCTTTAAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* **
3710372 AGACTTAATGCCTAAA
66 AGACTAAATGCCTAGT
* * ** *
3710388 TGTGCATTTGGTAGAAAGGTGGCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAACAAC
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3710453 AGATTAGATGCCTAGT
66 AGACTAAATGCCTAGT
* * *
3710469 TGTGCATTTGGCAGGAAGGTGTCAATCATGCCAGTTAGACGAAAGGTTAAACACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3710534 AGATTAAATGCCTAGA
66 AGACTAAATGCCTAGT
* * * * * ** *
3710550 TGTGTATTTTGCAAAAAGG-GTTCAATCATGCCAGCTAGATGAAATGTTAAATATATTTAAGTAA
1 TGTGCATTTGGCAGAAAGGTG-TCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
*
3710614 AAGACTAAATGCATAGT
65 AAGACTAAATGCCTAGT
* * * **
3710631 TTTGCATTTGGAAGAAAGTTACCAATCATGCCAGTTAGATGAAAGGTTAAATACC-TTGCAGTAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG-AGTAA
**
3710695 AAGACTAAATGAATAGT
65 AAGACTAAATGCCTAGT
* * *
3710712 TGTGCATATGGCAGAAAGGTG-CAAATCATGCCAGTTAGATGAAAGATTAAATACCTTTTAGTAA
1 TGTGCATTTGGCAGAAAGGTGTC-AATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
*
3710776 AAGACTAAATGTCTA-T
65 AAGACTAAATGCCTAGT
** *
3710792 CTGTGCATTTGTTAGAAAGGTGTCAATCATGCCAGTTAGATGAAAAGTTAAATACCTTTGAGTAA
1 -TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * *
3710857 AAGTCTGAATGACTAGT
65 AAGACTAAATGCCTAGT
* * * * * *
3710874 TCTGCATTTGGGAGAAAGGTGCCAATCAAGCCAGTTAGATGAAAGATTAAATAACTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
*
3710939 AGACTAAATGTCTAGT
66 AGACTAAATGCCTAGT
* * * * *
3710955 TGTGCATTTGGTAGAAATGTATCAATCATGTCGGTTAGATGAAAGGTTAAAT--CTCTTGAGTAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCT-TTGAGTAA
* *
3711018 AAGATTAAATGCCTAGC
65 AAGACTAAATGCCTAGT
* * * * * *
3711035 TAT-CATTTGGTAGAAATGTGTCAATCATGCCAGTTGGATGAAAGGTTAAATAACTTTTAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3711099 AGTCTAAATGCCTAGA
66 AGACTAAATGCCTAGT
* * * * *
3711115 AGTACATTTGGAAGAAAGGT-TCCAATCATGCCAATTAGATGAAAGGTTAAATATCC-TTCAGTA
1 TGTGCATTTGGCAGAAAGGTGT-CAATCATGCCAGTTAGATGAAAGGTTAAATA-CCTTTGAGTA
* *
3711178 AAAGAATAAATGCCTAGC
64 AAAGACTAAATGCCTAGT
* * * *
3711196 TGTGCATTTGGTAGAAATGTGTCAATCATGTCAGTTAGATGAATGGTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
3711261 AGACTAAATGCCTAGCT
66 AGACTAAATGCCTAG-T
* * * * * *
3711278 T-TGTATTTTGCAGAAAGTTGTCAATCATGTCAGTTATATGAAAGGCTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
**
3711342 AGACTAAATGAATAGT
66 AGACTAAATGCCTAGT
* *
3711358 TGTGCATTTGGGAGAAAGGTATCAATCATGCCAGTTAGATGAAAGG-TAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
*
3711422 AGA--ATATG-CTAGT
66 AGACTAAATGCCTAGT
* ** *
3711435 TGTGCATTTGGCAGAAAGGTGTGAATCATG-CAGTTAGAT-AAAGGTTAAATATTTTTGGGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
**
3711498 AGACTAAATTTCTA-T
66 AGACTAAATGCCTAGT
* * *
3711513 CTGTGCATTTGGCAGAAAGGT-TCCAATCATGCCAGTTATATGATAGGTCAAATACCTTTGAGTA
1 -TGTGCATTTGGCAGAAAGGTGT-CAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTA
* * *
3711577 AAAGA--ATAT-CATTGT
64 AAAGACTAAATGCCTAGT
* * *
3711592 T-AGCATTTGACAGAATGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
*
3711656 AGACTAAATGCCTAGA
66 AGACTAAATGCCTAGT
* *
3711672 TGTGCATTTGGAAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTCAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
*
3711737 AGACTAAAT-TCTAGT
66 AGACTAAATGCCTAGT
* * *
3711752 TGTGCATTTGGCA-AAAGGAGTCAATCATG-CAGTTAGATGAAACGTTAAATAACTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3711815 AGACTTAATGCCTAGA
66 AGACTAAATGCCTAGT
* * *
3711831 TGTGCATTTGGTAGAAAGGTGTCAATCATGCTAGTTAGATGAAAGGTTAAACACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3711896 AGATTAAATGCCTAGA
66 AGACTAAATGCCTAGT
* * * *
3711912 TGTGTATTT---AAAAAGGTGTCAATGATGCCAGTTAGATGAAAGGTTAAATACCTTTGACTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * *
3711974 TGACCAAATGCATAGT
66 AGACTAAATGCCTAGT
* * * * * *
3711990 TATGCATTTGGCAGAAAGGT-TCCACTTAGGCCTGTTAGATGAAAGGTTAAATACCATTGAGTAA
1 TGTGCATTTGGCAGAAAGGTGT-CAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
*
3712054 AAGACTAAATGCATAGT
65 AAGACTAAATGCCTAGT
* *
3712071 TGTGCATTTGGCA-AAAGGTGTGAATCATGCCAGTTAGATTAAAGGTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
3712135 AGAC--AAT---TA-T
66 AGACTAAATGCCTAGT
* * *
3712145 ACGTGCATTTGGCAGAAAGGTGCCAATCATGCCAGTTAGAT-AAAGGTTAAAAACCTTTGAGTAA
1 -TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
3712209 AAGACTAAAT-CC-AGT
65 AAGACTAAATGCCTAGT
* *
3712224 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTGAAATACCTTTAAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
3712289 AGACTAAATG-CTA-T
66 AGACTAAATGCCTAGT
* ** * *
3712303 AGTGCATTTGGCATTAAGGTGCCAATCATGCCAGTTAGATGAATGG-TAAA-ACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3712366 AAAGTAAATGCCTAGT
66 AGACTAAATGCCTAGT
* * * * *
3712382 TATGCTTTTGGCA-AAATTGTGTCAATCATGCCAGTTCGATGAAAGGTTAAAT-CCTTTAAGTAA
1 TGTGCATTTGGCAGAAA-GGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * **
3712445 AAGTCT-AATCCCTAAA
65 AAGACTAAATGCCTAGT
* *
3712461 TGTGCATTTGGTAGAAAGGTG-CAATCATGCCAGTTAGATGAAAGGTT--ATACCTTTGAGTAAC
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
3712523 AGA-TAAATGCCTAGT
66 AGACTAAATGCCTAGT
* * *
3712538 TATGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGACGAAAGGTTAAACACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3712603 AG-TTAAATGCCTAGA
66 AGACTAAATGCCTAGT
* * * * *
3712618 TGTGTATTT-GCAAAAAGGTGTCAATCATGCCAGCTAGATGAAATGTTAATATA--TTTAAGT-A
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAA-ATACCTTTGAGTAA
*
3712679 AAGACTAAATGCATAGT
65 AAGACTAAATGCCTAGT
* ** *
3712696 T-TGCATTTGGAAGAAAGGTACCAATCATGCCAGTTAGATGAAAGGTTAAACACC-TTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
*
3712759 AGACTAAATGCATAGT
66 AGACTAAATGCCTAGT
* * *
3712775 TGTACATTTGGCAGAAAGGTG-CAATCATGTCAGTTAGATGAAAGGTTAAATTCCTTT-AGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
*
3712838 ACACTAAATG-CTA-T
66 AGACTAAATGCCTAGT
** * *
3712852 TGTGCATTTGTTAGAAA-GTTTCAATCATGCCAGTTAGATGAAA-GTTAAATACCATTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
*
3712915 AGACT-AATGCCTAGC
66 AGACTAAATGCCTAGT
* * *
3712930 TGTGCATTTGG-AAAAAGGTGTCAATCATG-CAGTTAGTTGACAGGTTAAATACCTTTGAGT-AA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * *
3712992 A-ACTGAATGACTAGC
66 AGACTAAATGCCTAGT
* * ** * *
3713007 TGTGCATTTGGCAGAAAGGTGCCAATCAAGCCAGTTAGATGAAAGGTTAAATAAATTTGACTTAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
*
3713072 AGACTAAATGTCTAG-
66 AGACTAAATGCCTAGT
* *
3713087 TGTGCATTTGGTAG-AA--TGTCAATCATGTCAGTTAGATGAAAGGTTAAATACC-TTGAGT--A
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3713146 A-ATTAAATG-CTAGC
66 AGACTAAATGCCTAGT
* * * * *
3713160 TGTGCATTTGGTAGAAATGTTTCAATAATGCCAGTTGGATGAAAGGTTAAATA-CTTT-AGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
3713223 AGACTAAATGCCTAG-
66 AGACTAAATGCCTAGT
* * * *
3713238 TGTACATTTGGAAGAAAGCTTTCAATCATGCCA-TTAGATGAAAGGTTAAATA-CTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
*
3713301 AGAATAAATGCCTAGT
66 AGACTAAATGCCTAGT
* * * * *
3713317 TGTGCATTTGGTATAAATGTGTCAATCATGTCAGTTAGATGAATGGTTAAATA-CTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3713381 AGACTAAATACCTAGC
66 AGACTAAATGCCTAGT
3713397 TGT--ATTTGG-AGAAAG
1 TGTGCATTTGGCAGAAAG
3713412 CCATTTATGA
Statistics
Matches: 10514, Mismatches: 1546, Indels: 648
0.83 0.12 0.05
Matches are distributed among these distances:
72 29 0.00
73 37 0.00
74 66 0.01
75 174 0.02
76 291 0.03
77 683 0.06
78 947 0.09
79 1118 0.11
80 1163 0.11
81 5917 0.56
82 88 0.01
83 1 0.00
ACGTcount: A:0.36, C:0.13, G:0.22, T:0.30
Consensus pattern (81 bp):
TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
AGACTAAATGCCTAGT
Found at i:3701226 original size:162 final size:161
Alignment explanation
Indices: 3700950--3716939 Score: 17420
Period size: 162 Copynumber: 100.5 Consensus size: 161
3700940 ATGCCAGTTC
* *
3700950 TGTGCATTTGGCAG-AAGGTG-CAAATCATGCCAGTTATATGAAAAAGGTTAAATACCTTTGGGT
1 TGTGCATTTGGCAGAAAGGTGTC-AATCATGCCAGTTAGATG--AAAGGTTAAATACCTTTGAGT
* * * *
3701013 -AAA-ACTAAATGCATA-TT-TGTATTTGGAAGAAATGTGTCAATCATGCCAGTTATATGAAAGG
63 AAAAGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGG
* *** *
3701074 CTAAATATAATTGAGTAAAAGACTAAATGCATAGT
127 TTAAATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * *
3701109 TGTGCATTTGGAAGAAAGGTTTCAATCATGCCAGTTAGATTAAAGGTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * *
3701174 AGACTAAATGCATAGTTGTGCATTTGGAAGAAAGGTACAAATCATGCCAGTTAGATTAAAGGTTA
66 AGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGTTC-AATCATGCCAGTTAGATGAAAGGTTA
* *
3701239 AATACCATTT-AGTAAAAGACTAACTGACTA-T
130 AATACC-TTTGAGTAAAAGACTAAATGCCTAGT
* *
3701270 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTTAATACCCTTGAGTAA
1 -TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * * * *
3701335 AAGTCTAAATGACTAGTTGTGCA-TTCGACATAAAGGTGTCAACCATGCCAGTTAGATGAAAGGT
65 AAGACTAAATGCCTAGTTGTGCATTTGGA-AGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGT
* *
3701399 TAAATACCTTTGAGTAAAAGACTAAATGTCTAGC
128 TAAATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * * * * * *
3701433 TGTGCATTTGGTAGAAAGGTGCCAATCATGCTAGTTATATGAAAGGTTAACTACCATTT-TGTAG
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACC-TTTGAGTAA
* * * *
3701497 AAGACTAATTGACTAGTTGTGCATTTGGGAA-AAAGGTGACAATCATGCCAGTTAGATAAAAGGT
65 AAGACTAAATGCCTAGTTGTGCATTT-GGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGT
* * * *
3701561 TAAATAACTTTGAGTAGAAGAC-AAATGCGTAGA
128 TAAATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * * * *
3701594 TGTTCATTTGGTAGAAAGGT-TCCAATCATGCCAGTTAGATGAAAGGTTAAAAATCTTTGACTAA
1 TGTGCATTTGGCAGAAAGGTGT-CAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * ** * * * *
3701658 AAGATTAAGTGCCTAGCAGTGCATTTGGTAGAAATGTGTCAATCACGCCAGTTAGATGAAAAGTT
65 AAGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTT
*
3701723 AAATACCTTTGAGTAAAAGACTAAATGCCTAGC
129 AAATACCTTTGAGTAAAAGACTAAATGCCTAGT
** * * * * * * *
3701756 TACGTATTTTGCAGAAAGTTGTCAATCATGCCAGTTATATGAAAGGCTAAATATCTTTAAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * * * *
3701821 AGACTAAATGCATACTTCTGCATTTGGGAGAAAGGTGCAATCATGCCAGTTAGATGAAAGGTTAA
66 AGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGTTCAATCATGCCAGTTAGATGAAAGGTTAA
* *
3701886 ATACCTTTGAGTAAAAGAATAAATGCATAGT
131 ATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * * *
3701917 TGTGCATTTGGCAGAAAGGTGTGAATCATGCCAGTTAGATTAAAGGTTAAATA-TTTATGGGTAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTT-TGAGTAA
*** * *
3701981 AAGACTAAATGCCTA-TCTGTGCATTTTCCAGAAAGGTGCCAATCATGTCAGTTAGATGAAAGGT
65 AAGACTAAATGCCTAGT-TGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGT
* * * *
3702045 CAAGTACCTTTGGGTAAAAGACTAAATGTCTAGT
128 TAAATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * *
3702079 TATGCATTTGGCAGAATGGTGTCAATCATGCTAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * * * * *
3702144 AGACTGAATGCCTAGATGTGCATTTGGTAGAAAGGTACCATCATGCCAGTTAGATGAAAGGTCAA
66 AGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGTTCAATCATGCCAGTTAGATGAAAGGTTAA
*
3702209 ATACCTTTGAGTAAAAGACTAAATGTCTAGT
131 ATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * * * * *
3702240 TGTACATTTGGCAAAAAAGTGTCAATCATACAAGTTAGATGAAACGTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * * *
3702305 AGACTTAATGCCTAGATGTGCATTTGGTAGAAAGGTGTCAATCATGCTAGTTAGATGAAAGGTTA
66 AGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTA
* * *
3702370 AATACCTTTGAATAAAAGATTAAATGCCTAGC
130 AATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * *
3702402 TGTGCATTTTG-ATG-AAGAGTGTCAATCATGCTAGTTAGATGAAAGGTTAAACACCTTTGAGTA
1 TGTGCATTTGGCA-GAAAG-GTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTA
* * * * * *
3702465 AAAGAAT-AATGCCTAGATGTGTATTTTGCAA-AAATG-TCAATGATGCCAGTTAGATGAAAGGT
64 AAAGACTAAATGCCTAGTTGTGCA-TTTGGAAGAAAGGTTCAATCATGCCAGTTAGATGAAAGGT
* * * *
3702527 TAAATACCTTTAACTAAAATACTAAATGCATAGT
128 TAAATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * * * * *
3702561 TATGCATTTGGCAGAAAGGT-TCCACTCAGGCCTGTTAGATGAAAGGTTAAATACCATTGAGTTA
1 TGTGCATTTGGCAGAAAGGTGT-CAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * *
3702625 AAGACTAAATGCATAGTTGTGCATTTGGAA-AAATGGTGTGAATCATGCCAGTTAGATTAAAGGT
65 AAGACTAAATGCCTAGTTGTGCATTTGGAAGAAA-GGT-TCAATCATGCCAGTTAGATGAAAGGT
* *
3702689 TAAATACATTTGAGTAAAAGACTAAATGCTTA-T
128 TAAATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * * * * *
3702722 ACGCGCATTTGGCATAAAGGTGCCAATCATGCCAGTTAGATGAAAGGTCAAATACCTTTGGGTAA
1 -TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * * *
3702787 AAGACTAAATGTCTAGTT-AGCATTTGGCAGAATGGTGTCAATCATGCCAGTTAGATGAAAGGTT
65 AAGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTT
* *
3702851 AAATACCTTTGAGTAAAAGACTGAATGCCTAGA
129 AAATACCTTTGAGTAAAAGACTAAATGCCTAGT
* ** *
3702884 TGTGCATTTGGTAGAAAGGTACCAATCATGCCAGTTAGATGAAAGGTCAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * * * * *
3702949 AGACTAAATGTCTAGTTGTACATTTGGCAA-AAAAGTGTCAATCATACAAGTTAGATGAAACGTT
66 AGACTAAATGCCTAGTTGTGCATTTGG-AAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTT
* *
3703013 AAATACCTTTGAGTAAAAGACTTAATGCCTAGA
129 AAATACCTTTGAGTAAAAGACTAAATGCCTAGT
* *
3703046 TGTGCATTTGGTAGAAAGGTGTCAATCATGCTAGTTAGATGAAA-GTTAAATACCTTTGA--AAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * * * *
3703108 AGATTAAATGCCTAGCTGTGCATTTTGATG-AAGAGTGTCAATCATGCTAGTTAGATGAAAGGTT
66 AGACTAAATGCCTAGTTGTGCATTTGGAAGAAAG-GT-TCAATCATGCCAGTTAGATGAAAGGTT
* * *
3703172 AAACACCTTTGAGTAAAAGAATAAATGCCTAGA
129 AAATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * * * *
3703205 TGTGTATTTTGCAAAAAGGTGTCAATGATGCCAGTTAGATGAAAGGTTAAATACCTTTGACT---
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * * * *
3703267 A-ACTAAATGCATAGTTATGCATTTGGCAG-AAGGTTCCACTCA-GCCTGTTAGATGAAAGGTTA
66 AGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGTT-CAATCATGCCAGTTAGATGAAAGGTTA
* * *
3703329 AATACCATTGAGTTAAAGACTAAATGCATAGT
130 AATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * *
3703361 TGTGCATTTGGCA-AAATGGTGTGAATCATGCCAGTTAGATTAAAGGTTAAATACATTTGAGTAA
1 TGTGCATTTGGCAGAAA-GGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * * * *
3703425 AAGACTAAATGCTTA-TACGCGCATTTGGCAGAAAGGTGCCAATCATGCCAGTTAGATGAAAGGT
65 AAGACTAAATGCCTAGT-TGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGT
* * * *
3703489 CAAATACCTTTGGGTTAAAGACTAAATGTCTAGT
128 TAAATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * *
3703523 TATGCATTTGGCAGAATGGTATCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGT-AA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * * * *
3703587 A-ACTGAATGCCTAGATGTGCATTTGGTAGAAAGGTACCAATCATGCCAGTTAGATGAAAGGTCA
66 AGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTA
* *
3703651 AATATCTTTGAGTAAAAGACTAAATGTCTAGT
130 AATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * * * *
3703683 TGTGCATTTGGCAAAAAAGTGTCAATCATACAAGTTAGATGAAACGTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * * *
3703748 AGACTTAATGCCTAGATGTGCATTTGGTAGAAAGGTGTCAATCATGCTAGTTAGATGAAAGGTTA
66 AGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTA
* * *
3703813 AATACCTTTGAATAAAAGATTAAATGCCTAGC
130 AATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * * *
3703845 TGTGCATTTTG-ATG-GAGAGTGTCAATCATGCTAGTTAGATGAAAGGTTAAACACCTTTGAGTA
1 TGTGCATTTGGCA-GAAAG-GTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTA
* * * * * * * *
3703908 AAAGAATAAATGCCTAGATGTGTATTTTG--CAAATG-TCAATGATGCCAATTAGATGAAAGGTT
64 AAAGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGTTCAATCATGCCAGTTAGATGAAAGGTT
* *
3703970 AAATACCTTTGACTAAAATACTAAATG-CT--T
129 AAATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * * * * *
3704000 TATGCATTTGGCAGAAAGGT-TCCACTCAGGCCTGTT--ATGAAAGGTTAAATACCATTGAGTTA
1 TGTGCATTTGGCAGAAAGGTGT-CAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * * * *
3704062 AAGACTAAATGCATAGTTGTGCATTTGGCAA-AATGCTGTGAATCATGCCAGTTAGATTAAAGGT
65 AAGACTAAATGCCTAGTTGTGCATTTGG-AAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGT
* *
3704126 TAAATACATTTGAGTAAAAGACTAAATGCTTA-T
128 TAAATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * * * *
3704159 ACGCGCATTTGGCAGAAAGGTGCCAATCATGCCAGTTAGATGAAAGGTCAAATACCTTTGGGTAA
1 -TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * * * *
3704224 AAGACTAAATGTCTAGTTATGCATTTGGCAGAATGGTGTCAATCATGCTAGTTAGATGAAAGGTT
65 AAGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTT
* *
3704289 AAATACCTTTGAGTAAAAGACTGAATGCCTAGA
129 AAATACCTTTGAGTAAAAGACTAAATGCCTAGT
* ** * * *
3704322 TGTGCATTTGGTAGAAAGGTACCAATCATGCCAGTTAGATGAAAGGTCAAGTACCTTTGGGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * * *
3704387 AGACTAAATGTCTAG-TGATGCATTTGGCAGAATGGTGTCAATCATGCTAGTTAGATGAAAGGTT
66 AGACTAAATGCCTAGTTG-TGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTT
* *
3704451 AAATACCTTTGAGTAAAAGACTGAATGCCTAGA
129 AAATACCTTTGAGTAAAAGACTAAATGCCTAGT
* ** *
3704484 TGTGCATTTGGTAGAAAGGTACCAATCATGCCAGTTAGATGAAAGGTCAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * * * * *
3704549 AGACTAAATGTCTAGTTGTACATTTGGCAA-AAAAGTGTCAATCATACAAGTTAGATGAAACGTT
66 AGACTAAATGCCTAGTTGTGCATTTGG-AAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTT
* *
3704613 AAATACCTTTGAGTAAAAGACTTAATGCCTAGA
129 AAATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * *
3704646 TGTGCATTTGGTAGAAAGGTGTCAATCATGCTAGTTAGATGAAAGGTTAAATACCTTTGAATAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * * * *
3704711 AGATTAAATGCCTAGCTGTGCATTTTGATG-AAGAGTGTCAATCATGCTAGTTAGATGAAAGGTT
66 AGACTAAATGCCTAGTTGTGCATTTGGAAGAAAG-GT-TCAATCATGCCAGTTAGATGAAAGGTT
* * *
3704775 AAACACCTTTGAGTAAAAGAATAAATGCCTAGA
129 AAATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * * * * *
3704808 TGTGTATTTTGCAAAAATGG-GTC-ATGATGCCAGTTAGATGAAAGGTT-AA-ACCTTTAACTAA
1 TGTGCATTTGGCAGAAA-GGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * * * * *
3704869 AATACTAAATGCATAGTTATGCATTTGGCA-AAAGGTTCCA-CA-GCCTGTT--ATGAAAGGTTA
65 AAGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGTTCAATCATGCCAGTTAGATGAAAGGTTA
* * *
3704929 AATACCATTGAGTTAAAGACTAAATGCATAGT
130 AATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * *
3704961 TGTGCATTTGGCA-AAATGGTGTGAATCATGCCAGTTAGATTAAAGGTTAAATACATTTGAGTAA
1 TGTGCATTTGGCAGAAA-GGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * * * * *
3705025 AAGACTAAATGCTTA-TACGCGCATTTGGCATAAAGGTGCCAATCATGCCAGTTAGATGAAAGG-
65 AAGACTAAATGCCTAGT-TGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGT
* * *
3705088 TCAATACCTTTGGGT-AAAGACTAAA-GTCTAGT
128 TAAATACCTTTGAGTAAAAGACTAAATGCCTAGT
* *
3705120 TATGCATTTGGCAGAATGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * * * *
3705185 AGACTGAATGCCTAGATGTGCATTTGGTAGAAAGGTACCAATCATGCCAGTTAGATGAAAGGTCA
66 AGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTA
*
3705250 AATACCTTTGAGTAAAAGACTAAATGTCTAGT
130 AATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * * *
3705282 TGTACATTTGGCA-AAAAGTGTCAATCAT-ACAGTTAGATGAAACGTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * * *
3705345 AGACTTAATGCCTAGATGTGCATTTGGTAGAAAGGTGTCAATCATGCTAGTTAGATGAAAGGTTA
66 AGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTA
* * *
3705410 AATACCTTTGAATAAAAGATTAAATGCCTAGC
130 AATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * *
3705442 TGTGCATTT-G--G-AAGGTCTCAATCATGCTAGTTAGATGAAAGGTTAAACACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * * * * *
3705503 AGAATAAATGCCTAGATGTGTATTTGCAA-AAAGGTGTCAATGATCCCAG-TAGATGAAAGGTTA
66 AGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTA
* * *
3705566 AATACCTTTGACTAAAATACTAAATGCATAGT
130 AATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * * * * *
3705598 TATGCATTTGGCAGAAAGGT-TCCACTCAGGCCTGTTAGATGAAAGGTTAAATACCATTGAGTTA
1 TGTGCATTTGGCAGAAAGGTGT-CAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * * *
3705662 AAGACTAAATGCATAGTTGTGCATTTGGCAA-AATGGTGTGAATCATGCCAGTTAGATTAAAGGT
65 AAGACTAAATGCCTAGTTGTGCATTTGG-AAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGT
* *
3705726 TAAATACATTTGAGTAAAAGACTAAATGCTTA-T
128 TAAATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * * *
3705759 CGCGCATTTGGCAGAAAGGTGCCAATCATGCCAGTTAGATGAAAGGTCAAATACCTTTG-GTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * * *
3705823 AGACTAAATGTCTAGTTATGCATTTGGCAGAATGGTGTCAATCATGCCAGTTAGATGAAAGGTTA
66 AGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTA
* *
3705888 AATACCTTTGAGTAAAAGACT-GATG-CTAGA
130 AATACCTTTGAGTAAAAGACTAAATGCCTAGT
* ** * *
3705918 TGTGCATTTGGTAGAAAGGTACCAATCAT----GTTAGATGAAAGGTCAAATATC-TTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * * * *
3705978 AGACTAAATGTCTAGTTGTGCATTTGGCAA-AAAAGTGTCAATCATACAAGTTAGATGAAACGTT
66 AGACTAAATGCCTAGTTGTGCATTTGG-AAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTT
* *
3706042 AAATACCTTTGAGTAAAAGACTTAATGCCTAGA
129 AAATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * *
3706075 TGTGCATTTGGTAGAAAGGTGTCAATCATGCTAGTTAGATGAAAGGTTAAATACCTTTGAATAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * * * *
3706140 AGATTAAATGCCTAGCTGTGCATTT-GATG-GAGAGTGTCAATCATGCTAGTTAGATG-AAGGTT
66 AGACTAAATGCCTAGTTGTGCATTTGGAAGAAAG-GT-TCAATCATGCCAGTTAGATGAAAGGTT
* *
3706202 -AACACCTTTGAGTAAAAGA-TAAATGCCTAGA
129 AAATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * * * *
3706233 TGTGTATTTTGCA-AAAGGTGTCAATGATGCCAATTAGATG-AAGGTTAAATACCTTTGACTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * * * * *
