Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008426.1 Hibiscus syriacus cultivar Beakdansim tig00111210_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4445546
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 5 of 18
Found at i:827967 original size:39 final size:37
Alignment explanation
Indices: 827935--828027 Score: 104
Period size: 35 Copynumber: 2.5 Consensus size: 37
827925 ATATAGTTTG
*
827935 TTTAAAACGTTTTTGAAAACTTATATACAATATATAAGT
1 TTTAAAAC-ATTTTGAAAA-TTATATACAATATATAAGT
827974 TTTAAAACATTTTGAAAATTATATA-ACATATAT---T
1 TTTAAAACATTTTGAAAATTATATACA-ATATATAAGT
*
828008 TTTGAAATCATTTTGAAAAT
1 TTT-AAAACATTTTGAAAAT
828028 ATAATGTATA
Statistics
Matches: 50, Mismatches: 2, Indels: 8
0.83 0.03 0.13
Matches are distributed among these distances:
34 4 0.08
35 15 0.30
36 1 0.02
37 13 0.26
38 9 0.18
39 8 0.16
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.43
Consensus pattern (37 bp):
TTTAAAACATTTTGAAAATTATATACAATATATAAGT
Found at i:828020 original size:35 final size:35
Alignment explanation
Indices: 827910--828027 Score: 105
Period size: 39 Copynumber: 3.2 Consensus size: 35
827900 AACGGTTTCC
* * *
827910 GAAAATATATATATAATATAGTTTGTTTAAAACGTTTTT
1 GAAAAT-TATATACAATATA-TAT-TTTAAAAC-ATTTT
827949 GAAAACTTATATACAATATATAAGTTTTAAAACATTTT
1 GAAAA-TTATATACAATATAT-A-TTTTAAAACATTTT
*
827987 GAAAATTATATA-ACATATAT-TTTTGAAATCATTTT
1 GAAAATTATATACA-ATATATATTTT-AAAACATTTT
828022 GAAAAT
1 GAAAAT
828028 ATAATGTATA
Statistics
Matches: 70, Mismatches: 4, Indels: 14
0.80 0.05 0.16
Matches are distributed among these distances:
34 4 0.06
35 15 0.21
36 1 0.01
37 13 0.19
38 10 0.14
39 25 0.36
40 2 0.03
ACGTcount: A:0.45, C:0.05, G:0.08, T:0.42
Consensus pattern (35 bp):
GAAAATTATATACAATATATATTTTAAAACATTTT
Found at i:828077 original size:108 final size:111
Alignment explanation
Indices: 827938--828140 Score: 276
Period size: 109 Copynumber: 1.9 Consensus size: 111
827928 TAGTTTGTTT
* *
827938 AAAACGTTTTTGAAAACTTATATACAATATATA-AGTTTT-AAAACATTTT-GAAAA-TTATATA
1 AAAACATTTTTGAAAAATTATATACAATATATATAGTTTTAAAAACATTTTGGAAAACTTATAT-
*
827999 ACATATATTTTTGAAATCA-TTTTGAAAA-TATAATGTATAGTTTAAAAA
65 --A-ATATTTTTAAAATCATTTTTGAAAACTATAATGTATAGTTTAAAAA
* *
828047 AAAACATTTTTGAAAAATT-TATATAATATATATAGTTTTAAAAATATTTTGGAAAACTTATATA
1 AAAACATTTTTGAAAAATTATATACAATATATATAGTTTTAAAAACATTTTGGAAAACTTATATA
828111 ATATTTTTAAAATCATTTTTGAAAACTATA
66 ATATTTTTAAAATCATTTTTGAAAACTATA
828141 TGGTATATAG
Statistics
Matches: 83, Mismatches: 5, Indels: 11
0.84 0.05 0.11
Matches are distributed among these distances:
108 26 0.31
109 33 0.40
110 13 0.16
111 5 0.06
112 6 0.07
ACGTcount: A:0.47, C:0.05, G:0.06, T:0.42
Consensus pattern (111 bp):
AAAACATTTTTGAAAAATTATATACAATATATATAGTTTTAAAAACATTTTGGAAAACTTATATA
ATATTTTTAAAATCATTTTTGAAAACTATAATGTATAGTTTAAAAA
Found at i:828123 original size:32 final size:34
Alignment explanation
Indices: 828072--828191 Score: 92
Period size: 33 Copynumber: 3.6 Consensus size: 34
828062 AATTTATATA
828072 ATATATATAGTTTTAAAAAT-ATTTTGGAAAACT
1 ATATATATAGTTTTAAAAATCATTTTGGAAAACT
* *
828105 -TATATAATA-TTTTTAAAATCATTTTTGAAAACT
1 ATATAT-ATAGTTTTAAAAATCATTTTGGAAAACT
* * *
828138 ATATGGTATATAGTTTTGAAAA-CGTTTT--TAAA-T
1 ATA---TATATAGTTTTAAAAATCATTTTGGAAAACT
*
828171 ATAATATATAGTTTAAAAAAT
1 AT-ATATATAGTTTTAAAAAT
828192 ATATATTTTG
Statistics
Matches: 71, Mismatches: 7, Indels: 19
0.73 0.07 0.20
Matches are distributed among these distances:
31 14 0.20
32 14 0.20
33 18 0.25
34 6 0.08
36 8 0.11
37 11 0.15
ACGTcount: A:0.44, C:0.03, G:0.08, T:0.44
Consensus pattern (34 bp):
ATATATATAGTTTTAAAAATCATTTTGGAAAACT
Found at i:828226 original size:16 final size:16
Alignment explanation
Indices: 828205--828250 Score: 58
Period size: 15 Copynumber: 2.8 Consensus size: 16
828195 TATTTTGAGA
828205 TATATATATTATATAGTC
1 TATAT-TATTAT-TAGTC
*
828223 TATATTATTATTAGTA
1 TATATTATTATTAGTC
828239 T-TATTATTATTA
1 TATATTATTATTA
828251 TTATTTCTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 11 0.41
16 5 0.19
17 6 0.22
18 5 0.19
ACGTcount: A:0.37, C:0.02, G:0.04, T:0.57
Consensus pattern (16 bp):
TATATTATTATTAGTC
Found at i:828233 original size:3 final size:3
Alignment explanation
Indices: 828225--828255 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
828215 ATATAGTCTA
*
828225 TAT TAT TAT TAG TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
828256 TCTTTTCATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:828289 original size:18 final size:18
Alignment explanation
Indices: 828239--828298 Score: 63
Period size: 18 Copynumber: 3.3 Consensus size: 18
828229 ATTATTAGTA
828239 TTATT-ATTATTA-TTATT
1 TTATTCATT-TTATTTATT
*
828256 TCTTTTCATTTTATTTATT
1 T-TATTCATTTTATTTATT
828275 TTATTCATTTTATTTCA-T
1 TTATTCATTTTATTT-ATT
828293 TTATTC
1 TTATTC
828299 TGTTTTGTGG
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
17 1 0.03
18 26 0.70
19 10 0.27
ACGTcount: A:0.22, C:0.08, G:0.00, T:0.70
Consensus pattern (18 bp):
TTATTCATTTTATTTATT
Found at i:828297 original size:9 final size:10
Alignment explanation
Indices: 828259--828294 Score: 58
Period size: 9 Copynumber: 3.8 Consensus size: 10
828249 TATTATTTCT
828259 TTTCATTTTA
1 TTTCATTTTA
828269 TTT-ATTTTA
1 TTTCATTTTA
828278 -TTCATTTTA
1 TTTCATTTTA
828287 TTTCATTT
1 TTTCATTT
828295 ATTCTGTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
8 2 0.08
9 12 0.50
10 10 0.42
ACGTcount: A:0.19, C:0.08, G:0.00, T:0.72
Consensus pattern (10 bp):
TTTCATTTTA
Found at i:829860 original size:14 final size:15
Alignment explanation
Indices: 829843--829878 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
829833 TAATTATCAT
829843 TATTTTTTTTTTG-A
1 TATTTTTTTTTTGAA
*
829857 TATTTCTTTTTTGAA
1 TATTTTTTTTTTGAA
829872 TATTTTT
1 TATTTTT
829879 AGTAATAACA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
14 12 0.63
15 7 0.37
ACGTcount: A:0.17, C:0.03, G:0.06, T:0.75
Consensus pattern (15 bp):
TATTTTTTTTTTGAA
Found at i:833622 original size:106 final size:106
Alignment explanation
Indices: 833488--834897 Score: 2394
Period size: 106 Copynumber: 13.3 Consensus size: 106
833478 CTCGAGAGTA
*
833488 AATTTCAACTTCACCACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
1 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
*
833553 GACCGCTGGTTGTCAATAACCAACTTCTCAATTTCAGAGCC
66 GACCGCTGGTTGTCAATAAACAACTTCTCAATTTCAGAGCC
* *
833594 AATTTCAACTTCACAACGAAGAATATTGGACCCCAGACAACGCAAGTTCAACTTCACGACGAAGG
1 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
833659 GACCGCTGGTTGTCAATAAACAACTTCTCAATTTCAGAGCC
66 GACCGCTGGTTGTCAATAAACAACTTCTCAATTTCAGAGCC
*
833700 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAATGCAAGTTCAACTTCACGACGAAGG
1 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
* *
833765 GACCGCTGGTTGTCAATAAACAATTTCCCAATTTCAGAGCC
66 GACCGCTGGTTGTCAATAAACAACTTCTCAATTTCAGAGCC
* *
833806 AATTTCAACTTCACCACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCATGACGAAGG
1 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
*
833871 GACCGCTGGTTGTCAATAACCAACTTCTCAATTTCAGAGCC
66 GACCGCTGGTTGTCAATAAACAACTTCTCAATTTCAGAGCC
*
833912 AATTTCAACTTCACAACGAAGGATATTGGACCCCAGACAACGCAAGTTCAACTTCACGACGAAGG
1 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
833977 GACCGCTGGTTGTCAATAAACAACTTCTCAATTTCAGAGCC
66 GACCGCTGGTTGTCAATAAACAACTTCTCAATTTCAGAGCC
834018 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
1 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
* *
834083 GACCGCTGGTTGTCAATAAACAATTTCCCAATTTCAGAGCC
66 GACCGCTGGTTGTCAATAAACAACTTCTCAATTTCAGAGCC
* * *
834124 AATTTCAACTTCACCACGAAGGATATTGGACTCCAGACAATGCAAGTTCAACTTCATGACGAAGG
1 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
*
834189 GACCGCTGGTTGTCAATAACCAACTTCTCAATTTCAGAGCC
66 GACCGCTGGTTGTCAATAAACAACTTCTCAATTTCAGAGCC
* * *
834230 AATTTCAACTTCACAACGAAGGATATTGGACCCCAGACAATGCAAGTTCAACTTCACGATGAAGG
1 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
834295 GACCGCTGGTTGTCAATAAACAACTTCTCAATTTCAGAGCC
66 GACCGCTGGTTGTCAATAAACAACTTCTCAATTTCAGAGCC
*
834336 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGATGAAGG
1 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
* *
834401 GACCGCTGGTTGTCAATAAACAATTTCCCAATTTCAGAGCC
66 GACCGCTGGTTGTCAATAAACAACTTCTCAATTTCAGAGCC
*
834442 AATTTCAACTTCACCACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
1 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
*
834507 GACCGCTGGTTTTCAATAAACAACTTCTCAATTTCAGAGCC
66 GACCGCTGGTTGTCAATAAACAACTTCTCAATTTCAGAGCC
834548 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
1 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
* *
834613 GACCGCTGGTTGTCAATAAACAATTTCCCAATTTCAGAGCC
66 GACCGCTGGTTGTCAATAAACAACTTCTCAATTTCAGAGCC
834654 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
1 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
* **
834719 GACCGCTGGTTGTCAATAAACAATTTC-CTAAACTCAGAGCC
66 GACCGCTGGTTGTCAATAAACAACTTCTC-AATTTCAGAGCC
** * * * *
834760 AATTTCAACTTCACTGCGAAGGATATTGGACTCGAGGCAACACAAGTTCAACTTCACAACGAAGG
1 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
* * *
834825 GA-CGACTGGTTGTCAATAAACAA-TTTTCTAGTTCCAGAGCC
66 GACCG-CTGGTTGTCAATAAACAACTTCTC-AATTTCAGAGCC
** *
834866 AATTTCAACTTCACGGCGGAGGATATTGGACT
1 AATTTCAACTTCACAACGAAGGATATTGGACT
834898 TGGAACAATA
Statistics
Matches: 1240, Mismatches: 61, Indels: 6
0.95 0.05 0.00
Matches are distributed among these distances:
105 5 0.00
106 1235 1.00
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.23
Consensus pattern (106 bp):
AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGG
GACCGCTGGTTGTCAATAAACAACTTCTCAATTTCAGAGCC
Found at i:835715 original size:35 final size:35
Alignment explanation
Indices: 835605--835722 Score: 105
Period size: 39 Copynumber: 3.2 Consensus size: 35
835595 AACGGTTTCC
* * *
835605 GAAAATATATATATAATATAGTTTGTTTAAAACGTTTTT
1 GAAAAT-TATATACAATATA-TAT-TTTAAAAC-ATTTT
835644 GAAAACTTATATACAATATATAAGTTTTAAAACATTTT
1 GAAAA-TTATATACAATATAT-A-TTTTAAAACATTTT
*
835682 GAAAATTATATA-ACATATAT-TTTTGAAATCATTTT
1 GAAAATTATATACA-ATATATATTTT-AAAACATTTT
835717 GAAAAT
1 GAAAAT
835723 ATAATGTATA
Statistics
Matches: 70, Mismatches: 4, Indels: 14
0.80 0.05 0.16
Matches are distributed among these distances:
34 4 0.06
35 15 0.21
36 1 0.01
37 13 0.19
38 10 0.14
39 25 0.36
40 2 0.03
ACGTcount: A:0.45, C:0.05, G:0.08, T:0.42
Consensus pattern (35 bp):
GAAAATTATATACAATATATATTTTAAAACATTTT
Found at i:835772 original size:108 final size:109
Alignment explanation
Indices: 835633--835833 Score: 270
Period size: 108 Copynumber: 1.9 Consensus size: 109
835623 TAGTTTGTTT
* *
835633 AAAACGTTTTTGAAAACTTATATACAATATATAAGTTTT-AAAACATTTT-GAAAA-TTATATAA
1 AAAACATTTTTGAAAAATTATATACAATATAT-AGTTTTAAAAACATTTTGGAAAACTTATAT--
*
835695 CATATATTTTTGAAATCA-TTTTGAAAA-TATAATGTATAGTTTTAAAA
63 -A-ATATTTTTAAAATCATTTTTGAAAACTATAATGTATAGTTTTAAAA
* *
835742 AAAACATTTTTGAAAAATT-TATATAATATATAGTTTTAAAAATATTTTGGAAAACTTATATAAT
1 AAAACATTTTTGAAAAATTATATACAATATATAGTTTTAAAAACATTTTGGAAAACTTATATAAT
835806 ATTTTTAAAATCATTTTTGAAAACTATA
66 ATTTTTAAAATCATTTTTGAAAACTATA
835834 TGGTATATAG
Statistics
Matches: 82, Mismatches: 5, Indels: 11
0.84 0.05 0.11
Matches are distributed among these distances:
106 14 0.17
107 16 0.20
108 24 0.29
109 22 0.27
110 6 0.07
ACGTcount: A:0.46, C:0.05, G:0.06, T:0.42
Consensus pattern (109 bp):
AAAACATTTTTGAAAAATTATATACAATATATAGTTTTAAAAACATTTTGGAAAACTTATATAAT
ATTTTTAAAATCATTTTTGAAAACTATAATGTATAGTTTTAAAA
Found at i:835790 original size:37 final size:35
Alignment explanation
Indices: 835573--835883 Score: 162
Period size: 35 Copynumber: 8.6 Consensus size: 35
835563 TTTTTAAAAA
* * *
835573 ATATAACATATAGTTTTCAAAAAACGGTTTCCGAAAA-T
1 ATATAATATATAGTTTT--AAAAAC-ATTT-TGAAAATT
* *
835611 ATATATATAATATAGTTTGTTTAAAACGTTTTTGAAAACTT
1 ATATA-AT-ATATAG-TT-TTAAAAAC-ATTTTGAAAA-TT
835652 ATATACAATATATAAGTTTT-AAAACATTTTGAAAATT
1 ATAT--AATATAT-AGTTTTAAAAACATTTTGAAAATT
* * * *
835689 ATATAACATATATTTTTGAAATCATTTTG-AAA--
1 ATATAATATATAGTTTTAAAAACATTTTGAAAATT
*
835721 ATATAATGTATAGTTTTAAAAAAAACATTTTTGAAAAATTT
1 ATATAATATATAGTTTT---AAAAACA-TTTTG-AAAA-TT
*
835762 ATATAATATATAGTTTTAAAAATATTTTGGAAAACTT
1 ATATAATATATAGTTTTAAAAACATTTT-GAAAA-TT
* *
835799 ATAT-A-ATAT--TTTTAAAATCATTTTTGAAAACT
1 ATATAATATATAGTTTTAAAAACA-TTTTGAAAATT
** * * *
835831 ATATGGTATATAGTTTTGAAAACGTTTT--TAA--
1 ATATAATATATAGTTTTAAAAACATTTTGAAAATT
*
835862 ATATAATATATAGTTTAAAAAA
1 ATATAATATATAGTTTTAAAAA
835884 TATATTTTTT
Statistics
Matches: 220, Mismatches: 28, Indels: 57
0.72 0.09 0.19
Matches are distributed among these distances:
31 18 0.08
32 19 0.09
33 16 0.07
34 16 0.07
35 29 0.13
36 14 0.06
37 20 0.09
38 24 0.11
39 11 0.05
40 17 0.08
41 29 0.13
42 6 0.03
43 1 0.00
ACGTcount: A:0.45, C:0.05, G:0.08, T:0.42
Consensus pattern (35 bp):
ATATAATATATAGTTTTAAAAACATTTTGAAAATT
Found at i:835816 original size:32 final size:32
Alignment explanation
Indices: 835767--835834 Score: 86
Period size: 32 Copynumber: 2.1 Consensus size: 32
835757 AATTTATATA
835767 ATATATAGTTTTAAAAAT-ATTTTGGAAAACTT
1 ATATATAGTTTTAAAAATCATTTTGGAAAAC-T
* *
835799 ATATAATA-TTTTTAAAATCATTTTTGAAAACT
1 ATAT-ATAGTTTTAAAAATCATTTTGGAAAACT
835831 ATAT
1 ATAT
835835 GGTATATAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
32 18 0.56
33 14 0.44
ACGTcount: A:0.44, C:0.04, G:0.06, T:0.46
Consensus pattern (32 bp):
ATATATAGTTTTAAAAATCATTTTGGAAAACT
Found at i:835926 original size:3 final size:3
Alignment explanation
Indices: 835918--835948 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
835908 ATATAGTCTA
*
835918 TAT TAT TAT TAG TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
835949 TCTTTTCATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:835982 original size:18 final size:18
Alignment explanation
Indices: 835932--835991 Score: 63
Period size: 18 Copynumber: 3.3 Consensus size: 18
835922 ATTATTAGTA
835932 TTATT-ATTATTA-TTATT
1 TTATTCATT-TTATTTATT
*
835949 TCTTTTCATTTTATTTATT
1 T-TATTCATTTTATTTATT
835968 TTATTCATTTTATTTCA-T
1 TTATTCATTTTATTT-ATT
835986 TTATTC
1 TTATTC
835992 TGTTTTGTGG
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
17 1 0.03
18 26 0.70
19 10 0.27
ACGTcount: A:0.22, C:0.08, G:0.00, T:0.70
Consensus pattern (18 bp):
TTATTCATTTTATTTATT
Found at i:835990 original size:9 final size:10
Alignment explanation
Indices: 835952--835987 Score: 58
Period size: 9 Copynumber: 3.8 Consensus size: 10
835942 TATTATTTCT
835952 TTTCATTTTA
1 TTTCATTTTA
835962 TTT-ATTTTA
1 TTTCATTTTA
835971 -TTCATTTTA
1 TTTCATTTTA
835980 TTTCATTT
1 TTTCATTT
835988 ATTCTGTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
8 2 0.08
9 12 0.50
10 10 0.42
ACGTcount: A:0.19, C:0.08, G:0.00, T:0.72
Consensus pattern (10 bp):
TTTCATTTTA
Found at i:837557 original size:14 final size:14
Alignment explanation
Indices: 837533--837567 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
837523 TAATTATCAT
837533 TATTTTTTTTTG-A
1 TATTTTTTTTTGAA
837546 TATTTCTTTTTTGAA
1 TATTT-TTTTTTGAA
837561 TATTTTT
1 TATTTTT
837568 AGTAATAACA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
13 5 0.25
14 9 0.45
15 6 0.30
ACGTcount: A:0.17, C:0.03, G:0.06, T:0.74
Consensus pattern (14 bp):
TATTTTTTTTTGAA
Found at i:841083 original size:24 final size:24
Alignment explanation
Indices: 841052--841108 Score: 78
Period size: 24 Copynumber: 2.4 Consensus size: 24
841042 TTAAAATGAT
*
841052 AAACGAACGAACGTAAACAAACAA
1 AAACGAACGAACATAAACAAACAA
* * *
841076 AAATGAACGAACATAAACAGACAT
1 AAACGAACGAACATAAACAAACAA
841100 AAACGAACG
1 AAACGAACG
841109 TGAACGAACA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.60, C:0.19, G:0.14, T:0.07
Consensus pattern (24 bp):
AAACGAACGAACATAAACAAACAA
Found at i:841235 original size:23 final size:23
Alignment explanation
Indices: 841192--841235 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
841182 TAATTGGGTT
*
841192 TTAAAATATTAATAGGTTTAAGG
1 TTAAAATATTAATAAGTTTAAGG
*
841215 TTAAAAT-TTATTAAGTCTTAA
1 TTAAAATATTAATAAGT-TTAA
841236 TTAAAACAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.43, C:0.02, G:0.11, T:0.43
Consensus pattern (23 bp):
TTAAAATATTAATAAGTTTAAGG
Found at i:846596 original size:50 final size:50
Alignment explanation
Indices: 846539--846663 Score: 178
Period size: 50 Copynumber: 2.5 Consensus size: 50
846529 TAGAACTCTC
*
846539 TAGAAGCTTGTGGAAGAGTGTGGAATCCTCTAGAATATTTTGGAGATCTG
1 TAGAAGCTTGTGGAAGAGTGTGGAATCCTCTAGAATATTCTGGAGATCTG
* * *
846589 TAGAAGCTTGTGGAAGAGTGTGGAATCCTTTGGAATATTCTGGAGATGTG
1 TAGAAGCTTGTGGAAGAGTGTGGAATCCTCTAGAATATTCTGGAGATCTG
* * * *
846639 TGGAACCTTATGGAAGAGTATGGAA
1 TAGAAGCTTGTGGAAGAGTGTGGAA
846664 GAATATGGAA
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
50 67 1.00
ACGTcount: A:0.29, C:0.09, G:0.32, T:0.30
Consensus pattern (50 bp):
TAGAAGCTTGTGGAAGAGTGTGGAATCCTCTAGAATATTCTGGAGATCTG
Found at i:850030 original size:50 final size:50
Alignment explanation
Indices: 849955--850052 Score: 151
Period size: 50 Copynumber: 2.0 Consensus size: 50
849945 TAGAACTCTC
*
849955 TAGAAGCCTGTGAAAGAGTGTGGAATCCTCTGGAATATCCTGGAGATGTG
1 TAGAAGCCTGTGAAAGAGTGTGGAATCCTCAGGAATATCCTGGAGATGTG
* * **
850005 TAGAAGCTTGTGGAAGAGTGTGGAATCCTCAGGAATATTTTGGAGATG
1 TAGAAGCCTGTGAAAGAGTGTGGAATCCTCAGGAATATCCTGGAGATG
850053 AGTGGAACCT
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 43 1.00
ACGTcount: A:0.29, C:0.11, G:0.33, T:0.28
Consensus pattern (50 bp):
TAGAAGCCTGTGAAAGAGTGTGGAATCCTCAGGAATATCCTGGAGATGTG
Found at i:850069 original size:50 final size:50
Alignment explanation
Indices: 849955--850073 Score: 143
Period size: 50 Copynumber: 2.4 Consensus size: 50
849945 TAGAACTCTC
* * *
849955 TAGAAGCC-TGTGAAAGAGTGTGGAATCCTCTGGAATATCCTGGAGATGTG
1 TAGAA-CCTTGTGGAAGAGTGTGGAATCCTCAGGAATATCCTGGAGATGAG
* **
850005 TAGAAGCTTGTGGAAGAGTGTGGAATCCTCAGGAATATTTTGGAGATGAG
1 TAGAACCTTGTGGAAGAGTGTGGAATCCTCAGGAATATCCTGGAGATGAG
*
850055 TGGAACCTAT-TGGAAGAGT
1 TAGAACCT-TGTGGAAGAGT
850074 ATGAAGAATA
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
49 1 0.02
50 57 0.97
51 1 0.02
ACGTcount: A:0.29, C:0.11, G:0.33, T:0.27
Consensus pattern (50 bp):
TAGAACCTTGTGGAAGAGTGTGGAATCCTCAGGAATATCCTGGAGATGAG
Found at i:852960 original size:29 final size:29
Alignment explanation
Indices: 852918--852973 Score: 103
Period size: 29 Copynumber: 1.9 Consensus size: 29
852908 GATTTTATAA
852918 GGTAATATATGTCCAAAAGACTCTTAAAT
1 GGTAATATATGTCCAAAAGACTCTTAAAT
*
852947 GGTAATATATGTCCGAAAGACTCTTAA
1 GGTAATATATGTCCAAAAGACTCTTAA
852974 CTCATTTGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.30
Consensus pattern (29 bp):
GGTAATATATGTCCAAAAGACTCTTAAAT
Found at i:853963 original size:60 final size:60
Alignment explanation
Indices: 853899--854012 Score: 142
Period size: 60 Copynumber: 1.9 Consensus size: 60
853889 AATAGTCCTC
* * *
853899 TGACTATAGGATATTGTTTTATTAAG-TCTCTCGACTA-TTAAAAGTTACAAAATGATCATT
1 TGACTAAAGAATATTGGTTTATTAAGTTC-CTCGAC-AGTTAAAAGTTACAAAATGATCATT
* * *
853959 TGACTAAATAATGTTGGTTTGTTAAGTTCCTCGACAGTTAAAAGTTACAAAATG
1 TGACTAAAGAATATTGGTTTATTAAGTTCCTCGACAGTTAAAAGTTACAAAATG
854013 GTTACCATAC
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
59 1 0.02
60 43 0.93
61 2 0.04
ACGTcount: A:0.35, C:0.11, G:0.16, T:0.38
Consensus pattern (60 bp):
TGACTAAAGAATATTGGTTTATTAAGTTCCTCGACAGTTAAAAGTTACAAAATGATCATT
Found at i:854758 original size:43 final size:43
Alignment explanation
Indices: 854711--855398 Score: 502
Period size: 43 Copynumber: 16.2 Consensus size: 43
854701 AATTGAGTAT
* *
854711 CCTAATTTTTTCAATCACACTTTTTACCTTAATAATTAAGGCC
1 CCTAATTTTTTCAATCTCACTTTTTACCTTTATAATTAAGGCC
* * * *
854754 CCTAATTTTTTCAATTTCACTTTCTAGCTTTATAATTGAA-GTC
1 CCTAATTTTTTCAATCTCACTTTTTACCTTTATAATT-AAGGCC
* * * * * *
854797 CTTAATTTTTTAAATCT--CTTTTCCACCTTTGTAACTGAA-GCT
1 CCTAATTTTTTCAATCTCACTTTT-TACCTTTATAA-TTAAGGCC
* *
854839 CCTAATTTTTTCAATCTCATTTTTTACCTTTATAATTGAA-ACC
1 CCTAATTTTTTCAATCTCACTTTTTACCTTTATAATT-AAGGCC
* * * *
854882 CCTAATTTTTT--ATTTCACTTTCTATCTTTATAATTGAA-GAC
1 CCTAATTTTTTCAATCTCACTTTTTACCTTTATAATT-AAGGCC
* * * * *
854923 CTTAATTTTTT-AATCTCACTTATTACCTTTATATTTGAGG-T
1 CCTAATTTTTTCAATCTCACTTTTTACCTTTATAATTAAGGCC
* *
854964 CCTAATATTTTCAAT-TCCACCTTTTACCTTTATAATTGAA-GCC
1 CCTAATTTTTTCAATCT-CACTTTTTACCTTTATAATT-AAGGCC
* * *
855007 CC-AATTTTTTTTAATCTCACTTTTTACATTTATAATTGAGGCC
1 CCTAA-TTTTTTCAATCTCACTTTTTACCTTTATAATTAAGGCC
* * * * * *
855050 CTTGATTTTTTCAA-CTCACTTTTTTACTTTTATAATTGAGACT
1 CCTAATTTTTTCAATCTCAC-TTTTTACCTTTATAATTAAGGCC
* * * ***
855093 CTTAA-TTTTTCAATCTCAC-TTTTATCTTTATAATTGAGATA
1 CCTAATTTTTTCAATCTCACTTTTTACCTTTATAATTAAGGCC
* * * *
855134 CCTAATTTTTTTAATCTCACGTTCTACATTTATAATTGAA-GCC
1 CCTAATTTTTTCAATCTCACTTTTTACCTTTATAATT-AAGGCC
* * *
855177 CCTAA-TTTTTCTAATCTAACTTTTTTACTTTTATAATTGAGGCC
1 CCTAATTTTTTC-AATCTCAC-TTTTTACCTTTATAATTAAGGCC
* * * **
855221 CTTAATTTTTTTAATCTCAC-TTTTACCTTTATAATTGAGATC
1 CCTAATTTTTTCAATCTCACTTTTTACCTTTATAATTAAGGCC
* * * **
855263 CCTAATTTTTTCAATATCACGTTCTACAGTTATAATTGAA-G-C
1 CCTAATTTTTTCAATCTCACTTTTTACCTTTATAATT-AAGGCC
* * *
855305 CCTAATTTTTT-AATCTCACTTTTTAACTTTATAATTGAGGCG
1 CCTAATTTTTTCAATCTCACTTTTTACCTTTATAATTAAGGCC
* * * * * *
855347 CCTAATTTTTCCAATCTAACTTTTTTACTTTTGTAATTTAGTCC
1 CCTAATTTTTTCAATCTCAC-TTTTTACCTTTATAATTAAGGCC
855391 CCTAATTT
1 CCTAATTT
855399 AATATTTTTC
Statistics
Matches: 508, Mismatches: 106, Indels: 61
0.75 0.16 0.09
Matches are distributed among these distances:
40 1 0.00
41 91 0.18
42 160 0.31
43 188 0.37
44 63 0.12
45 5 0.01
ACGTcount: A:0.26, C:0.19, G:0.06, T:0.48
Consensus pattern (43 bp):
CCTAATTTTTTCAATCTCACTTTTTACCTTTATAATTAAGGCC
Found at i:854836 original size:42 final size:42
Alignment explanation
Indices: 854730--855342 Score: 289
Period size: 42 Copynumber: 14.5 Consensus size: 42
854720 TTCAATCACA
* * * * *
854730 CTTTT-TACCTTAATAATT-AAGGCCCCTAATTTTTTCAATTT
1 CTTTTCTACCTTTATAATTGAA-GTCCTTAATTTTTTAAATCT
* *
854771 CACTTTCTAGCTTTATAATTGAAGTCCTTAATTTTTTAAATCT
1 C-TTTTCTACCTTTATAATTGAAGTCCTTAATTTTTTAAATCT
* * * *
854814 CTTTTCCACCTTTGTAACTGAAGCTCC-TAATTTTTTCAATCT
1 CTTTTCTACCTTTATAATTGAAG-TCCTTAATTTTTTAAATCT
* ** * ** *
854856 CATTTTTTACCTTTATAATTGAAACCCCTAATTTTTTATTTCA
1 C-TTTTCTACCTTTATAATTGAAGTCCTTAATTTTTTAAATCT
* *
854899 C-TTTCTATCTTTATAATTGAAGACCTTAATTTTTT-AATCT
1 CTTTTCTACCTTTATAATTGAAGTCCTTAATTTTTTAAATCT
* * * * * *
854939 CACTTAT-TACCTTTATATTTGAGGTCC-TAATATTTTCAATTCCA
1 --CTTTTCTACCTTTATAATTGAAGTCCTTAAT-TTTTTAAAT-CT
* ** *
854983 CCTTT-TACCTTTATAATTGAAG-CCCCAATTTTTTTTAATCT
1 CTTTTCTACCTTTATAATTGAAGTCCTTAA-TTTTTTAAATCT
* * * * * *
855024 CACTTTT-TACATTTATAATTGAGGCCCTTGATTTTTTCAACTCA
1 --CTTTTCTACCTTTATAATTGAAGTCCTTAATTTTTT-AAATCT
* * * *
855068 CTTTTTTACTTTTATAATTG-AGACTCTTAA-TTTTTCAATCT
1 CTTTTCTACCTTTATAATTGAAGTC-CTTAATTTTTTAAATCT
* * *
855109 CACTTT-TATCTTTATAATTG-AGATACC-TAATTTTTTTAATCT
1 C-TTTTCTACCTTTATAATTGAAG-T-CCTTAATTTTTTAAATCT
** * * *
855151 CACGTTCTACATTTATAATTGAAGCCCCTAATTTTTCT-AATCT
1 C-TTTTCTACCTTTATAATTGAAGTCCTTAATTTTT-TAAATCT
* * * * *
855194 AACTTTTTTACTTTTATAATTGAGGCCCTTAATTTTTTTAATCT
1 --CTTTTCTACCTTTATAATTGAAGTCCTTAATTTTTTAAATCT
* * *
855238 CACTTT-TACCTTTATAATTG-AGATCCCTAATTTTTTCAATATCA
1 C-TTTTCTACCTTTATAATTGAAG-TCCTTAATTTTTT-AA-ATCT
* ** *
855282 C-GTTCTACAGTTATAATTGAAG-CCCTAATTTTTT-AATCT
1 CTTTTCTACCTTTATAATTGAAGTCCTTAATTTTTTAAATCT
*
855321 CACTTTT-TAACTTTATAATTGA
1 --CTTTTCTACCTTTATAATTGA