3706296 ATACT-AATGCATAGTTATGCATTTGGCAGAAAGGTTCCACTCA-GCCTGTTAGATG--AGGTTA
66 AGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGTT-CAATCATGCCAGTTAGATGAAAGGTTA
* * *
3706357 AATACCATTGAGTTAAAGACTAAATGCATAGT
130 AATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * * *
3706389 TGTGCATTTGGCA-AAATGCTGTGAATCATGCCAGTTAGATTAAAGGTTAAATACATTTGAGTAA
1 TGTGCATTTGGCAGAAA-GGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * * * *
3706453 AAGACTAAATGCTTA-TACGCGCATTTGGCAGAAAGGTGCCAATCATGCCAGTTAGATGAAAGGT
65 AAGACTAAATGCCTAGT-TGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGT
* *
3706517 CAAATACCTTTG-GTAAAAGACTAAATGTCTAGT
128 TAAATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * *
3706550 TATGCATTTGGCAGAATGGTGTCAATCATGCTAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * * *
3706615 AGACTGAATGCCTAGATGTGCATTT----GAAAGGTACCAATCATGCCAGTTAGATGAAAGGTCA
66 AGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTA
*
3706676 AATACCTTTGAGTAAAAGACTAAATGTCTAGT
130 AATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * * *
3706708 TGTACATTT-GCA-AAAAGTGTCAATCAT-ACAGTT--ATGAAACGTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * * *
3706768 AGACTTAATGCCTAGATGTGCATTTGGTAGAAAGGTGTCAATCATGCTAGTTAGATGAAAGGTTA
66 AGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTA
* * *
3706833 AATACCTTTGAATAAAAGA-TTAATGCCTAGC
130 AATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * * *
3706864 TGTGCATTTTG-ATG-AAGATGTCAATCATGCTAGTTAGATGAAAGGTTAAACACCTTTGAGTAA
1 TGTGCATTTGGCA-GAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * * * * *
3706927 AAGAATAAATGCCTAGATGTGTATTTTGCA-AAA-GTGTCAATGATGCCAGTTAGATGAAAGGTT
65 AAGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTT
* * *
3706990 AAATACCTTTGACTAAAATACTAAATGCATAGT
129 AAATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * * * * *
3707023 TATGCATTTGGCAGAAAGGT-TCCACTCA-GCCTGTTAGATGAAAGGTTAAATACCATTAAGTTA
1 TGTGCATTTGGCAGAAAGGTGT-CAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * * *
3707086 AAGACT-AATGCATAGTT-TGCATTTGGCAA-AATGGTGTGAATCATGCCAGTTAGATTAAAGGT
65 AAGACTAAATGCCTAGTTGTGCATTTGG-AAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGT
* *
3707148 TAAATACATTTGAGTAAAAGACTAAATGCTTA-T
128 TAAATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * * *
3707181 ACGCGCATTTGGCAGAAAGGTGCCAATCATGCCAGTTAGATGAAAGG-TCAA-A----T-AGTAA
1 -TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * * *
3707239 AAGACTAAATGTCTAGTTGTGCATTTGGCA-AAA-GTGTCAATCATGCTAGTTAGATGAAACGTT
65 AAGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTT
* *
3707302 AAATACC-TTGAGT-AAAGACTTAATGCCTAGA
129 AAATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * * ** *
3707333 TGTGCA-TTGGTAGAAAATGTGTCAATCATGCTAGTTAGATGAAAGGTT-AATACCTTTTTGTAG
1 TGTGCATTTGGCAG-AAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * * * *
3707396 AAGACTAATTGACTAGTTGTGCATTTAGAA-AAAGGTGCCAATCATGCCAGTTAGATAAAAGGTT
65 AAGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTT
* * * *
3707460 AAATA-CTTTGAGTAGAAGACTAAAGGCGTAGA
129 AAATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * * *
3707492 TGTTCATTTGGTAGAAAGGT-TCAATCATG-CAGTTAAATG-AAGGTTAAATATCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * ** * * * * *
3707554 AGATTAAGTGCCTAGCAGTGCATTTGGTAGAAATGTGTCAATCACGCCAGTTAGATGAAAAGTGA
66 AGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTA
* *
3707619 AATACCTTTGAGTAAAAGACTAAATTCCTAGC
130 AATACCTTTGAGTAAAAGACTAAATGCCTAGT
** * * * * * * *
3707651 TACGTATTTTGTAGAAAGTTGTCAATCATGCCAGTTATATGAAAGGCTT-AATATCTTTAAGTAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGG-TTAAATACCTTTGAGTAA
* * * * *
3707715 AAGACTAAA-GCATA--T-CGCA-TTGGGAGAAAGGTGCCAAACATGCCAGTTAGATG-AAGGTT
65 AAGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTT
*
3707774 AAATACCTTTGAGTAAAAGAAT-AATG-CTAGT
129 AAATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * **
3707805 TGTGCATTTGGCAGAAAGGGGTGAATCATGCCAGTTAGAT-AAAGGTTAAATA--TTTCTGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * * * * *
3707867 AGACTAAATACCTA-TCTGTGCATTTGGCATAAATGTGCCAATCATGCCAGTTAGATGAAAGGTC
66 AGACTAAATGCCTAGT-TGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTT
* *
3707931 AAATACCTTT-AGGTAAAATACTAAATGTCTAGT
129 AAATACCTTTGA-GTAAAAGACTAAATGCCTAGT
* * *
3707964 TATGCATTTGGCAGAATGGTGTCAATCATGCCAGTTAGATGAACGGTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * * * *
3708029 AGACTGAATGCCTAGATGTGCATTTGGTAGAAAGGTGCCAATCATGCCAGTTAGATGAAAGGTCA
66 AGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTA
*
3708094 AATACCTTTGAGTAAAAGACTAAATGTCTAGT
130 AATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * *
3708126 TGTGCATTTGGCAAAAAGGTGTCAATCATGCTAGTTAGATGAAACGTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * * *
3708191 AGACTTAATGCCTAGATGTGCATTTGGTAGAAAGGTATCAATCATGCTAGTTAGATGAAAGGTTA
66 AGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTA
* * * * *
3708256 CATACCTTTAAATAAAAGATTAAATGCCTAGC
130 AATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * * **
3708288 TGTGCATTTGGCTG-AAGAGTGCCAATCATGCTAGTTAGATGAAAGGTTAAGCACCTTTGAGTAA
1 TGTGCATTTGGCAGAAAG-GTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * * * * *
3708352 AAGATTAAATGCCTAGATGTGTATTT-TACAAAAAGGTGTCAATGATGCCAGTTAGATGAAAGGT
65 AAGACTAAATGCCTAGTTGTGCATTTGGA-AGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGT
* *
3708416 TAAATACCTTTGACTAAAAGACTAAATGCATAGT
128 TAAATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * * *
3708450 TATGCATTTGGCAGAAAGGT-TCAACTCAGGCCTGTTAGATGAAAGGTTAAATACCATTGAGTAA
1 TGTGCATTTGGCAGAAAGGTGTCAA-TCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
** * * *
3708514 AAGACTAAATGTATAGTTGTGCATTTGGCAA-AATGGTGTGAATCATGCCAGTTAGATTAAAGGT
65 AAGACTAAATGCCTAGTTGTGCATTTGG-AAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGT
* *
3708578 TAAATACATTTGAGTAAAAGACTAAATGCTTA-T
128 TAAATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * * * * *
3708611 ACGTGCATTTGGAAGAAAGGTGCCAATCATGCCAGTTATATGAAAGGTCAAATACCTTTGGGTAA
1 -TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * * *
3708676 AAGACTAAATGTCTAGTTATGCATTTGGCAGAATGGTGTCAATCATGCCAGTTAGATGAAAGGTT
65 AAGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTT
*
3708741 AAATACCTTTGAGTAAAAGACTGAATG-CTAG-
129 AAATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * * *
3708772 -ATGCATTTGGTAGAAAGGTGCCAATCATGCCAGTTAGATGAAAGGTCAAATA-CTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * *
3708835 AGACTAAATG--TAGTTGTGCATTTGGCAA-AAAGGTGTCAATCATACTAGTTAGATGAAACGTT
66 AGACTAAATGCCTAGTTGTGCATTTGG-AAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTT
* *
3708897 AAATACCTTTGAGTAAAAGACTTAATGCCTATT
129 AAATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * * **
3708930 TGTGCATTTGGTAGATAGGTGTCAATCATGCTAGTTAGATGAAAGGTTAAATACCTTTGAAAAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * ** *
3708995 AGATTAAATGCCTAGCTGTGCATTTGGCTG-AAGAGTGTCAATCATGCTAGTTAGATGAAAGGTT
66 AGACTAAATGCCTAGTTGTGCATTTGGAAGAAAG-GT-TCAATCATGCCAGTTAGATGAAAGGTT
* * *
3709059 AAACACCTTTGATTAAAAGATTAAATGCCTAGAT
129 AAATACCTTTGAGTAAAAGACTAAATGCCTAG-T
* * * * * * *
3709093 T-TGTATTTTGTAAAAAGGTGTGAATGATGCCAGTTAGATGAAAGGTTAAATACCTTTGACTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * * * * *
3709157 AGACTAAATTCATAGTTATGCATTTGGCAGAAAGGTTCCACTCA-GGCATGTTAGATGAAAGGTT
66 AGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGTT-CAATCATGCCA-GTTAGATGAAAGGTT
* *
3709221 AAATACCATTGAGTAAAAGACTAAATGCATAGT
129 AAATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * *
3709254 TGTGCATTTGGCA-AAATGGTGTGAATCATGCCAGTTAGATTAAAGGTTAAATACATTTGAGTAA
1 TGTGCATTTGGCAGAAA-GGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * *
3709318 AAGACTAAATGCTTA-TACGTGCATTTGGAAGAAAGGTGCCAATCATGCCAGTTAGATGAAAGGT
65 AAGACTAAATGCCTAGT-TGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGT
* * *
3709382 CAAATACCTTTGGGTAAAAGACTAAATGTCTAGT
128 TAAATACCTTTGAGTAAAAGACTAAATGCCTAGT
* *
3709416 TATGCATTTGGCAGAATGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * * * *
3709481 AGACTGAATGCCTAGATGTGCATTTGGTAGAAAGGTGCCAATCATGCCAGTTAGATGAAAGGTCA
66 AGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTA
*
3709546 AATACCTTTGAGTAAAAGACTAAATGTCTAGT
130 AATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * * *
3709578 TGTGCATTTGGCAAAAAGGTGTCAATCATACTAGTTAGATGAAACGTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * * * *
3709643 AGACTTAATGCCTATTTGTGCATTTGGTAGATAGGTGTCAATCATGCTAGTTAGATGAAAGGTTA
66 AGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTA
** * *
3709708 AATACCTTTGAAAAAAAGATTAAATGCCTAGC
130 AATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * * *
3709740 TGTGCATTTGGCTG-AAGAGTGTCAATCATGCTAGTTAGATGAAAGGTTAAACACCTTTGATTAA
1 TGTGCATTTGGCAGAAAG-GTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * * * *
3709804 AAGATTAAATGCCTAGATT-TGTATTTTGTAA-AAAGGTGTGAATGATGCCAGTTAGATGAAAGG
65 AAGACTAAATGCCTAG-TTGTGCA-TTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGG
* * *
3709867 TTAAATACCTTTGACTAAAAGACTAAATTCATAGT
127 TTAAATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * * * *
3709902 TATGCATTTGGCAGAAAGGT-TCCACTCAGGCCTGTTAGATGAAAGGTTAAATACCATTGAGTAA
1 TGTGCATTTGGCAGAAAGGTGT-CAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * * *
3709966 AAGACTAAATGCATAGTTGTGCATTTGGCAA-AATGGTGTGAATCATGCCAGTTAGATTAAAGGT
65 AAGACTAAATGCCTAGTTGTGCATTTGG-AAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGT
* *
3710030 TAAATACATTTGAGTAAAAGACTAAATGCTTA-T
128 TAAATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * * *
3710063 ACGTGCATTTGGCAGAAAGGT-TCCAATCATGCCAGTTAGATAAAAGGTCAAAAACCTTTGAGTA
1 -TGTGCATTTGGCAGAAAGGTGT-CAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTA
* * *
3710127 AAAGACTAAATGTCTAGTTGAGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGT
64 AAAGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGT
* * * * *
3710192 TAAATACCTTTAAATAAAAGGCTAAATCCCTAGA
128 TAAATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * * *
3710226 TATGCATTTGGCAGAAAGGTGTCAATCATGCCACTTAAATGAAAGGTAAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * * * *
3710291 AGACAAAATGCCTAGTTGTGCTTTTGGCAA-AAATGTTTCAATCATGCTAGTTTGATGAAAGGTT
66 AGACTAAATGCCTAGTTGTGCATTTGG-AAGAAA-GGTTCAATCATGCCAGTTAGATGAAAGGTT
* * * **
3710355 AAATCCCTTTAAGTAAAAGACTTAATGCCTAAA
129 AAATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * ** *
3710388 TGTGCATTTGGTAGAAAGGTGGCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAACAAC
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * * * *
3710453 AGATTAGATGCCTAGTTGTGCATTTGGCAGGAAGGTGTCAATCATGCCAGTTAGACGAAAGGTTA
66 AGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTA
* * *
3710518 AACACCTTTGAGTAAAAGATTAAATGCCTAGA
130 AATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * * * * ** *
3710550 TGTGTATTTTGCAAAAAGG-GTTCAATCATGCCAGCTAGATGAAATGTTAAATATATTTAAGTAA
1 TGTGCATTTGGCAGAAAGGTG-TCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* *
3710614 AAGACTAAATGCATAGTTTTGCATTTGGAAGAAA-GTTACCAATCATGCCAGTTAGATGAAAGGT
65 AAGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGTT--CAATCATGCCAGTTAGATGAAAGGT
**
3710678 TAAATACC-TTGCAGTAAAAGACTAAATGAATAGT
128 TAAATACCTTTG-AGTAAAAGACTAAATGCCTAGT
* * *
3710712 TGTGCATATGGCAGAAAGGTG-CAAATCATGCCAGTTAGATGAAAGATTAAATACCTTTTAGTAA
1 TGTGCATTTGGCAGAAAGGTGTC-AATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* ** *
3710776 AAGACTAAATGTCTA-TCTGTGCATTTGTTAGAAAGGTGTCAATCATGCCAGTTAGATGAAAAGT
65 AAGACTAAATGCCTAGT-TGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGT
* * *
3710840 TAAATACCTTTGAGTAAAAGTCTGAATGACTAGT
128 TAAATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * * * * *
3710874 TCTGCATTTGGGAGAAAGGTGCCAATCAAGCCAGTTAGATGAAAGATTAAATAACTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * * * *
3710939 AGACTAAATGTCTAGTTGTGCATTTGGTAGAAATGTATCAATCATGTCGGTTAGATGAAAGGTTA
66 AGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTA
* *
3711004 AAT--CTCTTGAGTAAAAGATTAAATGCCTAGC
130 AATACCT-TTGAGTAAAAGACTAAATGCCTAGT
* * * * * *
3711035 TAT-CATTTGGTAGAAATGTGTCAATCATGCCAGTTGGATGAAAGGTTAAATAACTTTTAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* ** * *
3711099 AGTCTAAATGCCTAGAAGTACATTTGGAAGAAAGGTTCCAATCATGCCAATTAGATGAAAGGTTA
66 AGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGTT-CAATCATGCCAGTTAGATGAAAGGTTA
* * *
3711164 AATATCC-TTCAGTAAAAGAATAAATGCCTAGC
130 AATA-CCTTTGAGTAAAAGACTAAATGCCTAGT
* * * *
3711196 TGTGCATTTGGTAGAAATGTGTCAATCATGTCAGTTAGATGAATGGTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * * * * * *
3711261 AGACTAAATGCCTAGCTT-TGTATTTTGCAGAAAGTTGTCAATCATGTCAGTTATATGAAAGGCT
66 AGACTAAATGCCTAG-TTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTT
**
3711325 AAATACCTTTGAGTAAAAGACTAAATGAATAGT
129 AAATACCTTTGAGTAAAAGACTAAATGCCTAGT
* *
3711358 TGTGCATTTGGGAGAAAGGTATCAATCATGCCAGTTAGATGAAAGG-TAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * *
3711422 AGA--ATATG-CTAGTTGTGCATTTGGCAGAAAGGTGTGAATCATG-CAGTTAGAT-AAAGGTTA
66 AGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTA
** * **
3711482 AATATTTTTGGGTAAAAGACTAAATTTCTA-T
130 AATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * *
3711513 CTGTGCATTTGGCAGAAAGGT-TCCAATCATGCCAGTTATATGATAGGTCAAATACCTTTGAGTA
1 -TGTGCATTTGGCAGAAAGGTGT-CAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTA
* * * * *
3711577 AAAGA--ATAT-CATTGTT-AGCATTT-GACAGAATGGTGTCAATCATGCCAGTTAGATGAAAGG
64 AAAGACTAAATGCCTAGTTGTGCATTTGGA-AGAAAGGT-TCAATCATGCCAGTTAGATGAAAGG
*
3711637 TTAAATACCTTTGAGTAAAAGACTAAATGCCTAGA
127 TTAAATACCTTTGAGTAAAAGACTAAATGCCTAGT
* *
3711672 TGTGCATTTGGAAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTCAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * * *
3711737 AGACTAAAT-TCTAGTTGTGCATTTGGCA-AAAGGAGTCAATCATG-CAGTTAGATGAAACGTTA
66 AGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGG-TTCAATCATGCCAGTTAGATGAAAGGTTA
* * *
3711799 AATAACTTTGAGTAAAAGACTTAATGCCTAGA
130 AATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * *
3711831 TGTGCATTTGGTAGAAAGGTGTCAATCATGCTAGTTAGATGAAAGGTTAAACACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * * *
3711896 AGATTAAATGCCTAGATGTGTATTT--AA-AAAGGTGTCAATGATGCCAGTTAGATGAAAGGTTA
66 AGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTA
* * * *
3711958 AATACCTTTGACTAAATGACCAAATGCATAGT
130 AATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * * * * *
3711990 TATGCATTTGGCAGAAAGGT-TCCACTTAGGCCTGTTAGATGAAAGGTTAAATACCATTGAGTAA
1 TGTGCATTTGGCAGAAAGGTGT-CAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * * *
3712054 AAGACTAAATGCATAGTTGTGCATTTGGCA-AAAGGTGTGAATCATGCCAGTTAGATTAAAGGTT
65 AAGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTT
3712118 AAATACCTTTGAGTAAAAGAC--AAT---TA-T
129 AAATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * *
3712145 ACGTGCATTTGGCAGAAAGGTGCCAATCATGCCAGTTAGAT-AAAGGTTAAAAACCTTTGAGTAA
1 -TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* *
3712209 AAGACTAAAT-CC-AGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTG
65 AAGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTT
*
3712272 AAATACCTTTAAGTAAAAGACTAAATG-CTA-T
129 AAATACCTTTGAGTAAAAGACTAAATGCCTAGT
* ** * *
3712303 AGTGCATTTGGCATTAAGGTGCCAATCATGCCAGTTAGATGAATGG-TAAA-ACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * * * ** *
3712366 AAAGTAAATGCCTAGTTATGCTTTTGGCAA-AATTGTGTCAATCATGCCAGTTCGATGAAAGGTT
66 AGACTAAATGCCTAGTTGTGCATTTGG-AAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTT
* * * **
3712430 AAAT-CCTTTAAGTAAAAGTCT-AATCCCTAAA
129 AAATACCTTTGAGTAAAAGACTAAATGCCTAGT
* *
3712461 TGTGCATTTGGTAGAAAGGTG-CAATCATGCCAGTTAGATGAAAGGTT--ATACCTTTGAGTAAC
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * *
3712523 AGA-TAAATGCCTAGTTATGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGACGAAAGGTTA
66 AGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTA
* * *
3712587 AACACCTTTGAGTAAAAG-TTAAATGCCTAGA
130 AATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * * * *
3712618 TGTGTATTT-GCAAAAAGGTGTCAATCATGCCAGCTAGATGAAATGTTAATATA--TTTAAGT-A
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAA-ATACCTTTGAGTAA
* *
3712679 AAGACTAAATGCATAGTT-TGCATTTGGAAGAAAGGTACCAATCATGCCAGTTAGATGAAAGGTT
65 AAGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTT
* *
3712743 AAACACC-TTGAGTAAAAGACTAAATGCATAGT
129 AAATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * *
3712775 TGTACATTTGGCAGAAAGGTG-CAATCATGTCAGTTAGATGAAAGGTTAAATTCCTTT-AGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* ** *
3712838 ACACTAAATG-CTA-TTGTGCATTTGTTAGAAAGTTTCAATCATGCCAGTTAGATGAAA-GTTAA
66 AGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGTTCAATCATGCCAGTTAGATGAAAGGTTAA
* *
3712900 ATACCATTGAGTAAAAGACT-AATGCCTAGC
131 ATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * *
3712930 TGTGCATTTGG-AAAAAGGTGTCAATCATG-CAGTTAGTTGACAGGTTAAATACCTTTGAGT-AA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * * * * *
3712992 A-ACTGAATGACTAGCTGTGCATTTGGCAGAAAGGTGCCAATCAAGCCAGTTAGATGAAAGGTTA
66 AGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTA
** * * *
3713056 AATAAATTTGACTTAAAGACTAAATGTCTAG-
130 AATACCTTTGAGTAAAAGACTAAATGCCTAGT
* *
3713087 TGTGCATTTGGTAG-AA--TGTCAATCATGTCAGTTAGATGAAAGGTTAAATACC-TTGAGT--A
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * * * * *
3713146 A-ATTAAATG-CTAGCTGTGCATTTGGTAGAAATGTTTCAATAATGCCAGTTGGATGAAAGGTTA
66 AGACTAAATGCCTAGTTGTGCATTTGGAAGAAA-GGTTCAATCATGCCAGTTAGATGAAAGGTTA
3713209 AATA-CTTT-AGTAAAAGACTAAATGCCTAG-
130 AATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * * *
3713238 TGTACATTTGGAAGAAAGCTTTCAATCATGCCA-TTAGATGAAAGGTTAAATA-CTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * * * * *
3713301 AGAATAAATGCCTAGTTGTGCATTTGGTATAAATGTGTCAATCATGTCAGTTAGATGAATGGTTA
66 AGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTA
* *
3713366 AATA-CTTTGAGTAAAAGACTAAATACCTAGC
130 AATACCTTTGAGTAAAAGACTAAATGCCTAGT
* *
3713397 TGT--ATTTGG-AGAAA---G-C---CAT-----TT--ATGAAAGGCTGAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * **
3713445 AGACTAAATG-CTAG-TATGCATTTGGCAGAAAGGTGTCAATCATGCTTGTTAGATGAAA-GTTA
66 AGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTA
*
3713507 AATACCTTTGAGTAAAAGACTAAATGCATAG-
130 AATACCTTTGAGTAAAAGACTAAATGCCTAGT
* *
3713538 TGTGTATTT-G--G--A---G--AA--A-GCCAGTTAGATTAAAGGTT-AATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * * * *
3713589 AGACTAAATG-CTATTTGTGCATTTGGCAGAAAGGTGTCAGTCATGCCAGTTAGATGAAATGTCA
66 AGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTA
*
3713653 AATACCTTTGAGTAAAAGACTAAAT-TCTAGT
130 AATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * *
3713684 TGTGCATTTGGTATAAAGGTGTCAATCAAGCCAGTTAGAT-AAAGGTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * *
3713748 AGACTAAATGCCTAGTTGTGTATTT----GAAATGTGT-AATCAT-CCA-TTAGATGAAAGCTTA
66 AGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTA
* *
3713806 AATA-CTTT-AGTAAAAGATTAAATGCCTAGC
130 AATACCTTTGAGTAAAAGACTAAATGCCTAGT
** * *
3713836 TGTGCATTTGGCAGAAATATGTCAATCATGTCAGTTAGATGAAAGGTTAAATACCTTTGAATAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * * * * *
3713901 AGA-TTAATACCTAGATGT--ATTTTGCAGAAAGG-T-AA-CATGCCACTTACGATGAAA-G-TA
66 AGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGTTCAATCATGCCAGTTA-GATGAAAGGTTA
* * * * *
3713958 AATACATTTCAGTAAAATACTAATTGCATAGT
130 AATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * * * * * **
3713990 TATGCATTTGGAATAAATGTGCCAATCATG-CAGTTATATGAAATTTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * * * *
3714054 ATAATAAA-GCATAGTTGTGCATTTGGCAGAAAGGTGT-AATCATGCCAGTTAGATTAAAGGTTA
66 AGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTA
**
3714117 AATACCTTTGAGT-AAAGACTAAATGCCTAAC
130 AATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * * *
3714148 CGTGCATTTGGCAGAAAGGTGCCAATCATGCTAGTTAGATGAAAGGTTAAATATCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * * *
3714213 AGACTAATTGTCTAGCTGTGCATTTGG-A-AAAGGTGT-AATCATGCCAGTTAGATTAAAGGTTA
66 AGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTA
* * *
3714275 AATAACTTTGAGTAAAAGTCTAAATGACTAGT
130 AATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * * * *
3714307 T-TGCATTTAGCATAAAGGTGCCAATCATGCCAGTTAGATGAAATGTTAAATACCTTGGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * * *
3714371 AGACTAAATGACTAGTTGTGCATTTGGTAGAAAGGTGCCAAGCAT---AGTT--ATGAAAGGTTA
66 AGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTA
* * *
3714431 AATACCTTTGTGCAAAAGACTAAATGACTA--
130 AATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * *
3714461 -GTGCATTTGGCAAAAAGGTGCCAATCATGCCAGTTAGATGAAAGGTTAAATAAC-TTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3714524 AGACTAAATGCCTAGATGTGCATTTGGAA-AAAGGTTCCAATCATGCCAATTAGATGAAAGGTTA
66 AGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGTT-CAATCATGCCAGTTAGATGAAAGGTTA
* * *
3714588 AATATCTTTGAGTAAAAGAATAAATGCCTAGC
130 AATACCTTTGAGTAAAAGACTAAATGCCTAGT
* *
3714620 TGTGCATTTGGTAGAAATGGT-T-AATCATGCCA-TTAGATGAATGGTTAAATACCTTTGAGTAA
1 TGTGCATTTGGCAGAAA-GGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * * * * *
3714682 AAGACTAAATGCCTAGCTT-TGTATTTTGCAGAAAGTTGTGCAATCATGTCAGTTATATGAAAGG
65 AAGACTAAATGCCTAG-TTGTGCATTTGGAAGAAAG--GTTCAATCATGCCAGTTAGATGAAAGG
* **
3714746 CTAAATACCTTTGAGTAAAAGACTAAATGAATAGT
127 TTAAATACCTTTGAGTAAAAGACTAAATGCCTAGT
* *
3714781 TGTGCATTTGGCAGAAAGGTGTCAATAATGCCAGTTAGATGAAAGGTTAAATACCTATGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * * * * * * * * *
3714846 AGACTAAATGCATAGTTTTACATTTTGCAGAATGGTGTGAATC-TGTC-TTTAGATTAAAGGTTA
66 AGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTA
* *
3714909 AATACCTTTGAGTAAATGACTAAATGTCTA-T
130 AATACCTTTGAGTAAAAGACTAAATGCCTAGT
* *
3714940 CTGTGCATTTGGCAGAAAGGT-TCTAATCATGCCAGTTAGATTAAAGGTTAAATACTTTTGAGTA
1 -TGTGCATTTGGCAGAAAGGTGTC-AATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTA
* * ** *
3715004 AAAGATTAAATGCCTAGCTGTTAATTT-GACA-AAAAGTTACCAATCATGCCAGTTAGATGAAAG
64 AAAGACTAAATGCCTAGTTGTGCATTTGGA-AGAAAGGTT--CAATCATGCCAGTTAGATGAAAG
* * *
3715067 GTTAAATAACTTTGAGTAAAAGTCTAAATGACTAGT
126 GTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGT
* *
3715103 TGTGCTTTTGGCAGAAAAGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * * *
3715168 AGACTAAATGTCTAGTTGTGCATTTGGTAA-AAAGGTGTCAATCAAGCTAGTTATATGAAAGGTT
66 AGACTAAATGCCTAGTTGTGCATTTGG-AAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTT
* *
3715232 AAATACCTTTGTGTAGAAGACTAAAT-CACTA-T
129 AAATACCTTTGAGTAAAAGACTAAATGC-CTAGT
* * * * * *
3715264 ATGTACATTTGGTACAAAGGTGCCAATCATGCCAGTTAGATGAAAGATTAAATAACTTTGAGTAA
1 -TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * *
3715329 AAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTACCAATCTTGCCAGTTAGATGAAAGGTT
65 AAGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTT
*
3715394 AAATACCTTTGAGTAAAAGACTAAATGCCTAGC
129 AAATACCTTTGAGTAAAAGACTAAATGCCTAGT
*
3715427 TGTGCATTTGGCAGAAAGGTATCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * * *
3715492 AGACTAAATGCCTAGATGTGCATTGGGCAGAAAGGTTCCAATCATGCCAGTTAGATGAAAGTTTA
66 AGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGTT-CAATCATGCCAGTTAGATGAAAGGTTA
* *
3715557 AATGCCTTTGAGTAAAAGACTAAATGACTAGT
130 AATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * * * * *
3715589 TGTGCATTTGGTAGAAATGTG-CAATCATGCTAGTTATATGAAAGGTTAAATACCTTTGTGTAGA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * * * *
3715653 AGACTAAATGACTAGATGTGCATTTGTCAA-AAAGGTGCCAATCATGCCAGTTAGATGAAAGGAT
66 AGACTAAATGCCTAGTTGTGCATTTG-GAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTT
* * * *
3715717 AAATAACTTTGAGTAAAAGACTAATTTCCTAGA
129 AAATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * * * * **
3715750 TGTGCATTTGGTAGAAAGGTTTCAGTCATTCCAATTAGATGAAACCTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * *
3715815 AGACTAAATGCCCAGCTAGATGCATTT-GATAGAAATGGTGCCAATCATGCCAGTTAGATGAAAG
66 AGACTAAATGCCTAG-TTG-TGCATTTGGA-AGAAA-GGT-TCAATCATGCCAGTTAGATGAAAG
*
3715879 GTTAAATA-CTTTGAGTAAAAGACTAAATGCCTAGC
126 GTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * * *
3715914 TGTGCATTTTGCAGAAA-TTTTTAATCATGCCAGATT--ATGAAAGGCTTAAATACCTTTGAGTA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAG-TTAGATGAAAGG-TTAAATACCTTTGAGTA
* *
3715976 AAAGACTAAATG-C-AGCTTGTGCATTTGGCAGAAATG-TCAATCATGCCAGTTAGATGAAAGGT
64 AAAGACTAAATGCCTAG-TTGTGCATTTGGAAGAAAGGTTCAATCATGCCAGTTAGATGAAAGGT
3716038 TAAATACCTTTGAGTAAAAGACT-AAT-CC-AGT
128 TAAATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * * ** *
3716069 TGT--ATTTTGCAG-AA-TTGTGAATCATGCCTTTTAGATTAAAAGGTTAAATACCTTTGAGTAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGA-TGAAAGGTTAAATACCTTTGAGTAA
* *
3716130 ATGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTT
65 AAGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGG-T
*
3716195 TAAATA-CTTTGAGTAAAAGACTTAAATGCCTAGC
128 TAAATACCTTTGAGTAAAAGAC-TAAATGCCTAGT
* *
3716229 TGTGCATTTGG-A-AAAAG-GT-AATCATGCCAATTAGATGAAAGGTTAAATA-CTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* *
3716289 AGTCTAAATGCCTAGTTGTGCATTTGGCATA-AAAGGTGTCAATCATGCCACTTAGATGAAA-GT
66 AGACTAAATGCCTAGTTGTGCATTTGG-A-AGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGT
*
3716352 TAAATA-CTTTGAGTAAAAGACTAAATGTCTAGT
128 TAAATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * **
3716385 TGTGCATTTGGTAAAAAGGTAACAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGT--A
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
* * *
3716448 A-ACTAAAT-CACTAGTTGTGCATTTGGTA-AAATGTGCAATCATGCCAGTTAGATGAAAGGTTA
66 AGACTAAATGC-CTAGTTGTGCATTTGGAAGAAAGGTTCAATCATGCCAGTTAGATGAAAGGTTA
3716510 AATACCTTTGAGTAAAAGACTAAATGCCTAG-
130 AATACCTTTGAGTAAAAGACTAAATGCCTAGT
* * *
3716541 CGTTGCATTTGGCA-AAAGGTGCCAATCTTGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
1 TG-TGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * *
3716605 AAGACTAAATGCCTAGCTGTGCATTTGGCAA-AAAGGTGTGCCAATCATGCCAGTTAGATGTATG
65 AAGACTAAATGCCTAGTTGTGCATTTGG-AAGAAAGGT-T--CAATCATGCCAGTTAGATGAAAG
*
3716669 GTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGA
126 GTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGT
3716705 TGTTGCATTTGGCAGAAAGGT-TCCAATCATGTCCAGTTAGATGAAAGGTTAAATACCTTTGAGT
1 TG-TGCATTTGGCAGAAAGGTGT-CAATCATG-CCAGTTAGATGAAAGGTTAAATACCTTTGAGT
* * *
3716769 AAAAGACTAAATGCCTAG-TGTGCATTTTGCAGAAAGGTGGCAATCATGCCAGTTAGATGAAAGG
63 AAAAGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGG
3716833 TTAAATACCTTTGAGTAAAAGACTAAATG-CTAGT
127 TTAAATACCTTTGAGTAAAAGACTAAATGCCTAGT
*
3716867 TGTGCATTTTGCAGAAAGGT-T-AATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
1 TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
3716930 AGACTAAATG
66 AGACTAAATG
3716940 AGTATTTTGC
Statistics
Matches: 13545, Mismatches: 1803, Indels: 967
0.83 0.11 0.06
Matches are distributed among these distances:
139 3 0.00
141 12 0.00
142 61 0.00
143 23 0.00
144 49 0.00
145 53 0.00
146 36 0.00
147 1 0.00
149 3 0.00
150 10 0.00
151 115 0.01
152 118 0.01
153 453 0.03
154 328 0.02
155 359 0.03
156 904 0.07
157 972 0.07
158 1021 0.08
159 1289 0.10
160 1103 0.08
161 1327 0.10
162 4840 0.36
163 279 0.02
164 71 0.01
165 65 0.00
166 50 0.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.30
Consensus pattern (161 bp):
TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAA
AGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGTTCAATCATGCCAGTTAGATGAAAGGTTAA
ATACCTTTGAGTAAAAGACTAAATGCCTAGT
Found at i:3701480 original size:243 final size:242
Alignment explanation
Indices: 3700949--3716939 Score: 17920
Period size: 243 Copynumber: 67.0 Consensus size: 242
3700939 CATGCCAGTT
* *
3700949 CTGTGCATTTGGCAG-AAGGTG-CAAATCATGCCAGTTATATGAAAAAGGTTAAATACCTTTGGG
1 CTGTGCATTTGGCAGAAAGGTGTC-AATCATGCCAGTTAGATG--AAAGGTTAAATACCTTTGAG
* * * * *
3701012 T-AAA-ACTAAATGCATATT-TGTATTTGGAAGAAATGTGTCAATCATGCCAGTTATATGAAAGG
63 TAAAAGACTAAATGCCTATTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGG
* *** * * *
3701074 CTAAATATAATTGAGTAAAAGACTAAATGCATAGTTGTGCATTTGGAAGAAAGGTTTCAATCATG
128 TTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATG
* *
3701139 CCAGTTAGATTAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCATAG
193 CCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
* * * *
3701189 TTGTGCATTTGGAAGAAAGGT-ACAAATCATGCCAGTTAGATTAAAGGTTAAATACCATTT-AGT
1 CTGTGCATTTGGCAGAAAGGTGTC-AATCATGCCAGTTAGATGAAAGGTTAAATACC-TTTGAGT
* *
3701252 AAAAGACTAACTGACTATCTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGG
64 AAAAGACTAAATGCCTAT-TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGG
* * * * * * * *
3701317 TTTAATACCCTTGAGTAAAAGTCTAAATGACTAGTTGTGCATTCGACATAAAGGTGTCAACCATG
128 TTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATG
*
3701382 CCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGTCTAG
193 CCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
* * * * * *
3701432 CTGTGCATTTGGTAGAAAGGTGCCAATCATGCTAGTTATATGAAAGGTTAACTACCATTT-TGTA
1 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACC-TTTGAGTA
* * * * * * *
3701496 GAAGACTAATTGACTAGTTGTGCATTTGGGAAAAAGGTGACAATCATGCCAGTTAGATAAAAGGT
65 AAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGT
* * * * * *
3701561 TAAATAACTTTGAGTAGAAGAC-AAATGCGTAGATGTTCATTTGGTAGAAAGGT-TCCAATCATG
129 TAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGT-CAATCATG
* * * * *
3701624 CCAGTTAGATGAAAGGTTAAAAATCTTTGACTAAAAGATTAAGTGCCTAG
193 CCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
* * * * *
3701674 CAGTGCATTTGGTAGAAATGTGTCAATCACGCCAGTTAGATGAAAAGTTAAATACCTTTGAGTAA
1 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* ** * * * * *
3701739 AAGACTAAATGCCTAGCTACGTATTTTGCAGAAAGTTGTCAATCATGCCAGTTATATGAAAGGCT
66 AAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTT
* * * * * *
3701804 AAATATCTTTAAGTAAAAGACTAAATGCATACTTCTGCATTTGGGAGAAAGGTG-CAATCATGCC
130 AAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCC
* *
3701868 AGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGAATAAATGCATAG
195 AGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
* * * * *
3701916 TTGTGCATTTGGCAGAAAGGTGTGAATCATGCCAGTTAGATTAAAGGTTAAATA-TTTATGGGTA
1 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTT-TGAGTA
** * *
3701980 AAAGACTAAATGCCTATCTGTGCATTTTCCAGAAAGGTGCCAATCATGTCAGTTAGATGAAAGGT
65 AAAGACTAAATGCCTAT-TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGT
* * * * * *
3702045 CAAGTACCTTTGGGTAAAAGACTAAATGTCTAGTTATGCATTTGGCAGAATGGTGTCAATCATGC
129 TAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGC
* *
3702110 TAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTGAATGCCTAG
194 CAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
* * * * *
3702159 ATGTGCATTTGGTAGAAAGGT-ACCATCATGCCAGTTAGATGAAAGGTCAAATACCTTTGAGTAA
1 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * * * * * *
3702223 AAGACTAAATGTCTAGTTGTACATTTGGCAAAAAAGTGTCAATCATACAAGTTAGATGAAACGTT
66 AAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTT
* * * *
3702288 AAATACCTTTGAGTAAAAGACTTAATGCCTAGATGTGCATTTGGTAGAAAGGTGTCAATCATGCT
130 AAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCC
* *
3702353 AGTTAGATGAAAGGTTAAATACCTTTGAATAAAAGATTAAATGCCTAG
195 AGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
* * *
3702401 CTGTGCATTTTG-ATG-AAGAGTGTCAATCATGCTAGTTAGATGAAAGGTTAAACACCTTTGAGT
1 CTGTGCATTTGGCA-GAAAG-GTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGT
* * * * * *
3702464 AAAAGAAT-AATGCCTAGATGTGTATTTTGCA-AAA-ATGTCAATGATGCCAGTTAGATGAAAGG
64 AAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGG
* * * * * * *
3702526 TTAAATACCTTTAACTAAAATACTAAATGCATAGTTATGCATTTGGCAGAAAGGT-TCCACTCAG
128 TTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGT-CAATCAT
* * * *
3702590 GCCTGTTAGATGAAAGGTTAAATACCATTGAGTTAAAGACTAAATGCATAG
192 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
* * * * *
3702641 TTGTGCATTTGG-AAAAATGGTGTGAATCATGCCAGTTAGATTAAAGGTTAAATACATTTGAGTA
1 CTGTGCATTTGGCAGAAA-GGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTA
* * * * *
3702705 AAAGACTAAATGCTTATACGCGCATTTGGCATAAAGGTGCCAATCATGCCAGTTAGATGAAAGGT
65 AAAGACTAAATGCCTAT-TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGT
* * * * *
3702770 CAAATACCTTTGGGTAAAAGACTAAATGTCTAGTT-AGCATTTGGCAGAATGGTGTCAATCATGC
129 TAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGC
*
3702834 CAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTGAATGCCTAG
194 CAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
* * ** *
3702883 ATGTGCATTTGGTAGAAAGGTACCAATCATGCCAGTTAGATGAAAGGTCAAATACCTTTGAGTAA
1 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * * * * * *
3702948 AAGACTAAATGTCTAGTTGTACATTTGGCAAAAAAGTGTCAATCATACAAGTTAGATGAAACGTT
66 AAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTT
* * * *
3703013 AAATACCTTTGAGTAAAAGACTTAATGCCTAGATGTGCATTTGGTAGAAAGGTGTCAATCATGCT
130 AAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCC
*
3703078 AGTTAGATGAAA-GTTAAATACCTTTGA--AAAAGATTAAATGCCTAG
195 AGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
* * *
3703123 CTGTGCATTTTG-ATG-AAGAGTGTCAATCATGCTAGTTAGATGAAAGGTTAAACACCTTTGAGT
1 CTGTGCATTTGGCA-GAAAG-GTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGT
* * * * * *
3703186 AAAAGAATAAATGCCTAGATGTGTATTTTGCAAAAAGGTGTCAATGATGCCAGTTAGATGAAAGG
64 AAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGG
* * * *
3703251 TTAAATACCTTTGACT---A-ACTAAATGCATAGTTATGCATTTGGCAG-AAGGT-TCCACTCA-
128 TTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGT-CAATCAT
* * * *
3703309 GCCTGTTAGATGAAAGGTTAAATACCATTGAGTTAAAGACTAAATGCATAG
192 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
* * * *
3703360 TTGTGCATTTGGCA-AAATGGTGTGAATCATGCCAGTTAGATTAAAGGTTAAATACATTTGAGTA
1 CTGTGCATTTGGCAGAAA-GGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTA
* * * *
3703424 AAAGACTAAATGCTTATACGCGCATTTGGCAGAAAGGTGCCAATCATGCCAGTTAGATGAAAGGT
65 AAAGACTAAATGCCTAT-TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGT
* * * * * * *
3703489 CAAATACCTTTGGGTTAAAGACTAAATGTCTAGTTATGCATTTGGCAGAATGGTATCAATCATGC
129 TAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGC
*
3703554 CAGTTAGATGAAAGGTTAAATACCTTTGAGT-AAA-ACTGAATGCCTAG
194 CAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
* * ** * *
3703601 ATGTGCATTTGGTAGAAAGGTACCAATCATGCCAGTTAGATGAAAGGTCAAATATCTTTGAGTAA
1 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * * * * *
3703666 AAGACTAAATGTCTAGTTGTGCATTTGGCAAAAAAGTGTCAATCATACAAGTTAGATGAAACGTT
66 AAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTT
* * * *
3703731 AAATACCTTTGAGTAAAAGACTTAATGCCTAGATGTGCATTTGGTAGAAAGGTGTCAATCATGCT
130 AAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCC
* *
3703796 AGTTAGATGAAAGGTTAAATACCTTTGAATAAAAGATTAAATGCCTAG
195 AGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
* * * *
3703844 CTGTGCATTTTG-ATG-GAGAGTGTCAATCATGCTAGTTAGATGAAAGGTTAAACACCTTTGAGT
1 CTGTGCATTTGGCA-GAAAG-GTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGT
* * * * * *
3703907 AAAAGAATAAATGCCTAGATGTGTATTTTGC--AAA--TGTCAATGATGCCAATTAGATGAAAGG
64 AAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGG
* * * * *
3703968 TTAAATACCTTTGACTAAAATACTAAATG-CT--TTATGCATTTGGCAGAAAGGT-TCCACTCAG
128 TTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGT-CAATCAT
* * * *
3704029 GCCTGTT--ATGAAAGGTTAAATACCATTGAGTTAAAGACTAAATGCATAG
192 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
* * * * *
3704078 TTGTGCATTTGGCA-AAATGCTGTGAATCATGCCAGTTAGATTAAAGGTTAAATACATTTGAGTA
1 CTGTGCATTTGGCAGAAA-GGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTA
* * * *
3704142 AAAGACTAAATGCTTATACGCGCATTTGGCAGAAAGGTGCCAATCATGCCAGTTAGATGAAAGGT
65 AAAGACTAAATGCCTAT-TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGT
* * * * *
3704207 CAAATACCTTTGGGTAAAAGACTAAATGTCTAGTTATGCATTTGGCAGAATGGTGTCAATCATGC
129 TAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGC
* *
3704272 TAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTGAATGCCTAG
194 CAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
* * ** * * *
3704321 ATGTGCATTTGGTAGAAAGGTACCAATCATGCCAGTTAGATGAAAGGTCAAGTACCTTTGGGTAA
1 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * * *
3704386 AAGACTAAATGTCTAGTGATGCATTTGGCAGAATGGTGTCAATCATGCTAGTTAGATGAAAGGTT
66 AAGACTAAATGCCTATTG-TGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTT
* * * **
3704451 AAATACCTTTGAGTAAAAGACTGAATGCCTAGATGTGCATTTGGTAGAAAGGTACCAATCATGCC
130 AAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCC
* *
3704516 AGTTAGATGAAAGGTCAAATACCTTTGAGTAAAAGACTAAATGTCTAG
195 AGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
* * * * * * *
3704564 TTGTACATTTGGCAAAAAAGTGTCAATCATACAAGTTAGATGAAACGTTAAATACCTTTGAGTAA
1 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * * *
3704629 AAGACTTAATGCCTAGATGTGCATTTGGTAGAAAGGTGTCAATCATGCTAGTTAGATGAAAGGTT
66 AAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTT
* * * *
3704694 AAATACCTTTGAATAAAAGATTAAATGCCTAGCTGTGCATTTTG-ATG-AAGAGTGTCAATCATG
130 AAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCA-GAAAG-GTGTCAATCATG
* * *
3704757 CTAGTTAGATGAAAGGTTAAACACCTTTGAGTAAAAGAATAAATGCCTAG
193 CCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
* * * * * * *
3704807 ATGTGTATTTTGCAAAAATGG-GTC-ATGATGCCAGTTAGATGAAAGGTT-AA-ACCTTTAACTA
1 CTGTGCATTTGGCAGAAA-GGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTA
* * * * *
3704868 AAATACTAAATGCATAGTTATGCATTTGGCA-AAAGGT-TCCA-CA-GCCTGTT--ATGAAAGGT
65 AAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGT
* * * *
3704927 TAAATACCATTGAGTTAAAGACTAAATGCATAGTTGTGCATTTGGCA-AAATGGTGTGAATCATG
129 TAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAA-GGTGTCAATCATG
* * * *
3704991 CCAGTTAGATTAAAGGTTAAATACATTTGAGTAAAAGACTAAATGCTTATA
193 CCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-G
* * * * *
3705042 C-GCGCATTTGGCATAAAGGTGCCAATCATGCCAGTTAGATGAAAGG-TCAATACCTTTGGGT-A
1 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * *
3705104 AAGACTAAA-GTCTAGTTATGCATTTGGCAGAATGGTGTCAATCATGCCAGTTAGATGAAAGGTT
66 AAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTT
* * * **
3705168 AAATACCTTTGAGTAAAAGACTGAATGCCTAGATGTGCATTTGGTAGAAAGGTACCAATCATGCC
130 AAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCC
* *
3705233 AGTTAGATGAAAGGTCAAATACCTTTGAGTAAAAGACTAAATGTCTAG
195 AGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
* * * * *
3705281 TTGTACATTTGGCA-AAAAGTGTCAATCAT-ACAGTTAGATGAAACGTTAAATACCTTTGAGTAA
1 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * * *
3705344 AAGACTTAATGCCTAGATGTGCATTTGGTAGAAAGGTGTCAATCATGCTAGTTAGATGAAAGGTT
66 AAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTT
* * * * *
3705409 AAATACCTTTGAATAAAAGATTAAATGCCTAGCTGTGCATTT-G--G-AAGGTCTCAATCATGCT
130 AAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCC
* *
3705470 AGTTAGATGAAAGGTTAAACACCTTTGAGTAAAAGAATAAATGCCTAG
195 AGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
* * * * * *
3705518 ATGTGTATTT-GCAAAAAGGTGTCAATGATCCCAG-TAGATGAAAGGTTAAATACCTTTGACTAA
1 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * * * * *
3705581 AATACTAAATGCATAGTTATGCATTTGGCAGAAAGGT-TCCACTCAGGCCTGTTAGATGAAAGGT
66 AAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGT-CAATCATGCCAGTTAGATGAAAGGT
* * * *
3705645 TAAATACCATTGAGTTAAAGACTAAATGCATAGTTGTGCATTTGGCA-AAATGGTGTGAATCATG
129 TAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAA-GGTGTCAATCATG
* * * *
3705709 CCAGTTAGATTAAAGGTTAAATACATTTGAGTAAAAGACTAAATGCTTAT
193 CCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
* * *
3705759 C-GCGCATTTGGCAGAAAGGTGCCAATCATGCCAGTTAGATGAAAGGTCAAATACCTTTG-GTAA
1 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * *
3705822 AAGACTAAATGTCTAGTTATGCATTTGGCAGAATGGTGTCAATCATGCCAGTTAGATGAAAGGTT
66 AAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTT
* * * **
3705887 AAATACCTTTGAGTAAAAGACT-GATG-CTAGATGTGCATTTGGTAGAAAGGTACCAATCAT---
130 AAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCC
* * *
3705947 -GTTAGATGAAAGGTCAAATATC-TTGAGTAAAAGACTAAATGTCTAG
195 AGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
* * * * * *
3705993 TTGTGCATTTGGCAAAAAAGTGTCAATCATACAAGTTAGATGAAACGTTAAATACCTTTGAGTAA
1 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * * *
3706058 AAGACTTAATGCCTAGATGTGCATTTGGTAGAAAGGTGTCAATCATGCTAGTTAGATGAAAGGTT
66 AAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTT
* * * *** * *
3706123 AAATACCTTTGAATAAAAGATTAAATGCCTAGCTGTGCATTTGATGGAGA-GTGTCAATCATGCT
130 AAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCC
*
3706187 AGTTAGATG-AAGGTT-AACACCTTTGAGTAAAAGA-TAAATGCCTAG
195 AGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
* * * * * *
3706232 ATGTGTATTTTGCA-AAAGGTGTCAATGATGCCAATTAGATG-AAGGTTAAATACCTTTGACTAA
1 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * * * *
3706295 AATACT-AATGCATAGTTATGCATTTGGCAGAAAGGT-TCCACTCA-GCCTGTTAGATG--AGGT
66 AAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGT-CAATCATGCCAGTTAGATGAAAGGT
* * * * *
3706355 TAAATACCATTGAGTTAAAGACTAAATGCATAGTTGTGCATTTGGCA-AAATGCTGTGAATCATG
129 TAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAA-GGTGTCAATCATG
* * * *
3706419 CCAGTTAGATTAAAGGTTAAATACATTTGAGTAAAAGACTAAATGCTTATA
193 CCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-G
* * *
3706470 C-GCGCATTTGGCAGAAAGGTGCCAATCATGCCAGTTAGATGAAAGGTCAAATACCTTTG-GTAA
1 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * * *
3706533 AAGACTAAATGTCTAGTTATGCATTTGGCAGAATGGTGTCAATCATGCTAGTTAGATGAAAGGTT
66 AAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTT
* * **
3706598 AAATACCTTTGAGTAAAAGACTGAATGCCTAGATGTGCATTT----GAAAGGTACCAATCATGCC
130 AAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCC
* *
3706659 AGTTAGATGAAAGGTCAAATACCTTTGAGTAAAAGACTAAATGTCTAG
195 AGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
* * * * *
3706707 TTGTACATTT-GCA-AAAAGTGTCAATCAT-ACAGTT--ATGAAACGTTAAATACCTTTGAGTAA
1 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * * *
3706767 AAGACTTAATGCCTAGATGTGCATTTGGTAGAAAGGTGTCAATCATGCTAGTTAGATGAAAGGTT
66 AAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTT
* * * * *
3706832 AAATACCTTTGAATAAAAGA-TTAATGCCTAGCTGTGCATTTTG-ATG-AAGATGTCAATCATGC
130 AAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCA-GAAAGGTGTCAATCATGC
* * *
3706894 TAGTTAGATGAAAGGTTAAACACCTTTGAGTAAAAGAATAAATGCCTAG
194 CAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
* * * * *
3706943 ATGTGTATTTTGCA-AAA-GTGTCAATGATGCCAGTTAGATGAAAGGTTAAATACCTTTGACTAA
1 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * * * *
3707006 AATACTAAATGCATAGTTATGCATTTGGCAGAAAGGT-TCCACTCA-GCCTGTTAGATGAAAGGT
66 AAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGT-CAATCATGCCAGTTAGATGAAAGGT
* * * * *
3707069 TAAATACCATTAAGTTAAAGACT-AATGCATAGTT-TGCATTTGGCA-AAATGGTGTGAATCATG
129 TAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAA-GGTGTCAATCATG
* * * *
3707131 CCAGTTAGATTAAAGGTTAAATACATTTGAGTAAAAGACTAAATGCTTATA
193 CCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-G
* * *
3707182 C-GCGCATTTGGCAGAAAGGTGCCAATCATGCCAGTTAGATGAAAGG-TCAA-A----T-AGTAA
1 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * *
3707239 AAGACTAAATGTCTAGTTGTGCATTTGGCA-AAA-GTGTCAATCATGCTAGTTAGATGAAACGTT
66 AAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTT
* * * *
3707302 AAATACC-TTGAGT-AAAGACTTAATGCCTAGATGTGCA-TTGGTAGAAAATGTGTCAATCATGC
130 AAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAG-AAAGGTGTCAATCATGC
* ** * * *
3707364 TAGTTAGATGAAAGGTT-AATACCTTTTTGTAGAAGACTAATTGACTAG
194 CAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
* * * * * *
3707412 TTGTGCATTTAG-AAAAAGGTGCCAATCATGCCAGTTAGATAAAAGGTTAAATA-CTTTGAGTAG
1 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * * * * *
3707475 AAGACTAAAGGCGTAGATGTTCATTTGGTAGAAAGGT-TCAATCATG-CAGTTAAATG-AAGGTT
66 AAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTT
* * * ** * * *
3707537 AAATATCTTTGAGTAAAAGATTAAGTGCCTAGCAGTGCATTTGGTAGAAATGTGTCAATCACGCC
130 AAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCC
* * *
3707602 AGTTAGATGAAAAGTGAAATACCTTTGAGTAAAAGACTAAATTCCTAG
195 AGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
** * * * * * * *
3707650 CTACGTATTTTGTAGAAAGTTGTCAATCATGCCAGTTATATGAAAGGCTT-AATATCTTTAAGTA
1 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGG-TTAAATACCTTTGAGTA
* * * * *
3707714 AAAGACTAAA-GCATA-T-CGCA-TTGGGAGAAAGGTGCCAAACATGCCAGTTAGATG-AAGGTT
65 AAAGACTAAATGCCTATTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTT
* * *
3707774 AAATACCTTTGAGTAAAAGAAT-AATG-CTAGTTGTGCATTTGGCAGAAAGGGGTGAATCATGCC
130 AAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCC
** * *
3707837 AGTTAGAT-AAAGGTTAAATA--TTTCTGTAAAAGACTAAATACCTAT
195 AGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
* * * *
3707882 CTGTGCATTTGGCATAAATGTGCCAATCATGCCAGTTAGATGAAAGGTCAAATACCTTT-AGGTA
1 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGA-GTA
* * * * *
3707946 AAATACTAAATGTCTAGTTATGCATTTGGCAGAATGGTGTCAATCATGCCAGTTAGATGAACGGT
65 AAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGT
* * * *
3708011 TAAATACCTTTGAGTAAAAGACTGAATGCCTAGATGTGCATTTGGTAGAAAGGTGCCAATCATGC
129 TAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGC
* *
3708076 CAGTTAGATGAAAGGTCAAATACCTTTGAGTAAAAGACTAAATGTCTAG
194 CAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
* * * *
3708125 TTGTGCATTTGGCAAAAAGGTGTCAATCATGCTAGTTAGATGAAACGTTAAATACCTTTGAGTAA
1 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * * * *
3708190 AAGACTTAATGCCTAGATGTGCATTTGGTAGAAAGGTATCAATCATGCTAGTTAGATGAAAGGTT
66 AAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTT
* * * * * * *
3708255 ACATACCTTTAAATAAAAGATTAAATGCCTAGCTGTGCATTTGGCTG-AAGAGTGCCAATCATGC
130 AAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAG-GTGTCAATCATGC
* ** *
3708319 TAGTTAGATGAAAGGTTAAGCACCTTTGAGTAAAAGATTAAATGCCTAG
194 CAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
* * ** * * *
3708368 ATGTGTATTTTACAAAAAGGTGTCAATGATGCCAGTTAGATGAAAGGTTAAATACCTTTGACTAA
1 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * * *
3708433 AAGACTAAATGCATAGTTATGCATTTGGCAGAAAGGT-TCAACTCAGGCCTGTTAGATGAAAGGT
66 AAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAA-TCATGCCAGTTAGATGAAAGGT
* ** *
3708497 TAAATACCATTGAGTAAAAGACTAAATGTATAGTTGTGCATTTGGCA-AAATGGTGTGAATCATG
129 TAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAA-GGTGTCAATCATG
* * * *
3708561 CCAGTTAGATTAAAGGTTAAATACATTTGAGTAAAAGACTAAATGCTTATA
193 CCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-G
* * * * *
3708612 C-GTGCATTTGGAAGAAAGGTGCCAATCATGCCAGTTATATGAAAGGTCAAATACCTTTGGGTAA
1 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * *
3708676 AAGACTAAATGTCTAGTTATGCATTTGGCAGAATGGTGTCAATCATGCCAGTTAGATGAAAGGTT
66 AAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTT
* * * *
3708741 AAATACCTTTGAGTAAAAGACTGAATG-CTAG--ATGCATTTGGTAGAAAGGTGCCAATCATGCC
130 AAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCC
*
3708803 AGTTAGATGAAAGGTCAAATA-CTTTGAGTAAAAGACTAAATG--TAG
195 AGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
* * * * *
3708848 TTGTGCATTTGGCAAAAAGGTGTCAATCATACTAGTTAGATGAAACGTTAAATACCTTTGAGTAA
1 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * * *
3708913 AAGACTTAATGCCTATTTGTGCATTTGGTAGATAGGTGTCAATCATGCTAGTTAGATGAAAGGTT
66 AAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTT
** * * *
3708978 AAATACCTTTGAAAAAAAGATTAAATGCCTAGCTGTGCATTTGGCTG-AAGAGTGTCAATCATGC
130 AAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAG-GTGTCAATCATGC
* * * *
3709042 TAGTTAGATGAAAGGTTAAACACCTTTGATTAAAAGATTAAATGCCTAG
194 CAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
* * * * * * * * *
3709091 ATTTGTATTTTGTAAAAAGGTGTGAATGATGCCAGTTAGATGAAAGGTTAAATACCTTTGACTAA
1 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * * * *
3709156 AAGACTAAATTCATAGTTATGCATTTGGCAGAAAGGT-TCCACTCA-GGCATGTTAGATGAAAGG
66 AAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGT-CAATCATGCCA-GTTAGATGAAAGG
* * *
3709219 TTAAATACCATTGAGTAAAAGACTAAATGCATAGTTGTGCATTTGGCA-AAATGGTGTGAATCAT
128 TTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAA-GGTGTCAATCAT
* * * *
3709283 GCCAGTTAGATTAAAGGTTAAATACATTTGAGTAAAAGACTAAATGCTTATA
192 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-G
* * * *
3709335 C-GTGCATTTGGAAGAAAGGTGCCAATCATGCCAGTTAGATGAAAGGTCAAATACCTTTGGGTAA
1 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * *
3709399 AAGACTAAATGTCTAGTTATGCATTTGGCAGAATGGTGTCAATCATGCCAGTTAGATGAAAGGTT
66 AAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTT
* * * *
3709464 AAATACCTTTGAGTAAAAGACTGAATGCCTAGATGTGCATTTGGTAGAAAGGTGCCAATCATGCC
130 AAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCC
* *
3709529 AGTTAGATGAAAGGTCAAATACCTTTGAGTAAAAGACTAAATGTCTAG
195 AGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
* * * * *
3709577 TTGTGCATTTGGCAAAAAGGTGTCAATCATACTAGTTAGATGAAACGTTAAATACCTTTGAGTAA
1 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * * *
3709642 AAGACTTAATGCCTATTTGTGCATTTGGTAGATAGGTGTCAATCATGCTAGTTAGATGAAAGGTT
66 AAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTT
** * * *
3709707 AAATACCTTTGAAAAAAAGATTAAATGCCTAGCTGTGCATTTGGCTG-AAGAGTGTCAATCATGC
130 AAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAG-GTGTCAATCATGC
* * * *
3709771 TAGTTAGATGAAAGGTTAAACACCTTTGATTAAAAGATTAAATGCCTAG
194 CAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
* * * * * * * * *
3709820 ATTTGTATTTTGTAAAAAGGTGTGAATGATGCCAGTTAGATGAAAGGTTAAATACCTTTGACTAA
1 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * * * * *
3709885 AAGACTAAATTCATAGTTATGCATTTGGCAGAAAGGT-TCCACTCAGGCCTGTTAGATGAAAGGT
66 AAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGT-CAATCATGCCAGTTAGATGAAAGGT
* * *
3709949 TAAATACCATTGAGTAAAAGACTAAATGCATAGTTGTGCATTTGGCA-AAATGGTGTGAATCATG
129 TAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAA-GGTGTCAATCATG
* * * *
3710013 CCAGTTAGATTAAAGGTTAAATACATTTGAGTAAAAGACTAAATGCTTATA
193 CCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-G
* * *
3710064 C-GTGCATTTGGCAGAAAGGT-TCCAATCATGCCAGTTAGATAAAAGGTCAAAAACCTTTGAGTA
1 CTGTGCATTTGGCAGAAAGGTGT-CAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTA
* *
3710127 AAAGACTAAATGTCTAGTTGAGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGT
65 AAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGT
* * * * * *
3710192 TAAATACCTTTAAATAAAAGGCTAAATCCCTAGATATGCATTTGGCAGAAAGGTGTCAATCATGC
129 TAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGC
* * * *
3710257 CACTTAAATGAAAGGTAAAATACCTTTGAGTAAAAGACAAAATGCCTAG
194 CAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
* * * * * * * * *
3710306 TTGTGCTTTTGGCAAAAATGTTTCAATCATGCTAGTTTGATGAAAGGTTAAATCCCTTTAAGTAA
1 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * * *
3710371 AAGACTTAATGCCTAAATGTGCATTTGGTAGAAAGGTGGCAATCATGCCAGTTAGATGAAAGGTT
66 AAGACTAAATGCCT-ATTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTT
** * * * *
3710436 AAATACCTTTGAACAACAGATTAGATGCCTAGTTGTGCATTTGGCAGGAAGGTGTCAATCATGCC
130 AAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCC
* * *
3710501 AGTTAGACGAAAGGTTAAACACCTTTGAGTAAAAGATTAAATGCCTAG
195 AGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
* * * * * * ** *
3710549 ATGTGTATTTTGCAAAAAGG-GTTCAATCATGCCAGCTAGATGAAATGTTAAATATATTTAAGTA
1 CTGTGCATTTGGCAGAAAGGTG-TCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTA
* * * * **
3710613 AAAGACTAAATGCATAGTTTTGCATTTGGAAGAAAGTTACCAATCATGCCAGTTAGATGAAAGGT
65 AAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGT
** *
3710678 TAAATACC-TTGCAGTAAAAGACTAAATGAATAGTTGTGCATATGGCAGAAAGGTG-CAAATCAT
129 TAAATACCTTTG-AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTC-AATCAT
* * * *
3710741 GCCAGTTAGATGAAAGATTAAATACCTTTTAGTAAAAGACTAAATGTCTAT
192 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
** *
3710792 CTGTGCATTTGTTAGAAAGGTGTCAATCATGCCAGTTAGATGAAAAGTTAAATACCTTTGAGTAA
1 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * * * * * * *
3710857 AAGTCTGAATGACTAGTTCTGCATTTGGGAGAAAGGTGCCAATCAAGCCAGTTAGATGAAAGATT
66 AAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTT
* * * * * *
3710922 AAATAACTTTGAGTAAAAGACTAAATGTCTAGTTGTGCATTTGGTAGAAATGTATCAATCATGTC
130 AAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCC
* *
3710987 GGTTAGATGAAAGGTTAAAT--CTCTTGAGTAAAAGATTAAATGCCTAG
195 AGTTAGATGAAAGGTTAAATACCT-TTGAGTAAAAGACTAAATGCCTAG
* * * * * *
3711034 CTAT-CATTTGGTAGAAATGTGTCAATCATGCCAGTTGGATGAAAGGTTAAATAACTTTTAGTAA
1 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* ** * * *
3711098 AAGTCTAAATGCCTAGAAGTACATTTGGAAGAAAGGT-TCCAATCATGCCAATTAGATGAAAGGT
66 AAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGT-CAATCATGCCAGTTAGATGAAAGGT
* * * * *
3711162 TAAATATCC-TTCAGTAAAAGAATAAATGCCTAGCTGTGCATTTGGTAGAAATGTGTCAATCATG
129 TAAATA-CCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATG
* *
3711226 TCAGTTAGATGAATGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
193 CCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
* * * * * * *
3711276 CTTTGTATTTTGCAGAAAGTTGTCAATCATGTCAGTTATATGAAAGGCTAAATACCTTTGAGTAA
1 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
** * *
3711341 AAGACTAAATGAATAGTTGTGCATTTGGGAGAAAGGTATCAATCATGCCAGTTAGATGAAAGG-T
66 AAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTT
* *
3711405 AAATACCTTTGAGTAAAAGA--ATATG-CTAGTTGTGCATTTGGCAGAAAGGTGTGAATCATG-C
130 AAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCC
** * ** *
3711466 AGTTAGAT-AAAGGTTAAATATTTTTGGGTAAAAGACTAAATTTCTAT
195 AGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
* * *
3711513 CTGTGCATTTGGCAGAAAGGT-TCCAATCATGCCAGTTATATGATAGGTCAAATACCTTTGAGTA
1 CTGTGCATTTGGCAGAAAGGTGT-CAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTA
* * *
3711577 AAAGA--ATAT--C-ATTGTTAGCATTTGACAGAATGGTGTCAATCATGCCAGTTAGATGAAAGG
65 AAAGACTAAATGCCTATTG-T-GCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGG
* *
3711637 TTAAATACCTTTGAGTAAAAGACTAAATGCCTAGATGTGCATTTGGAAGAAAGGTGTCAATCATG
128 TTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATG
* *
3711702 CCAGTTAGATGAAAGGTCAAATACCTTTGAGTAAAAGACTAAAT-TCTAG
193 CCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
* * * *
3711751 TTGTGCATTTGGCA-AAAGGAGTCAATCATG-CAGTTAGATGAAACGTTAAATAACTTTGAGTAA
1 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * * *
3711814 AAGACTTAATGCCTAGATGTGCATTTGGTAGAAAGGTGTCAATCATGCTAGTTAGATGAAAGGTT
66 AAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTT
* * * * * *
3711879 AAACACCTTTGAGTAAAAGATTAAATGCCTAGATGTGTATTT---AAAAAGGTGTCAATGATGCC
130 AAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCC
* * * *
3711941 AGTTAGATGAAAGGTTAAATACCTTTGACTAAATGACCAAATGCATAG
195 AGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
* * * * * * *
3711989 TTATGCATTTGGCAGAAAGGT-TCCACTTAGGCCTGTTAGATGAAAGGTTAAATACCATTGAGTA
1 CTGTGCATTTGGCAGAAAGGTGT-CAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTA
* * *
3712053 AAAGACTAAATGCATAGTTGTGCATTTGGCA-AAAGGTGTGAATCATGCCAGTTAGATTAAAGGT
65 AAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGT
* *
3712117 TAAATACCTTTGAGTAAAAGAC--AAT---TA-TACGTGCATTTGGCAGAAAGGTGCCAATCATG
129 TAAATACCTTTGAGTAAAAGACTAAATGCCTAGT-TGTGCATTTGGCAGAAAGGTGTCAATCATG
*
3712176 CCAGTTAGAT-AAAGGTTAAAAACCTTTGAGTAAAAGACTAAAT-CC-AG
193 CCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
* * *
3712223 TTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTGAAATACCTTTAAGTAA
1 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* ** * *
3712288 AAGACTAAATG-CTATAGTGCATTTGGCATTAAGGTGCCAATCATGCCAGTTAGATGAATGG-TA
66 AAGACTAAATGCCTATTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTA
* * * * *
3712351 AA-ACCTTTGAGTAAAAAAGTAAATGCCTAGTTATGCTTTTGGCA-AAATTGTGTCAATCATGCC
131 AATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAA-GGTGTCAATCATGCC
* * * * *
3712414 AGTTCGATGAAAGGTTAAAT-CCTTTAAGTAAAAGTCT-AATCCCTAA
195 AGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
* *
3712460 ATGTGCATTTGGTAGAAAGGTG-CAATCATGCCAGTTAGATGAAAGGTT--ATACCTTTGAGTAA
1 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * *
3712522 CAGA-TAAATGCCTAGTTATGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGACGAAAGGTT
66 AAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTT
* * * * *
3712586 AAACACCTTTGAGTAAAAG-TTAAATGCCTAGATGTGTATTT-GCAAAAAGGTGTCAATCATGCC
130 AAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCC
* * * *
3712649 AGCTAGATGAAATGTTAATATA--TTTAAGT-AAAGACTAAATGCATAG
195 AGTTAGATGAAAGGTTAA-ATACCTTTGAGTAAAAGACTAAATGCCTAG
* * ** *
3712695 -TTTGCATTTGGAAGAAAGGTACCAATCATGCCAGTTAGATGAAAGGTTAAACACC-TTGAGTAA
1 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * *
3712758 AAGACTAAATGCATAGTTGTACATTTGGCAGAAAGGTG-CAATCATGTCAGTTAGATGAAAGGTT
66 AAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTT
* * ** *
3712822 AAATTCCTTT-AGTAAAACACTAAATG-CTA-TTGTGCATTTGTTAGAAA-GTTTCAATCATGCC
130 AAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCC
*
3712883 AGTTAGATGAAA-GTTAAATACCATTGAGTAAAAGACT-AATGCCTAG
195 AGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
* * *
3712929 CTGTGCATTTGG-AAAAAGGTGTCAATCATG-CAGTTAGTTGACAGGTTAAATACCTTTGAGT-A
1 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * * * *
3712991 AA-ACTGAATGACTAGCTGTGCATTTGGCAGAAAGGTGCCAATCAAGCCAGTTAGATGAAAGGTT
66 AAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTT
** * * * * *
3713055 AAATAAATTTGACTTAAAGACTAAATGTCTAG-TGTGCATTTGGTAG-AA--TGTCAATCATGTC
130 AAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCC
*
3713116 AGTTAGATGAAAGGTTAAATACC-TTGAGT--AA-ATTAAATG-CTAG
195 AGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
* * * * *
3713159 CTGTGCATTTGGTAGAAATGTTTCAATAATGCCAGTTGGATGAAAGGTTAAATA-CTTT-AGTAA
1 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * * * *
3713222 AAGACTAAATGCCTAGTGTACATTTGGAAGAAAGCTTTCAATCATGCCA-TTAGATGAAAGGTTA
66 AAGACTAAATGCCTATTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTA
* * * * *
3713286 AATA-CTTTGAGTAAAAGAATAAATGCCTAGTTGTGCATTTGGTATAAATGTGTCAATCATGTCA
131 AATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCA
* *
3713350 GTTAGATGAATGGTTAAATA-CTTTGAGTAAAAGACTAAATACCTAG
196 GTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
* *
3713396 CTGT--ATTTGG-AGAAA---G-C---CAT-----TT--ATGAAAGGCTGAATACCTTTGAGTAA
1 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * **
3713444 AAGACTAAATG-CTAGTATGCATTTGGCAGAAAGGTGTCAATCATGCTTGTTAGATGAAA-GTTA
66 AAGACTAAATGCCTATTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTA
* *
3713507 AATACCTTTGAGTAAAAGACTAAATGCATAG-TGTGTATTT-G--G--A---G--AA--A-GCCA
131 AATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCA
* *
3713558 GTTAGATTAAAGGTT-AATACCTTTGAGTAAAAGACTAAATG-CTAT
196 GTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
* * * *
3713603 TTGTGCATTTGGCAGAAAGGTGTCAGTCATGCCAGTTAGATGAAATGTCAAATACCTTTGAGTAA
1 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * * *
3713668 AAGACTAAAT-TCTAGTTGTGCATTTGGTATAAAGGTGTCAATCAAGCCAGTTAGAT-AAAGGTT
66 AAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTT
* *
3713731 AAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGTATTT----GAAATGTGT-AATCAT-CC
130 AAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCC
* *
3713790 A-TTAGATGAAAGCTTAAATA-CTTT-AGTAAAAGATTAAATGCCTAG
195 AGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
** * *
3713835 CTGTGCATTTGGCAGAAATATGTCAATCATGTCAGTTAGATGAAAGGTTAAATACCTTTGAATAA
1 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * * * *
3713900 AAGA-TTAATACCTA--GATGTATTTTGCAGAAA-G-GT-AA-CATGCCACTTACGATGAAA-G-
66 AAGACTAAATGCCTATTG-TGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTA-GATGAAAGGT
* * * * * * * * * *
3713956 TAAATACATTTCAGTAAAATACTAATTGCATAGTTATGCATTTGGAATAAATGTGCCAATCATG-
129 TAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGC
* ** * * *
3714020 CAGTTATATGAAATTTTAAATACCTTTGAGTAAAATAATAAA-GCATAG
194 CAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
* *
3714068 TTGTGCATTTGGCAGAAAGGTGT-AATCATGCCAGTTAGATTAAAGGTTAAATACCTTTGAGT-A
1 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
** * *
3714131 AAGACTAAATGCCTAACCGTGCATTTGGCAGAAAGGTGCCAATCATGCTAGTTAGATGAAAGGTT
66 AAGACTAAATGCCT-ATTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTT
* * * *
3714196 AAATATCTTTGAGTAAAAGACTAATTGTCTAGCTGTGCATTTGG-A-AAAGGTGT-AATCATGCC
130 AAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCC
* * * *
3714258 AGTTAGATTAAAGGTTAAATAACTTTGAGTAAAAGTCTAAATGACTAG
195 AGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
* * * * * *
3714306 -TTTGCATTTAGCATAAAGGTGCCAATCATGCCAGTTAGATGAAATGTTAAATACCTTGGAGTAA
1 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * * *
3714370 AAGACTAAATGACTAGTTGTGCATTTGGTAGAAAGGTGCCAAGCAT---AGTT--ATGAAAGGTT
66 AAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTT
* * * * *
3714430 AAATACCTTTGTGCAAAAGACTAAATGACTA---GTGCATTTGGCAAAAAGGTGCCAATCATGCC
130 AAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCC
*
3714492 AGTTAGATGAAAGGTTAAATAAC-TTGAGTAAAAGACTAAATGCCTAG
195 AGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
* * * *
3714539 ATGTGCATTTGG-AAAAAGGT-TCCAATCATGCCAATTAGATGAAAGGTTAAATATCTTTGAGTA
1 CTGTGCATTTGGCAGAAAGGTGT-CAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTA
* * * *
3714602 AAAGAATAAATGCCTAGCTGTGCATTTGGTAGAAATGGT-T-AATCATGCCA-TTAGATGAATGG
65 AAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAA-GGTGTCAATCATGCCAGTTAGATGAAAGG
* * *
3714664 TTAAATACCTTTGAGTAAAAGACTAAATGCCTAGCTT-TGTATTTTGCAGAAAGTTGTGCAATCA
128 TTAAATACCTTTGAGTAAAAGACTAAATGCCTAG-TTGTGCATTTGGCAGAAAGGTGT-CAATCA
* * * **
3714728 TGTCAGTTATATGAAAGGCTAAATACCTTTGAGTAAAAGACTAAATGAATAG
191 TGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
* * *
3714780 TTGTGCATTTGGCAGAAAGGTGTCAATAATGCCAGTTAGATGAAAGGTTAAATACCTATGAGTAA
1 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * * * * * * * *
3714845 AAGACTAAATGCATAGTTTTACATTTTGCAGAATGGTGTGAATC-TGTC-TTTAGATTAAAGGTT
66 AAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTT
* *
3714908 AAATACCTTTGAGTAAATGACTAAATGTCTA-TCTGTGCATTTGGCAGAAAGGT-TCTAATCATG
130 AAATACCTTTGAGTAAAAGACTAAATGCCTAGT-TGTGCATTTGGCAGAAAGGTGTC-AATCATG
* * *
3714971 CCAGTTAGATTAAAGGTTAAATACTTTTGAGTAAAAGATTAAATGCCTAG
193 CCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
** * * * ** *
3715021 CTGTTAATTTGACAAAAAGTTACCAATCATGCCAGTTAGATGAAAGGTTAAATAACTTTGAGTAA
1 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * * *
3715086 AAGTCTAAATGACTAGTTGTGCTTTTGGCAGAAAAGTGTCAATCATGCCAGTTAGATGAAAGGTT
66 AAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTT
* * * * *
3715151 AAATACCTTTGAGTAAAAGACTAAATGTCTAGTTGTGCATTTGGTAAAAAGGTGTCAATCAAGCT
130 AAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCC
* * * *
3715216 AGTTATATGAAAGGTTAAATACCTTTGTGTAGAAGACTAAAT-CACTAT
195 AGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGC-CTAG
* * * * * * *
3715264 ATGTACATTTGGTACAAAGGTGCCAATCATGCCAGTTAGATGAAAGATTAAATAACTTTGAGTAA
1 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
** *
3715329 AAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTACCAATCTTGCCAGTTAGATGAAAGGTT
66 AAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTT
* *
3715394 AAATACCTTTGAGTAAAAGACTAAATGCCTAGCTGTGCATTTGGCAGAAAGGTATCAATCATGCC
130 AAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCC
3715459 AGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
195 AGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
* * * *
3715507 ATGTGCATTGGGCAGAAAGGT-TCCAATCATGCCAGTTAGATGAAAGTTTAAATGCCTTTGAGTA
1 CTGTGCATTTGGCAGAAAGGTGT-CAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTA
* * * * *
3715571 AAAGACTAAATGACTAGTTGTGCATTTGGTAGAAATGTG-CAATCATGCTAGTTATATGAAAGGT
65 AAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGT
* * * * * * *
3715635 TAAATACCTTTGTGTAGAAGACTAAATGACTAGATGTGCATTTGTCAAAAAGGTGCCAATCATGC
129 TAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGC
* * * *
3715700 CAGTTAGATGAAAGGATAAATAACTTTGAGTAAAAGACTAATTTCCTAG
194 CAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
* * * * * * **
3715749 ATGTGCATTTGGTAGAAAGGTTTCAGTCATTCCAATTAGATGAAACCTTAAATACCTTTGAGTAA
1 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * ** *
3715814 AAGACTAAATGCCCAGCTAGATGCATTTGATAGAAATGGTGCCAATCATGCCAGTTAGATGAAAG