855343 GGCGCCTAAT
Statistics
Matches: 438, Mismatches: 94, Indels: 80
0.72 0.15 0.13
Matches are distributed among these distances:
39 3 0.01
40 3 0.01
41 72 0.16
42 158 0.36
43 150 0.34
44 51 0.12
45 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.06, T:0.49
Consensus pattern (42 bp):
CTTTTCTACCTTTATAATTGAAGTCCTTAATTTTTTAAATCT
Found at i:854847 original size:85 final size:84
Alignment explanation
Indices: 854730--855377 Score: 477
Period size: 85 Copynumber: 7.7 Consensus size: 84
854720 TTCAATCACA
* * * *
854730 CTTTT-TACCTTAATAATT-AAGGCCCCTAATTTTTTCAATTTCACTTTCTAGCTTTATAATTGA
1 CTTTTCTACCTTTATAATTGAA-GCTCCTAATTTTTTCAATCTCACTTTTTA-CTTTATAATTGA
*
854793 AGTCCTTAATTTTTTAAATCT
64 AGCCCTTAATTTTTTAAATCT
* * * *
854814 CTTTTCCACCTTTGTAACTGAAGCTCCTAATTTTTTCAATCTCATTTTTTACCTTTATAATTGAA
1 CTTTTCTACCTTTATAATTGAAGCTCCTAATTTTTTCAATCTCACTTTTTA-CTTTATAATTGAA
* * ** *
854879 ACCCCTAATTTTTTATTTCA
65 GCCCTTAATTTTTTAAATCT
* * * *
854899 C-TTTCTATCTTTATAATTGAAGAC-CTTAATTTTTT-AATCTCACTTATTACCTTTATATTTGA
1 CTTTTCTACCTTTATAATTGAAG-CTCCTAATTTTTTCAATCTCACTTTTTA-CTTTATAATTGA
* * * * *
854961 GGTCC-TAATATTTTCAATTCCA
64 AGCCCTTAAT-TTTTTAAAT-CT
* * *
854983 CCTTT-TACCTTTATAATTGAAGC-CCCAATTTTTTTTAATCTCACTTTTTACATTTATAATTGA
1 CTTTTCTACCTTTATAATTGAAGCTCCTAA-TTTTTTCAATCTCACTTTTTAC-TTTATAATTGA
* * * *
855046 GGCCCTTGATTTTTTCAACTCA
64 AGCCCTTAATTTTTT-AAATCT
* * *
855068 CTTTTTTACTTTTATAATTG-AGACTCTTAA-TTTTTCAATCTCAC-TTTTATCTTTATAATTGA
1 CTTTTCTACCTTTATAATTGAAG-CTCCTAATTTTTTCAATCTCACTTTTTA-CTTTATAATTGA
** *
855130 GATACC-TAATTTTTTTAATCT
64 -AGCCCTTAATTTTTTAAATCT
** * * *
855151 CACGTTCTACATTTATAATTGAAGCCCCTAA-TTTTTCTAATCTAACTTTTTTACTTTTATAATT
1 C-TTTTCTACCTTTATAATTGAAGCTCCTAATTTTTTC-AATCTCAC-TTTTTAC-TTTATAATT
* *
855215 GAGGCCCTTAATTTTTTTAATCT
62 GAAGCCCTTAATTTTTTAAATCT
* * * * * *
855238 CACTTT-TACCTTTATAATTG-AGATCCCTAATTTTTTCAATATCACGTTCTACAGTTATAATTG
1 C-TTTTCTACCTTTATAATTGAAGCT-CCTAATTTTTTCAATCTCACTTTTTAC-TTTATAATTG
855301 AAGCCC-TAATTTTTT-AATCT
63 AAGCCCTTAATTTTTTAAATCT
* * * * *
855321 CACTTTT-TAACTTTATAATTGAGGCGCCTAATTTTTCCAATCTAACTTTTTTACTTT
1 --CTTTTCTACCTTTATAATTGAAGCTCCTAATTTTTTCAATCTCAC-TTTTTACTTT
855378 TGTAATTTAG
Statistics
Matches: 454, Mismatches: 81, Indels: 58
0.77 0.14 0.10
Matches are distributed among these distances:
82 4 0.01
83 46 0.10
84 152 0.33
85 158 0.35
86 49 0.11
87 45 0.10
ACGTcount: A:0.26, C:0.19, G:0.06, T:0.49
Consensus pattern (84 bp):
CTTTTCTACCTTTATAATTGAAGCTCCTAATTTTTTCAATCTCACTTTTTACTTTATAATTGAAG
CCCTTAATTTTTTAAATCT
Found at i:855357 original size:170 final size:168
Alignment explanation
Indices: 854687--855398 Score: 635
Period size: 170 Copynumber: 4.2 Consensus size: 168
854677 ACAATGATGA
* * * * *
854687 TTTTTTACACTTATAATTGAGTA-TCCTAATTTTTTCAATCACACTTTTTACCTTAATAATTAAG
1 TTTTTTACATTTATAATTGAG-ACCCCTAATTTTTTCAATCTCACTTTTTACCTTTATAATTGA-
* * *
854751 GCCCCTAATTTTTTCAATTTCACTTTCTAGCTTTATAATTGAAGTCCTTAATTTTTTAAATCT--
64 GACCCTAATTTTTTCAATCTCAC-TTCTAGCTTTATAATTGAAG-CCCTAATTTTTT-AATCTCA
* * * * *
854814 CTTTTCCACCTTTGTAACTGAAGCTCCTAATTTTT-TCAATCTCA-
126 CTTTT-TAACTTTATAATTGAAGC-CCTAATTTTTCT-AATCTAAC
* * * * *
854858 TTTTTTACCTTTATAATTGAAACCCCTAATTTTTT--ATTTCACTTTCTATCTTTATAATTGAAG
1 TTTTTTACATTTATAATTGAGACCCCTAATTTTTTCAATCTCACTTTTTACCTTTATAATTG-AG
* * * * * * *
854921 ACCTTAATTTTTT-AATCTCACTTATTACCTTTATATTTGAGGTCCTAATATTTTCAAT-TCCAC
65 ACCCTAATTTTTTCAATCTCACTT-CTAGCTTTATAATTGAAGCCCTAAT-TTTTTAATCT-CAC
* * * * *
854984 CTTTTACCTTTATAATTGAAGCCCCAATTTTTTTTAATCTCAC
127 TTTTTAACTTTATAATTGAAGCCCTAA-TTTTTCTAATCTAAC
* * * *
855027 -TTTTTACATTTATAATTGAGGCCCTTGATTTTTTCAA-CTCACTTTTTTACTTTTATAATTGAG
1 TTTTTTACATTTATAATTGAGACCCCTAATTTTTTCAATCTCAC-TTTTTACCTTTATAATTGAG
* * * **
855090 ACTCTTAA-TTTTTCAATCTCACTTTTATCTTTATAATTGAGATACCTAATTTTTTTAATCTCAC
65 AC-CCTAATTTTTTCAATCTCACTTCTAGCTTTATAATTGA-AGCCCTAA-TTTTTTAATCTCAC
* *
855154 GTTCT-ACATTTATAATTGAAGCCCCTAATTTTTCTAATCTAAC
127 TTTTTAAC-TTTATAATTGAAG-CCCTAATTTTTCTAATCTAAC
* * * *
855197 TTTTTTACTTTTATAATTGAGGCCCTTAATTTTTTTAATCTCAC-TTTTACCTTTATAATTGAGA
1 TTTTTTACATTTATAATTGAGACCCCTAATTTTTTCAATCTCACTTTTTACCTTTATAATTGAGA
* *
855261 TCCCTAATTTTTTCAATATCACGTTCTA-CAGTTATAATTGAAGCCCTAATTTTTTAATCTCACT
66 -CCCTAATTTTTTCAATCTCAC-TTCTAGC-TTTATAATTGAAGCCCTAATTTTTTAATCTCACT
* *
855325 TTTTAACTTTATAATTGAGGCGCCTAATTTTTCCAATCTAAC
128 TTTTAACTTTATAATTGAAGC-CCTAATTTTTCTAATCTAAC
* * * *
855367 TTTTTTACTTTTGTAATTTAGTCCCCTAATTT
1 TTTTTTACATTTATAATTGAGACCCCTAATTT
855399 AATATTTTTC
Statistics
Matches: 449, Mismatches: 64, Indels: 57
0.79 0.11 0.10
Matches are distributed among these distances:
166 1 0.00
167 14 0.03
168 81 0.18
169 65 0.14
170 176 0.39
171 93 0.21
172 19 0.04
ACGTcount: A:0.27, C:0.19, G:0.06, T:0.49
Consensus pattern (168 bp):
TTTTTTACATTTATAATTGAGACCCCTAATTTTTTCAATCTCACTTTTTACCTTTATAATTGAGA
CCCTAATTTTTTCAATCTCACTTCTAGCTTTATAATTGAAGCCCTAATTTTTTAATCTCACTTTT
TAACTTTATAATTGAAGCCCTAATTTTTCTAATCTAAC
Found at i:856239 original size:38 final size:38
Alignment explanation
Indices: 856187--856363 Score: 164
Period size: 38 Copynumber: 4.6 Consensus size: 38
856177 TGCTAATATT
* * *
856187 TTTATTAATAAAATAGGTTGCGCCTAAGAATGTTATGA
1 TTTACTAAGAAAATAGGTTGCGCCCAAGAATGTTATGA
856225 TTTACTAAGAAAATAGGTTGCGCCCAAGAATGTTATGA
1 TTTACTAAGAAAATAGGTTGCGCCCAAGAATGTTATGA
* ** *
856263 TTCACTAAGAAAATAGGTTGCGATCTGTAATGTAAAGTTAAT-A
1 TTTACTAAGAAAATAGGTTGCG--C-CCAA-G-AATGTT-ATGA
* * * *
856306 TTT-TTAATAAAATATGTTGCGCCCAAGAATGTCATG-
1 TTTACTAAGAAAATAGGTTGCGCCCAAGAATGTTATGA
856342 TTTCACTAAG-AAATAGGTTGCG
1 TTT-ACTAAGAAAATAGGTTGCG
856364 ATATGTTATG
Statistics
Matches: 112, Mismatches: 18, Indels: 19
0.75 0.12 0.13
Matches are distributed among these distances:
36 5 0.04
37 15 0.13
38 60 0.54
39 2 0.02
40 2 0.02
41 2 0.02
42 16 0.14
43 8 0.07
44 2 0.02
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.33
Consensus pattern (38 bp):
TTTACTAAGAAAATAGGTTGCGCCCAAGAATGTTATGA
Found at i:862846 original size:27 final size:27
Alignment explanation
Indices: 862815--862882 Score: 100
Period size: 27 Copynumber: 2.5 Consensus size: 27
862805 GAAGATGAAG
* *
862815 AAATGAGAGAGAAAAAGAAAATGTTAC
1 AAATGAGAGAGAAAAAGAAAAAGTTAA
*
862842 AAATGAAAGAGAAAAAGAAAAAGTTAA
1 AAATGAGAGAGAAAAAGAAAAAGTTAA
*
862869 AAATAAGAGAGAAA
1 AAATGAGAGAGAAA
862883 TGGGTGATAG
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.66, C:0.01, G:0.21, T:0.12
Consensus pattern (27 bp):
AAATGAGAGAGAAAAAGAAAAAGTTAA
Found at i:865179 original size:55 final size:55
Alignment explanation
Indices: 865117--865227 Score: 213
Period size: 55 Copynumber: 2.0 Consensus size: 55
865107 GGATAAGTCT
*
865117 TTGATAAATCTTCTATAGAATCCAACATGTCCAAGAAAACTTCTTATACCCTTGA
1 TTGATAAAACTTCTATAGAATCCAACATGTCCAAGAAAACTTCTTATACCCTTGA
865172 TTGATAAAACTTCTATAGAATCCAACATGTCCAAGAAAACTTCTTATACCCTTGA
1 TTGATAAAACTTCTATAGAATCCAACATGTCCAAGAAAACTTCTTATACCCTTGA
865227 T
1 T
865228 CGAAATTGGT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.37, C:0.22, G:0.09, T:0.32
Consensus pattern (55 bp):
TTGATAAAACTTCTATAGAATCCAACATGTCCAAGAAAACTTCTTATACCCTTGA
Found at i:865213 original size:30 final size:30
Alignment explanation
Indices: 865126--865215 Score: 84
Period size: 30 Copynumber: 3.2 Consensus size: 30
865116 TTTGATAAAT
865126 CTTCTATAGAATCCAACATGTCCAAGAAAA
1 CTTCTATAGAATCCAACATGTCCAAGAAAA
* * ** *
865156 CTTCT-TA-TA-CC--CTTGAT-TGATAAAA
1 CTTCTATAGAATCCAACATG-TCCAAGAAAA
865181 CTTCTATAGAATCCAACATGTCCAAGAAAA
1 CTTCTATAGAATCCAACATGTCCAAGAAAA
865211 CTTCT
1 CTTCT
865216 TATACCCTTG
Statistics
Matches: 43, Mismatches: 10, Indels: 14
0.64 0.15 0.21
Matches are distributed among these distances:
25 13 0.30
26 3 0.07
27 3 0.07
28 3 0.07
29 3 0.07
30 18 0.42
ACGTcount: A:0.38, C:0.23, G:0.09, T:0.30
Consensus pattern (30 bp):
CTTCTATAGAATCCAACATGTCCAAGAAAA
Found at i:874688 original size:22 final size:22
Alignment explanation
Indices: 874663--874710 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
874653 AAGATATAGT
* *
874663 AAAAAACACACACAAAAAGAAA
1 AAAAAACAAACAAAAAAAGAAA
*
874685 AAAAAACAAAGAAAAAAAGAAA
1 AAAAAACAAACAAAAAAAGAAA
874707 AAAA
1 AAAA
874711 GAAAGAAGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.83, C:0.10, G:0.06, T:0.00
Consensus pattern (22 bp):
AAAAAACAAACAAAAAAAGAAA
Found at i:874699 original size:20 final size:20
Alignment explanation
Indices: 874676--874726 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
874666 AAACACACAC
874676 AAAAAGAAAAAAAAACAAAG
1 AAAAAGAAAAAAAAACAAAG
*
874696 AAAAA-AAGAAAAAAAGAAAG
1 AAAAAGAA-AAAAAAACAAAG
874716 AAGAAAGAAAA
1 AA-AAAGAAAA
874727 CAAATCTGAC
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 2 0.07
20 18 0.67
21 5 0.19
22 2 0.07
ACGTcount: A:0.84, C:0.02, G:0.14, T:0.00
Consensus pattern (20 bp):
AAAAAGAAAAAAAAACAAAG
Found at i:874703 original size:8 final size:8
Alignment explanation
Indices: 874676--874714 Score: 55
Period size: 8 Copynumber: 5.1 Consensus size: 8
874666 AAACACACAC
874676 AAAAAG-A
1 AAAAAGAA
874683 AAAAA-AA
1 AAAAAGAA
*
874690 ACAAAGAA
1 AAAAAGAA
874698 AAAAAGAA
1 AAAAAGAA
874706 AAAAAGAA
1 AAAAAGAA
874714 A
1 A
874715 GAAGAAAGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
7 10 0.36
8 18 0.64
ACGTcount: A:0.87, C:0.03, G:0.10, T:0.00
Consensus pattern (8 bp):
AAAAAGAA
Found at i:881519 original size:2 final size:2
Alignment explanation
Indices: 881502--881565 Score: 112
Period size: 2 Copynumber: 32.5 Consensus size: 2
881492 ACATAATAAC
*
881502 TA TA GA TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
881543 TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA T
881566 TTATTTATGA
Statistics
Matches: 59, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
1 1 0.02
2 58 0.98
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (2 bp):
TA
Found at i:886136 original size:24 final size:26
Alignment explanation
Indices: 886090--886140 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
886080 TTATTATCGG
*
886090 AATAACTATATATATATATATATGAA
1 AATAACTATATATATATACATATGAA
*
886116 AATAACTATAT-TATA-CCATATGAA
1 AATAACTATATATATATACATATGAA
886140 A
1 A
886141 TTAGCATCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 8 0.35
25 4 0.17
26 11 0.48
ACGTcount: A:0.53, C:0.08, G:0.04, T:0.35
Consensus pattern (26 bp):
AATAACTATATATATATACATATGAA
Found at i:887513 original size:17 final size:18
Alignment explanation
Indices: 887476--887514 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
887466 GTGAGGATTA
887476 GGCAGTGGTCCAGCATAG
1 GGCAGTGGTCCAGCATAG
887494 GGCAGTGGTCCAGCAT-G
1 GGCAGTGGTCCAGCATAG
887511 GGCA
1 GGCA
887515 TCTGGAAATG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 5 0.24
18 16 0.76
ACGTcount: A:0.21, C:0.23, G:0.41, T:0.15
Consensus pattern (18 bp):
GGCAGTGGTCCAGCATAG
Found at i:895679 original size:1 final size:1
Alignment explanation
Indices: 895675--895732 Score: 53
Period size: 1 Copynumber: 58.0 Consensus size: 1
895665 AAACACACAC
* * * * * * *
895675 AAAAAGAAAGAAAACAAAAGAAAAAAAAAGAAAAAAAAGAAAAAAAAAGAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
895733 GAAGAAAGAA
Statistics
Matches: 43, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 43 1.00
ACGTcount: A:0.88, C:0.02, G:0.10, T:0.00
Consensus pattern (1 bp):
A
Found at i:895684 original size:4 final size:4
Alignment explanation
Indices: 895677--895754 Score: 59
Period size: 4 Copynumber: 21.8 Consensus size: 4
895667 ACACACACAA
* *
895677 AAAG AAAG AAA- ACA- AAAG AAA- AAA- AAAG AAAAA AAAG AAA- AAA-
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG -AAAG AAAG AAAG AAAG
895720 AAAG AAA- AAA- AAAG -AAG AAAG AAAG -AAG AAAG AAA
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAA
895755 ACAAATCTGA
Statistics
Matches: 63, Mismatches: 4, Indels: 14
0.78 0.05 0.17
Matches are distributed among these distances:
3 28 0.44
4 32 0.51
5 3 0.05
ACGTcount: A:0.83, C:0.01, G:0.15, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:895694 original size:10 final size:10
Alignment explanation
Indices: 895675--895746 Score: 101
Period size: 10 Copynumber: 7.2 Consensus size: 10
895665 AAACACACAC
*
895675 AAAAAGAAAG
1 AAAAAAAAAG
*
895685 AAAACAAAAG
1 AAAAAAAAAG
895695 AAAAAAAAAG
1 AAAAAAAAAG
895705 -AAAAAAAAG
1 AAAAAAAAAG
895714 AAAAAAAAAG
1 AAAAAAAAAG
895724 AAAAAAAAAG
1 AAAAAAAAAG
*
895734 AAGAAAGAAAG
1 AA-AAAAAAAG
895745 AA
1 AA
895747 GAAAGAAAAC
Statistics
Matches: 56, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
9 9 0.16
10 38 0.68
11 9 0.16
ACGTcount: A:0.85, C:0.01, G:0.14, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:895708 original size:29 final size:30
Alignment explanation
Indices: 895675--895755 Score: 119
Period size: 29 Copynumber: 2.6 Consensus size: 30
895665 AAACACACAC
*
895675 AAAAAGAAAGAAAACAAAAGAAAAAAAAAG
1 AAAAAGAAAGAAAAAAAAAGAAAAAAAAAG
895705 AAAAA-AAAGAAAAAAAAAGAAAAAAAAAG
1 AAAAAGAAAGAAAAAAAAAGAAAAAAAAAG
895734 AAGAAAGAAAGAAGAAAGAAAA
1 AA-AAAGAAAGAA-AAA-AAAA
895756 CAAATCTGAC
Statistics
Matches: 46, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
29 25 0.54
30 8 0.17
31 6 0.13
32 3 0.07
33 4 0.09
ACGTcount: A:0.84, C:0.01, G:0.15, T:0.00
Consensus pattern (30 bp):
AAAAAGAAAGAAAAAAAAAGAAAAAAAAAG
Found at i:898293 original size:232 final size:233
Alignment explanation
Indices: 897600--898576 Score: 1517
Period size: 233 Copynumber: 4.2 Consensus size: 233
897590 GGGTCATCTG
* * *
897600 TAAGTCTTTCGAGCCATCCATAAGACCTTTGGGCAGGATGTTTTCACATGTCTATC-AAATATGA
1 TAAGTCCTTCGGGCCATCCATAAGACCTTTGGGCAGGATGTTTTCACATGTCTATCGAAAAATGA
* *
897664 GAAAGGTTTCTCATTTAAATCTGAAAATTCAAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTA
66 GAAAGGTTTCTCATTCAAATCTGAAAATT-GAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTA
* *
897729 TTAAACTATTTCCAAAATTTATAAGTCCTTCGGGCCATTAGTAAGTCTTTCGAGCATGATGCTTA
130 GTAAACTATTTCCAAAATTTATAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTA
* * *
897794 AATCCTTTGGGTCATCTGTAAGACTTTCGAGCAATATGA
195 AATCCTTCGGGTCATCTGTAAGTCTTTCGAGCAAGATGA
* ** * * * *
897833 TAAGTTCTTCTAGACATCCATAAGACCTTTCGGTAGGATGTTTTCACATGTCTATCGAAATATGA
1 TAAGTCCTTCGGGCCATCCATAAGACCTTTGGGCAGGATGTTTTCACATGTCTATCGAAAAATGA
* * * * *
897898 GAAATGTTTCTCATTTAAATCTGAAATTTGAAATTTTTGAAAAGTAAGAAAAGTTTCTTGCCTAG
66 GAAAGGTTTCTCATTCAAATCTGAAAATTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAG
* * * * *
897963 TAAACTATTTCCAAAATTTATAAGTCATACGAGCCACCAGTAAGTCTTTCGATCATGATGCTTAA
131 TAAACTATTTCCAAAATTTATAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAA
898028 ATCCTTCGGGTCATCTGTAAGTCTTTCGAGCAAGATGA
196 ATCCTTCGGGTCATCTGTAAGTCTTTCGAGCAAGATGA
** *
898066 TAAGTTTTTCGGGCCATCCATAAGACCTTTGGGCAGGATGTTTTCACATGTCTCTCGAAAAATGA
1 TAAGTCCTTCGGGCCATCCATAAGACCTTTGGGCAGGATGTTTTCACATGTCTATCGAAAAATGA
*
898131 GAAAGGTTTCTCATTCAAATCTAAAAATTGAAATTTTTGAAAAGTAAGAAA-GTTTCTTACCTAG
66 GAAAGGTTTCTCATTCAAATCTGAAAATTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAG
*
898195 TAAACTATTTCCAAAATCTATAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAA
131 TAAACTATTTCCAAAATTTATAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAA
* *
898260 ATCCTTCGGGTCATCTATAAGTCTTTTGAGCAAGATGA
196 ATCCTTCGGGTCATCTGTAAGTCTTTCGAGCAAGATGA
* *
898298 TAAGTCCTTCGGGCCATCCATAAGACCTTTGGGCAGGATGTTTTCACACGTCTCTCGAAAAATGA
1 TAAGTCCTTCGGGCCATCCATAAGACCTTTGGGCAGGATGTTTTCACATGTCTATCGAAAAATGA
* ** * * *
898363 GAAATGTTTCTTGTTCAAATTTGAAAATTGAGATTTTTGAAAAGTAAGAAAGGTTTCTTACATAG
66 GAAAGGTTTCTCATTCAAATCTGAAAATTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAG
*
898428 TAAACTATTTCTAAAATTTATAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAA
131 TAAACTATTTCCAAAATTTATAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAA
898493 ATCCTTCGGGTCATCTGTAAGTCTTTCGAGCAAGATGA
196 ATCCTTCGGGTCATCTGTAAGTCTTTCGAGCAAGATGA
* **
898531 TAAGTCCTTCGGGCCATCCATAAGACCTTTAGGCAAAATGTTTTCA
1 TAAGTCCTTCGGGCCATCCATAAGACCTTTGGGCAGGATGTTTTCA
898577 TAGGTCCCTA
Statistics
Matches: 683, Mismatches: 59, Indels: 4
0.92 0.08 0.01
Matches are distributed among these distances:
232 214 0.31
233 434 0.64
234 35 0.05
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (233 bp):
TAAGTCCTTCGGGCCATCCATAAGACCTTTGGGCAGGATGTTTTCACATGTCTATCGAAAAATGA
GAAAGGTTTCTCATTCAAATCTGAAAATTGAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAG
TAAACTATTTCCAAAATTTATAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAA
ATCCTTCGGGTCATCTGTAAGTCTTTCGAGCAAGATGA
Found at i:898321 original size:41 final size:42
Alignment explanation
Indices: 898214--898321 Score: 139
Period size: 42 Copynumber: 2.6 Consensus size: 42
898204 TCCAAAATCT
*
898214 ATAAGTCCTTCGGGCCAT-CAGTAAGTCTTTCGAGCATGATGC
1 ATAAGTCCTTCGGGCCATCCA-TAAGTCTTTCGAGCAAGATGC
* * * * *
898256 TTAAATCCTTCGGGTCATCTATAAGTCTTTTGAGCAAGATG-
1 ATAAGTCCTTCGGGCCATCCATAAGTCTTTCGAGCAAGATGC
898297 ATAAGTCCTTCGGGCCATCCATAAG
1 ATAAGTCCTTCGGGCCATCCATAAG
898322 ACCTTTGGGC
Statistics
Matches: 55, Mismatches: 10, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
41 21 0.38
42 33 0.60
43 1 0.02
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (42 bp):
ATAAGTCCTTCGGGCCATCCATAAGTCTTTCGAGCAAGATGC
Found at i:898487 original size:465 final size:466
Alignment explanation
Indices: 897600--898576 Score: 1544
Period size: 465 Copynumber: 2.1 Consensus size: 466
897590 GGGTCATCTG
* *
897600 TAAGTCTTTCGAGCCATCCATAAGACCTTTGGGCAGGATGTTTTCACATGTCTATCAAATATGAG
1 TAAGTCTTTCGGGCCATCCATAAGACCTTTGGGCAGGATGTTTTCACATGTCTATCAAAAATGAG
* * *
897665 AAAGGTTTCTCATTTAAATCTGAAAATTCAAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAT
66 AAAGGTTTCTCATTCAAATCTAAAAATTCAAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAG
* *
897730 TAAACTATTTCCAAAATTTATAAGTCCTTCGGGCCATTAGTAAGTCTTTCGAGCATGATGCTTAA
131 TAAACTATTTCCAAAATCTATAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAA
* * * * *
897795 ATCCTTTGGGTCATCTGTAAGACTTTCGAGCAATATGATAAGTTCTTCTAGACATCCATAAGACC
196 ATCCTTCGGGTCATCTATAAGACTTTCGAGCAAGATGATAAGTCCTTCGAGACATCCATAAGACC
* * * * *
897860 TTTCGGTAGGATGTTTTCACATGTCTATCGAAATATGAGAAATGTTTCTCATTTAAATCTGAAAT
261 TTTCGGCAGGATGTTTTCACACGTCTATCGAAAAATGAGAAATGTTTCTCATTCAAATCTGAAAA
* *
897925 TTGAAATTTTTGAAAAGTAAGAAAAGTTTCTTGCCTAGTAAACTATTTCCAAAATTTATAAGTCA
326 TTGAAATTTTTGAAAAGTAAGAAAAGTTTCTTACATAGTAAACTATTTCCAAAATTTATAAGTCA
*
897990 TACGAGCCACCAGTAAGTCTTTCGATCATGATGCTTAAATCCTTCGGGTCATCTGTAAGTCTTTC
391 TACGAGCCACCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGTCTTTC
898055 GAGCAAGATGA
456 GAGCAAGATGA
* *
898066 TAAGTTTTTCGGGCCATCCATAAGACCTTTGGGCAGGATGTTTTCACATGTCTCTCGAAAAATGA
1 TAAGTCTTTCGGGCCATCCATAAGACCTTTGGGCAGGATGTTTTCACATGTCTATC-AAAAATGA
*
898131 GAAAGGTTTCTCATTCAAATCTAAAAATT-GAAATTTTTGAAAAGTAAGAAA-GTTTCTTACCTA
65 GAAAGGTTTCTCATTCAAATCTAAAAATTCAAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTA
898194 GTAAACTATTTCCAAAATCTATAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTA
130 GTAAACTATTTCCAAAATCTATAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTA
* * * *
898259 AATCCTTCGGGTCATCTATAAGTCTTTTGAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGAC
195 AATCCTTCGGGTCATCTATAAGACTTTCGAGCAAGATGATAAGTCCTTCGAGACATCCATAAGAC
* * ** *
898324 CTTTGGGCAGGATGTTTTCACACGTCTCTCGAAAAATGAGAAATGTTTCTTGTTCAAATTTGAAA
260 CTTTCGGCAGGATGTTTTCACACGTCTATCGAAAAATGAGAAATGTTTCTCATTCAAATCTGAAA
* * *
898389 ATTGAGATTTTTGAAAAGTAAGAAAGGTTTCTTACATAGTAAACTATTTCTAAAATTTATAAGTC
325 ATTGAAATTTTTGAAAAGTAAGAAAAGTTTCTTACATAGTAAACTATTTCCAAAATTTATAAGTC
* * * *
898454 CTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGTCTTT
390 ATACGAGCCACCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGTCTTT
898519 CGAGCAAGATGA
455 CGAGCAAGATGA
* * **
898531 TAAGTCCTTCGGGCCATCCATAAGACCTTTAGGCAAAATGTTTTCA
1 TAAGTCTTTCGGGCCATCCATAAGACCTTTGGGCAGGATGTTTTCA
898577 TAGGTCCCTA
Statistics
Matches: 466, Mismatches: 44, Indels: 3
0.91 0.09 0.01
Matches are distributed among these distances:
465 358 0.77
466 74 0.16
467 34 0.07
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (466 bp):
TAAGTCTTTCGGGCCATCCATAAGACCTTTGGGCAGGATGTTTTCACATGTCTATCAAAAATGAG
AAAGGTTTCTCATTCAAATCTAAAAATTCAAAATTTTTGAAAAGTAAGAAAGGTTTCTTACCTAG
TAAACTATTTCCAAAATCTATAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAA
ATCCTTCGGGTCATCTATAAGACTTTCGAGCAAGATGATAAGTCCTTCGAGACATCCATAAGACC
TTTCGGCAGGATGTTTTCACACGTCTATCGAAAAATGAGAAATGTTTCTCATTCAAATCTGAAAA
TTGAAATTTTTGAAAAGTAAGAAAAGTTTCTTACATAGTAAACTATTTCCAAAATTTATAAGTCA
TACGAGCCACCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTGTAAGTCTTTC
GAGCAAGATGA
Found at i:898499 original size:42 final size:41
Alignment explanation
Indices: 898447--898548 Score: 141
Period size: 42 Copynumber: 2.5 Consensus size: 41
898437 TCTAAAATTT
* *
898447 ATAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATG
1 ATAAATCCTTCGGGCCATCAGTAAGTCTTTCGAGCAAGATG
* * *
898488 CTTAAATCCTTCGGGTCATCTGTAAGTCTTTCGAGCAAGATG
1 -ATAAATCCTTCGGGCCATCAGTAAGTCTTTCGAGCAAGATG
*
898530 ATAAGTCCTTCGGGCCATC
1 ATAAATCCTTCGGGCCATC
898549 CATAAGACCT
Statistics
Matches: 52, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
41 16 0.31
42 36 0.69
ACGTcount: A:0.24, C:0.24, G:0.23, T:0.30
Consensus pattern (41 bp):
ATAAATCCTTCGGGCCATCAGTAAGTCTTTCGAGCAAGATG
Found at i:898761 original size:3 final size:3
Alignment explanation
Indices: 898753--898784 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
898743 ATATTACCAC
898753 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
898785 AATACATTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:900537 original size:150 final size:150
Alignment explanation
Indices: 900250--900529 Score: 400
Period size: 150 Copynumber: 1.9 Consensus size: 150
900240 ATGTTTATTT
* * * * *
900250 TCAAAGATTGGTGGCGACTCCTCAAACCATATTTTTTTACTAACCGGTCGTTCCAAGAATTATTT
1 TCAAAAATTAGTGGCGACTCCTCAAACCACATTTTTTTACTAACCGATCATTCCAAGAATTATTT
* *
900315 TAGAAACGGGACCCCCTTTTTCCCCCTCCGTGAAAAGAATATTTCGACACCATTCTTATTCAAGC
66 TAGAAACGGGACCCCCTTTTTCCCCCTCAGTGAAAAGAACATTTCGACACCATTCTTATTCAAGC
900380 AATGTGGACACCATCCCTAA
131 AATGTGGACACCATCCCTAA
*
900400 TCAAAAATTAGTGGTGACTCCTCAAACCACATTTTTTTACTAACCGATCATTCCAAGAATTATTT
1 TCAAAAATTAGTGGCGACTCCTCAAACCACATTTTTTTACTAACCGATCATTCCAAGAATTATTT
* * ** ** * *
900465 TCGAAATGGGACCCCCTTTTTTCCCTTTCAG-GAAAAGTCCGTTTTGACACCATTCTTATTCAAG
66 TAGAAACGGGACCCCC-TTTTTCCCCCTCAGTGAAAAGAACATTTCGACACCATTCTTATTCAAG
900529 C
130 C
900530 GGTGTGGAGA
Statistics
Matches: 113, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
150 102 0.90
151 11 0.10
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.32
Consensus pattern (150 bp):
TCAAAAATTAGTGGCGACTCCTCAAACCACATTTTTTTACTAACCGATCATTCCAAGAATTATTT
TAGAAACGGGACCCCCTTTTTCCCCCTCAGTGAAAAGAACATTTCGACACCATTCTTATTCAAGC
AATGTGGACACCATCCCTAA
Found at i:904121 original size:44 final size:44
Alignment explanation
Indices: 904058--904145 Score: 167
Period size: 44 Copynumber: 2.0 Consensus size: 44
904048 TAGAGCCTAC
904058 CCTGGGACTTGATGTTTTGTGATTTTCTAACAAAATTGTATGTT
1 CCTGGGACTTGATGTTTTGTGATTTTCTAACAAAATTGTATGTT
*
904102 CCTGGTACTTGATGTTTTGTGATTTTCTAACAAAATTGTATGTT
1 CCTGGGACTTGATGTTTTGTGATTTTCTAACAAAATTGTATGTT
904146 TTCTCTACTT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.23, C:0.11, G:0.19, T:0.47
Consensus pattern (44 bp):
CCTGGGACTTGATGTTTTGTGATTTTCTAACAAAATTGTATGTT
Found at i:909227 original size:20 final size:18
Alignment explanation
Indices: 909190--909239 Score: 55