66 AAGACTAAATGCCTA--TTG-TGCATTTGGCAGAAA-GGTGTCAATCATGCCAGTTAGATGAAAG
* * * * *
3715879 GTTAAATA-CTTTGAGTAAAAGACTAAATGCCTAGCTGTGCATTTTGCAGAAA-TTTTTAATCAT
127 GTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCAT
3715942 GCCAGATT--ATGAAAGGCTTAAATACCTTTGAGTAAAAGACTAAATG-C-AG
192 GCCAG-TTAGATGAAAGG-TTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
3715991 CTTGTGCATTTGGCAGAAA--TGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTA
1 C-TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTA
* * * ** *
3716054 AAAGACT-AAT-CC-AGTTGT--ATTTTGCAG-AA-TTGTGAATCATGCCTTTTAGATTAAAAGG
65 AAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGA-TGAAAGG
*
3716112 TTAAATACCTTTGAGTAAATGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATG
128 TTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATG
3716177 CCAGTTAGATGAAAGGTTTAAATA-CTTTGAGTAAAAGACTTAAATGCCTAG
193 CCAGTTAGATGAAAGG-TTAAATACCTTTGAGTAAAAGAC-TAAATGCCTAG
* *
3716228 CTGTGCATTTGG-A-AAAAG-GT-AATCATGCCAATTAGATGAAAGGTTAAATA-CTTTGAGTAA
1 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
* * *
3716288 AAGTCTAAATGCCTAGTTGTGCATTTGGCATAAAAGGTGTCAATCATGCCACTTAGATGAAA-GT
66 AAGACTAAATGCCTA-TTGTGCATTTGGCA-GAAAGGTGTCAATCATGCCAGTTAGATGAAAGGT
* * * **
3716352 TAAATA-CTTTGAGTAAAAGACTAAATGTCTAGTTGTGCATTTGGTAAAAAGGTAACAATCATGC
129 TAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGC
3716416 CAGTTAGATGAAAGGTTAAATACCTTTGAGT--AA-ACTAAAT-CACTAG
194 CAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGC-CTAG
* * *
3716462 TTGTGCATTTGGTA-AAATGTG-CAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
1 CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
** * *
3716525 AAGACTAAATGCCTAGCGTTGCATTTGGCA-AAAGGTGCCAATCTTGCCAGTTAGATGAAAGGTT
66 AAGACTAAATGCCTATTG-TGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTT
* *
3716589 AAATACCTTTGAGTAAAAGACTAAATGCCTAGCTGTGCATTTGGCAAAAAGGTGTGCCAATCATG
130 AAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGT--CAATCATG
* *
3716654 CCAGTTAGATGTATGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
193 CCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
*
3716704 ATGTTGCATTTGGCAGAAAGGT-TCCAATCATGTCCAGTTAGATGAAAGGTTAAATACCTTTGAG
1 CTG-TGCATTTGGCAGAAAGGTGT-CAATCATG-CCAGTTAGATGAAAGGTTAAATACCTTTGAG
* * *
3716768 TAAAAGACTAAATGCCTAGTGTGCATTTTGCAGAAAGGTGGCAATCATGCCAGTTAGATGAAAGG
63 TAAAAGACTAAATGCCTATTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGG
*
3716833 TTAAATACCTTTGAGTAAAAGACTAAATG-CTAGTTGTGCATTTTGCAGAAAGGT-T-AATCATG
128 TTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATG
3716895 CCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATG
193 CCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATG
3716940 AGTATTTTGC
Statistics
Matches: 13326, Mismatches: 1970, Indels: 909
0.82 0.12 0.06
Matches are distributed among these distances:
207 10 0.00
208 36 0.00
209 7 0.00
210 5 0.00
211 2 0.00
213 2 0.00
214 1 0.00
216 1 0.00
217 3 0.00
220 14 0.00
221 50 0.00
222 54 0.00
224 38 0.00
225 69 0.01
226 54 0.00
227 9 0.00
228 5 0.00
229 23 0.00
230 112 0.01
231 196 0.01
232 382 0.03
233 527 0.04
234 824 0.06
235 459 0.03
236 677 0.05
237 1141 0.09
238 581 0.04
239 594 0.04
240 881 0.07
241 1084 0.08
242 1379 0.10
243 3789 0.28
244 96 0.01
245 82 0.01
246 139 0.01
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.30
Consensus pattern (242 bp):
CTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
AAGACTAAATGCCTATTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTA
AATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCA
GTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG
Found at i:3713577 original size:66 final size:67
Alignment explanation
Indices: 3713492--3713621 Score: 194
Period size: 66 Copynumber: 2.0 Consensus size: 67
3713482 AATCATGCTT
*
3713492 GTTAGATGAAAGTTAAATACCTTTGAGTAAAAGACTAAATGC-ATAGTGTGTATTTGG-AGAAAG
1 GTTAGATGAAAGTTAAATACCTTTGAGTAAAAGACTAAATGCTAT-GTGTGCATTTGGCAGAAAG
3713555 CCA
65 CCA
* *
3713558 GTTAGATTAAAGGTT-AATACCTTTGAGTAAAAGACTAAATGCTATTTGTGCATTTGGCAGAAAG
1 GTTAGATGAAA-GTTAAATACCTTTGAGTAAAAGACTAAATGCTATGTGTGCATTTGGCAGAAAG
3713622 GTGTCAGTCA
Statistics
Matches: 58, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
66 47 0.81
67 11 0.19
ACGTcount: A:0.38, C:0.09, G:0.22, T:0.31
Consensus pattern (67 bp):
GTTAGATGAAAGTTAAATACCTTTGAGTAAAAGACTAAATGCTATGTGTGCATTTGGCAGAAAGC
CA
Found at i:3714850 original size:81 final size:81
Alignment explanation
Indices: 3713554--3716939 Score: 4097
Period size: 81 Copynumber: 42.6 Consensus size: 81
3713544 TTTGGAGAAA
* *
3713554 GCCAGTTAGATTAAAGGTT-AATACCTTTGAGTAAAAGACTAAATG-CTATTTGTGCATTTGGCA
1 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCA
*
3713617 GAAAGGTGTCAGTCAT
66 GAAAGGTGTCAATCAT
* * * *
3713633 GCCAGTTAGATGAAATGTCAAATACCTTTGAGTAAAAGACTAAAT-TCTAGTTGTGCATTTGGTA
1 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCA
* *
3713697 TAAAGGTGTCAATCAA
66 GAAAGGTGTCAATCAT
*
3713713 GCCAGTTAGAT-AAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGTATTT----
1 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCA
*
3713773 GAAATGTGT-AATCAT
66 GAAAGGTGTCAATCAT
* * *
3713788 -CCA-TTAGATGAAAGCTTAAATA-CTTT-AGTAAAAGATTAAATGCCTAGCTGTGCATTTGGCA
1 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCA
**
3713849 GAAATATGTCAATCAT
66 GAAAGGTGTCAATCAT
* * * * * *
3713865 GTCAGTTAGATGAAAGGTTAAATACCTTTGAATAAAAGA-TTAATACCTAGATGT--ATTTTGCA
1 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCA
3713927 GAAA-G-GT-AA-CAT
66 GAAAGGTGTCAATCAT
* * * * * * * *
3713939 GCCACTTACGATGAAA-G-TAAATACATTTCAGTAAAATACTAATTGCATAGTTATGCATTTGGA
1 GCCAGTTA-GATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGC
* * *
3714002 ATAAATGTGCCAATCAT
65 AGAAAGGTGTCAATCAT
* ** * * *
3714019 G-CAGTTATATGAAATTTTAAATACCTTTGAGTAAAATAATAAA-GCATAGTTGTGCATTTGGCA
1 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCA
3714082 GAAAGGTGT-AATCAT
66 GAAAGGTGTCAATCAT
* ***
3714097 GCCAGTTAGATTAAAGGTTAAATACCTTTGAGT-AAAGACTAAATGCCTAACCGTGCATTTGGCA
1 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCA
*
3714161 GAAAGGTGCCAATCAT
66 GAAAGGTGTCAATCAT
* * * * *
3714177 GCTAGTTAGATGAAAGGTTAAATATCTTTGAGTAAAAGACTAATTGTCTAGCTGTGCATTTGG-A
1 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCA
3714241 -AAAGGTGT-AATCAT
66 GAAAGGTGTCAATCAT
* * * * *
3714255 GCCAGTTAGATTAAAGGTTAAATAACTTTGAGTAAAAGTCTAAATGACTAGTT-TGCATTTAGCA
1 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCA
* *
3714319 TAAAGGTGCCAATCAT
66 GAAAGGTGTCAATCAT
* * * *
3714335 GCCAGTTAGATGAAATGTTAAATACCTTGGAGTAAAAGACTAAATGACTAGTTGTGCATTTGGTA
1 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCA
* *
3714400 GAAAGGTGCCAAGCAT
66 GAAAGGTGTCAATCAT
* * *
3714416 ---AGTT--ATGAAAGGTTAAATACCTTTGTGCAAAAGACTAAATGACTA---GTGCATTTGGCA
1 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCA
* *
3714473 AAAAGGTGCCAATCAT
66 GAAAGGTGTCAATCAT
* *
3714489 GCCAGTTAGATGAAAGGTTAAATAAC-TTGAGTAAAAGACTAAATGCCTAGATGTGCATTTGG-A
1 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCA
*
3714552 AAAAGGT-TCCAATCAT
66 GAAAGGTGT-CAATCAT
* * * * *
3714568 GCCAATTAGATGAAAGGTTAAATATCTTTGAGTAAAAGAATAAATGCCTAGCTGTGCATTTGGTA
1 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCA
3714633 GAAATGGT-T-AATCAT
66 GAAA-GGTGTCAATCAT
* * *
3714648 GCCA-TTAGATGAATGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGCTT-TGTATTTTGC
1 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG-TTGTGCATTTGGC
*
3714711 AGAAAGTTGTGCAATCAT
65 AGAAAGGTGT-CAATCAT
* * * **
3714729 GTCAGTTATATGAAAGGCTAAATACCTTTGAGTAAAAGACTAAATGAATAGTTGTGCATTTGGCA
1 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCA
*
3714794 GAAAGGTGTCAATAAT
66 GAAAGGTGTCAATCAT
* * * * *
3714810 GCCAGTTAGATGAAAGGTTAAATACCTATGAGTAAAAGACTAAATGCATAGTTTTACATTTTGCA
1 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCA
* *
3714875 GAATGGTGTGAATC-T
66 GAAAGGTGTCAATCAT
* * * * *
3714890 GTC-TTTAGATTAAAGGTTAAATACCTTTGAGTAAATGACTAAATGTCTA-TCTGTGCATTTGGC
1 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGT-TGTGCATTTGGC
3714953 AGAAAGGT-TCTAATCAT
65 AGAAAGGTGTC-AATCAT
* * * * ** *
3714970 GCCAGTTAGATTAAAGGTTAAATACTTTTGAGTAAAAGATTAAATGCCTAGCTGTTAATTTGACA
1 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCA
* * **
3715035 AAAAGTTACCAATCAT
66 GAAAGGTGTCAATCAT
* * * *
3715051 GCCAGTTAGATGAAAGGTTAAATAACTTTGAGTAAAAGTCTAAATGACTAGTTGTGCTTTTGGCA
1 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCA
*
3715116 GAAAAGTGTCAATCAT
66 GAAAGGTGTCAATCAT
* *
3715132 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGTCTAGTTGTGCATTTGGTA
1 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCA
* *
3715197 AAAAGGTGTCAATCAA
66 GAAAGGTGTCAATCAT
* * * * *
3715213 GCTAGTTATATGAAAGGTTAAATACCTTTGTGTAGAAGACTAAAT-CACTA-TATGTACATTTGG
1 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGC-CTAGT-TGTGCATTTGG
* * *
3715276 TACAAAGGTGCCAATCAT
64 CAGAAAGGTGTCAATCAT
* *
3715294 GCCAGTTAGATGAAAGATTAAATAACTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCA
1 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCA
** *
3715359 GAAAGGTACCAATCTT
66 GAAAGGTGTCAATCAT
*
3715375 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGCTGTGCATTTGGCA
1 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCA
*
3715440 GAAAGGTATCAATCAT
66 GAAAGGTGTCAATCAT
* *
3715456 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGATGTGCATTGGGCA
1 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCA
3715521 GAAAGGT-TCCAATCAT
66 GAAAGGTGT-CAATCAT
* * * *
3715537 GCCAGTTAGATGAAAGTTTAAATGCCTTTGAGTAAAAGACTAAATGACTAGTTGTGCATTTGGTA
1 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCA
*
3715602 GAAATGTG-CAATCAT
66 GAAAGGTGTCAATCAT
* * * * * * *
3715617 GCTAGTTATATGAAAGGTTAAATACCTTTGTGTAGAAGACTAAATGACTAGATGTGCATTTGTCA
1 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCA
* *
3715682 AAAAGGTGCCAATCAT
66 GAAAGGTGTCAATCAT
* * * * * *
3715698 GCCAGTTAGATGAAAGGATAAATAACTTTGAGTAAAAGACTAATTTCCTAGATGTGCATTTGGTA
1 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCA
* *
3715763 GAAAGGTTTCAGTCAT
66 GAAAGGTGTCAATCAT
* * ** * * *
3715779 TCCAATTAGATGAAACCTTAAATACCTTTGAGTAAAAGACTAAATGCCCAGCTAGATGCATTTGA
1 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG-TTG-TGCATTTGG
* *
3715844 TAGAAATGGTGCCAATCAT
64 CAGAAA-GGTGTCAATCAT
* *
3715863 GCCAGTTAGATGAAAGGTTAAATA-CTTTGAGTAAAAGACTAAATGCCTAGCTGTGCATTTTGCA
1 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCA
* * *
3715927 GAAA-TTTTTAATCAT
66 GAAAGGTGTCAATCAT
3715942 GCCAGATT--ATGAAAGGCTTAAATACCTTTGAGTAAAAGACTAAATG-C-AGCTTGTGCATTTG
1 GCCAG-TTAGATGAAAGG-TTAAATACCTTTGAGTAAAAGACTAAATGCCTAG-TTGTGCATTTG
3716003 GCAGAAA--TGTCAATCAT
63 GCAGAAAGGTGTCAATCAT
*
3716020 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACT-AAT-CC-AGTTGT--ATTTTGCA
1 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCA
* *
3716080 G-AA-TTGTGAATCAT
66 GAAAGGTGTCAATCAT
** * *
3716094 GCCTTTTAGATTAAAAGGTTAAATACCTTTGAGTAAATGACTAAATGCCTAGTTGTGCATTTGGC
1 GCCAGTTAGA-TGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGC
3716159 AGAAAGGTGTCAATCAT
65 AGAAAGGTGTCAATCAT
*
3716176 GCCAGTTAGATGAAAGGTTTAAATA-CTTTGAGTAAAAGACTTAAATGCCTAGCTGTGCATTTGG
1 GCCAGTTAGATGAAAGG-TTAAATACCTTTGAGTAAAAGAC-TAAATGCCTAGTTGTGCATTTGG
*
3716240 -A-AAAAG-GT-AATCAT
64 CAGAAAGGTGTCAATCAT
* *
3716254 GCCAATTAGATGAAAGGTTAAATA-CTTTGAGTAAAAGTCTAAATGCCTAGTTGTGCATTTGGCA
1 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCA
*
3716318 TAAAAGGTGTCAATCAT
66 -GAAAGGTGTCAATCAT
* * *
3716335 GCCACTTAGATGAAA-GTTAAATA-CTTTGAGTAAAAGACTAAATGTCTAGTTGTGCATTTGGTA
1 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCA
* **
3716398 AAAAGGTAACAATCAT
66 GAAAGGTGTCAATCAT
*
3716414 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGT--AA-ACTAAAT-CACTAGTTGTGCATTTGGT
1 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGC-CTAGTTGTGCATTTGGC
*
3716475 A-AAATGTG-CAATCAT
65 AGAAAGGTGTCAATCAT
*
3716490 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG-CGTTGCATTTGGC
1 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTG-TGCATTTGGC
* *
3716554 A-AAAGGTGCCAATCTT
65 AGAAAGGTGTCAATCAT
*
3716570 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGCTGTGCATTTGGCA
1 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCA
*
3716635 AAAAGGTGTGCCAATCAT
66 GAAAGGTGT--CAATCAT
* * *
3716653 GCCAGTTAGATGTATGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGATGTTGCATTTGGC
1 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTG-TGCATTTGGC
3716718 AGAAAGGT-TCCAATCAT
65 AGAAAGGTGT-CAATCAT
*
3716735 GTCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG-TGTGCATTTTGC
1 G-CCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGC
*
3716799 AGAAAGGTGGCAATCAT
65 AGAAAGGTGTCAATCAT
*
3716816 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATG-CTAGTTGTGCATTTTGCA
1 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCA
3716880 GAAAGGT-T-AATCAT
66 GAAAGGTGTCAATCAT
3716894 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATG
1 GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATG
3716940 AGTATTTTGC
Statistics
Matches: 2876, Mismatches: 326, Indels: 211
0.84 0.10 0.06
Matches are distributed among these distances:
72 28 0.01
73 54 0.02
74 58 0.02
75 43 0.01
76 136 0.05
77 72 0.03
78 267 0.09
79 427 0.15
80 567 0.20
81 909 0.32
82 124 0.04
83 145 0.05
84 46 0.02
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.30
Consensus pattern (81 bp):
GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCA
GAAAGGTGTCAATCAT
Found at i:3717121 original size:45 final size:44
Alignment explanation
Indices: 3717036--3717160 Score: 163
Period size: 40 Copynumber: 2.9 Consensus size: 44
3717026 TTCTTTAGAG
* *
3717036 GTTAAATGAAATGCATAA-GGTGCATTATAGG-GATGAAAGGATAT
1 GTTAAATGAAATGTATAATGGTGCATTAAAGGTG-TG-AAGGATAT
3717080 GATTAAATGAAATGTATAATGGTGCATTAAAGGTGTGAAGGATAT
1 G-TTAAATGAAATGTATAATGGTGCATTAAAGGTGTGAAGGATAT
3717125 G----ATGAAATGTATAATGGTGCATTAAAGGTGTGAAGG
1 GTTAAATGAAATGTATAATGGTGCATTAAAGGTGTGAAGG
3717161 GATGCCATAA
Statistics
Matches: 76, Mismatches: 2, Indels: 10
0.86 0.02 0.11
Matches are distributed among these distances:
40 35 0.46
44 1 0.01
45 25 0.33
46 14 0.18
47 1 0.01
ACGTcount: A:0.39, C:0.03, G:0.29, T:0.29
Consensus pattern (44 bp):
GTTAAATGAAATGTATAATGGTGCATTAAAGGTGTGAAGGATAT
Found at i:3730046 original size:52 final size:52
Alignment explanation
Indices: 3730004--3730116 Score: 158
Period size: 52 Copynumber: 2.2 Consensus size: 52
3729994 TAATTATTAT
3730004 TTTTAATAAAAATCACT-ATTA-AATTATAATTCTATTAAAAATTAAATTAAA
1 TTTTAATAAAAATCA-TAATTATAATTATAATTCTATTAAAAATTAAATTAAA
* * * * *
3730055 TTTTAATTAAAATTATAATTATAATTATAATTCTATTACAAGTAAAATTAAA
1 TTTTAATAAAAATCATAATTATAATTATAATTCTATTAAAAATTAAATTAAA
3730107 TTTTAATAAA
1 TTTTAATAAA
3730117 TAGTTAATTT
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
50 1 0.02
51 17 0.31
52 36 0.67
ACGTcount: A:0.51, C:0.04, G:0.01, T:0.43
Consensus pattern (52 bp):
TTTTAATAAAAATCATAATTATAATTATAATTCTATTAAAAATTAAATTAAA
Found at i:3730047 original size:23 final size:23
Alignment explanation
Indices: 3730021--3730086 Score: 82
Period size: 23 Copynumber: 2.9 Consensus size: 23
3730011 AAAAATCACT
3730021 ATTAAATTATAATTCT-ATTAAAA
1 ATTAAATTATAATTCTAATT-AAA
*
3730044 ATTAAATTA-AATTTTAATTAAA
1 ATTAAATTATAATTCTAATTAAA
*
3730066 ATTATAATTATAATTATAATT
1 ATTA-AATTATAATTCTAATT
3730087 CTATTACAAG
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
22 12 0.32
23 17 0.45
24 9 0.24
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (23 bp):
ATTAAATTATAATTCTAATTAAA
Found at i:3730052 original size:12 final size:11
Alignment explanation
Indices: 3730021--3730108 Score: 52
Period size: 11 Copynumber: 7.7 Consensus size: 11
3730011 AAAAATCACT
*
3730021 ATTAAATTATA
1 ATTAAATTAAA
**
3730032 ATTCTATTAAAA
1 ATTAAATT-AAA
3730044 ATTAAATTAAA
1 ATTAAATTAAA
* *
3730055 TTTTAATTAAA
1 ATTAAATTAAA
*
3730066 ATTATAATTATA
1 ATTA-AATTAAA
**
3730078 ATTATAATT-CT
1 ATTA-AATTAAA
*
3730089 ATTACAAGTAAA
1 ATTA-AATTAAA
3730101 ATTAAATT
1 ATTAAATT
3730109 TTAATAAATA
Statistics
Matches: 57, Mismatches: 17, Indels: 6
0.71 0.21 0.08
Matches are distributed among these distances:
11 30 0.53
12 27 0.47
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.44
Consensus pattern (11 bp):
ATTAAATTAAA
Found at i:3730731 original size:86 final size:86
Alignment explanation
Indices: 3730618--3730788 Score: 279
Period size: 86 Copynumber: 2.0 Consensus size: 86
3730608 CTCAATTAGA
*
3730618 ATATTTATTAAACCCTTATGATCTTAATGGTAAACTACTCCATTGGTCACTCAACTTTTATGACA
1 ATATTTATTAAACCCTTATGATCTTAATGGTAAACTACTCAATTGGTCACTCAACTTTTATGACA
3730683 CTTTTATTTATTAATACTTTT
66 CTTTTATTTATTAATACTTTT
* * * * *
3730704 ATATTTATTAAACCCTTATGATTTTAATGTTGAACTACTCAATTGGTTACTCAACTTTTATGACT
1 ATATTTATTAAACCCTTATGATCTTAATGGTAAACTACTCAATTGGTCACTCAACTTTTATGACA
*
3730769 CTTTTATTTATTACTACTTT
66 CTTTTATTTATTAATACTTT
3730789 CTTTTGTATA
Statistics
Matches: 78, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
86 78 1.00
ACGTcount: A:0.29, C:0.16, G:0.07, T:0.47
Consensus pattern (86 bp):
ATATTTATTAAACCCTTATGATCTTAATGGTAAACTACTCAATTGGTCACTCAACTTTTATGACA
CTTTTATTTATTAATACTTTT
Found at i:3732498 original size:18 final size:16
Alignment explanation
Indices: 3732466--3732498 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
3732456 CATTGTAAGG
3732466 TAATTTTTTTAATATA
1 TAATTTTTTTAATATA
3732482 TAATATTTTTT-ATATA
1 TAAT-TTTTTTAATATA
3732498 T
1 T
3732499 GATTATTTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (16 bp):
TAATTTTTTTAATATA
Found at i:3736329 original size:2 final size:2
Alignment explanation
Indices: 3736322--3736357 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
3736312 CTAAGAAAAG
3736322 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3736358 TATTTTATTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:3749437 original size:106 final size:106
Alignment explanation
Indices: 3749310--3749823 Score: 467
Period size: 106 Copynumber: 4.9 Consensus size: 106
3749300 ATATCATGCC
* * * *
3749310 ACTCGAGACAACACAAGTTCAACTTCACAACGAAAGGACGGATGGTTGTCAACAAACAATTTACC
1 ACTCAAGACAACACAAGCTCAACTTCACAACGAAAGGACGGATGATTGTCAACAAACAATTTCCC
* *
3749375 AGTTTCAGAACCAATTTGAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAACCAATTTCAACTTCACAGCGAAGGATATTGG
* * ** * * * *
3749416 ATTCGAGACAACACAAATTCAACTTCATAAC-AAAGGGAC-GACTGGTTTTCAACAAACAACTTC
1 ACTCAAGACAACACAAGCTCAACTTCACAACGAAA-GGACGGA-TGATTGTCAACAAACAATTTC
*
3749479 CCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
64 CCAATTTCAGAACCAATTTCAACTTCACAGCGAAGGATATTGG
* * * * *
3749522 ACTCAAGACAGCACAAGCTCAACTTCACAGCG-AAGG--GGCTGACTGTCAACAAACAACTTCCC
1 ACTCAAGACAACACAAGCTCAACTTCACAACGAAAGGACGGATGATTGTCAACAAACAATTTCCC
** * * *
3749584 AATTTCATTACCAATTTTAACTTCCCAACGAAGGATATTGG
66 AATTTCAGAACCAATTTCAACTTCACAGCGAAGGATATTGG
* * * ** * *
3749625 ACCCAAGATAACACAAGCTCAACTTCACGACGAAAGGGTGGTTGATTGTCAA-TAA-AATTT--C
1 ACTCAAGACAACACAAGCTCAACTTCACAACGAAAGGACGGATGATTGTCAACAAACAATTTCCC
** ** *
3749686 -A-TTCAGAGTCAATTTCAACTTCACAATGAAGGATATTAG
66 AATTTCAGAACCAATTTCAACTTCACAGCGAAGGATATTGG
* * * ** * * * * *
3749725 ACTCTAGACAGCACAAGCTCAACTTCATAGTGAAGGGGCGGTTAACTGTCAACAAACAATTTCCC
1 ACTCAAGACAACACAAGCTCAACTTCACAACGAAAGGACGGATGATTGTCAACAAACAATTTCCC
** *
3749790 AGCTCCAGAACCAATTTCAACTTCAC-GACGAAGG
66 AATTTCAGAACCAATTTCAACTTCACAG-CGAAGG
3749824 GTAGTGGCCT
Statistics
Matches: 332, Mismatches: 62, Indels: 28
0.79 0.15 0.07
Matches are distributed among these distances:
100 70 0.21
101 3 0.01
102 6 0.02
103 82 0.25
104 10 0.03
105 9 0.03
106 152 0.46
ACGTcount: A:0.37, C:0.24, G:0.17, T:0.23
Consensus pattern (106 bp):
ACTCAAGACAACACAAGCTCAACTTCACAACGAAAGGACGGATGATTGTCAACAAACAATTTCCC
AATTTCAGAACCAATTTCAACTTCACAGCGAAGGATATTGG
Found at i:3750329 original size:11 final size:11
Alignment explanation
Indices: 3750300--3750339 Score: 57
Period size: 11 Copynumber: 3.8 Consensus size: 11
3750290 TTTCATAACC
3750300 ATATATTATAT
1 ATATATTATAT
3750311 -TATA-TATAT
1 ATATATTATAT
3750320 ATATATTATAT
1 ATATATTATAT
*
3750331 AAATATTAT
1 ATATATTAT
3750340 TATTTTATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
9 5 0.19
10 8 0.31
11 13 0.50
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (11 bp):
ATATATTATAT
Found at i:3751289 original size:13 final size:13
Alignment explanation
Indices: 3751271--3751296 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3751261 GTTTCGTTAT
3751271 GACACTTGATTTG
1 GACACTTGATTTG
3751284 GACACTTGATTTG
1 GACACTTGATTTG
3751297 TTTTCATTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.15, G:0.23, T:0.38
Consensus pattern (13 bp):
GACACTTGATTTG
Found at i:3751341 original size:23 final size:23
Alignment explanation
Indices: 3751279--3751346 Score: 65
Period size: 23 Copynumber: 3.2 Consensus size: 23
3751269 ATGACACTTG
3751279 ATTTGGACACTTGATTTGTTTTC
1 ATTTGGACACTTGATTTGTTTTC
* * * *
3751302 ATTT--TCA-AT--TTTCTTTTA
1 ATTTGGACACTTGATTTGTTTTC
3751320 ATTTGGACACTTGATTTGTTTTC
1 ATTTGGACACTTGATTTGTTTTC
3751343 ATTT
1 ATTT
3751347 TCAATTTAGT
Statistics
Matches: 32, Mismatches: 8, Indels: 10
0.64 0.16 0.20
Matches are distributed among these distances:
18 11 0.34
20 3 0.09
21 3 0.09
23 15 0.47
ACGTcount: A:0.19, C:0.12, G:0.12, T:0.57
Consensus pattern (23 bp):
ATTTGGACACTTGATTTGTTTTC
Found at i:3754078 original size:13 final size:13
Alignment explanation
Indices: 3754038--3754078 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
3754028 TAACTGCAAA
3754038 AAAATAATTAATAT
1 AAAATAATTAA-AT
*
3754052 AAAATAATTTAAT
1 AAAATAATTAAAT
*
3754065 AAAATACTTAAAT
1 AAAATAATTAAAT
3754078 A
1 A
3754079 TTAATTTATT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
13 14 0.58
14 10 0.42
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.34
Consensus pattern (13 bp):
AAAATAATTAAAT
Found at i:3754098 original size:10 final size:10
Alignment explanation
Indices: 3754080--3754109 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
3754070 ACTTAAATAT
*
3754080 TAATTTATTA
1 TAATATATTA
3754090 TAATATATTA
1 TAATATATTA
3754100 TAATATATTA
1 TAATATATTA
3754110 CCTTCTAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (10 bp):
TAATATATTA
Found at i:3754732 original size:53 final size:53
Alignment explanation
Indices: 3754641--3754761 Score: 172
Period size: 53 Copynumber: 2.3 Consensus size: 53
3754631 GGTGGGCACT
* * *
3754641 TGCCCACCCTGAAATCTGAATTTTCTTCGATTAGTTACTTATTTTACTG-ACAG
1 TGCCTACCCTGAAATCTGAATTTTCTTCAATTAATTACTTATTTTAC-GAACAG
* * *
3754694 TGTCTACCCTGAAATCTGAGTTTTCTTCAATTAATTACTTATTTTACGAACGG
1 TGCCTACCCTGAAATCTGAATTTTCTTCAATTAATTACTTATTTTACGAACAG
3754747 TGCCTACCCTGAAAT
1 TGCCTACCCTGAAAT
3754762 TTTATTTGTA
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
52 1 0.02
53 59 0.98
ACGTcount: A:0.26, C:0.22, G:0.13, T:0.39
Consensus pattern (53 bp):
TGCCTACCCTGAAATCTGAATTTTCTTCAATTAATTACTTATTTTACGAACAG
Found at i:3755355 original size:24 final size:23
Alignment explanation
Indices: 3755311--3755355 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
3755301 AGTGTATGAA
*
3755311 TTTATAATATTTATAAGTATAAT
1 TTTATAATATTTATAAATATAAT
*
3755334 TTTATAAATATTTTTAAATATA
1 TTTAT-AATATTTATAAATATA
3755356 TATGAATTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (23 bp):
TTTATAATATTTATAAATATAAT
Found at i:3757887 original size:13 final size:13
Alignment explanation
Indices: 3757869--3757910 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
3757859 CTATCCATTT
3757869 TTATTTATTATTA
1 TTATTTATTATTA
*
3757882 TTATTTA-T-TTG
1 TTATTTATTATTA
*
3757893 TTATATATTATTA
1 TTATTTATTATTA
3757906 TTATT
1 TTATT
3757911 GTCGTTTTAT
Statistics
Matches: 23, Mismatches: 4, Indels: 4
0.74 0.13 0.13
Matches are distributed among these distances:
11 8 0.35
12 2 0.09
13 13 0.57
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (13 bp):
TTATTTATTATTA
Found at i:3757896 original size:24 final size:23
Alignment explanation
Indices: 3757865--3757910 Score: 74
Period size: 24 Copynumber: 2.0 Consensus size: 23
3757855 TTTTCTATCC
*
3757865 ATTTTTATTTATTATTATTATTT
1 ATTTTTATATATTATTATTATTT
3757888 ATTTGTTATATATTATTATTATT
1 ATTT-TTATATATTATTATTATT
3757911 GTCGTTTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 4 0.19
24 17 0.81
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (23 bp):
ATTTTTATATATTATTATTATTT
Found at i:3757907 original size:17 final size:17
Alignment explanation
Indices: 3757868--3757904 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
3757858 TCTATCCATT
3757868 TTTATTTATTATTATTA
1 TTTATTTATTATTATTA
*
3757885 TTTATTTGTTATATATTA
1 TTTATTTATTAT-TATTA
3757903 TT
1 TT
3757905 ATTATTGTCG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (17 bp):
TTTATTTATTATTATTA
Found at i:3757920 original size:24 final size:23
Alignment explanation
Indices: 3757867--3757920 Score: 63
Period size: 24 Copynumber: 2.3 Consensus size: 23
3757857 TTCTATCCAT
* *
3757867 TTTTATTTATTATTATTATTTAT
1 TTTTATATATTATTATTATTTAG
*
3757890 TTGTTATATATTATTATTATTGTCG
1 TT-TTATATATTATTATTATT-TAG
3757915 TTTTAT
1 TTTTAT
3757921 TAATACAATT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
23 2 0.08
24 21 0.81
25 3 0.12
ACGTcount: A:0.24, C:0.02, G:0.06, T:0.69
Consensus pattern (23 bp):
TTTTATATATTATTATTATTTAG
Found at i:3771306 original size:20 final size:19
Alignment explanation
Indices: 3771278--3771338 Score: 83
Period size: 19 Copynumber: 3.3 Consensus size: 19
3771268 CATTACACTT
3771278 AAAAAAATGAAAAAATGAA
1 AAAAAAATGAAAAAATGAA
3771297 AAACAAAATG-AAAAATGAA
1 AAA-AAAATGAAAAAATGAA
3771316 AAAAAAA-GAAGAAAA-GAA
1 AAAAAAATGAA-AAAATGAA
3771334 AAAAA
1 AAAAA
3771339 TAAATAAAGG
Statistics
Matches: 39, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
17 1 0.03
18 13 0.33
19 19 0.49
20 6 0.15
ACGTcount: A:0.80, C:0.02, G:0.11, T:0.07
Consensus pattern (19 bp):
AAAAAAATGAAAAAATGAA
Found at i:3771312 original size:19 final size:18
Alignment explanation
Indices: 3771278--3771338 Score: 79
Period size: 18 Copynumber: 3.3 Consensus size: 18
3771268 CATTACACTT
3771278 AAAAAAATGAAAAAATGAA
1 AAAAAAATG-AAAAATGAA
3771297 AAACAAAATGAAAAATGAA
1 AAA-AAAATGAAAAATGAA
*
3771316 AAAAAAA-GAAGAAAAGAA
1 AAAAAAATGAA-AAATGAA
3771334 AAAAA
1 AAAAA
3771339 TAAATAAAGG
Statistics
Matches: 39, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
17 3 0.08
18 15 0.38
19 15 0.38
20 6 0.15
ACGTcount: A:0.80, C:0.02, G:0.11, T:0.07
Consensus pattern (18 bp):
AAAAAAATGAAAAATGAA
Found at i:3777606 original size:23 final size:23
Alignment explanation
Indices: 3777576--3777637 Score: 115
Period size: 23 Copynumber: 2.7 Consensus size: 23
3777566 CCCCCCATGA
3777576 GGGAACCGATTCCCCCTTTGAAG
1 GGGAACCGATTCCCCCTTTGAAG
3777599 GGGAACCGATTCCCCCTTTGAAG
1 GGGAACCGATTCCCCCTTTGAAG
*
3777622 GGGAATCGATTCCCCC
1 GGGAACCGATTCCCCC
3777638 CACAGGGGAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.21, C:0.32, G:0.26, T:0.21
Consensus pattern (23 bp):
GGGAACCGATTCCCCCTTTGAAG
Found at i:3787515 original size:54 final size:54
Alignment explanation
Indices: 3787452--3787562 Score: 222
Period size: 54 Copynumber: 2.1 Consensus size: 54
3787442 AGGCGAAGAC
3787452 GGAATGCTATCGAAAGACCGGAGGTTATTTTGAGTGTGGAGTTATTGATTACAA
1 GGAATGCTATCGAAAGACCGGAGGTTATTTTGAGTGTGGAGTTATTGATTACAA
3787506 GGAATGCTATCGAAAGACCGGAGGTTATTTTGAGTGTGGAGTTATTGATTACAA
1 GGAATGCTATCGAAAGACCGGAGGTTATTTTGAGTGTGGAGTTATTGATTACAA
3787560 GGA
1 GGA
3787563 CAAAGTTAAG
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 57 1.00
ACGTcount: A:0.30, C:0.09, G:0.31, T:0.31
Consensus pattern (54 bp):
GGAATGCTATCGAAAGACCGGAGGTTATTTTGAGTGTGGAGTTATTGATTACAA
Found at i:3788072 original size:27 final size:27
Alignment explanation
Indices: 3788040--3788091 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
3788030 ATAACGAGTT
3788040 TTATTAA-TAAAAATTATTTTTTTCAGA
1 TTATTAAGT-AAAATTATTTTTTTCAGA
* *
3788067 TTATTAAGTGAATTTATTTTTTTCA
1 TTATTAAGTAAAATTATTTTTTTCA
3788092 AAAACAAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.35, C:0.04, G:0.06, T:0.56
Consensus pattern (27 bp):
TTATTAAGTAAAATTATTTTTTTCAGA
Found at i:3795716 original size:6 final size:6
Alignment explanation
Indices: 3795681--3795715 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
3795671 TCCAAAAATA
*
3795681 CTCTCC CTCTCC CTCTCC CTCTCC CTCTCT CTCTC
1 CTCTCC CTCTCC CTCTCC CTCTCC CTCTCC CTCTC
3795716 TGCGAATTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.00, C:0.63, G:0.00, T:0.37
Consensus pattern (6 bp):
CTCTCC
Found at i:3797838 original size:26 final size:26
Alignment explanation
Indices: 3797789--3797841 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3797779 GGTCCTTGGG
* *
3797789 TTGGTTTGTTGGGTCATGCTTGCCAC
1 TTGGTTTGTTGGGTCAGGCCTGCCAC
*
3797815 TTGGTTTGTTGGGTCCGGCCTGCCAC
1 TTGGTTTGTTGGGTCAGGCCTGCCAC
3797841 T
1 T
3797842 ATGTTGGGCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.06, C:0.23, G:0.32, T:0.40
Consensus pattern (26 bp):
TTGGTTTGTTGGGTCAGGCCTGCCAC
Found at i:3797951 original size:25 final size:25
Alignment explanation
Indices: 3797894--3797943 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 25
3797884 AACCAAAATA
3797894 AATA-AAATAAAAAAAAATAATAAT
1 AATATAAATAAAAAAAAATAATAAT
3797918 AATAT-AATAAAAAAAAA-AAT-AT
1 AATATAAATAAAAAAAAATAATAAT
3797940 AATA
1 AATA
3797944 CCTAAATATT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.24
23 3 0.12
24 16 0.64
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (25 bp):
AATATAAATAAAAAAAAATAATAAT
Found at i:3798050 original size:38 final size:38
Alignment explanation
Indices: 3797995--3798156 Score: 184
Period size: 38 Copynumber: 4.2 Consensus size: 38
3797985 AAAATTATAA
* *
3797995 ATATATA-TTTCCAAAAATGTTTTTAAAAACTATATATT
1 ATATATATTTTTC-AAAATATTTTTAAAAACTATATATT
* *
3798033 ATATATATTTTTCAAAATGTTTTCAAAAACTATATATT
1 ATATATATTTTTCAAAATATTTTTAAAAACTATATATT
*
3798071 ATATACA-TTTTCAAAATATTTTTAAAAACTATATATT
1 ATATATATTTTTCAAAATATTTTTAAAAACTATATATT
* *** *
3798108 ATATATGTTCTGAAAAAAATATTTTTCAAAACTATATATT
1 ATATATATT-T-TTCAAAATATTTTTAAAAACTATATATT
3798148 ATATTATAT
1 ATA-TATAT
3798157 ATATATATAC
Statistics
Matches: 107, Mismatches: 12, Indels: 7
0.85 0.10 0.06
Matches are distributed among these distances:
37 33 0.31
38 38 0.36
39 5 0.05
40 27 0.25
41 4 0.04
ACGTcount: A:0.44, C:0.07, G:0.02, T:0.46
Consensus pattern (38 bp):
ATATATATTTTTCAAAATATTTTTAAAAACTATATATT
Found at i:3802330 original size:258 final size:256
Alignment explanation
Indices: 3801567--3802364 Score: 1162
Period size: 258 Copynumber: 3.1 Consensus size: 256
3801557 CAAAAATCAT
* * * * * * * *
3801567 GTGAAAACATTCTACCTGAAGGTCTTATAGATGGCCTGAAGGACTTATCATCTTTCTCAGAAGCT
1 GTGAAAACATCCTGCCCGGAGGTCTTATAGATGGCCCGGAGGACTTATCATCTTGCTCAGAAGCC
*
3801632 TGACAGATGACCCGAAAGATTTAATCATCATGCTCGGAAGGCTTACTGATGGCCCGAAGGACTTA
66 TGACAGATGACCCGAAGGATTTAATCATCATGCTCGGAAGGCTTACTGATGGCCC-AAGGA-TTA
* *
3801697 TCGATTTTGGAAATAATTTACTAGATAAGAAACTTTGGAAATCACTTTCTTACTTTTCAAAAATT
129 TCGATTTTGGAAATAATTTACTGGGTAAGAAACTTTGGAAATCACTTTCTTACTTTTCAAAAATT
*
3801762 TCATTTTCTGAAAACATTAAATGAGAAACTTTGGAAATCGCTTTCTCATTTTTTGAAAGTCAC
194 TCATTTTCTGAAAACATTAAATGAGAAACTTTGGAAATCACTTTCTCATTTTTTGAAAGTCAC
* * * * *
3801825 ATGAAAA-ATCCTGCCCCGAGGTCTTATAGATGACCCGGAGGACTTATCATCTTGCT-TGAATGT
1 GTGAAAACATCCTGCCCGGAGGTCTTATAGATGGCCCGGAGGACTTATCATCTTGCTCAGAA-GC
3801888 CTGACAGATGACCCGAAGGATTTAATCATCATGCTCGGAAGGCTTACTGATGGCCC---G---AT
65 CTGACAGATGACCCGAAGGATTTAATCATCATGCTCGGAAGGCTTACTGATGGCCCAAGGATTAT
*
3801947 CGATTTTGGAAATAATTTACTGGGTAAGAAACTTTGGAAATCGCTTTCTTACTTTTCAAAAATTT
130 CGATTTTGGAAATAATTTACTGGGTAAGAAACTTTGGAAATCACTTTCTTACTTTTCAAAAATTT
* *** * *
3802012 CATTTTCTGAAAACATTAAATGAGAAAATTCAAAAATCACTTTATCATTTTTTAAAAGTCAC
195 CATTTTCTGAAAACATTAAATGAGAAACTTTGGAAATCACTTTCTCATTTTTTGAAAGTCAC
* *
3802074 GTGAAAACATCCTGCCCGGAGGTCTTATAGATGGCCCGGAGGACTTATCATCTTGATCGGAAGCC
1 GTGAAAACATCCTGCCCGGAGGTCTTATAGATGGCCCGGAGGACTTATCATCTTGCTCAGAAGCC
** * *
3802139 TGACAGATGACTTGAAGGATTTAATTATCATGCTCAGAAGGCTTACTGATGGCCCAAAGGATTTA
66 TGACAGATGACCCGAAGGATTTAATCATCATGCTCGGAAGGCTTACTGATGGCCC-AAGGA-TTA
* * *
3802204 TCAATTTTGGAAATAATTTACTGGGTAAGAAACATTAGAAATCACTTTCTTACTTTTCAAAAATT
129 TCGATTTTGGAAATAATTTACTGGGTAAGAAACTTTGGAAATCACTTTCTTACTTTTCAAAAATT
** *
3802269 TCATTTTCAAAAAACATTAAATGAGAAACTTTGGAAATCACTTTCTCATTTTTTGAAAGTCAT
194 TCATTTTCTGAAAACATTAAATGAGAAACTTTGGAAATCACTTTCTCATTTTTTGAAAGTCAC
*
3802332 GTGAAAACATCCTGCCTGGAGGTCTTATAGATG
1 GTGAAAACATCCTGCCCGGAGGTCTTATAGATG
3802365 ACACATAGGA
Statistics
Matches: 481, Mismatches: 48, Indels: 22
0.87 0.09 0.04
Matches are distributed among these distances:
249 125 0.26
250 99 0.21
251 3 0.01
253 1 0.00
254 1 0.00
256 3 0.01
257 95 0.20
258 154 0.32
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Consensus pattern (256 bp):
GTGAAAACATCCTGCCCGGAGGTCTTATAGATGGCCCGGAGGACTTATCATCTTGCTCAGAAGCC
TGACAGATGACCCGAAGGATTTAATCATCATGCTCGGAAGGCTTACTGATGGCCCAAGGATTATC
GATTTTGGAAATAATTTACTGGGTAAGAAACTTTGGAAATCACTTTCTTACTTTTCAAAAATTTC
ATTTTCTGAAAACATTAAATGAGAAACTTTGGAAATCACTTTCTCATTTTTTGAAAGTCAC
Found at i:3802492 original size:114 final size:114
Alignment explanation
Indices: 3802292--3802542 Score: 405
Period size: 114 Copynumber: 2.2 Consensus size: 114
3802282 ACATTAAATG
*
3802292 AGAAACTTTGGAAATCACTTTCTCATTTTTTGAAAGTCATGTGAAAACATCCTGCCTGGAGGTCT
1 AGAAACTTTGGAAATCACTTTCTCATTTTTTGAAAGTCACGTGAAAACATCCTGCCTGGAGGTCT
* * *
3802357 TATAGATGACACATAGGACTTATCGATTTTGGAAATAATTTATTGGGTA
66 TATAGATGACACAGAGGACTTATCGATTTTGGAAATAATTTACTAGGTA
* *
3802406 AGAAACTTTGGAAATCGCTTTCTCATTTTTTGAAAGTCACGTGAAAAGATCCTGCC-GGAAGGTC
1 AGAAACTTTGGAAATCACTTTCTCATTTTTTGAAAGTCACGTGAAAACATCCTGCCTGG-AGGTC
* *
3802470 TTATAGATGGCCCAGAGGACTTATCGATTTTGGAAATAATTTACTAGGTA
65 TTATAGATGACACAGAGGACTTATCGATTTTGGAAATAATTTACTAGGTA
*
3802520 AGAAACTTTGTAAATCACTTTCT
1 AGAAACTTTGGAAATCACTTTCT
3802543 TACTTTTCAA
Statistics
Matches: 126, Mismatches: 10, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
113 2 0.02
114 124 0.98
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.34
Consensus pattern (114 bp):
AGAAACTTTGGAAATCACTTTCTCATTTTTTGAAAGTCACGTGAAAACATCCTGCCTGGAGGTCT
TATAGATGACACAGAGGACTTATCGATTTTGGAAATAATTTACTAGGTA
Found at i:3804787 original size:24 final size:23
Alignment explanation
Indices: 3804760--3804806 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
3804750 TTTTTCCTCT
3804760 TTTTCTTCATTTTT-CTTTTCTTTC
1 TTTTCTT--TTTTTCCTTTTCTTTC
3804784 TTTTCTTTTTTTCCCTTTTCTTT
1 TTTTCTTTTTTT-CCTTTTCTTT
3804807 TTACAAATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
22 5 0.24
24 16 0.76
ACGTcount: A:0.02, C:0.21, G:0.00, T:0.77
Consensus pattern (23 bp):
TTTTCTTTTTTTCCTTTTCTTTC
Found at i:3804808 original size:15 final size:13
Alignment explanation
Indices: 3804770--3804808 Score: 51
Period size: 15 Copynumber: 2.8 Consensus size: 13
3804760 TTTTCTTCAT
3804770 TTTTCTTTTCTTTC
1 TTTTCTTTT-TTTC
3804784 TTTTCTTTTTTTCCC
1 TTTTCTTTTTTT--C
3804799 TTTTCTTTTT
1 TTTTCTTTTT
3804809 ACAAATTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 3 0.13
14 9 0.39
15 11 0.48
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (13 bp):
TTTTCTTTTTTTC
Found at i:3805888 original size:65 final size:65
Alignment explanation
Indices: 3805819--3805965 Score: 178
Period size: 65 Copynumber: 2.3 Consensus size: 65
3805809 TGGAACACTT
3805819 AGTGCATCGATGCACTAAGG-GTGCATCGATGCATAAAATGCATTCGATGTTT-CA-AACAAGCC
1 AGTGCATCGATGCA-TAAGGTGTGCATCGATGCATAAAATGCATTCGATGTTTCCATAA-AAGCC
3805881 TGG
64 T-G
* * *
3805884 AGTGCATCAATG--TATGGTATGTGCATCGATGCATAAAATGCATTCGATGTTTCCATAAAATCC
1 AGTGCATCGATGCATAAGG--TGTGCATCGATGCATAAAATGCATTCGATGTTTCCATAAAAGCC
3805947 TG
64 TG
*
3805949 TGTGCATCGATGCATAA
1 AGTGCATCGATGCATAA
3805966 AATGCATTCG
Statistics
Matches: 69, Mismatches: 6, Indels: 12
0.79 0.07 0.14
Matches are distributed among these distances:
62 4 0.06
65 54 0.78
66 7 0.10
67 4 0.06
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (65 bp):
AGTGCATCGATGCATAAGGTGTGCATCGATGCATAAAATGCATTCGATGTTTCCATAAAAGCCTG
Found at i:3806615 original size:27 final size:27
Alignment explanation
Indices: 3806576--3806633 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
3806566 CTAAATGATG
* * *
3806576 CAAAAATCTAATAAACCAATATAAGTT
1 CAAAAACCAAATAAACAAATATAAGTT
* *
3806603 CAAAAACCAAATATATAAATATAAGTT
1 CAAAAACCAAATAAACAAATATAAGTT
3806630 CAAA
1 CAAA
3806634 TATTCAAAGT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.59, C:0.14, G:0.03, T:0.24
Consensus pattern (27 bp):
CAAAAACCAAATAAACAAATATAAGTT
Found at i:3808159 original size:20 final size:20
Alignment explanation
Indices: 3808134--3808194 Score: 79
Period size: 20 Copynumber: 3.0 Consensus size: 20
3808124 AGTTTTCATG
*
3808134 AAAACAAC-ACAATTGAATCA
1 AAAACAACTA-AATTAAATCA
*
3808154 AAAACATCTAAATTAAATCA
1 AAAACAACTAAATTAAATCA
*
3808174 AAAACATCTAAATTAAATCA
1 AAAACAACTAAATTAAATCA
3808194 A
1 A
3808195 TGATTTTCGA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
20 37 0.97
21 1 0.03
ACGTcount: A:0.61, C:0.16, G:0.02, T:0.21
Consensus pattern (20 bp):
AAAACAACTAAATTAAATCA
Found at i:3808689 original size:21 final size:21
Alignment explanation
Indices: 3808665--3808729 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 21
3808655 TTGGTGCACC
3808665 TTCATGGTGTATCGATGCATA
1 TTCATGGTGTATCGATGCATA
* **
3808686 TTCATAGGGATGCATCGATGCACC
1 TTCAT--GG-TGTATCGATGCATA
*
3808710 TTCATAGTGTATCGATGCAT
1 TTCATGGTGTATCGATGCAT
3808730 TATGCACAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
21 16 0.46
22 1 0.03
23 2 0.06
24 16 0.46
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.34
Consensus pattern (21 bp):
TTCATGGTGTATCGATGCATA
Found at i:3812557 original size:20 final size:21
Alignment explanation
Indices: 3812518--3812558 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
3812508 GAGATTATTT
3812518 TCATTTTTCAATTTTGAAATA
1 TCATTTTTCAATTTTGAAATA
3812539 TCATTTTT-ATATTTT-AAATA
1 TCATTTTTCA-ATTTTGAAATA
3812559 ATTTCTCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.34, C:0.07, G:0.02, T:0.56
Consensus pattern (21 bp):
TCATTTTTCAATTTTGAAATA
Found at i:3812956 original size:12 final size:12
Alignment explanation
Indices: 3812939--3812964 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
3812929 TGCCATTTCC
3812939 TCGTCATCTTCA
1 TCGTCATCTTCA
3812951 TCGTCATCTTCA
1 TCGTCATCTTCA
3812963 TC
1 TC
3812965 CGAATCACTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.35, G:0.08, T:0.42
Consensus pattern (12 bp):
TCGTCATCTTCA
Found at i:3824353 original size:9 final size:9
Alignment explanation
Indices: 3824305--3824360 Score: 53
Period size: 9 Copynumber: 6.3 Consensus size: 9
3824295 TAATTTAATC
3824305 TTAAAAT-A
1 TTAAAATAA
*
3824313 TAAAAATAA
1 TTAAAATAA
*
3824322 TCTAAACTAA
1 T-TAAAATAA
*
3824332 TTTAAATAA
1 TTAAAATAA
3824341 -TAAAATAA
1 TTAAAATAA
*
3824349 TTAAAAAAA
1 TTAAAATAA
3824358 TTA
1 TTA
3824361 CCTTGTCATT
Statistics
Matches: 38, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
8 13 0.34
9 18 0.47
10 7 0.18
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (9 bp):
TTAAAATAA
Found at i:3824862 original size:27 final size:26
Alignment explanation
Indices: 3824820--3824876 Score: 71
Period size: 27 Copynumber: 2.2 Consensus size: 26
3824810 TAGTTCTATG
3824820 AAATATTTTCTGTTTTTA-TTTTTAGA
1 AAATATTTTC-GTTTTTAGTTTTTAGA
* *
3824846 AAATAATTTTCATTTTTAGTTTTTTGA
1 AAAT-ATTTTCGTTTTTAGTTTTTAGA
3824873 AAAT
1 AAAT
3824877 TAGAAAACTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
26 10 0.37
27 17 0.63
ACGTcount: A:0.32, C:0.04, G:0.07, T:0.58
Consensus pattern (26 bp):
AAATATTTTCGTTTTTAGTTTTTAGA
Found at i:3825800 original size:16 final size:16
Alignment explanation
Indices: 3825781--3825814 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
3825771 TTAATTTAAA
*
3825781 TTTTTAGTATAACTTT
1 TTTTTAGTATAAATTT
*
3825797 TTTTTATTATAAATTT
1 TTTTTAGTATAAATTT
3825813 TT
1 TT
3825815 GATATTTTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.68
Consensus pattern (16 bp):
TTTTTAGTATAAATTT
Found at i:3827108 original size:47 final size:49
Alignment explanation
Indices: 3827026--3827123 Score: 139
Period size: 47 Copynumber: 2.0 Consensus size: 49
3827016 CACTTTTAGC
*
3827026 ATCAAACACTTTTGATTATGTTTAGAAATTCTGTTCGCAACACCAGTAT
1 ATCAAACACTTGTGATTATGTTTAGAAATTCTGTTCGCAACACCAGTAT
* *
3827075 ATCAAACACTTGTGA-TA-GTTTAGAAA-TCTTGTTCGCAAGACTAGTAT
1 ATCAAACACTTGTGATTATGTTTAGAAATTC-TGTTCGCAACACCAGTAT
3827122 AT
1 AT
3827124 AATTCAGAAT
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
46 2 0.04
47 27 0.60
48 2 0.04
49 14 0.31
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36
Consensus pattern (49 bp):
ATCAAACACTTGTGATTATGTTTAGAAATTCTGTTCGCAACACCAGTAT
Found at i:3830271 original size:21 final size:21
Alignment explanation
Indices: 3830225--3830273 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
3830215 AAGTTGAAGT
* * *
3830225 GAGAGAAGTAGAATGAGAAGC
1 GAGAGAAGTAGAAAGAAAAAC
*
3830246 AAGAGAAGTAGAAAGAAAAAC
1 GAGAGAAGTAGAAAGAAAAAC
3830267 GAGAGAA
1 GAGAGAA
3830274 ACAGAGAGGG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.57, C:0.04, G:0.33, T:0.06
Consensus pattern (21 bp):
GAGAGAAGTAGAAAGAAAAAC
Found at i:3830465 original size:28 final size:28
Alignment explanation
Indices: 3830425--3830482 Score: 80
Period size: 28 Copynumber: 2.1 Consensus size: 28
3830415 GTTGTTAAAC
* *
3830425 TATATTACATTTCACTTGAACGTTGAAT
1 TATATTACATTTCAATTAAACGTTGAAT
* *
3830453 TATATTATATTTCAATTAAATGTTGAAT
1 TATATTACATTTCAATTAAACGTTGAAT
3830481 TA
1 TA
3830483 CATCACTTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.36, C:0.09, G:0.09, T:0.47
Consensus pattern (28 bp):
TATATTACATTTCAATTAAACGTTGAAT
Found at i:3844691 original size:45 final size:44
Alignment explanation
Indices: 3844641--3844794 Score: 227
Period size: 44 Copynumber: 3.5 Consensus size: 44
3844631 TATGATATAT
3844641 GGTTATGGATAAATGGTAAGTGTATTGGTAAAAATAAGCTTACGA
1 GGTTATGGATAAATGGTAAGTGTATTGGT-AAAATAAGCTTACGA
* *
3844686 GGTTATGGATAAATGCTAATTGTATTGGTAAAATAAGCTTACGA
1 GGTTATGGATAAATGGTAAGTGTATTGGTAAAATAAGCTTACGA
* * *
3844730 GTTTATGGATAAATGGTAAATATATTGGTAAAATAAGCTTACGA
1 GGTTATGGATAAATGGTAAGTGTATTGGTAAAATAAGCTTACGA
* *
3844774 GCTTATGGGAAAAATGGTAAG
1 GGTTAT-GGATAAATGGTAAG
3844795 AAATTTTATT
Statistics
Matches: 99, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
44 60 0.61
45 39 0.39
ACGTcount: A:0.38, C:0.05, G:0.25, T:0.32
Consensus pattern (44 bp):
GGTTATGGATAAATGGTAAGTGTATTGGTAAAATAAGCTTACGA
Found at i:3844743 original size:24 final size:24
Alignment explanation
Indices: 3844672--3844743 Score: 59
Period size: 24 Copynumber: 3.2 Consensus size: 24
3844662 GTATTGGTAA
*
3844672 AAATAAGCTTACGAGGTTATGGAT
1 AAATAAGCTTACGAGTTTATGGAT
3844696 AAAT--GC-TA--A-TTGTATTGG-T
1 AAATAAGCTTACGAGTT-TA-TGGAT
3844715 AAAATAAGCTTACGAGTTTATGGAT