Period size: 20 Copynumber: 2.6 Consensus size: 18
909180 ATCTAAATCA
*
909190 TTTTTCAAAGATTCATTTT
1 TTTTTCAAA-AATCATTTT
909209 GTTTTTCAAAAATCAATTTT
1 -TTTTTCAAAAATC-ATTTT
909229 TTCTTTCAAAA
1 TT-TTTCAAAA
909240 CCAAATCATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
19 5 0.19
20 22 0.81
ACGTcount: A:0.32, C:0.12, G:0.04, T:0.52
Consensus pattern (18 bp):
TTTTTCAAAAATCATTTT
Found at i:912374 original size:19 final size:18
Alignment explanation
Indices: 912338--912386 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
912328 CTCTAAATCA
**
912338 TTTTTCAAAGATTCATTTT
1 TTTTTCAAA-ATAAATTTT
912357 GTTTTTCAAAATAAATTTT
1 -TTTTTCAAAATAAATTTT
912376 TTCTTTCAAAA
1 TT-TTTCAAAA
912387 CCAAATCATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 2 0.08
19 15 0.58
20 9 0.35
ACGTcount: A:0.33, C:0.10, G:0.04, T:0.53
Consensus pattern (18 bp):
TTTTTCAAAATAAATTTT
Found at i:917338 original size:22 final size:21
Alignment explanation
Indices: 917304--917344 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
917294 GGCCATTTCT
917304 AGCCGTTAAGGGAGTGATTTGA
1 AGCCGTTAAGGGA-TGATTTGA
**
917326 AGCCGTTTGGGGATGATTT
1 AGCCGTTAAGGGATGATTT
917345 CTCTAGAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.22, C:0.10, G:0.37, T:0.32
Consensus pattern (21 bp):
AGCCGTTAAGGGATGATTTGA
Found at i:917505 original size:20 final size:21
Alignment explanation
Indices: 917457--917508 Score: 81
Period size: 20 Copynumber: 2.6 Consensus size: 21
917447 ATTAGGTCTG
*
917457 ATGGTATCAAT-TCTAAGCCT
1 ATGGTATCGATATCTAAGCCT
917477 ATGGTATCGATAT-TAAGCCT
1 ATGGTATCGATATCTAAGCCT
917497 ATGGTATCGATA
1 ATGGTATCGATA
917509 CTACTATGTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 29 0.97
21 1 0.03
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (21 bp):
ATGGTATCGATATCTAAGCCT
Found at i:918113 original size:77 final size:76
Alignment explanation
Indices: 917954--918205 Score: 276
Period size: 77 Copynumber: 3.3 Consensus size: 76
917944 CGTAACTTGC
* * *
917954 TTTC-TAACTGAACCAT-ATCATTCTTGTGCGCAACCCATTTTA-TAATAAAAATATTGACATTC
1 TTTCTTAAC-GAACCATGA-CATTCTTGGGCGCAAACCATTTTATTAATAAAAATATTAACATTC
* *
918016 CATATCTTAACATA
64 CATAT-TCAACCTA
* * * *
918030 TTTCTTAACGAACCATGACATTCTTGGGAGAAAACCATTTTATTAACAAAAATATTAATATTCCA
1 TTTCTTAACGAACCATGACATTCTTGGGCGCAAACCATTTTATTAATAAAAATATTAACATTCCA
*
918095 GATTGCAACCTA
66 TATT-CAACCTA
** * * * *
918107 TTTCTTAGTGAACCATGACATTATTGGGCGCAATCTATTTTATTATTAAAAATATTAACATTCCA
1 TTTCTTAACGAACCATGACATTCTTGGGCGCAAACCATTTTATTAATAAAAATATTAACATTCCA
*
918172 TATCACAACCTA
66 TAT-TCAACCTA
*
918184 TTTCTTAATGAACCATGACATT
1 TTTCTTAACGAACCATGACATT
918206 TTTAGGTGCA
Statistics
Matches: 148, Mismatches: 23, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
76 32 0.22
77 116 0.78
ACGTcount: A:0.36, C:0.19, G:0.09, T:0.36
Consensus pattern (76 bp):
TTTCTTAACGAACCATGACATTCTTGGGCGCAAACCATTTTATTAATAAAAATATTAACATTCCA
TATTCAACCTA
Found at i:922658 original size:101 final size:100
Alignment explanation
Indices: 922516--922768 Score: 321
Period size: 101 Copynumber: 2.5 Consensus size: 100
922506 TAAAAAATTA
* * * *
922516 AAGAATTCAAGAACAAGAAAAGCCCATATTTGCAATCACTAAAATCAAATAATACCAAGAAAAAT
1 AAGAAATCAAGAACAAGAAAAACCCAGATTTGCAATCACTAAAATCAAATAATACCAAGAAAAAC
** *
922581 ATAAATA-CTCTGAGTATCATTAAAAAGTTGAAACATC
66 ATAAATAGCTCT-ACAATC--TAAAAAGTTGAAAAATC
* *
922618 AAGAAATCAAGAACAA-AAAAACCCAGATTTGCAATCACTAAAATCGAATAGTACCAAGAAAAAC
1 AAGAAATCAAGAACAAGAAAAACCCAGATTTGCAATCACTAAAATCAAATAATACCAAGAAAAAC
* * *
922682 ATAATTAGTTCTACAATCTACAAAGTTGAAAAATC
66 ATAAATAGCTCTACAATCTAAAAAGTTGAAAAATC
* * * *
922717 AAGAAACCAAGAACAAGAAAACCCCAGATTTGCAATCACGAAAATCAGATAA
1 AAGAAATCAAGAACAAGAAAAACCCAGATTTGCAATCACTAAAATCAAATAA
922769 AATAATGTAT
Statistics
Matches: 131, Mismatches: 18, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
99 30 0.23
100 30 0.23
101 53 0.40
102 18 0.14
ACGTcount: A:0.53, C:0.17, G:0.11, T:0.19
Consensus pattern (100 bp):
AAGAAATCAAGAACAAGAAAAACCCAGATTTGCAATCACTAAAATCAAATAATACCAAGAAAAAC
ATAAATAGCTCTACAATCTAAAAAGTTGAAAAATC
Found at i:924044 original size:18 final size:19
Alignment explanation
Indices: 924021--924057 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
924011 ATATTACATG
924021 AAAGTAAATGAGAA-AAAA
1 AAAGTAAATGAGAATAAAA
*
924039 AAAGTATATGAGAATAAAA
1 AAAGTAAATGAGAATAAAA
924058 TAATAAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.68, C:0.00, G:0.16, T:0.16
Consensus pattern (19 bp):
AAAGTAAATGAGAATAAAA
Found at i:925717 original size:22 final size:23
Alignment explanation
Indices: 925692--925736 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
925682 TTCTTCTCCG
*
925692 TTATGACATGTTTTTT-TTATTT
1 TTATGACATATTTTTTATTATTT
*
925714 TTATGGCATATTTTTTATTATTT
1 TTATGACATATTTTTTATTATTT
925737 GATTGTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 14 0.70
23 6 0.30
ACGTcount: A:0.20, C:0.04, G:0.09, T:0.67
Consensus pattern (23 bp):
TTATGACATATTTTTTATTATTT
Found at i:927904 original size:76 final size:76
Alignment explanation
Indices: 927776--927966 Score: 287
Period size: 76 Copynumber: 2.5 Consensus size: 76
927766 CCGTTATGAG
* *
927776 ATGGGGGTATCGGTA-CCTCCT-GGGGGTATCGGTACCCTCCAAGCAATCTGTTATTTCTCGGAG
1 ATGGGGGTATCGGTACCCTCTTGGGGGGTATCGGTACCCTCCAAGCAATATGTTATTTCTCGGAG
927839 CCAAATCTTAA
66 CCAAATCTTAA
* *
927850 ATGGGGGTATCAGTACCCTCTTGGGGGGTATCGGTACCCTCCGAGCAATATGTTATTTCTCGGAG
1 ATGGGGGTATCGGTACCCTCTTGGGGGGTATCGGTACCCTCCAAGCAATATGTTATTTCTCGGAG
*
927915 CCAAATCTTAT
66 CCAAATCTTAA
* * * *
927926 ATGAGAGTATCGGTACCTTCTTGGGGGGTATCGATACCCTC
1 ATGGGGGTATCGGTACCCTCTTGGGGGGTATCGGTACCCTC
927967 TGGGCAATCT
Statistics
Matches: 105, Mismatches: 10, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
74 14 0.13
75 5 0.05
76 86 0.82
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.29
Consensus pattern (76 bp):
ATGGGGGTATCGGTACCCTCTTGGGGGGTATCGGTACCCTCCAAGCAATATGTTATTTCTCGGAG
CCAAATCTTAA
Found at i:928636 original size:76 final size:75
Alignment explanation
Indices: 928512--928713 Score: 282
Period size: 76 Copynumber: 2.7 Consensus size: 75
928502 CCGTTATGAG
* *
928512 ATGGGGGTATCGGTA-CCTCCT-GGGGGTATCGGTACCCTCCAAGCAATCTGTTATTTCTCGGAG
1 ATGGGGGTATCGGTACCCTCTTGGGGGGTATC-GTACCCTCCGAGCAATCTGTTATTTCTCGGAG
928575 CCAAATCTTAA
65 CCAAATCTTAA
*
928586 ATGGGGGTATCAGTACCCTCTTGGGGGGTATCAGTACCCTCCGAGCAATCTGTTATTTCTCGGAG
1 ATGGGGGTATCGGTACCCTCTTGGGGGGTATC-GTACCCTCCGAGCAATCTGTTATTTCTCGGAG
*
928651 CCAAATCTTAT
65 CCAAATCTTAA
* * * * *
928662 ATGAGAGTATCGGTACCTTCTTGGGGGGTATCGATACCCTCTGGGCAATCTG
1 ATGGGGGTATCGGTACCCTCTTGGGGGGTATCG-TACCCTCCGAGCAATCTG
928714 GTTTTTCAGT
Statistics
Matches: 114, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
74 14 0.12
75 6 0.05
76 94 0.82
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.29
Consensus pattern (75 bp):
ATGGGGGTATCGGTACCCTCTTGGGGGGTATCGTACCCTCCGAGCAATCTGTTATTTCTCGGAGC
CAAATCTTAA
Found at i:928982 original size:736 final size:736
Alignment explanation
Indices: 927572--929045 Score: 2885
Period size: 736 Copynumber: 2.0 Consensus size: 736
927562 TTCTTGATAA
*
927572 TTGTTGTTGATCAATGGCTTCTAAGCTTGTTTAAATACTCCTTAGATCATTTCTGAACGTTGGGG
1 TTGTTGTTCATCAATGGCTTCTAAGCTTGTTTAAATACTCCTTAGATCATTTCTGAACGTTGGGG
* *
927637 GTCATTAGTGGAGTTAATAGAGCCGTTATTGTGTGAAAATAATTAATAAAATAGCTTGGAGCGTT
66 GTCATTAGTGGAGTTAATAGAGCCGTTATTGTGTGAAAACAATTAATAAAATAGCTTAGAGCGTT
927702 GGGGGGTATCGGTACCTCTGCATAGGGTATCAGTACCCTGCTGTGTAAAATTCAAATATTTCGAC
131 GGGGGGTATCGGTACCTCTGCATAGGGTATCAGTACCCTGCTGTGTAAAATTCAAATATTTCGAC
927767 CGTTATGAGATGGGGGTATCGGTACCTCCTGGGGGTATCGGTACCCTCCAAGCAATCTGTTATTT
196 CGTTATGAGATGGGGGTATCGGTACCTCCTGGGGGTATCGGTACCCTCCAAGCAATCTGTTATTT
*
927832 CTCGGAGCCAAATCTTAAATGGGGGTATCAGTACCCTCTTGGGGGGTATCGGTACCCTCCGAGCA
261 CTCGGAGCCAAATCTTAAATGGGGGTATCAGTACCCTCTTGGGGGGTATCAGTACCCTCCGAGCA
927897 ATATGTTATTTCTCGGAGCCAAATCTTATATGAGAGTATCGGTACCTTCTTGGGGGGTATCGATA
326 ATATGTTATTTCTCGGAGCCAAATCTTATATGAGAGTATCGGTACCTTCTTGGGGGGTATCGATA
927962 CCCTCTGGGCAATCTGGTTTTTCAGTTTAAGATTTATTAAGAAAATATTTTTGGCTCGATTAAAG
391 CCCTCTGGGCAATCTGGTTTTTCAGTTTAAGATTTATTAAGAAAATATTTTTGGCTCGATTAAAG
928027 GCTCGAAATACTTTGTAAAATTGTTTAAAAGATTAAAACACACTTTTACACTTGAGTAACGATTG
456 GCTCGAAATACTTTGTAAAATTGTTTAAAAGATTAAAACACACTTTTACACTTGAGTAACGATTG
928092 AATTTGACATTTGAAAAACTTGGAGTAATATTTTAATATTCGAATAGTTTGATCGAATATATATT
521 AATTTGACATTTGAAAAACTTGGAGTAATATTTTAATATTCGAATAGTTTGATCGAATATATATT
*
928157 TGAAAAATATTAGAAAATCTTGAAATCCAATAACATTTAATTTGTTATATCGAAACATCAAAATG
586 TGAAAAATATTAGAAAATCTTGAAATCCAATAACATTTAATTTGTTATATCAAAACATCAAAATG
928222 TTTTCAACAATCTCCCCTTTTTGATATAACTAAACATTTTAGTAATTTTAAGATTTTCTAATTGA
651 TTTTCAACAATCTCCCCTTTTTGATATAACTAAACATTTTAGTAATTTTAAGATTTTCTAATTGA
928287 AAATCATTTTTGAAATCACGT
716 AAATCATTTTTGAAATCACGT
928308 TTGTTGTTCATCAATGGCTTCTAAGCTTGTTTAAATACTCCTTAGATCATTTCTGAACGTTGGGG
1 TTGTTGTTCATCAATGGCTTCTAAGCTTGTTTAAATACTCCTTAGATCATTTCTGAACGTTGGGG
928373 GTCATTAGTGGAGTTAATAGAGCCGTTATTGTGTGAAAACAATTAATAAAATAGCTTAGAGCGTT
66 GTCATTAGTGGAGTTAATAGAGCCGTTATTGTGTGAAAACAATTAATAAAATAGCTTAGAGCGTT
*
928438 GGGGGGTATCGGTACCTCTGCATAGGGTATCAGTACCCTGCTTTGTAAAATTCAAATATTTCGAC
131 GGGGGGTATCGGTACCTCTGCATAGGGTATCAGTACCCTGCTGTGTAAAATTCAAATATTTCGAC
928503 CGTTATGAGATGGGGGTATCGGTACCTCCTGGGGGTATCGGTACCCTCCAAGCAATCTGTTATTT
196 CGTTATGAGATGGGGGTATCGGTACCTCCTGGGGGTATCGGTACCCTCCAAGCAATCTGTTATTT
928568 CTCGGAGCCAAATCTTAAATGGGGGTATCAGTACCCTCTTGGGGGGTATCAGTACCCTCCGAGCA
261 CTCGGAGCCAAATCTTAAATGGGGGTATCAGTACCCTCTTGGGGGGTATCAGTACCCTCCGAGCA
*
928633 ATCTGTTATTTCTCGGAGCCAAATCTTATATGAGAGTATCGGTACCTTCTTGGGGGGTATCGATA
326 ATATGTTATTTCTCGGAGCCAAATCTTATATGAGAGTATCGGTACCTTCTTGGGGGGTATCGATA
928698 CCCTCTGGGCAATCTGGTTTTTCAGTTTAAGATTTATTAAGAAAATATTTTTGGCTCGATTAAAG
391 CCCTCTGGGCAATCTGGTTTTTCAGTTTAAGATTTATTAAGAAAATATTTTTGGCTCGATTAAAG
928763 GCTCGAAATACTTTGTAAAATTGTTTAAAAGATTAAAACACACTTTTACACTTGAGTAACGATTG
456 GCTCGAAATACTTTGTAAAATTGTTTAAAAGATTAAAACACACTTTTACACTTGAGTAACGATTG
928828 AATTTGACATTTGAAAAACTTGGAGTAATATTTTAATATTCGAATAGTTTGATCGAATATATATT
521 AATTTGACATTTGAAAAACTTGGAGTAATATTTTAATATTCGAATAGTTTGATCGAATATATATT
928893 TGAAAAATATTAGAAAATCTTGAAATCCAATAACATTTAATTTGTTATATCAAAACATCAAAATG
586 TGAAAAATATTAGAAAATCTTGAAATCCAATAACATTTAATTTGTTATATCAAAACATCAAAATG
928958 TTTTCAACAATCTCCCCTTTTTGATATAACTAAACATTTTAGTAATTTTAAGATTTTCTAATTGA
651 TTTTCAACAATCTCCCCTTTTTGATATAACTAAACATTTTAGTAATTTTAAGATTTTCTAATTGA
929023 AAATCATTTTTGAAATCACGT
716 AAATCATTTTTGAAATCACGT
929044 TT
1 TT
929046 TGAAATTACT
Statistics
Matches: 731, Mismatches: 7, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
736 731 1.00
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.35
Consensus pattern (736 bp):
TTGTTGTTCATCAATGGCTTCTAAGCTTGTTTAAATACTCCTTAGATCATTTCTGAACGTTGGGG
GTCATTAGTGGAGTTAATAGAGCCGTTATTGTGTGAAAACAATTAATAAAATAGCTTAGAGCGTT
GGGGGGTATCGGTACCTCTGCATAGGGTATCAGTACCCTGCTGTGTAAAATTCAAATATTTCGAC
CGTTATGAGATGGGGGTATCGGTACCTCCTGGGGGTATCGGTACCCTCCAAGCAATCTGTTATTT
CTCGGAGCCAAATCTTAAATGGGGGTATCAGTACCCTCTTGGGGGGTATCAGTACCCTCCGAGCA
ATATGTTATTTCTCGGAGCCAAATCTTATATGAGAGTATCGGTACCTTCTTGGGGGGTATCGATA
CCCTCTGGGCAATCTGGTTTTTCAGTTTAAGATTTATTAAGAAAATATTTTTGGCTCGATTAAAG
GCTCGAAATACTTTGTAAAATTGTTTAAAAGATTAAAACACACTTTTACACTTGAGTAACGATTG
AATTTGACATTTGAAAAACTTGGAGTAATATTTTAATATTCGAATAGTTTGATCGAATATATATT
TGAAAAATATTAGAAAATCTTGAAATCCAATAACATTTAATTTGTTATATCAAAACATCAAAATG
TTTTCAACAATCTCCCCTTTTTGATATAACTAAACATTTTAGTAATTTTAAGATTTTCTAATTGA
AAATCATTTTTGAAATCACGT
Found at i:931433 original size:23 final size:23
Alignment explanation
Indices: 931380--931457 Score: 76
Period size: 20 Copynumber: 3.6 Consensus size: 23
931370 ACACCGTGGA
931380 GGGTATCGGTA-CC-CTC-AGGG
1 GGGTATCGGTACCCACTCAAGGG
931400 GGGTATCGGTACCCACTCAAAGGG
1 GGGTATCGGTACCCACTC-AAGGG
* * *
931424 GGG-ATTGGTATCCATTCAA-GG
1 GGGTATCGGTACCCACTCAAGGG
*
931445 GGGTATCGATACC
1 GGGTATCGGTACC
931458 TCCTGCACTA
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
20 11 0.23
21 7 0.15
22 11 0.23
23 11 0.23
24 7 0.15
ACGTcount: A:0.22, C:0.22, G:0.35, T:0.22
Consensus pattern (23 bp):
GGGTATCGGTACCCACTCAAGGG
Found at i:935197 original size:22 final size:21
Alignment explanation
Indices: 935155--935194 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
935145 AACACTATTT
935155 TCATTTTTCAATTTTGAAATA
1 TCATTTTTCAATTTTGAAATA
935176 TCATTTTT-ATATTTTGAAA
1 TCATTTTTCA-ATTTTGAAA
935195 ATAAAGTCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.33, C:0.07, G:0.05, T:0.55
Consensus pattern (21 bp):
TCATTTTTCAATTTTGAAATA
Found at i:938116 original size:25 final size:26
Alignment explanation
Indices: 938067--938116 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
938057 CTATACTATA
*
938067 ATATAATATAAATATTTTTTAAAAACT
1 ATATAATAT-AATATATTTTAAAAACT
*
938094 ATATAATAT-ATATATTTTCAAAA
1 ATATAATATAATATATTTTAAAAA
938117 TGTTTTCAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 12 0.57
27 9 0.43
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (26 bp):
ATATAATATAATATATTTTAAAAACT
Found at i:938134 original size:37 final size:37
Alignment explanation
Indices: 938082--938275 Score: 194
Period size: 37 Copynumber: 5.5 Consensus size: 37
938072 ATATAAATAT
* *
938082 TTTTTAAAAACTATATAATATATATATTTTCAAAATG
1 TTTTCAAAAATTATATAATATATATATTTTCAAAATG
*
938119 TTTTCAAAAATTATATATTATATATATTTTCAAAATG
1 TTTTCAAAAATTATATAATATATATATTTTCAAAATG
* *
938156 TTTTCAAAAA--CTAT--T-TAT-TA-TTT----ATA
1 TTTTCAAAAATTATATAATATATATATTTTCAAAATG
* *
938182 TTTTCAAAAACTATATATTATATATATTTTTTCAAAATG
1 TTTTCAAAAA-T-TATATAATATATATATTTTCAAAATG
* * *
938221 TTTTCAAAAACTATATATATATATATATATTCAAAATA
1 TTTTCAAAAATTATATA-ATATATATATTTTCAAAATG
938259 TTTTCAAAAATTATATA
1 TTTTCAAAAATTATATA
938276 TTTTTAAAAA
Statistics
Matches: 129, Mismatches: 14, Indels: 27
0.76 0.08 0.16
Matches are distributed among these distances:
26 12 0.09
30 6 0.05
31 2 0.02
32 4 0.03
33 4 0.03
34 1 0.01
35 6 0.05
37 49 0.38
38 33 0.26
39 12 0.09
ACGTcount: A:0.44, C:0.07, G:0.02, T:0.47
Consensus pattern (37 bp):
TTTTCAAAAATTATATAATATATATATTTTCAAAATG
Found at i:938186 original size:26 final size:26
Alignment explanation
Indices: 938156--938211 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
938146 TTTCAAAATG
* *
938156 TTTTCAAAAACTATTTATTATTTATA
1 TTTTCAAAAACTATATATTATATATA
938182 TTTTCAAAAACTATATATTATATATA
1 TTTTCAAAAACTATATATTATATATA
938208 TTTT
1 TTTT
938212 TTCAAAATGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.39, C:0.07, G:0.00, T:0.54
Consensus pattern (26 bp):
TTTTCAAAAACTATATATTATATATA
Found at i:938226 original size:65 final size:63
Alignment explanation
Indices: 938119--938447 Score: 332
Period size: 63 Copynumber: 5.1 Consensus size: 63
938109 TTTCAAAATG
* * *
938119 TTTTCAAAAATTATATATTATATATATTTTCAAAATGTTTTCAAAAACTATTTATTATTTATA
1 TTTTCAAAAACTATATATTATATATATTTTCAAAATGTTTTCAAAAACTATATATTATATATA
938182 TTTTCAAAAACTATATATTATATATATTTTTTCAAAATGTTTTCAAAAACTATATATATATATAT
1 TTTTCAAAAACTATATATTATATATA--TTTTCAAAATGTTTTCAAAAACTATATAT-TATATAT
938247 A
63 A
* * * * *
938248 TATTCAAAATATTTTCAAAAATTATATAT-TTTTAAAAATGTTTTCAAAAACTATATATATATTC
1 TTTTCAAAA-A--CT-ATATATTATATATATTTTCAAAATGTTTTCAAAAACTATATAT-TA-T-
*
938312 AAAATA
59 -ATATA
* ***
938318 TTTTCAGAAAC--TATA-TATATATATTTTCAAAA-AAATTC-AAAA-TATATATTATATATA
1 TTTTCAAAAACTATATATTATATATATTTTCAAAATGTTTTCAAAAACTATATATTATATATA
* * * *
938375 TTTTCAAAAACTATATATT-TATATATTTTAAAAATATTTTAAAAAAAACTATATATTATATATG
1 TTTTCAAAAACTATATATTATATATATTTTCAAAATGTTTT--CAAAAACTATATATTATATATA
938439 TTTTCAAAA
1 TTTTCAAAA
938448 TTTTATATAT
Statistics
Matches: 222, Mismatches: 25, Indels: 37
0.78 0.09 0.13
Matches are distributed among these distances:
57 14 0.06
59 19 0.09
60 6 0.03
61 7 0.03
62 4 0.02
63 39 0.18
64 33 0.15
65 28 0.13
66 15 0.07
67 32 0.14
68 1 0.00
69 2 0.01
70 22 0.10
ACGTcount: A:0.46, C:0.07, G:0.02, T:0.46
Consensus pattern (63 bp):
TTTTCAAAAACTATATATTATATATATTTTCAAAATGTTTTCAAAAACTATATATTATATATA
Found at i:938254 original size:38 final size:37
Alignment explanation
Indices: 938182--938309 Score: 155
Period size: 38 Copynumber: 3.6 Consensus size: 37
938172 ATTATTTATA
*
938182 TTTTCAAAAACTATATATTATATATATTTTTTCAAAATG
1 TTTTCAAAAACTATATA-TATATATA-TTATTCAAAATG
*
938221 TTTTCAAAAACTATATATATATATATATATTCAAAATA
1 TTTTCAAAAACTATATATATATATAT-TATTCAAAATG
938259 TTTTCAAAAA-T-TATATAT-T-T-TTA---AAAATG
1 TTTTCAAAAACTATATATATATATATTATTCAAAATG
938288 TTTTCAAAAACTATATATATAT
1 TTTTCAAAAACTATATATATAT
938310 TCAAAATATT
Statistics
Matches: 82, Mismatches: 3, Indels: 15
0.82 0.03 0.15
Matches are distributed among these distances:
29 15 0.18
30 1 0.01
31 7 0.09
32 3 0.04
33 1 0.01
34 1 0.01
35 1 0.01
36 7 0.09
37 2 0.02
38 27 0.33
39 17 0.21
ACGTcount: A:0.45, C:0.07, G:0.02, T:0.46
Consensus pattern (37 bp):
TTTTCAAAAACTATATATATATATATTATTCAAAATG
Found at i:938276 original size:30 final size:30
Alignment explanation
Indices: 938240--938339 Score: 148
Period size: 30 Copynumber: 3.4 Consensus size: 30
938230 ACTATATATA
*
938240 TATATATATATTCAAAATATTTTCAAAAAT
1 TATATATATATTCAAAATATTTTCAAAAAC
* * *
938270 TATATAT-TTTTAAAAATGTTTTCAAAAAC
1 TATATATATATTCAAAATATTTTCAAAAAC
*
938299 TATATATATATTCAAAATATTTTCAGAAAC
1 TATATATATATTCAAAATATTTTCAAAAAC
938329 TATATATATAT
1 TATATATATAT
938340 ATTTTCAAAA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
29 25 0.41
30 36 0.59
ACGTcount: A:0.47, C:0.07, G:0.02, T:0.44
Consensus pattern (30 bp):
TATATATATATTCAAAATATTTTCAAAAAC
Found at i:938299 original size:67 final size:64
Alignment explanation
Indices: 938121--938447 Score: 253
Period size: 65 Copynumber: 5.1 Consensus size: 64
938111 TCAAAATGTT
* * * * *
938121 TTCAAAAATTAT-ATATTATATATATTTTCAAAATGTTTTCAAAAACTATTTAT-TATTTATATT
1 TTCAAAAACTATAAAATTATATAT-TTTTCAAAATGTTTTCAAAAACTATATATATATATATATA
* *
938184 TTCAAAAACTATATATTATATATATTTTTTCAAAATGTTTTCAAAAACTATATATATATATATAT
1 TTCAAAAACTATAAAAT-TATATA-TTTTTCAAAATGTTTTCAAAAACTATATATATATATATAT
938249 A
64 A
* * * *
938250 TTCAAAATATTTTCAAAAATTATATATTTTTAAAAATGTTTTCAAAAACTATATATATATTCAAA
1 TTCAAAA-ACTAT--AAAATTATATATTTTTCAAAATGTTTTCAAAAACTATATATATA-T--AT
*
938315 ATATT
60 ATATA
* * *** *
938320 TTCAGAAACTAT-ATA-TATATA-TTTTCAAAA-AAATTC-AAAA-TATATAT-TATATATATT
1 TTCAAAAACTATAAAATTATATATTTTTCAAAATGTTTTCAAAAACTATATATATATATATATA
* * * * * *
938377 TTCAAAAACTATATATTTATATA-TTTTAAAAATATTTTAAAAAAAACTATATAT-TATATATGT
1 TTCAAAAACTATAAAATTATATATTTTTCAAAATGTTTT--CAAAAACTATATATATATATATAT
*
938440 T
64 A
938441 TTCAAAA
1 TTCAAAA
938448 TTTTATATAT
Statistics
Matches: 215, Mismatches: 32, Indels: 33
0.77 0.11 0.12
Matches are distributed among these distances:
57 17 0.08
59 15 0.07
60 5 0.02
61 7 0.03
62 4 0.02
63 18 0.08
64 32 0.15
65 40 0.19
66 18 0.08
67 35 0.16
68 7 0.03
69 6 0.03
70 11 0.05
ACGTcount: A:0.46, C:0.07, G:0.02, T:0.45
Consensus pattern (64 bp):
TTCAAAAACTATAAAATTATATATTTTTCAAAATGTTTTCAAAAACTATATATATATATATATA
Found at i:938363 original size:59 final size:59
Alignment explanation
Indices: 938241--938408 Score: 156
Period size: 59 Copynumber: 2.8 Consensus size: 59
938231 CTATATATAT
**
938241 ATATATATATTCAAAATATTTTCAAAA--AT-TATATAT-TTTTAAAAATGTTTTCAAAAAC
1 ATATATATATTCAAAATATTTTCAAAACTATATATATATATTTTAAAAA-GAATTC--AAAC
938299 TATATATATATTCAAAATATTTTCAGAAACTATATATATATATTTTCAAAAA-AATTC-AA-
1 -ATATATATATTCAAAATATTTTCA-AAACTATATATATATATTTT-AAAAAGAATTCAAAC
*
938358 A-ATATATATT-ATATATATTTTCAAAAACTATATATTTATATATTTTAAAAA
1 ATATATATATTCA-AAATATTTTC-AAAACTATATA--TATATATTTTAAAAA
938409 TATTTTAAAA
Statistics
Matches: 96, Mismatches: 3, Indels: 21
0.80 0.03 0.17
Matches are distributed among these distances:
56 1 0.01
57 28 0.29
58 7 0.07
59 34 0.35
60 5 0.05
62 2 0.02
63 10 0.10
64 4 0.04
65 5 0.05
ACGTcount: A:0.49, C:0.07, G:0.01, T:0.43
Consensus pattern (59 bp):
ATATATATATTCAAAATATTTTCAAAACTATATATATATATTTTAAAAAGAATTCAAAC
Found at i:938371 original size:32 final size:35
Alignment explanation
Indices: 938299--938384 Score: 99
Period size: 34 Copynumber: 2.5 Consensus size: 35
938289 TTTCAAAAAC
* **
938299 TATATATATATTCAAAATATTTTCAGAAAC--TATA
1 TATATATATTTTCAAAA-AAATTCAGAAACTATATA
938333 TATATATATTTTCAAAAAAATTCA-AAA-TATATA
1 TATATATATTTTCAAAAAAATTCAGAAACTATATA
938366 TTATATATATTTTCAAAAA
1 -TATATATATTTTCAAAAA
938385 CTATATATTT
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
32 3 0.07
33 9 0.20
34 34 0.74
ACGTcount: A:0.50, C:0.07, G:0.01, T:0.42
Consensus pattern (35 bp):
TATATATATTTTCAAAAAAATTCAGAAACTATATA
Found at i:938384 original size:25 final size:23
Alignment explanation
Indices: 938356--938411 Score: 85
Period size: 25 Copynumber: 2.3 Consensus size: 23
938346 AAAAAAATTC
938356 AAAATATATATTATATATATTTTCA
1 AAAATATATATT-TATATATTTT-A
938381 AAAACTATATATTTATATATTTTA
1 AAAA-TATATATTTATATATTTTA
938405 AAAATAT
1 AAAATAT
938412 TTTAAAAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
23 3 0.10
24 5 0.17
25 14 0.47
26 8 0.27
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (23 bp):
AAAATATATATTTATATATTTTA
Found at i:938399 original size:36 final size:36
Alignment explanation
Indices: 938359--938437 Score: 97
Period size: 36 Copynumber: 2.2 Consensus size: 36
938349 AAAATTCAAA
* * *
938359 ATATATATTATATATATTTT-CAAAAACTATATATTT
1 ATATATATTAAAAATATTTTAAAAAAACTATATA-TT
*
938395 ATATATTTTAAAAATATTTTAAAAAAAACTATATATT
1 ATATATATTAAAAATATTTT-AAAAAAACTATATATT
938432 ATATAT
1 ATATAT
938438 GTTTTCAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
36 17 0.46
37 8 0.22
38 12 0.32
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (36 bp):
ATATATATTAAAAATATTTTAAAAAAACTATATATT
Found at i:938428 original size:57 final size:57
Alignment explanation
Indices: 938315--938430 Score: 139
Period size: 57 Copynumber: 2.0 Consensus size: 57
938305 TATATTCAAA
* * *
938315 ATATTTTCAGAAACTATATATATATATTTTCAAAAAAATTCAAAATATATATTATAT
1 ATATTTTCAAAAACTATATATATATATTTTCAAAAAAATTCAAAATATAAACTATAT
* *
938372 ATATTTTCAAAAACTATATATTTATATATTTT-AAAAATATTTTAAAA-A-AAACTATAT
1 ATATTTTCAAAAACTATATA--TATATATTTTCAAAAA-AATTCAAAATATAAACTATAT
938429 AT
1 AT
938431 TATATATGTT
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
57 28 0.55
58 6 0.12
59 17 0.33
ACGTcount: A:0.50, C:0.06, G:0.01, T:0.43
Consensus pattern (57 bp):
ATATTTTCAAAAACTATATATATATATTTTCAAAAAAATTCAAAATATAAACTATAT
Found at i:939221 original size:123 final size:122
Alignment explanation
Indices: 939081--939314 Score: 371
Period size: 123 Copynumber: 1.9 Consensus size: 122
939071 ATGGATGGGA
*
939081 TCCTTCACTGTGAAGTTGAGCTTTGAATTGGATGTCTTTCGTTGTGAAA-TTGAAATCCAATCTT
1 TCCTTCACTGTGAAGTTGAGCTTTGAATTGGATGTCCTTCGTTGT-AAAGTTGAAATCCAATCTT
* *
939145 GTAAATTGCATCGCCTCAAGTTTAATATCTTTCGTTGTGAAGTTGAAAATGTGGATAGC
65 GTAAATTGCATCGCCTCAAGTTCAATATCTTTCGCTGT-AAGTTGAAAATGTGGATAGC
* *
939204 TCCTTCACTGTGAAGTTGATCTTTGAATTGGGTGTCCTTCGTTGTAAAGTTGAAATCCAATCTTG
1 TCCTTCACTGTGAAGTTGAGCTTTGAATTGGATGTCCTTCGTTGTAAAGTTGAAATCCAATCTTG
* * *
939269 TAAATTGCATCGCTTCGAGTTCAATATCTTTCGCTGTTAGTTGAAA
66 TAAATTGCATCGCCTCAAGTTCAATATCTTTCGCTGTAAGTTGAAA
939315 TTGACTCTAA
Statistics
Matches: 102, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
122 11 0.11
123 91 0.89
ACGTcount: A:0.25, C:0.16, G:0.21, T:0.39
Consensus pattern (122 bp):
TCCTTCACTGTGAAGTTGAGCTTTGAATTGGATGTCCTTCGTTGTAAAGTTGAAATCCAATCTTG
TAAATTGCATCGCCTCAAGTTCAATATCTTTCGCTGTAAGTTGAAAATGTGGATAGC
Found at i:939703 original size:3 final size:3
Alignment explanation