1 -AAATAAGCTTACGAGTTTATGGAT
3844740 AAAT
1 AAAT
3844744 GGTAAATATA
Statistics
Matches: 37, Mismatches: 1, Indels: 20
0.64 0.02 0.34
Matches are distributed among these distances:
18 1 0.03
19 4 0.11
20 7 0.19
21 2 0.05
22 4 0.11
23 2 0.05
24 11 0.30
25 4 0.11
26 2 0.05
ACGTcount: A:0.39, C:0.07, G:0.21, T:0.33
Consensus pattern (24 bp):
AAATAAGCTTACGAGTTTATGGAT
Found at i:3845904 original size:2 final size:2
Alignment explanation
Indices: 3845897--3845938 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
3845887 ACTTCTATAT
3845897 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
3845939 ACAAATCATA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:3847399 original size:95 final size:95
Alignment explanation
Indices: 3847293--3847496 Score: 223
Period size: 95 Copynumber: 2.1 Consensus size: 95
3847283 ATACCAACAA
* ** * * * *
3847293 GGTAGTATCGATGCCATGGTTAGGGCT-TCGATACCAGGCAACATCAAACCTAA-ATTTGGTATC
1 GGTAGTATCGATACCATAATAAGGG-TATCGAGACCAGGAAACATCAAACCTAATA-TTGATATC
*
3847356 GATACCGAAAGGGGGTATCAGTACTATAATAT
64 GATACCGAAAGGGGGTATCAGTACCATAATAT
* * * *
3847388 GGTAGTATCGATACCATAATAAGGGTATCGAGACCATGAAATATCGAATCTAATATTGATATCGA
1 GGTAGTATCGATACCATAATAAGGGTATCGAGACCAGGAAACATCAAACCTAATATTGATATCGA
* * * *
3847453 TACCGGAAGGGGGTTTCGGTACCATAGTAT
66 TACCGAAAGGGGGTATCAGTACCATAATAT
*
3847483 AGTAGTATCGATAC
1 GGTAGTATCGATAC
3847497 TATGGTAGGG
Statistics
Matches: 90, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
94 1 0.01
95 88 0.98
96 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.27
Consensus pattern (95 bp):
GGTAGTATCGATACCATAATAAGGGTATCGAGACCAGGAAACATCAAACCTAATATTGATATCGA
TACCGAAAGGGGGTATCAGTACCATAATAT
Found at i:3847919 original size:58 final size:58
Alignment explanation
Indices: 3847850--3848398 Score: 766
Period size: 58 Copynumber: 9.5 Consensus size: 58
3847840 TGCAAAAATG
3847850 TTAAGAAATTCATACTAAGTGGATGAATTTCTGTATGGGCACATTTTTATGTGTAAAC
1 TTAAGAAATTCATACTAAGTGGATGAATTTCTGTATGGGCACATTTTTATGTGTAAAC
* * *
3847908 TTAAGAAATTCATAGTAAGTGTATGAATTTCCGTATGGGCACATTTTTATGTGTAAAC
1 TTAAGAAATTCATACTAAGTGGATGAATTTCTGTATGGGCACATTTTTATGTGTAAAC
*
3847966 TTAAGAAATTCATACTAAGTGGATGAATTTTTGTATGGGCACATTTTTATGTGTAAAC
1 TTAAGAAATTCATACTAAGTGGATGAATTTCTGTATGGGCACATTTTTATGTGTAAAC
* * * * *
3848024 TTAAGAAATTCATATTAAGTGGATGAATTTCCGTATGTGCACAATTTTATGTGTAAAT
1 TTAAGAAATTCATACTAAGTGGATGAATTTCTGTATGGGCACATTTTTATGTGTAAAC
*
3848082 TTAAGAAATTCATACTAAGTGGATGAATTTTTGTATGGGCACATTTTTATGTGTAAAC
1 TTAAGAAATTCATACTAAGTGGATGAATTTCTGTATGGGCACATTTTTATGTGTAAAC
* * * *
3848140 TTAAGAAATTCATATTAAGTGGATGAATTTCTGTATGTGCGCATTTTTATGTGTAAAT
1 TTAAGAAATTCATACTAAGTGGATGAATTTCTGTATGGGCACATTTTTATGTGTAAAC
* * * * *
3848198 TTAAGAAATTCATACTAAGTAGATGAATTTCCGTATGTGCACATTTTAATTTGTAAAC
1 TTAAGAAATTCATACTAAGTGGATGAATTTCTGTATGGGCACATTTTTATGTGTAAAC
* * ** *
3848256 TTTAGAAATTCATATTAAGTGGATGAATTT-TCGTATAAGCACAATTTTATGTGTAAAC
1 TTAAGAAATTCATACTAAGTGGATGAATTTCT-GTATGGGCACATTTTTATGTGTAAAC
** * *
3848314 TTAAGAAATTCATACTGTGTGGATGAATTTATGTATGGGCAC---TTTATGTGCAAAAC
1 TTAAGAAATTCATACTAAGTGGATGAATTTCTGTATGGGCACATTTTTATGTG-TAAAC
* * *
3848370 -TAGGAAATTCATACTAAGTGTATAAATTT
1 TTAAGAAATTCATACTAAGTGGATGAATTT
3848399 TCGTAACGGT
Statistics
Matches: 436, Mismatches: 52, Indels: 9
0.88 0.10 0.02
Matches are distributed among these distances:
55 32 0.07
56 4 0.01
58 399 0.92
59 1 0.00
ACGTcount: A:0.34, C:0.09, G:0.18, T:0.39
Consensus pattern (58 bp):
TTAAGAAATTCATACTAAGTGGATGAATTTCTGTATGGGCACATTTTTATGTGTAAAC
Found at i:3849558 original size:20 final size:20
Alignment explanation
Indices: 3849533--3849606 Score: 87
Period size: 20 Copynumber: 3.7 Consensus size: 20
3849523 CAGTGAGTTT
*
3849533 GGGATCGATCATTTGGGAAA
1 GGGATCGATCCTTTGGGAAA
* * *
3849553 GGGATCAATCCTTTGTTG-AT
1 GGGATCGATCCTTTG-GGAAA
*
3849573 GGGATTGATCCTTTGGGAAA
1 GGGATCGATCCTTTGGGAAA
3849593 GGGATCGATCCTTT
1 GGGATCGATCCTTT
3849607 AGTTGAAGGG
Statistics
Matches: 43, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
19 1 0.02
20 41 0.95
21 1 0.02
ACGTcount: A:0.23, C:0.14, G:0.31, T:0.32
Consensus pattern (20 bp):
GGGATCGATCCTTTGGGAAA
Found at i:3849588 original size:40 final size:41
Alignment explanation
Indices: 3849532--3849627 Score: 140
Period size: 40 Copynumber: 2.4 Consensus size: 41
3849522 ACAGTGAGTT
* *
3849532 TGGGATCGATCATTTGGGAAAGGGATCAATCCTTT-GTTGA
1 TGGGATTGATCCTTTGGGAAAGGGATCAATCCTTTAGTTGA
*
3849572 TGGGATTGATCCTTTGGGAAAGGGATCGATCCTTTAGTTGA
1 TGGGATTGATCCTTTGGGAAAGGGATCAATCCTTTAGTTGA
* *
3849613 AGGGATTAATCCTTT
1 TGGGATTGATCCTTT
3849628 TTATGAAAAA
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
40 32 0.64
41 18 0.36
ACGTcount: A:0.24, C:0.12, G:0.29, T:0.34
Consensus pattern (41 bp):
TGGGATTGATCCTTTGGGAAAGGGATCAATCCTTTAGTTGA
Found at i:3851216 original size:20 final size:20
Alignment explanation
Indices: 3851191--3851264 Score: 87
Period size: 20 Copynumber: 3.7 Consensus size: 20
3851181 CAGTGAGTTT
*
3851191 GGGATCGATCATTTGGGAAA
1 GGGATCGATCCTTTGGGAAA
* * *
3851211 GGGATCAATCCTTTGTTG-AT
1 GGGATCGATCCTTTG-GGAAA
*
3851231 GGGATTGATCCTTTGGGAAA
1 GGGATCGATCCTTTGGGAAA
3851251 GGGATCGATCCTTT
1 GGGATCGATCCTTT
3851265 AGTTGAAGGG
Statistics
Matches: 43, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
19 1 0.02
20 41 0.95
21 1 0.02
ACGTcount: A:0.23, C:0.14, G:0.31, T:0.32
Consensus pattern (20 bp):
GGGATCGATCCTTTGGGAAA
Found at i:3851246 original size:40 final size:41
Alignment explanation
Indices: 3851190--3851285 Score: 140
Period size: 40 Copynumber: 2.4 Consensus size: 41
3851180 ACAGTGAGTT
* *
3851190 TGGGATCGATCATTTGGGAAAGGGATCAATCCTTT-GTTGA
1 TGGGATTGATCCTTTGGGAAAGGGATCAATCCTTTAGTTGA
*
3851230 TGGGATTGATCCTTTGGGAAAGGGATCGATCCTTTAGTTGA
1 TGGGATTGATCCTTTGGGAAAGGGATCAATCCTTTAGTTGA
* *
3851271 AGGGATTAATCCTTT
1 TGGGATTGATCCTTT
3851286 TTATGAAAAA
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
40 32 0.64
41 18 0.36
ACGTcount: A:0.24, C:0.12, G:0.29, T:0.34
Consensus pattern (41 bp):
TGGGATTGATCCTTTGGGAAAGGGATCAATCCTTTAGTTGA
Found at i:3851481 original size:20 final size:20
Alignment explanation
Indices: 3851456--3851528 Score: 78
Period size: 20 Copynumber: 3.7 Consensus size: 20
3851446 CAGTGAGTTT
*
3851456 GGGATCGATCATTTGGGAAA
1 GGGATCGATCCTTTGGGAAA
* *
3851476 GGGATCAATCCTTTGTTG--A
1 GGGATCGATCCTTTG-GGAAA
* *
3851495 TGGATTGATCCTTTGGGAAA
1 GGGATCGATCCTTTGGGAAA
3851515 GGGATCGATCCTTT
1 GGGATCGATCCTTT
3851529 AGTTGAAGGG
Statistics
Matches: 41, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
18 1 0.02
19 13 0.32
20 26 0.63
21 1 0.02
ACGTcount: A:0.23, C:0.14, G:0.30, T:0.33
Consensus pattern (20 bp):
GGGATCGATCCTTTGGGAAA
Found at i:3851526 original size:39 final size:41
Alignment explanation
Indices: 3851456--3851549 Score: 129
Period size: 39 Copynumber: 2.3 Consensus size: 41
3851446 CAGTGAGTTT
* *
3851456 GGGATCGATCATTTGGGAAAGGGATCAATCCTTT-GTTG-A
1 GGGATTGATCCTTTGGGAAAGGGATCAATCCTTTAGTTGAA
* *
3851495 TGGATTGATCCTTTGGGAAAGGGATCGATCCTTTAGTTGAA
1 GGGATTGATCCTTTGGGAAAGGGATCAATCCTTTAGTTGAA
*
3851536 GGGATTAATCCTTT
1 GGGATTGATCCTTT
3851550 TATGAAAATG
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
39 30 0.64
40 4 0.09
41 13 0.28
ACGTcount: A:0.24, C:0.13, G:0.29, T:0.34
Consensus pattern (41 bp):
GGGATTGATCCTTTGGGAAAGGGATCAATCCTTTAGTTGAA
Found at i:3870325 original size:20 final size:18
Alignment explanation
Indices: 3870295--3870360 Score: 69
Period size: 20 Copynumber: 3.4 Consensus size: 18
3870285 CGAGACTGAA
*
3870295 TGGTCTCTATATCGAAGCAT
1 TGGTATCTATA-CGAAG-AT
*
3870315 TGGTATATATACTGAAGGAT
1 TGGTATCTATAC-GAA-GAT
3870335 TGGTATCTATACGAAGAT
1 TGGTATCTATACGAAGAT
3870353 TGAGTATC
1 TG-GTATC
3870361 CATATCGAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
18 5 0.12
19 9 0.22
20 25 0.62
21 1 0.03
ACGTcount: A:0.30, C:0.12, G:0.23, T:0.35
Consensus pattern (18 bp):
TGGTATCTATACGAAGAT
Found at i:3888840 original size:19 final size:20
Alignment explanation
Indices: 3888795--3888847 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 20
3888785 AAACTTTAAG
*
3888795 GAAAGTTTCGAAACTATTGC
1 GAAAGTTTCAAAACTATTGC
*
3888815 GAAAGTTTCAAAACTCTTG-
1 GAAAGTTTCAAAACTATTGC
*
3888834 TAAAGTTTCAAAAC
1 GAAAGTTTCAAAAC
3888848 ATTAAAGCAT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 13 0.43
20 17 0.57
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.30
Consensus pattern (20 bp):
GAAAGTTTCAAAACTATTGC
Found at i:3892267 original size:17 final size:17
Alignment explanation
Indices: 3892245--3892279 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
3892235 AACGGTCAAC
3892245 GGTCAACGGTCGGGTCG
1 GGTCAACGGTCGGGTCG
* *
3892262 GGTCAACGTTTGGGTCG
1 GGTCAACGGTCGGGTCG
3892279 G
1 G
3892280 TCGGTCGGGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.11, C:0.20, G:0.46, T:0.23
Consensus pattern (17 bp):
GGTCAACGGTCGGGTCG
Found at i:3899425 original size:19 final size:19
Alignment explanation
Indices: 3899401--3899451 Score: 66
Period size: 19 Copynumber: 2.7 Consensus size: 19
3899391 CTTGCATAAG
*
3899401 AAGTTTCGAAACTATAGGA
1 AAGTTTCAAAACTATAGGA
* * *
3899420 AAGTTTCAAAACTCTTGTA
1 AAGTTTCAAAACTATAGGA
3899439 AAGTTTCAAAACT
1 AAGTTTCAAAACT
3899452 TTAAATCTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.31
Consensus pattern (19 bp):
AAGTTTCAAAACTATAGGA
Found at i:3899496 original size:20 final size:21
Alignment explanation
Indices: 3899471--3899510 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
3899461 AATGTACTGG
3899471 AAAGTTTCGAAAC-TCTTGTA
1 AAAGTTTCGAAACTTCTTGTA
*
3899491 AAAGTTTTGAAACTTCTTGT
1 AAAGTTTCGAAACTTCTTGT
3899511 CAAGCCTTGC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.40
Consensus pattern (21 bp):
AAAGTTTCGAAACTTCTTGTA
Found at i:3904344 original size:21 final size:21
Alignment explanation
Indices: 3904320--3904439 Score: 80
Period size: 23 Copynumber: 5.4 Consensus size: 21
3904310 ATTAATTACA
3904320 TTTATACATCCTTTCATGTCT
1 TTTATACATCCTTTCATGTCT
** * *
3904341 TTTATACATTATTATTCATTTCA
1 TTTATACA-TCCT-TTCATGTCT
*
3904364 TTTATGACATCATTTCATGTCT
1 TTTAT-ACATCCTTTCATGTCT
* * * *
3904386 TTTATATA-CTGTTATACATTTCA
1 TTTATACATC-CTT-T-CATGTCT
*
3904409 TTTATGACATCCTTTCATGCCT
1 TTTAT-ACATCCTTTCATGTCT
3904431 TTTATACAT
1 TTTATACAT
3904440 TATTATACAT
Statistics
Matches: 74, Mismatches: 17, Indels: 16
0.69 0.16 0.15
Matches are distributed among these distances:
20 1 0.01
21 16 0.22
22 24 0.32
23 25 0.34
24 7 0.09
25 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.05, T:0.52
Consensus pattern (21 bp):
TTTATACATCCTTTCATGTCT
Found at i:3904367 original size:23 final size:23
Alignment explanation
Indices: 3904332--3904458 Score: 73
Period size: 23 Copynumber: 5.6 Consensus size: 23
3904322 TATACATCCT
*
3904332 TTCATGTCTTTTATACATTATTA
1 TTCATGTCATTTATACATTATTA
* *
3904355 TTCATTTCATTTATGACATCA-T-
1 TTCATGTCATTTAT-ACATTATTA
* * * *
3904377 TTCATGTCTTTTATATACTGTTA
1 TTCATGTCATTTATACATTATTA
* * **
3904400 TACATTTCATTTATGACA-TCCT-
1 TTCATGTCATTTAT-ACATTATTA
* *
3904422 TTCATGCCTTTTATACATTATTA
1 TTCATGTCATTTATACATTATTA
* *
3904445 TACATTTCATTTAT
1 TTCATGTCATTTAT
3904459 GGCACCCTTT
Statistics
Matches: 73, Mismatches: 25, Indels: 12
0.66 0.23 0.11
Matches are distributed among these distances:
21 5 0.07
22 25 0.34
23 36 0.49
24 7 0.10
ACGTcount: A:0.26, C:0.17, G:0.05, T:0.53
Consensus pattern (23 bp):
TTCATGTCATTTATACATTATTA
Found at i:3904380 original size:45 final size:45
Alignment explanation
Indices: 3904318--3904471 Score: 229
Period size: 45 Copynumber: 3.4 Consensus size: 45
3904308 TTATTAATTA
*
3904318 CATTTAT-ACATCCTTTCATGTCTTTTATACATTATTATTCATTT
1 CATTTATGACATCCTTTCATGTCTTTTATACATTATTATACATTT
* * * *
3904362 CATTTATGACATCATTTCATGTCTTTTATATACTGTTATACATTT
1 CATTTATGACATCCTTTCATGTCTTTTATACATTATTATACATTT
*
3904407 CATTTATGACATCCTTTCATGCCTTTTATACATTATTATACATTT
1 CATTTATGACATCCTTTCATGTCTTTTATACATTATTATACATTT
* *
3904452 CATTTATGGCACCCTTTCAT
1 CATTTATGACATCCTTTCAT
3904472 TAATATGCAC
Statistics
Matches: 97, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
44 7 0.07
45 90 0.93
ACGTcount: A:0.25, C:0.19, G:0.05, T:0.50
Consensus pattern (45 bp):
CATTTATGACATCCTTTCATGTCTTTTATACATTATTATACATTT
Found at i:3904615 original size:54 final size:54
Alignment explanation
Indices: 3904557--3905128 Score: 541
Period size: 54 Copynumber: 10.8 Consensus size: 54
3904547 TGTACGGTTG
* * *
3904557 TTCATCTACAAATGATGAATTCTGTGAATTGCACACTTAGTGCCGAAATGATTA
1 TTCATCAACATATGATGAATTCTGTGAATTGCACACTTAGTGCCGAAACGATTA
* *
3904611 TTCATCAACATATGATGAATT-TCGTGAATTGCACATTTAGTGTCGAAACGATTA
1 TTCATCAACATATGATGAATTCT-GTGAATTGCACACTTAGTGCCGAAACGATTA
*** *
3904665 TTCATCAACATATGATGAATTCTGTGAATTGCACACTTAGTGATAAAACGATGA
1 TTCATCAACATATGATGAATTCTGTGAATTGCACACTTAGTGCCGAAACGATTA
* * * * *
3904719 TTCATCAACATACGATGAATTCCGTGAATTGCACACTTAGTGCAGAAACGGTGA
1 TTCATCAACATATGATGAATTCTGTGAATTGCACACTTAGTGCCGAAACGATTA
* * * *
3904773 TTCATCAACATATGATGAA-----T---TT---CA-TGAGTACCAAAATAG-TTA
1 TTCATCAACATATGATGAATTCTGTGAATTGCACACTTAGTGCCGAAA-CGATTA
* * * * * *
3904815 TTCATCGACATATGATAAATT-TCATGAATTGCACACTTAGTGTCGAAACGGTGA
1 TTCATCAACATATGATGAATTCT-GTGAATTGCACACTTAGTGCCGAAACGATTA
* * * *
3904869 TTCATCAACATGTGATGAATTCTGTGAATTTCACACTTAGTGTCGAAAC-AGTAA
1 TTCATCAACATATGATGAATTCTGTGAATTGCACACTTAGTGCCGAAACGA-TTA
* * *
3904923 TTCATCAACATATGATGAATTCCGTGAATTGCACACATAGTGCCGAAACGGTTA
1 TTCATCAACATATGATGAATTCTGTGAATTGCACACTTAGTGCCGAAACGATTA
* ***** *
3904977 TTCATCAACATATGATGAATT-TCGTGAATTGCAAACTTAACATAGAAA-TAGTTA
1 TTCATCAACATATGATGAATTCT-GTGAATTGCACACTTAGTGCCGAAACGA-TTA
* * * * *
3905031 TTCATCAATAAATGATGAATTCCGTGAATTGCACACTTAGTGCCGAAACAATGA
1 TTCATCAACATATGATGAATTCTGTGAATTGCACACTTAGTGCCGAAACGATTA
* * * *
3905085 TTCATCAACATATGATGAGTTCCGTGATTTGCACACTTTGTGCC
1 TTCATCAACATATGATGAATTCTGTGAATTGCACACTTAGTGCC
3905129 TATTTGGCAA
Statistics
Matches: 424, Mismatches: 71, Indels: 46
0.78 0.13 0.09
Matches are distributed among these distances:
42 27 0.06
43 3 0.01
46 2 0.00
47 1 0.00
49 1 0.00
50 2 0.00
53 4 0.01
54 381 0.90
55 3 0.01
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Consensus pattern (54 bp):
TTCATCAACATATGATGAATTCTGTGAATTGCACACTTAGTGCCGAAACGATTA
Found at i:3904688 original size:108 final size:108
Alignment explanation
Indices: 3904557--3905128 Score: 627
Period size: 108 Copynumber: 5.4 Consensus size: 108
3904547 TGTACGGTTG
* *
3904557 TTCATCTACAAATGATGAATTCTGTGAATTGCACACTTAGTGCCGAAAT-GATTATTCATCAACA
1 TTCATCAACATATGATGAATTCTGTGAATTGCACACTTAGTGCCGAAATAG-TTATTCATCAACA
* * * * *
3904621 TATGATGAATTTCGTGAATTGCACATTTAGTGTCGAAACGATTA
65 TATGATGAATTCCGTGAATTGCACACTTAGTGCCGAAACGGTGA
** *
3904665 TTCATCAACATATGATGAATTCTGTGAATTGCACACTTAGTG-ATAAA-ACGATGATTCATCAAC
1 TTCATCAACATATGATGAATTCTGTGAATTGCACACTTAGTGCCGAAATA-G-TTATTCATCAAC
* *
3904728 ATACGATGAATTCCGTGAATTGCACACTTAGTGCAGAAACGGTGA
64 ATATGATGAATTCCGTGAATTGCACACTTAGTGCCGAAACGGTGA
* * * *
3904773 TTCATCAACATATGATGAA-----T---TT---CA-TGAGTACCAAAATAGTTATTCATCGACAT
1 TTCATCAACATATGATGAATTCTGTGAATTGCACACTTAGTGCCGAAATAGTTATTCATCAACAT
* * * *
3904826 ATGATAAATTTCATGAATTGCACACTTAGTGTCGAAACGGTGA
66 ATGATGAATTCCGTGAATTGCACACTTAGTGCCGAAACGGTGA
* * * * *
3904869 TTCATCAACATGTGATGAATTCTGTGAATTTCACACTTAGTGTCGAAACAGTAATTCATCAACAT
1 TTCATCAACATATGATGAATTCTGTGAATTGCACACTTAGTGCCGAAATAGTTATTCATCAACAT
* *
3904934 ATGATGAATTCCGTGAATTGCACACATAGTGCCGAAACGGTTA
66 ATGATGAATTCCGTGAATTGCACACTTAGTGCCGAAACGGTGA
* ***** *
3904977 TTCATCAACATATGATGAATT-TCGTGAATTGCAAACTTAACATAGAAATAGTTATTCATCAATA
1 TTCATCAACATATGATGAATTCT-GTGAATTGCACACTTAGTGCCGAAATAGTTATTCATCAACA
* **
3905041 AATGATGAATTCCGTGAATTGCACACTTAGTGCCGAAACAATGA
65 TATGATGAATTCCGTGAATTGCACACTTAGTGCCGAAACGGTGA
* * * *
3905085 TTCATCAACATATGATGAGTTCCGTGATTTGCACACTTTGTGCC
1 TTCATCAACATATGATGAATTCTGTGAATTGCACACTTAGTGCC
3905129 TATTTGGCAA
Statistics
Matches: 383, Mismatches: 63, Indels: 36
0.79 0.13 0.07
Matches are distributed among these distances:
96 71 0.19
97 6 0.02
98 1 0.00
100 2 0.01
101 1 0.00
103 1 0.00
104 2 0.01
107 6 0.02
108 293 0.77
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Consensus pattern (108 bp):
TTCATCAACATATGATGAATTCTGTGAATTGCACACTTAGTGCCGAAATAGTTATTCATCAACAT
ATGATGAATTCCGTGAATTGCACACTTAGTGCCGAAACGGTGA
Found at i:3904933 original size:150 final size:150
Alignment explanation
Indices: 3904662--3905102 Score: 419
Period size: 150 Copynumber: 2.9 Consensus size: 150
3904652 GTCGAAACGA
* *
3904662 TTATTCATCAACATATGATGAATTCTGTGAATTGCACACTTAGTGATAAAACGATGATTCATCAA
1 TTATTCATCAACATATGATAAATTCTATGAATTGCACACTTAGTGATAAAACGATGATTCATCAA
* *
3904727 CATACGATGAATTCCGTGAATTGCACACTTAGTGCAGAAACGGTGATTCATCAACATATGATGAA
66 CATACGATGAATTCCGTGAATTGCACACTTAGTGCAGAAACAGTAATTCATCAACATATGATGAA
3904792 TTTCATGAGTACCAAAATAG
131 TTTCATGAGTACCAAAATAG
* * *
3904812 TTATTCATCGACATATGATAAATT-TCATGAATTGCACACTTAGTG-TCGAAACGGTGATTCATC
1 TTATTCATCAACATATGATAAATTCT-ATGAATTGCACACTTAGTGAT-AAAACGATGATTCATC
** * *
3904875 AACATGTGATGAATTCTGTGAATTTCACACTTAGTGTC-GAAACAGTAATTCATCAACATATGAT
64 AACATACGATGAATTCCGTGAATTGCACACTTAGTG-CAGAAACAGTAATTCATCAACATATGAT
* * *
3904939 GAATTCCGTGAATTGCACACATAGTGCCGAA-ACGG
128 GAATTTCATG-A--GTAC-CA-A------AATA--G
* * * ** * *
3904974 TTATTCATCAACATATGATGAATT-TCGTGAATTGCAAACTTA-ACATAGAAA-TAGTTATTCAT
1 TTATTCATCAACATATGATAAATTCT-ATGAATTGCACACTTAGTGATA-AAACGA-TGATTCAT
* * * * * *
3905036 CAATAAATGATGAATTCCGTGAATTGCACACTTAGTGCCGAAACAATGATTCATCAACATATGAT
63 CAACATACGATGAATTCCGTGAATTGCACACTTAGTGCAGAAACAGTAATTCATCAACATATGAT
3905101 GA
128 GA
3905103 GTTCCGTGAT
Statistics
Matches: 240, Mismatches: 31, Indels: 28
0.80 0.10 0.09
Matches are distributed among these distances:
149 2 0.01
150 118 0.49
151 2 0.01
153 3 0.01
154 2 0.01
155 1 0.00
160 1 0.00
161 3 0.01
162 108 0.45
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31
Consensus pattern (150 bp):
TTATTCATCAACATATGATAAATTCTATGAATTGCACACTTAGTGATAAAACGATGATTCATCAA
CATACGATGAATTCCGTGAATTGCACACTTAGTGCAGAAACAGTAATTCATCAACATATGATGAA
TTTCATGAGTACCAAAATAG
Found at i:3904958 original size:204 final size:204
Alignment explanation
Indices: 3904608--3905122 Score: 656
Period size: 204 Copynumber: 2.5 Consensus size: 204
3904598 GCCGAAATGA
* * * *
3904608 TTATTCATCAACATATGATGAATTTCGTGAATTGCACATTTAGTGTCGAAACGATTATTCATCAA
1 TTATTCATCAACATATGATAAATTTCATGAATTGCACACTTAGTGTCGAAACGATGATTCATCAA
*
3904673 CATATGATGAATTCTGTGAATTGCACACTTAGTGATAAAACGATGATTCATCAACATACGATGAA
66 CATATGATGAATTCTGTGAATTGCACACTTAGTGATAAAACGATAATTCATCAACATACGATGAA
*
3904738 TTCCGTGAATTGCACACTTAGTGCAGAAACGGTGATTCATCAACATATGATGAATTTCATGAGTA
131 TTCCGTGAATTGCACACATAGTGCAGAAACGGTGATTCATCAACATATGATGAATTTCATGAGTA
3904803 CCAAAATAG
196 CCAAAATAG
* *
3904812 TTATTCATCGACATATGATAAATTTCATGAATTGCACACTTAGTGTCGAAACGGTGATTCATCAA
1 TTATTCATCAACATATGATAAATTTCATGAATTGCACACTTAGTGTCGAAACGATGATTCATCAA
* * * *
3904877 CATGTGATGAATTCTGTGAATTTCACACTTAGTG-TCGAAAC-AGTAATTCATCAACATATGATG
66 CATATGATGAATTCTGTGAATTGCACACTTAGTGAT-AAAACGA-TAATTCATCAACATACGATG
* *
3904940 AATTCCGTGAATTGCACACATAGTGCCGAAACGGTTATTCATCAACATATGATGAATTTCGTGAA
129 AATTCCGTGAATTGCACACATAGTGCAGAAACGGTGATTCATCAACATATGATGAATTTC----A
* *
3905005 TTGCAAACTTAACATAGAAATAG
190 -TG---A-GT-AC-CA-AAATAG
* * * * * * *
3905028 TTATTCATCAATAAATGATGAATTCCGTGAATTGCACACTTAGTGCCGAAACAATGATTCATCAA
1 TTATTCATCAACATATGATAAATTTCATGAATTGCACACTTAGTGTCGAAACGATGATTCATCAA
* * *
3905093 CATATGATGAGTTCCGTGATTTGCACACTT
66 CATATGATGAATTCTGTGAATTGCACACTT
3905123 TGTGCCTATT
Statistics
Matches: 267, Mismatches: 30, Indels: 16
0.85 0.10 0.05
Matches are distributed among these distances:
203 2 0.01
204 170 0.64
208 1 0.00
209 2 0.01
212 1 0.00
213 1 0.00
214 2 0.01
215 1 0.00
216 87 0.33
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.32
Consensus pattern (204 bp):
TTATTCATCAACATATGATAAATTTCATGAATTGCACACTTAGTGTCGAAACGATGATTCATCAA
CATATGATGAATTCTGTGAATTGCACACTTAGTGATAAAACGATAATTCATCAACATACGATGAA
TTCCGTGAATTGCACACATAGTGCAGAAACGGTGATTCATCAACATATGATGAATTTCATGAGTA
CCAAAATAG
Found at i:3910926 original size:45 final size:45
Alignment explanation
Indices: 3910871--3911014 Score: 157
Period size: 45 Copynumber: 3.4 Consensus size: 45
3910861 TTTTAGGTTG
*
3910871 ATAATACACCCATATGCATTTCAACTTTGGCATCCTTTCATGCCA
1 ATAATGCACCCATATGCATTTCAACTTTGGCATCCTTTCATGCCA
* *
3910916 ATAATGCACCCATATGCA-TT--A--TT--C-T--TTT-ATGTCG
1 ATAATGCACCCATATGCATTTCAACTTTGGCATCCTTTCATGCCA
* **
3910950 ATAATGCACCCATATGCATTTCAGCTAAGGCATCCTTTCATGCCA
1 ATAATGCACCCATATGCATTTCAACTTTGGCATCCTTTCATGCCA
3910995 ATAATGCACCCATATGCATT
1 ATAATGCACCCATATGCATT
3911015 ATTATTTTAT
Statistics
Matches: 80, Mismatches: 8, Indels: 22
0.73 0.07 0.20
Matches are distributed among these distances:
34 22 0.28
35 5 0.06
37 1 0.01
38 1 0.01
40 2 0.03
41 1 0.01
42 2 0.03
44 5 0.06
45 41 0.51
ACGTcount: A:0.29, C:0.26, G:0.11, T:0.33
Consensus pattern (45 bp):
ATAATGCACCCATATGCATTTCAACTTTGGCATCCTTTCATGCCA
Found at i:3910991 original size:79 final size:79
Alignment explanation
Indices: 3910860--3911030 Score: 270
Period size: 79 Copynumber: 2.2 Consensus size: 79
3910850 TTATATCATA
* * **
3910860 CTTTTAGGTTGATAATACACCCATATGCATTTCAACTTTGGCATCCTTTCATGCCAATAATGCAC
1 CTTTTATGTCGATAATACACCCATATGCATTTCAACTAAGGCATCCTTTCATGCCAATAATGCAC
3910925 CCATATGCATTATT
66 CCATATGCATTATT
* *
3910939 CTTTTATGTCGATAATGCACCCATATGCATTTCAGCTAAGGCATCCTTTCATGCCAATAATGCAC
1 CTTTTATGTCGATAATACACCCATATGCATTTCAACTAAGGCATCCTTTCATGCCAATAATGCAC
3911004 CCATATGCATTATT
66 CCATATGCATTATT
* *
3911018 ATTTTATGCCGAT