Indices: 939695--939779 Score: 79
Period size: 3 Copynumber: 28.7 Consensus size: 3
939685 TCCGAGTTGA
* * *
939695 TAT TAT TA- TAT TAT TAC TAT TAT TAT TAT TAT ATAC TA- TAT TAC
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT
*
939739 TA- TAT TAT TAT TAT TAT ATAT ATAT TAA TAT TAT TA- TAT TA
1 TAT TAT TAT TAT TAT TAT -TAT -TAT TAT TAT TAT TAT TAT TA
939780 CAAATATTAA
Statistics
Matches: 70, Mismatches: 6, Indels: 12
0.80 0.07 0.14
Matches are distributed among these distances:
2 8 0.11
3 53 0.76
4 9 0.13
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:939720 original size:20 final size:19
Alignment explanation
Indices: 939695--939777 Score: 93
Period size: 18 Copynumber: 4.4 Consensus size: 19
939685 TCCGAGTTGA
939695 TATTATTATATTATTACTAT
1 TATTA-TATATTATTACTAT
939715 TATTAT-TATTATATACTA-
1 TATTATATATTAT-TACTAT
*
939733 TATTACTATATTATTATTAT
1 TATTA-TATATTATTACTAT
*
939753 TA-TATATA-TATTAATAT
1 TATTATATATTATTACTAT
939770 TATTATAT
1 TATTATAT
939778 TACAAATATT
Statistics
Matches: 56, Mismatches: 2, Indels: 12
0.80 0.03 0.17
Matches are distributed among these distances:
17 10 0.18
18 20 0.36
19 13 0.23
20 13 0.23
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.58
Consensus pattern (19 bp):
TATTATATATTATTACTAT
Found at i:939744 original size:26 final size:24
Alignment explanation
Indices: 939695--939779 Score: 100
Period size: 26 Copynumber: 3.3 Consensus size: 24
939685 TCCGAGTTGA
939695 TATTATTATATTATTACTATTATTAT
1 TATTATTATA-TATTACTA-TATTAT
939721 TATTATATACTATATTACTATATTAT
1 TATTAT-TA-TATATTACTATATTAT
*
939747 TATTATTATATATATATTAATATTAT
1 TATTATTATATAT-TACT-ATATTAT
939773 TA-TATTA
1 TATTATTA
939780 CAAATATTAA
Statistics
Matches: 54, Mismatches: 1, Indels: 9
0.84 0.02 0.14
Matches are distributed among these distances:
24 5 0.09
25 10 0.19
26 27 0.50
27 10 0.19
28 2 0.04
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.58
Consensus pattern (24 bp):
TATTATTATATATTACTATATTAT
Found at i:939786 original size:23 final size:23
Alignment explanation
Indices: 939694--939789 Score: 79
Period size: 23 Copynumber: 4.0 Consensus size: 23
939684 GTCCGAGTTG
** *
939694 ATATTATTATATTATTACTATTA
1 ATATTATTATATTACAAATATTA
* *
939717 TTATTATTATA-TAC-TATATTA
1 ATATTATTATATTACAAATATTA
*
939738 CTATATTATTATTATTATATATATATTA
1 --ATATTATTA-TATTACA-A-ATATTA
939766 ATATTATTATATTACAAATATTA
1 ATATTATTATATTACAAATATTA
939789 A
1 A
939790 AAAATTGGGG
Statistics
Matches: 58, Mismatches: 8, Indels: 14
0.73 0.10 0.17
Matches are distributed among these distances:
21 5 0.09
22 2 0.03
23 25 0.43
24 3 0.05
25 8 0.14
26 9 0.16
28 6 0.10
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.54
Consensus pattern (23 bp):
ATATTATTATATTACAAATATTA
Found at i:940658 original size:23 final size:23
Alignment explanation
Indices: 940629--940681 Score: 97
Period size: 23 Copynumber: 2.3 Consensus size: 23
940619 TTTAGAGAGA
940629 AGAGAGAGCTTCTCCCTCCTTTG
1 AGAGAGAGCTTCTCCCTCCTTTG
940652 AGAGAGAGCTTCTCCCTCCTTTG
1 AGAGAGAGCTTCTCCCTCCTTTG
*
940675 GGAGAGA
1 AGAGAGA
940682 AGCAAAATGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.21, C:0.26, G:0.26, T:0.26
Consensus pattern (23 bp):
AGAGAGAGCTTCTCCCTCCTTTG
Found at i:940918 original size:2 final size:2
Alignment explanation
Indices: 940911--940951 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
940901 TAGTCACTAT
940911 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
940952 TAATTACGTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:941874 original size:93 final size:92
Alignment explanation
Indices: 941606--941897 Score: 268
Period size: 91 Copynumber: 3.2 Consensus size: 92
941596 TGTCGACAGT
* * * * *
941606 ATGATGAGCTCAT-GGGGATGAGGGTCTGGGGTTGGATAAGCACATTTCACTTCTGGAACATAAT
1 ATGATGAGCTCATGGGGGATGAGGGTCTGGGGTAGAATGAGC-CAGTTCACCTCTGGAACATAAT
* *
941670 TTCCCCAAT-GAGCTGGAGGATCTGGGTG
65 GTCCCC-ATGGAGCTGGAGGATCTGAGTG
* * * * * * * * *
941698 ATGATGAGCTCATGAGTGAGGA-GGTCTGGCGCAAAATGAACCAGTTCACCTATGGAACATAGTG
1 ATGATGAGCTCATGGGGGATGAGGGTCTGGGGTAGAATGAGCCAGTTCACCTCTGGAACATAATG
* * * *
941762 TCCCCAAGAACCCGGAGGATCTGAGTG
66 TCCCCATGGAGCTGGAGGATCTGAGTG
* * * *
941789 ATGATGAGCTCATGGGGGATAAGGGTTTGGGGTAGAATGAGCCTAGTTCACCTCTAGAACATAAA
1 ATGATGAGCTCATGGGGGATGAGGGTCTGGGGTAGAATGAGCC-AGTTCACCTCTGGAACATAAT
** *
941854 GTCCCCATGGAGCTTAAGGATCT-AGGGG
65 GTCCCCATGGAGCTGGAGGATCTGA-GTG
*
941882 ATGATGTGCTCATGGG
1 ATGATGAGCTCATGGG
941898 AAGAAGGATC
Statistics
Matches: 154, Mismatches: 41, Indels: 9
0.75 0.20 0.04
Matches are distributed among these distances:
90 1 0.01
91 56 0.36
92 41 0.27
93 56 0.36
ACGTcount: A:0.27, C:0.17, G:0.32, T:0.24
Consensus pattern (92 bp):
ATGATGAGCTCATGGGGGATGAGGGTCTGGGGTAGAATGAGCCAGTTCACCTCTGGAACATAATG
TCCCCATGGAGCTGGAGGATCTGAGTG
Found at i:942645 original size:3 final size:3
Alignment explanation
Indices: 942637--942705 Score: 104
Period size: 3 Copynumber: 23.0 Consensus size: 3
942627 CATTTTAAAT
**
942637 TTA TTA TTA TTA AAA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
942685 TTA TTA TTA -TA TTA TTTA TTA
1 TTA TTA TTA TTA TTA -TTA TTA
942706 AATATTACAA
Statistics
Matches: 60, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
2 2 0.03
3 55 0.92
4 3 0.05
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:947111 original size:41 final size:42
Alignment explanation
Indices: 947062--947355 Score: 159
Period size: 41 Copynumber: 7.2 Consensus size: 42
947052 TAAAAATGTT
947062 GCAATAGAGTTGACATATAGCGGCGTTTTTACAACAAACG-C
1 GCAATAGAGTTGACATATAGCGGCGTTTTTACAACAAACGCC
* ** * * *
947103 GTAATAGAGGGGTAAAT-TAGCGGCGTTTATACCACAAACGCC
1 GCAATAGAGTTG-ACATATAGCGGCGTTTTTACAACAAACGCC
* * *
947145 GCAATAGA-TTAACATATAGTGGCG-TTTTAGCCA-AAACGCC
1 GCAATAGAGTTGACATATAGCGGCGTTTTTA-CAACAAACGCC
* * * * *
947185 ACAATAGA-TCGGTAAAT-TAGCGGCGTTTATACCACAAACGCC
1 GCAATAGAGT-TG-ACATATAGCGGCGTTTTTACAACAAACGCC
* * *
947227 GCAATAGA-TT-ACATATAGTGGCATTTATT-CTTA-AAACGCC
1 GCAATAGAGTTGACATATAGCGGCGTTT-TTAC-AACAAACGCC
** * * * * *
947267 GCAATA-TTTATAATAAATAGTGGCGTTTTTA-GACAAACGCC
1 GCAATAGAGT-TGACATATAGCGGCGTTTTTACAACAAACGCC
* * * *
947308 ACAATAGTGTTAATCA-ATAGTGGCGTTTTTACAA-AAACGCC
1 GCAATAGAGTTGA-CATATAGCGGCGTTTTTACAACAAACGCC
947349 GCAATAG
1 GCAATAG
947356 TTTTAATCAA
Statistics
Matches: 198, Mismatches: 36, Indels: 38
0.73 0.13 0.14
Matches are distributed among these distances:
39 3 0.02
40 47 0.24
41 98 0.49
42 50 0.25
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (42 bp):
GCAATAGAGTTGACATATAGCGGCGTTTTTACAACAAACGCC
Found at i:947191 original size:82 final size:81
Alignment explanation
Indices: 947062--947248 Score: 261
Period size: 82 Copynumber: 2.3 Consensus size: 81
947052 TAAAAATGTT
* ** *
947062 GCAATAGAGTTGACATATAGCGGCGTTTTTACAACAAACGCGTAATAGAGGGGTAAATTAGCGGC
1 GCAATAGA-TT-ACATATAGTGGCGTTTTTACAACAAACGCACAATAGAGCGGTAAATTAGCGGC
947127 GTTTATACCACAAACGCC
64 GTTTATACCACAAACGCC
* *
947145 GCAATAGATTAACATATAGTGGCG-TTTTAGCCA-AAACGCCACAATAGATCGGTAAATTAGCGG
1 GCAATAGATT-ACATATAGTGGCGTTTTTA-CAACAAACG-CACAATAGAGCGGTAAATTAGCGG
947208 CGTTTATACCACAAACGCC
63 CGTTTATACCACAAACGCC
947227 GCAATAGATTACATATAGTGGC
1 GCAATAGATTACATATAGTGGC
947249 ATTTATTCTT
Statistics
Matches: 95, Mismatches: 7, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
81 22 0.23
82 65 0.68
83 8 0.08
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.24
Consensus pattern (81 bp):
GCAATAGATTACATATAGTGGCGTTTTTACAACAAACGCACAATAGAGCGGTAAATTAGCGGCGT
TTATACCACAAACGCC
Found at i:947232 original size:42 final size:41
Alignment explanation
Indices: 947079--947235 Score: 180
Period size: 41 Copynumber: 3.8 Consensus size: 41
947069 AGTTGACATA
* * * *
947079 TAGCGGCGTTTTTACAACAAACG-CGTAATAGAGGGGTAAAT
1 TAGCGGCGTTTATACCACAAACGCCGCAATAGA-TGGTAAAT
947120 TAGCGGCGTTTATACCACAAACGCCGCAATAGAT--TAACAT
1 TAGCGGCGTTTATACCACAAACGCCGCAATAGATGGTAA-AT
* *
947160 ATAGTGGCGTTT-TAGCCA-AAACGCCACAATAGATCGGTAAAT
1 -TAGCGGCGTTTATA-CCACAAACGCCGCAATAGAT-GGTAAAT
947202 TAGCGGCGTTTATACCACAAACGCCGCAATAGAT
1 TAGCGGCGTTTATACCACAAACGCCGCAATAGAT
947236 TACATATAGT
Statistics
Matches: 99, Mismatches: 8, Indels: 17
0.80 0.06 0.14
Matches are distributed among these distances:
39 3 0.03
40 19 0.19
41 47 0.47
42 27 0.27
43 3 0.03
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.23
Consensus pattern (41 bp):
TAGCGGCGTTTATACCACAAACGCCGCAATAGATGGTAAAT
Found at i:947292 original size:82 final size:81
Alignment explanation
Indices: 947115--947417 Score: 235
Period size: 82 Copynumber: 3.7 Consensus size: 81
947105 AATAGAGGGG
* * * * *
947115 TAAATTAGCGGCGTTTATACCACAAACGCCGCAATAGATTAACATATAGTGGCGTTTTAGCCAAA
1 TAAATTAGCGGCGTTTATACCACAAACGCCACAATAGATTAATA-ATAGTGGCATTTT-TCAAAA
* * **
947180 ACGCCACAATA--GATCGG
64 ACGCCGCAATATTTAT-AA
* *
947197 TAAATTAGCGGCGTTTATACCACAAACGCCGCAATAGATTACAT-ATAGTGGCATTTATTCTTAA
1 TAAATTAGCGGCGTTTATACCACAAACGCCACAATAGATTA-ATAATAGTGGCATTT-TTC-AAA
947261 AACGCCGCAATATTTATAA
63 AACGCCGCAATATTTATAA
* * * * *
947280 TAAA-TAGTGGCGTTTTTA-GACAAACGCCACAATAGTGTTAATCAATAGTGGCGTTTTTACAAA
1 TAAATTAGCGGCGTTTATACCACAAACGCCACAATAG-ATTAAT-AATAGTGGCATTTTT-CAAA
947343 AACGCCGCAATAGTTT-TAA
63 AACGCCGCAATA-TTTATAA
* ** * ***
947362 TCAA-TAATGGCGTTTTTTTAACAAACGCCACAATA-ATGTAATCAATAGTGGCATTT
1 TAAATTAGCGGCGTTTATACCACAAACGCCACAATAGAT-TAAT-AATAGTGGCATTT
947418 ATTTGTATAA
Statistics
Matches: 188, Mismatches: 21, Indels: 24
0.81 0.09 0.10
Matches are distributed among these distances:
81 30 0.16
82 121 0.64
83 35 0.19
84 2 0.01
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29
Consensus pattern (81 bp):
TAAATTAGCGGCGTTTATACCACAAACGCCACAATAGATTAATAATAGTGGCATTTTTCAAAAAC
GCCGCAATATTTATAA
Found at i:947356 original size:41 final size:41
Alignment explanation
Indices: 947124--947413 Score: 188
Period size: 41 Copynumber: 7.1 Consensus size: 41
947114 GTAAATTAGC
* * *
947124 GGCGTTTATACCACAAACGCCGCAATAG-ATTAA-CATATAGT
1 GGCGTTTTTA-CAAAAACGCCGCAATAGTGTTAATCA-ATAGT
* * * * *
947165 GGCG-TTTTAGCCAAAACGCCACAATAGATCGGTAA--ATTAGC
1 GGCGTTTTTA-CAAAAACGCCGCAATAG-T-GTTAATCAATAGT
* * *
947206 GGCGTTTATACCACAAACGCCGCAATAG-ATT-A-CATATAGT
1 GGCGTTTTTA-CAAAAACGCCGCAATAGTGTTAATCA-ATAGT
* * * *
947246 GGCATTTATT-CTTAAAACGCCGCAATA-TTTATAATAAATAGT
1 GGCGTTT-TTAC-AAAAACGCCGCAATAGTGT-TAATCAATAGT
* * *
947288 GGCGTTTTTAGACAAACGCCACAATAGTGTTAATCAATAGT
1 GGCGTTTTTACAAAAACGCCGCAATAGTGTTAATCAATAGT
* *
947329 GGCGTTTTTACAAAAACGCCGCAATAGTTTTAATCAATAAT
1 GGCGTTTTTACAAAAACGCCGCAATAGTGTTAATCAATAGT
** * *
947370 GGCGTTTTTTTAACAAACGCCACAATAATG-TAATCAATAGT
1 GGCGTTTTTACAA-AAACGCCGCAATAGTGTTAATCAATAGT
947411 GGC
1 GGC
947414 ATTTATTTGT
Statistics
Matches: 192, Mismatches: 42, Indels: 30
0.73 0.16 0.11
Matches are distributed among these distances:
38 1 0.01
39 3 0.02
40 41 0.21
41 97 0.51
42 46 0.24
43 4 0.02
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (41 bp):
GGCGTTTTTACAAAAACGCCGCAATAGTGTTAATCAATAGT
Found at i:947409 original size:123 final size:123
Alignment explanation
Indices: 947136--947413 Score: 279
Period size: 123 Copynumber: 2.3 Consensus size: 123
947126 CGTTTATACC
*
947136 ACAAACGCCGCAATAGATTAA-CATATAGTGGCGTTTTAGCCAAAACGCCACAATAGATCGGTAA
1 ACAAACGCCGCAATAGATTAATCA-ATAGTGGCGTTTTAGACAAAACGCCACAATAGATCGGTAA
* * *
947200 ATTAGCGGCGTTTATACCACAAACGCCGCAATAGATTACATATAGTGGCATTTATTCTT
65 AATAGCGGCGTTTATACCAAAAACGCCGCAATAGATTACATATAATGGCATTTATTCTT
** * *
947259 A-AAACGCCGCAATATTTATAATAAATAGTGGCGTTTTTAGAC-AAACGCCACAATAG-T-GTTA
1 ACAAACGCCGCAATAGAT-TAATCAATAGTGGCG-TTTTAGACAAAACGCCACAATAGATCGGTA
* * * *
947320 ATCAATAGTGGCGTTTTTA-CAAAAACGCCGCAATAGTTTTA-ATCAATAATGGCGTTT-TT-TT
64 A--AATAGCGGCGTTTATACCAAAAACGCCGCAATAG-ATTACAT--ATAATGGCATTTATTCTT