1 CTTTTATGTCGAT
3911031 GTTGTTTTAG
Statistics
Matches: 84, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
79 84 1.00
ACGTcount: A:0.27, C:0.24, G:0.12, T:0.36
Consensus pattern (79 bp):
CTTTTATGTCGATAATACACCCATATGCATTTCAACTAAGGCATCCTTTCATGCCAATAATGCAC
CCATATGCATTATT
Found at i:3911577 original size:95 final size:95
Alignment explanation
Indices: 3911408--3911631 Score: 247
Period size: 95 Copynumber: 2.4 Consensus size: 95
3911398 ATGGCTCCAA
* * * * * * *
3911408 AGTATCGATACCACTACCCTGGTACCGATA-GATCTACACTATGCTACTGATACCCCCTTTCGGT
1 AGTATCGATACCATTACCATGGTATCGATACTA-CCATACTATGCTACCGATACCCCCTTTCGGT
* *
3911472 ATCGATACCAATATTAGGTTTGATGTTG-TCC
65 ATCGATACCAATATTAGATTCGATGTTGCT-C
* * * * * *
3911503 GGTATTGATACCCTTATCATGGTATCGATACTACCATACTATGGTACCGATACCCTC-TTCTGGT
1 AGTATCGATACCATTACCATGGTATCGATACTACCATACTATGCTACCGATACCCCCTTTC-GGT
* *
3911567 ATCGATACCAATTTTAGATTCGATGTTGCTT
65 ATCGATACCAATATTAGATTCGATGTTGCTC
3911598 AGTATCGATACCATTACCATGGTATCGATACTAC
1 AGTATCGATACCATTACCATGGTATCGATACTAC
3911632 ATCACCGATA
Statistics
Matches: 105, Mismatches: 21, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
94 3 0.03
95 100 0.95
96 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (95 bp):
AGTATCGATACCATTACCATGGTATCGATACTACCATACTATGCTACCGATACCCCCTTTCGGTA
TCGATACCAATATTAGATTCGATGTTGCTC
Found at i:3917546 original size:34 final size:34
Alignment explanation
Indices: 3917491--3917636 Score: 121
Period size: 34 Copynumber: 3.9 Consensus size: 34
3917481 AACTTCGGCA
*
3917491 TCTTTTCATGCCAATAATGCACCCATATGCATTAT
1 TCTTTT-ATGCCGATAATGCACCCATATGCATTAT
* *
3917526 TCTTTTATGCTGATAATGCACCCATATGTATTTCAGAT
1 TCTTTTATGCCGATAATGCACCCATATGCA-TT---AT
* * *
3917564 AAGGCATCCTTTCATGCCAATAATGCACCCATATGTATTAT
1 ------T-CTTTTATGCCGATAATGCACCCATATGCATTAT
*
3917605 TCTTTTATACCGATAATGCACCCATATGCATT
1 TCTTTTATGCCGATAATGCACCCATATGCATT
3917637 TCAGCTAAGG
Statistics
Matches: 90, Mismatches: 10, Indels: 23
0.73 0.08 0.19
Matches are distributed among these distances:
34 48 0.53
35 9 0.10
38 2 0.02
41 2 0.02
44 3 0.03
45 26 0.29
ACGTcount: A:0.29, C:0.23, G:0.11, T:0.37
Consensus pattern (34 bp):
TCTTTTATGCCGATAATGCACCCATATGCATTAT
Found at i:3917564 original size:24 final size:24
Alignment explanation
Indices: 3917537--3917602 Score: 59
Period size: 24 Copynumber: 2.9 Consensus size: 24
3917527 CTTTTATGCT
*
3917537 GATAATGCACCCATATGTATTTCA
1 GATAATGCACCCATATGTATTCCA
* * *
3917561 GATAAGGCATCC-T-T-TCATGCCA
1 GATAATGCACCCATATGT-ATTCCA
3917583 -ATAATGCACCCATATGTATT
1 GATAATGCACCCATATGTATT
3917603 ATTCTTTTAT
Statistics
Matches: 31, Mismatches: 7, Indels: 9
0.66 0.15 0.19
Matches are distributed among these distances:
21 10 0.32
22 6 0.19
23 4 0.13
24 11 0.35
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.32
Consensus pattern (24 bp):
GATAATGCACCCATATGTATTCCA
Found at i:3917579 original size:79 final size:78
Alignment explanation
Indices: 3917448--3917688 Score: 351
Period size: 79 Copynumber: 3.1 Consensus size: 78
3917438 TTATATCATA
* * ** *
3917448 CTTTTATGTTGATAATGCATCCATATGCATTTCA-ACTTCGGCATCTTTTCATGCCAATAATGCA
1 CTTTTATGCTGATAATGCACCCATATGCATTTCAGA-TAAGGCATCCTTTCATGCCAATAATGCA
3917512 CCCATATGCATTATT
65 CCCATATG-ATTATT
*
3917527 CTTTTATGCTGATAATGCACCCATATGTATTTCAGATAAGGCATCCTTTCATGCCAATAATGCAC
1 CTTTTATGCTGATAATGCACCCATATGCATTTCAGATAAGGCATCCTTTCATGCCAATAATGCAC
3917592 CCATATGTATTATT
66 CCATATG-ATTATT
* * * *
3917606 CTTTTATACCGATAATGCACCCATATGCATTTCAGCTAAGGCATTCTTTCATGCCAATAATGCAC
1 CTTTTATGCTGATAATGCACCCATATGCATTTCAGATAAGGCATCCTTTCATGCCAATAATGCAC
3917671 CCATAT-ATTATT
66 CCATATGATTATT
3917683 CTTTTA
1 CTTTTA
3917689 ATCATTTGTT
Statistics
Matches: 149, Mismatches: 12, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
77 12 0.08
79 136 0.91
80 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.11, T:0.38
Consensus pattern (78 bp):
CTTTTATGCTGATAATGCACCCATATGCATTTCAGATAAGGCATCCTTTCATGCCAATAATGCAC
CCATATGATTATT
Found at i:3917602 original size:45 final size:44
Alignment explanation
Indices: 3917538--3917676 Score: 145
Period size: 45 Copynumber: 3.3 Consensus size: 44
3917528 TTTTATGCTG
3917538 ATAATGCACCCATATGTATTTCAGATAAGGCATCCTTTCATGCCA
1 ATAATGCACCCATATGTATTTCAGATAAGGCAT-CTTTCATGCCA
* * *
3917583 ATAATGCACCCATATGTA-TT---AT------TCTTTTATACCG
1 ATAATGCACCCATATGTATTTCAGATAAGGCATCTTTCATGCCA
* *
3917617 ATAATGCACCCATATGCATTTCAGCTAAGGCATTCTTTCATGCCA
1 ATAATGCACCCATATGTATTTCAGATAAGGCA-TCTTTCATGCCA
3917662 ATAATGCACCCATAT
1 ATAATGCACCCATAT
3917677 ATTATTCTTT
Statistics
Matches: 75, Mismatches: 8, Indels: 22
0.71 0.08 0.21
Matches are distributed among these distances:
34 25 0.33
35 3 0.04
38 1 0.01
41 2 0.03
44 2 0.03
45 42 0.56
ACGTcount: A:0.31, C:0.24, G:0.12, T:0.33
Consensus pattern (44 bp):
ATAATGCACCCATATGTATTTCAGATAAGGCATCTTTCATGCCA
Found at i:3918215 original size:95 final size:95
Alignment explanation
Indices: 3918108--3918292 Score: 237
Period size: 95 Copynumber: 1.9 Consensus size: 95
3918098 ACTTCTATAT
* * * *
3918108 TATGGTATCGATACCCCCTTTCAGTAACAATATCAATATTAGGTTCGATGTTGCATGGTATCGAT
1 TATGGTACCGATACCCCCTTCCAGTAACAATACCAATATTAGATTCGATGTTGCATGGTATCGAT
3918173 ACCCTTACCAAT-GTATCAATACTACCATAC
66 ACCCTTACC-ATGGTATCAATACTACCATAC
* * *** * * *
3918203 TATGGTACCGATACCCTCTTCCGGTATTGATACCAGTTTTAGATTCGATGTTGCTTGGTATCGAT
1 TATGGTACCGATACCCCCTTCCAGTAACAATACCAATATTAGATTCGATGTTGCATGGTATCGAT
*
3918268 ACCCTTACCATGGTATCGATACTAC
66 ACCCTTACCATGGTATCAATACTAC
3918293 ATTGTCGGTA
Statistics
Matches: 76, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
94 2 0.03
95 74 0.97
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.34
Consensus pattern (95 bp):
TATGGTACCGATACCCCCTTCCAGTAACAATACCAATATTAGATTCGATGTTGCATGGTATCGAT
ACCCTTACCATGGTATCAATACTACCATAC
Found at i:3919348 original size:20 final size:20
Alignment explanation
Indices: 3919315--3919354 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
3919305 CTTGAAATTA
*
3919315 CTGTAGCAATATCGGTACCC
1 CTGTAGCAATATCGATACCC
3919335 CTGTAGCAGA-ATCGATACCC
1 CTGTAGCA-ATATCGATACCC
3919355 ATTTGCATTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 17 0.94
21 1 0.06
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.23
Consensus pattern (20 bp):
CTGTAGCAATATCGATACCC
Found at i:3919536 original size:36 final size:36
Alignment explanation
Indices: 3919495--3919564 Score: 122
Period size: 36 Copynumber: 1.9 Consensus size: 36
3919485 ATTATTTTTG
3919495 TAAACTTTGAAAACTTTGAATAAATTCAATTCAAAT
1 TAAACTTTGAAAACTTTGAATAAATTCAATTCAAAT
**
3919531 TAAACTTTGAATGCTTTGAATAAATTCAATTCAA
1 TAAACTTTGAAAACTTTGAATAAATTCAATTCAA
3919565 GATCCAAAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.44, C:0.11, G:0.07, T:0.37
Consensus pattern (36 bp):
TAAACTTTGAAAACTTTGAATAAATTCAATTCAAAT
Found at i:3919719 original size:21 final size:19
Alignment explanation
Indices: 3919690--3919746 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 19
3919680 ATATTTAATG
3919690 AAAAAGATAACAATTGTTT
1 AAAAAGATAACAATTGTTT
3919709 ACAAAAGGAT-ACTAATTG-TT
1 A-AAAA-GATAAC-AATTGTTT
*
3919729 AAAAAGATACCAATTGTT
1 AAAAAGATAACAATTGTT
3919747 GGAAAATATA
Statistics
Matches: 32, Mismatches: 1, Indels: 10
0.74 0.02 0.23
Matches are distributed among these distances:
18 8 0.25
19 7 0.22
20 9 0.28
21 8 0.25
ACGTcount: A:0.49, C:0.09, G:0.12, T:0.30
Consensus pattern (19 bp):
AAAAAGATAACAATTGTTT
Found at i:3919737 original size:18 final size:17
Alignment explanation
Indices: 3919690--3919746 Score: 60
Period size: 18 Copynumber: 3.0 Consensus size: 17
3919680 ATATTTAATG
3919690 AAAAAGATAACAATTGTTT
1 AAAAAGAT-ACAATTG-TT
3919709 ACAAAAGGATACTAATTGTT
1 A-AAAA-GATAC-AATTGTT
3919729 AAAAAGATACCAATTGTT
1 AAAAAGATA-CAATTGTT
3919747 GGAAAATATA
Statistics
Matches: 34, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
18 11 0.32
19 6 0.18
20 9 0.26
21 8 0.24
ACGTcount: A:0.49, C:0.09, G:0.12, T:0.30
Consensus pattern (17 bp):
AAAAAGATACAATTGTT
Found at i:3922256 original size:21 final size:21
Alignment explanation
Indices: 3922232--3922290 Score: 61
Period size: 19 Copynumber: 3.0 Consensus size: 21
3922222 GTTCACACAA
*
3922232 TATCAATACTATTTTATAAAG
1 TATCAATACTATTTCATAAAG
** *
3922253 TATCGGTACTA-TTCATACAG
1 TATCAATACTATTTCATAAAG
3922273 TA-CAATACTA-TTCATAAA
1 TATCAATACTATTTCATAAA
3922291 AACATTTTTG
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
19 13 0.42
20 9 0.29
21 9 0.29
ACGTcount: A:0.41, C:0.15, G:0.07, T:0.37
Consensus pattern (21 bp):
TATCAATACTATTTCATAAAG
Found at i:3922395 original size:35 final size:36
Alignment explanation
Indices: 3922340--3922410 Score: 126
Period size: 35 Copynumber: 2.0 Consensus size: 36
3922330 ATTATTTTTG
3922340 TAAACTTTGAAAACTTTGAATAAATTCAATTCAAGT
1 TAAACTTTGAAAACTTTGAATAAATTCAATTCAAGT
*
3922376 TAAACTTT-AAAGCTTTGAATAAATTCAATTCAAGT
1 TAAACTTTGAAAACTTTGAATAAATTCAATTCAAGT
3922411 CCCAAAACAT
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
35 26 0.76
36 8 0.24
ACGTcount: A:0.44, C:0.11, G:0.08, T:0.37
Consensus pattern (36 bp):
TAAACTTTGAAAACTTTGAATAAATTCAATTCAAGT
Found at i:3928150 original size:64 final size:64
Alignment explanation
Indices: 3928097--3928259 Score: 211
Period size: 65 Copynumber: 2.5 Consensus size: 64
3928087 CGGTGCACCA
* *
3928097 AGTGTGCATCGATGCATTAAATGCATTCGATGTTTGAAAAATAGCCTG-GTGCATCGATGCATGG
1 AGTGTGCATCGATGCATCAAATGCATTCGATGTTTG-AAAATAGCCAGAGTGCATCGATGCATGG
** **
3928161 CTTGTGCATCGATGCATCAAATGCATTCGATGTTTTGAAAATATTCAGAGTGCATCGATGCATGG
1 AGTGTGCATCGATGCATCAAATGCATTCGATG-TTTGAAAATAGCCAGAGTGCATCGATGCATGG
* * **
3928226 AGAGTGCATCGGTGCATGGAATGCATTCGATGTT
1 AGTGTGCATCGATGCATCAAATGCATTCGATGTT
3928260 CAATTAATTC
Statistics
Matches: 85, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
64 39 0.46
65 46 0.54
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (64 bp):
AGTGTGCATCGATGCATCAAATGCATTCGATGTTTGAAAATAGCCAGAGTGCATCGATGCATGG
Found at i:3928231 original size:19 final size:19
Alignment explanation
Indices: 3928207--3928257 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
3928197 GAAAATATTC
3928207 AGAGTGCATCGATGCATGG
1 AGAGTGCATCGATGCATGG
*
3928226 AGAGTGCATCGGTGCATGG
1 AGAGTGCATCGATGCATGG
3928245 A-A-TGCATTCGATG
1 AGAGTGCA-TCGATG
3928258 TTCAATTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 4 0.14
18 6 0.21
19 19 0.66
ACGTcount: A:0.25, C:0.16, G:0.35, T:0.24
Consensus pattern (19 bp):
AGAGTGCATCGATGCATGG
Found at i:3928299 original size:65 final size:65
Alignment explanation
Indices: 3928101--3928308 Score: 189
Period size: 65 Copynumber: 3.2 Consensus size: 65
3928091 GCACCAAGTG
* * * ** *
3928101 TGCATCGATGCATTAAATGCATTCGATGTTTGAAAAATAGCCTG-GTGCATCGATGCATGG-CTT
1 TGCATCGGTGCATGAAATGCATTCGATGTTT-CAAAATATTCAGAGTGCATCGATGCATGGAC-T
3928164 G-
64 GA
* * *
3928165 TGCATCGATGCATCAAATGCATTCGATGTTTTGAAAATATTCAGAGTGCATCGATGCATGGA--G
1 TGCATCGGTGCATGAAATGCATTCGATG-TTTCAAAATATTCAGAGTGCATCGATGCATGGACTG
3928228 A
65 A
* *
3928229 GTGCATCGGTGCATGGAATGCATTCGATG-TTC-AATTAATTCATCGA-TGCATCGATGCATGGA
1 -TGCATCGGTGCATGAAATGCATTCGATGTTTCAAAAT-ATTCA--GAGTGCATCGATGCATGGA
3928291 CTGA
62 CTGA
*
3928295 TGCATCGGTCCATG
1 TGCATCGGTGCATG
3928309 CCTTTGAATA
Statistics
Matches: 123, Mismatches: 11, Indels: 19
0.80 0.07 0.12
Matches are distributed among these distances:
62 3 0.02
63 8 0.07
64 51 0.41
65 59 0.48
66 2 0.02
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (65 bp):
TGCATCGGTGCATGAAATGCATTCGATGTTTCAAAATATTCAGAGTGCATCGATGCATGGACTGA
Found at i:3928944 original size:17 final size:17
Alignment explanation
Indices: 3928922--3928965 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
3928912 AATAGTCAAG
*
3928922 CATCCAAATATCAGAAA
1 CATCCAAATAACAGAAA
* *
3928939 CATCCAAACAAACATAAA
1 CATCCAAA-TAACAGAAA
3928957 CATCCAAAT
1 CATCCAAAT
3928966 CAAAAAGTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
17 8 0.36
18 14 0.64
ACGTcount: A:0.55, C:0.27, G:0.02, T:0.16
Consensus pattern (17 bp):
CATCCAAATAACAGAAA
Found at i:3934740 original size:22 final size:21
Alignment explanation
Indices: 3934698--3934737 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
3934688 GAGTTTGTTT
*
3934698 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
3934719 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
3934738 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:3936750 original size:64 final size:65
Alignment explanation
Indices: 3936682--3936808 Score: 186
Period size: 64 Copynumber: 2.0 Consensus size: 65
3936672 GTGCACCAAG
* *
3936682 TGTGCATCGATGCATTAAATGCATTCGATG-TTTGAAAAATAGCCTG-GTGCATCGATGCATGGC
1 TGTGCATCGATGCATCAAATGCATTCGATGTTTTG-AAAATAGCCAGAGTGCATCGATGCATGGC
3936745 T
65 T
* **
3936746 TGTGCATCGATGCATCAAATGCATTCGGTGTTTTGAAAATATTCAGAGTGCATCGATGCATGG
1 TGTGCATCGATGCATCAAATGCATTCGATGTTTTGAAAATAGCCAGAGTGCATCGATGCATGG
3936809 AGAGTGCATC
Statistics
Matches: 56, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
64 36 0.64
65 20 0.36
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (65 bp):
TGTGCATCGATGCATCAAATGCATTCGATGTTTTGAAAATAGCCAGAGTGCATCGATGCATGGCT
Found at i:3936816 original size:65 final size:64
Alignment explanation
Indices: 3936683--3936842 Score: 178
Period size: 65 Copynumber: 2.5 Consensus size: 64
3936673 TGCACCAAGT
* * ***
3936683 GTGCATCGATGCATTAAATGCATTCGATGTTTGAAAAATAGCCTGGTGCATCGATGCATGGCTT
1 GTGCATCGATGCATCAAATGCATTCGATGTTTGAAAAATAGCCAGGTGCATCGATGCATGGAGA
* **
3936747 GTGCATCGATGCATCAAATGCATTCGGTGTTTTG-AAAATATTCAGAGTGCATCGATGCATGGAG
1 GTGCATCGATGCATCAAATGCATTCGATG-TTTGAAAAATAGCCAG-GTGCATCGATGCATGGAG
3936811 A
64 A
* * ** *
3936812 GTGCATCGGTGAATGGAATGCATTTGATGTT
1 GTGCATCGATGCATCAAATGCATTCGATGTT
3936843 CAATTAATTC
Statistics
Matches: 80, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
64 37 0.46
65 43 0.54
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (64 bp):
GTGCATCGATGCATCAAATGCATTCGATGTTTGAAAAATAGCCAGGTGCATCGATGCATGGAGA
Found at i:3936827 original size:19 final size:19
Alignment explanation
Indices: 3936790--3936828 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
3936780 GAAAATATTC
*
3936790 AGAGTGCATCGATGCATGG
1 AGAGTGCATCGATGAATGG
*
3936809 AGAGTGCATCGGTGAATGG
1 AGAGTGCATCGATGAATGG
3936828 A
1 A
3936829 ATGCATTTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.28, C:0.13, G:0.38, T:0.21
Consensus pattern (19 bp):
AGAGTGCATCGATGAATGG
Found at i:3937507 original size:17 final size:17
Alignment explanation
Indices: 3937485--3937528 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
3937475 AATAGTCAAG
*
3937485 CATCCAAATATCAGAAA
1 CATCCAAATAACAGAAA
* *
3937502 CATCCAAACAAACATAAA
1 CATCCAAA-TAACAGAAA
3937520 CATCCAAAT
1 CATCCAAAT
3937529 CAAAAAGTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
17 8 0.36
18 14 0.64
ACGTcount: A:0.55, C:0.27, G:0.02, T:0.16
Consensus pattern (17 bp):
CATCCAAATAACAGAAA
Found at i:3943293 original size:22 final size:21
Alignment explanation
Indices: 3943251--3943290 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
3943241 GAGTTTGTTT
*
3943251 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
3943272 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
3943291 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:3945313 original size:46 final size:45
Alignment explanation
Indices: 3945217--3945318 Score: 143
Period size: 45 Copynumber: 2.2 Consensus size: 45
3945207 TGCACCAAGT
* *
3945217 GTGCATCGATGCATTAAATGCATTCGATGTTTGAAAAATAGCCTG
1 GTGCATCGATGCATCAAATGCATTCGATGTTTGAAAAATAGCCAG
**
3945262 GTGCATCGATGCATCAAATGCATTCGATGTTTTG-AAAATATTCAG
1 GTGCATCGATGCATCAAATGCATTCGATG-TTTGAAAAATAGCCAG
3945307 AGTGCATCGATG
1 -GTGCATCGATG
3945319 TATGGAGAGT
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
45 36 0.71
46 15 0.29
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (45 bp):
GTGCATCGATGCATCAAATGCATTCGATGTTTGAAAAATAGCCAG
Found at i:3945329 original size:19 final size:19
Alignment explanation
Indices: 3945305--3945356 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 19
3945295 GAAAATATTC
3945305 AGAGTGCATCGATGTATGG
1 AGAGTGCATCGATGTATGG
* *
3945324 AGAGTGCATCGGTGCATGG
1 AGAGTGCATCGATGTATGG
3945343 A-A-TGCATTCGATGT
1 AGAGTGCA-TCGATGT
3945357 TCAATTAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
17 4 0.14
18 6 0.21
19 18 0.64
ACGTcount: A:0.25, C:0.13, G:0.35, T:0.27
Consensus pattern (19 bp):
AGAGTGCATCGATGTATGG
Found at i:3951852 original size:20 final size:21
Alignment explanation
Indices: 3951813--3951853 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
3951803 GAGTTTGTTT
3951813 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTGAAACA
3951834 TCATTTTT-ATATTTT-AAACA
1 TCATTTTTCA-ATTTTGAAACA
3951854 CAATTTCTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.34, C:0.12, G:0.02, T:0.51
Consensus pattern (21 bp):
TCATTTTTCAATTTTGAAACA
Found at i:3953905 original size:64 final size:66
Alignment explanation
Indices: 3953800--3953962 Score: 206
Period size: 65 Copynumber: 2.5 Consensus size: 66
3953790 CGGTGCACCA
* * *
3953800 AGTGTGCATCGATGGATTAAATGCATTCGATG-TTTGAAAAATAGCCTG-GTGCATCGATGCATG
1 AGTGTGCATCGATGCATCAAATGCATTCGATGTTTTGAAAAATAGCCAGAGTGCATCGATGCATG
3953863 G
66 G
** **
3953864 CTTGTGCATCGATGCATCAAATGCATTCGATGTTTTG-AAAATATTCAGAGTGCATCGATGCATG
1 AGTGTGCATCGATGCATCAAATGCATTCGATGTTTTGAAAAATAGCCAGAGTGCATCGATGCATG
3953928 G
66 G
* * **
3953929 AGAGTGCATCGGTGCATGGAATGCATTCGATGTT
1 AGTGTGCATCGATGCATCAAATGCATTCGATGTT
3953963 CAATTAATTC
Statistics
Matches: 84, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
64 36 0.43
65 48 0.57
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (66 bp):
AGTGTGCATCGATGCATCAAATGCATTCGATGTTTTGAAAAATAGCCAGAGTGCATCGATGCATG
G
Found at i:3953934 original size:19 final size:19
Alignment explanation
Indices: 3953910--3953960 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
3953900 GAAAATATTC
3953910 AGAGTGCATCGATGCATGG
1 AGAGTGCATCGATGCATGG
*
3953929 AGAGTGCATCGGTGCATGG
1 AGAGTGCATCGATGCATGG
3953948 A-A-TGCATTCGATG
1 AGAGTGCA-TCGATG
3953961 TTCAATTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 4 0.14
18 6 0.21
19 19 0.66
ACGTcount: A:0.25, C:0.16, G:0.35, T:0.24
Consensus pattern (19 bp):
AGAGTGCATCGATGCATGG
Found at i:3954002 original size:65 final size:65
Alignment explanation
Indices: 3953804--3954011 Score: 189
Period size: 65 Copynumber: 3.2 Consensus size: 65
3953794 GCACCAAGTG
* * * * ** *
3953804 TGCATCGATGGATTAAATGCATTCGATGTTTGAAAAATAGCCTG-GTGCATCGATGCATGG-CTT
1 TGCATCGGTGCATGAAATGCATTCGATGTTT-CAAAATATTCAGAGTGCATCGATGCATGGAC-T
3953867 G-
64 GA
* * *
3953868 TGCATCGATGCATCAAATGCATTCGATGTTTTGAAAATATTCAGAGTGCATCGATGCATGGA--G
1 TGCATCGGTGCATGAAATGCATTCGATG-TTTCAAAATATTCAGAGTGCATCGATGCATGGACTG
3953931 A
65 A
* *
3953932 GTGCATCGGTGCATGGAATGCATTCGATG-TTC-AATTAATTCATCGA-TGCATCGATGCATGGA
1 -TGCATCGGTGCATGAAATGCATTCGATGTTTCAAAAT-ATTCA--GAGTGCATCGATGCATGGA
3953994 CTGA
62 CTGA
3953998 TGCATCGGTGCATG
1 TGCATCGGTGCATG
3954012 CCTTTGAATA
Statistics
Matches: 123, Mismatches: 11, Indels: 19
0.80 0.07 0.12
Matches are distributed among these distances:
62 3 0.02
63 8 0.07
64 50 0.41
65 60 0.49
66 2 0.02
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (65 bp):
TGCATCGGTGCATGAAATGCATTCGATGTTTCAAAATATTCAGAGTGCATCGATGCATGGACTGA
Found at i:3969234 original size:22 final size:21
Alignment explanation
Indices: 3969206--3969279 Score: 78
Period size: 22 Copynumber: 3.3 Consensus size: 21
3969196 ACCTGAAAGA
3969206 AAAATAAAAAAAAAGATAAAAT
1 AAAATAAAAAAAAAG-TAAAAT
* *
3969228 AAAATAAAATAAAAGTAAAGGT
1 AAAATAAAAAAAAAGTAAA-AT
3969250 AAAAGTAAAAAATAAAG-AAAAT
1 AAAA-TAAAAAA-AAAGTAAAAT
3969272 AACAATAA
1 AA-AATAA
3969280 TATATATATA
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
21 4 0.09
22 25 0.57
23 11 0.25
24 4 0.09
ACGTcount: A:0.76, C:0.01, G:0.08, T:0.15
Consensus pattern (21 bp):
AAAATAAAAAAAAAGTAAAAT
Found at i:3969328 original size:27 final size:30
Alignment explanation
Indices: 3969276--3969331 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
3969266 GAAAATAACA
3969276 ATAATATATATATATATATATTCAAAAACT
1 ATAATATATATATATATATATTCAAAAACT
3969306 ATAATATATAT-TATAT-T-TTCAAAAAC
1 ATAATATATATATATATATATTCAAAAAC
3969332 AATATGTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
27 9 0.35
28 1 0.04
29 5 0.19
30 11 0.42
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (30 bp):
ATAATATATATATATATATATTCAAAAACT
Found at i:3969373 original size:27 final size:26
Alignment explanation
Indices: 3969332--3969383 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
3969322 TTTCAAAAAC
*
3969332 AATATGTTTAAAAAACTATATATATTA
1 AATATGTTTAAAAAAAT-TATATATTA
**
3969359 AATATGTTTTCAAAAATTATATATT
1 AATATGTTTAAAAAAATTATATATT
3969384 TTAAAAAATA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 8 0.36
27 14 0.64
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.44
Consensus pattern (26 bp):
AATATGTTTAAAAAAATTATATATTA
Found at i:3969382 original size:28 final size:27
Alignment explanation
Indices: 3969332--3969388 Score: 78
Period size: 28 Copynumber: 2.1 Consensus size: 27
3969322 TTTCAAAAAC
3969332 AATATGTTTAAAAAACTATATATATTA
1 AATATGTTTAAAAAACTATATATATTA
* * *
3969359 AATATGTTTTCAAAAATTATATATTTTA
1 AATATG-TTTAAAAAACTATATATATTA
3969387 AA
1 AA
3969389 AAATATCTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 6 0.23
28 20 0.77
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.44
Consensus pattern (27 bp):
AATATGTTTAAAAAACTATATATATTA
Done.