*
947381 AACAAACGCCACAATA-ATGTAATCAATAGTGGC
1 -ACAAACGCCGCAATAGAT-TAATCAATAGTGGC
947414 ATTTATTTGT
Statistics
Matches: 129, Mismatches: 16, Indels: 20
0.78 0.10 0.12
Matches are distributed among these distances:
121 4 0.03
122 35 0.27
123 60 0.47
124 30 0.23
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (123 bp):
ACAAACGCCGCAATAGATTAATCAATAGTGGCGTTTTAGACAAAACGCCACAATAGATCGGTAAA
ATAGCGGCGTTTATACCAAAAACGCCGCAATAGATTACATATAATGGCATTTATTCTT
Found at i:947530 original size:41 final size:41
Alignment explanation
Indices: 947485--947828 Score: 359
Period size: 41 Copynumber: 8.3 Consensus size: 41
947475 CCTAAAATCA
* *
947485 TTTAGTGGGGTTTTTATACAAACGCTGCTAAAGACTCGTAC
1 TTTAGTGGCGTTTTTATACAAACGCCGCTAAAGACTCGTAC
* * * * *
947526 TTTAGTGGCATTTTTTGTACAAACGCCGCTAAA-AATGAGTTC
1 TTTAGTGGC-GTTTTTATACAAACGCCGCTAAAGACT-CGTAC
* * * * *
947568 ATTAGTGGCGTTTTTGTACAAATGCCGCTAAAAACTAGTTA-
1 TTTAGTGGCGTTTTTATACAAACGCCGCTAAAGACTCG-TAC
* *
947609 TTTAGTGGCATTTTTATACAAACGCCGCTAACGACTCGTAC
1 TTTAGTGGCGTTTTTATACAAACGCCGCTAAAGACTCGTAC
* * * *
947650 TTTAGTGGCGTTTGTGTTTACAAACGCTGCTAAAGACTTGTAA
1 TTTAGTGGCGTTT-T-TATACAAACGCCGCTAAAGACTCGTAC
* * * *
947693 TTCAGTGGCGTTTTTATATAAACGCCGCTATAGACTCATAC
1 TTTAGTGGCGTTTTTATACAAACGCCGCTAAAGACTCGTAC
* * * *
947734 TTCAATGGCGTTTTTATACAAGCGTCGCTAAAGACTCGTAC
1 TTTAGTGGCGTTTTTATACAAACGCCGCTAAAGACTCGTAC
* * **
947775 TTCAGTGGCATTTTTATACAAACGCCGCTAAAGACTTTTAC
1 TTTAGTGGCGTTTTTATACAAACGCCGCTAAAGACTCGTAC
947816 TTTAGTGGCGTTT
1 TTTAGTGGCGTTT
947829 GTAAACACAA
Statistics
Matches: 249, Mismatches: 47, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
40 2 0.01
41 177 0.71
42 36 0.14
43 34 0.14
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (41 bp):
TTTAGTGGCGTTTTTATACAAACGCCGCTAAAGACTCGTAC
Found at i:947784 original size:166 final size:166
Alignment explanation
Indices: 947485--947830 Score: 414
Period size: 166 Copynumber: 2.1 Consensus size: 166
947475 CCTAAAATCA
* * * * *
947485 TTTAGTGGGGTTT-TTATACAAACGCTGCTAAAGACTCGTACTTTAGTGGCATTTTTTGTACAAA
1 TTTAGTGGCGTTTGTTATACAAACGCTGCTAAAGACTCGTAATTCAGTGGCAGTTTTTATACAAA
* * * * * *
947549 CGCCGCTAAAAATGAGTTCATTAGTGGCGTTTTTGTACAAATGCCGCTAAAAACTAGTTATTTAG
66 CGCCGCTAAAAATCAGTACATTAATGGCGTTTTTATACAAACGCCGCTAAAAACTAGTTATTCAG
*
947614 TGGCATTTTTATACAAACGCCGCTAACGACTCGTAC
131 TGGCATTTTTATACAAACGCCGCTAAAGACTCGTAC
* * *
947650 TTTAGTGGCGTTTGTGTTTACAAACGCTGCTAAAGACTTGTAATTCAGTGGC-GTTTTTATATAA
1 TTTAGTGGCGTTTGT-TATACAAACGCTGCTAAAGACTCGTAATTCAGTGGCAGTTTTTATACAA
* * * * * *
947714 ACGCCGCTATAGACTCA-TAC-TTCAATGGCGTTTTTATACAAGCGTCGCTAAAGACTCG-TACT
65 ACGCCGCTA-AAAATCAGTACATT-AATGGCGTTTTTATACAAACGCCGCTAAAAACTAGTTA-T
**
947776 TCAGTGGCATTTTTATACAAACGCCGCTAAAGACTTTTAC
127 TCAGTGGCATTTTTATACAAACGCCGCTAAAGACTCGTAC
947816 TTTAGTGGCGTTTGT
1 TTTAGTGGCGTTTGT
947831 AAACACAAAC
Statistics
Matches: 153, Mismatches: 23, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
165 16 0.10
166 101 0.66
167 36 0.24
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35
Consensus pattern (166 bp):
TTTAGTGGCGTTTGTTATACAAACGCTGCTAAAGACTCGTAATTCAGTGGCAGTTTTTATACAAA
CGCCGCTAAAAATCAGTACATTAATGGCGTTTTTATACAAACGCCGCTAAAAACTAGTTATTCAG
TGGCATTTTTATACAAACGCCGCTAAAGACTCGTAC
Found at i:950602 original size:43 final size:43
Alignment explanation
Indices: 950564--950767 Score: 237
Period size: 43 Copynumber: 4.7 Consensus size: 43
950554 ACAAGATCTT
* * * *
950564 TTGCGGCGTTTGTGGGAAAAATGCCGCAAAATCTCAAGACATA
1 TTGCGGCGTTTGTGGGAAAAACGCCGCTAAATCTCAACACCTA
* ** * * *
950607 TTGCGGTGTTTGTGTAAAAAAAAAAGCTGCTAAATCTCAATACCTA
1 TTGCGGCGTTTGTG---GGAAAAACGCCGCTAAATCTCAACACCTA
*
950653 TTGCGGCGTTTGTGGAAAAAACGCCGCTAAATCTCAACACCTA
1 TTGCGGCGTTTGTGGGAAAAACGCCGCTAAATCTCAACACCTA
* *
950696 TTGCGGCGTTTGTTGGAAAAACGCCGCTAAATATCAACACCTA
1 TTGCGGCGTTTGTGGGAAAAACGCCGCTAAATCTCAACACCTA
* * *
950739 TTGCAGCGTTTGTTGGACAAACGCCGCTA
1 TTGCGGCGTTTGTGGGAAAAACGCCGCTA
950768 TATATCGTTA
Statistics
Matches: 140, Mismatches: 18, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
43 105 0.75
46 35 0.25
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (43 bp):
TTGCGGCGTTTGTGGGAAAAACGCCGCTAAATCTCAACACCTA
Found at i:950773 original size:43 final size:43
Alignment explanation
Indices: 950516--950792 Score: 234
Period size: 43 Copynumber: 6.4 Consensus size: 43
950506 TATAGATATA
* ** * * *
950516 ACCTTTTGCGGCGTTTGTTTTAAAAAACGCAGCTATATA-CAAG
1 ACCTATTGCGGCGTTTG-TTGGAAAAACGCCGCTAAATATCAAC
* * * * * * *
950559 ATCTTTTGCGGCGTTTGTGGGAAAAATGCCGCAAAATCTCAAG
1 ACCTATTGCGGCGTTTGTTGGAAAAACGCCGCTAAATATCAAC
* * ** * * * *
950602 ACATATTGCGGTGTTTGTGTAAAAAAAAAAGCTGCTAAATCTCAAT
1 ACCTATTGCGGCGTTTGT-T--GGAAAAACGCCGCTAAATATCAAC
*
950648 ACCTATTGCGGCGTTTG-TGGAAAAAACGCCGCTAAATCTCAAC
1 ACCTATTGCGGCGTTTGTTGG-AAAAACGCCGCTAAATATCAAC
950691 ACCTATTGCGGCGTTTGTTGGAAAAACGCCGCTAAATATCAAC
1 ACCTATTGCGGCGTTTGTTGGAAAAACGCCGCTAAATATCAAC
* * * ***
950734 ACCTATTGCAGCGTTTGTTGGACAAACGCCGCTATATATCGTT
1 ACCTATTGCGGCGTTTGTTGGAAAAACGCCGCTAAATATCAAC
*
950777 ACCTGTTGCGGCGTTT
1 ACCTATTGCGGCGTTT
950793 TTTGTTACCA
Statistics
Matches: 192, Mismatches: 36, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
42 13 0.07
43 142 0.74
44 4 0.02
46 33 0.17
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (43 bp):
ACCTATTGCGGCGTTTGTTGGAAAAACGCCGCTAAATATCAAC
Found at i:951080 original size:33 final size:33
Alignment explanation
Indices: 951028--951090 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
951018 ATTATACTAT
* *
951028 GTTGATACTTACCAATGTAATCATGTGAATTAG
1 GTTGATACTTACCAATGTAAGCATGGGAATTAG
*
951061 GTTGATACTTA-CAGGTGTAAGCATGGGAAT
1 GTTGATACTTACCA-ATGTAAGCATGGGAAT
951091 CAAGATATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
32 2 0.08
33 24 0.92
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (33 bp):
GTTGATACTTACCAATGTAAGCATGGGAATTAG
Found at i:951559 original size:11 final size:11
Alignment explanation
Indices: 951545--951570 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
951535 TATATAAATT
951545 AATTATAGTAG
1 AATTATAGTAG
951556 AATTATAGTAG
1 AATTATAGTAG
951567 AATT
1 AATT
951571 CAACTTGTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.46, C:0.00, G:0.15, T:0.38
Consensus pattern (11 bp):
AATTATAGTAG
Found at i:951991 original size:33 final size:33
Alignment explanation
Indices: 951949--952030 Score: 137
Period size: 33 Copynumber: 2.5 Consensus size: 33
951939 GCCATCAGGT
*
951949 TGATACTTACAAGTGTAATCTAGGGAATTAGTG
1 TGATACTTACAAGTGTAATCTAGGAAATTAGTG
*
951982 TGATACTTACAAGTGTAATCTTGGAAATTAGTG
1 TGATACTTACAAGTGTAATCTAGGAAATTAGTG
*
952015 TTATACTTACAAGTGT
1 TGATACTTACAAGTGT
952031 GTAATCTTGA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 46 1.00
ACGTcount: A:0.33, C:0.10, G:0.21, T:0.37
Consensus pattern (33 bp):
TGATACTTACAAGTGTAATCTAGGAAATTAGTG
Found at i:952056 original size:35 final size:32
Alignment explanation
Indices: 951945--952067 Score: 133
Period size: 33 Copynumber: 3.7 Consensus size: 32
951935 CGGAGCCATC
*
951945 AGGTTGATACTTACAAGTGTAATCTAGGGAATT
1 AGGTTGATACTTACAAGTGTAATCT-TGGAATT
951978 A-GTGTGATACTTACAAGTGTAATCTTGGAAATT
1 AGGT-TGATACTTACAAGTGTAATCTTGG-AATT
*
952011 AGTGTT-ATACTTACAAGTGTGTAATCTTGAGAATA
1 AG-GTTGATACTTACAA--GTGTAATCTTG-GAATT
* *
952046 AGGTTGATACTTAAAAGCGTAA
1 AGGTTGATACTTACAAGTGTAA
952068 CATGGGAATC
Statistics
Matches: 78, Mismatches: 4, Indels: 16
0.80 0.04 0.16
Matches are distributed among these distances:
32 4 0.05
33 42 0.54
34 4 0.05
35 27 0.35
36 1 0.01
ACGTcount: A:0.35, C:0.09, G:0.22, T:0.34
Consensus pattern (32 bp):
AGGTTGATACTTACAAGTGTAATCTTGGAATT
Found at i:953683 original size:3 final size:3
Alignment explanation
Indices: 953677--953708 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
953667 TTCAAATTAC
953677 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
953709 AAAGCTTAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:956011 original size:23 final size:23
Alignment explanation
Indices: 955964--956013 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
955954 AATAACATAT
* **
955964 TAGGTATCGCTTATATAATGTAA
1 TAGGTAGCGCTTATATAATAAAA
955987 TAGGTAGCGCTTATATAATAAAA
1 TAGGTAGCGCTTATATAATAAAA
956010 TAGG
1 TAGG
956014 CATTTAACCG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.38, C:0.08, G:0.20, T:0.34
Consensus pattern (23 bp):
TAGGTAGCGCTTATATAATAAAA
Found at i:956073 original size:87 final size:87
Alignment explanation
Indices: 955927--956176 Score: 473
Period size: 87 Copynumber: 2.9 Consensus size: 87
955917 AATGTTATAT
*
955927 CATTTAACCGGAAATATTATCAAGTACAATAACATATTAGGTATCGCTTATATAATGTAATAGGT
1 CATTTAACCGGAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGT
955992 AGCGCTTATATAATAAAATAGG
66 AGCGCTTATATAATAAAATAGG
*
956014 CATTTAACCGGAAATATTATCAAGTGCAATAACATATTAGGTAGCGCTTATATAATGTAATAGGT
1 CATTTAACCGGAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGT
*
956079 AGCACTTATATAATAAAATAGG
66 AGCGCTTATATAATAAAATAGG
956101 CATTTAACCGGAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGT
1 CATTTAACCGGAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGT
956166 AGCGCTTATAT
66 AGCGCTTATAT
956177 TGACCTATTT
Statistics
Matches: 158, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
87 158 1.00
ACGTcount: A:0.40, C:0.12, G:0.16, T:0.32
Consensus pattern (87 bp):
CATTTAACCGGAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGT
AGCGCTTATATAATAAAATAGG
Found at i:956098 original size:23 final size:23
Alignment explanation
Indices: 956051--956100 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
956041 AATAACATAT
* **
956051 TAGGTAGCGCTTATATAATGTAA
1 TAGGTAGCACTTATATAATAAAA
956074 TAGGTAGCACTTATATAATAAAA
1 TAGGTAGCACTTATATAATAAAA
956097 TAGG
1 TAGG
956101 CATTTAACCG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.40, C:0.08, G:0.20, T:0.32
Consensus pattern (23 bp):
TAGGTAGCACTTATATAATAAAA
Found at i:956694 original size:199 final size:197
Alignment explanation
Indices: 956177--956835 Score: 606
Period size: 199 Copynumber: 3.3 Consensus size: 197
956167 GCGCTTATAT
* * * * * *
956177 TGACCTATTTTATAAGTAAACCGGTATATTTATACCGATAACATTGCAAATTTACCTATTACATT
1 TGACCTATTTTTTCA-TAAAACGGTATATTTATACCGGTTACATTGTAAATTTACCTATTACA-T
* * ** * * * * *
956242 A-TAATTATCGGTTTCAATTTTTTTG-GATCGATAC---AAATTGAAATGTATCGACACTTTATG
64 ACAAATAAAAGATATCGATGTTTTTGAGATCGATACTTTTAA-T-AAATGTATCGACACTTTATG
* * *
956302 TGCGCACCTCG-TTGGAATTCATTCTGGAAAAAAGTATCGACACAAACTTAA-AAAGTGTCGATA
127 TGTGCACCTCGTTTGGCATTCATTCTGGACAAAAGTATCGACACAAA-TTAACAAA-TGTCGATA
*
956365 CATTATTC
190 CATTATGC
* * ** * * * *
956373 AGACCTATTTTCTCATAAAACCGGTATATTCCTATCGGGTACATTGTAAATTTACCTATCACATT
1 TGACCTATTTTTTCATAAAA-CGGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATA
** * ** * * *
956438 GTAATGATCGATTTCGATGTTTTTGGGATTGATACTTTTAATAAATGTATCGACACTTTATGTGT
65 CAAATAAAAGATATCGATGTTTTTGAGATCGATACTTTTAATAAATGTATCGACACTTTATGTGT
* * * * * *
956503 GCAGC-CGTTTGGCATTCATTATGGACAAAATGTAGCAACACAAATTTAACAAATGCCGATACTT
130 GCACCTCGTTTGGCATTCATTCTGGACAAAA-GTATCGACACAAA-TTAACAAATGTCGATACAT
956567 TATGC
193 TATGC
* *
956572 TGACCTATTTTTTCATAAAACGGTATATTTATACCGGTTACATTGTAAATTTACATATTATATAC
1 TGACCTATTTTTTCATAAAACGGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATAC
*
956637 AAATTTAAAAG-TATCGAT-TTTATTGAGATCGATACTTTTAATAAATGTATCGACACTTTATGC
66 AAA--TAAAAGATATCGATGTTT-TTGAGATCGATACTTTTAATAAATGTATCGACACTTTATGT
* *
956700 ATGCACCTCGTTTGGGCATTCATTCTGGACAATAAGTATCGACACAAATTACACAAGTGTCGATA
128 GTGCACCTCGTTT-GGCATTCATTCTGGACAA-AAGTATCGACACAAATTA-ACAAATGTCGATA
*
956765 CATTATGT
190 CATTATGC
* * * *
956773 TGA-C-ATGTTTTC-TAATTAACTGTTATATTTATACCGGTTGCATTGTTAATTTACCTATTACA
1 TGACCTATTTTTTCATAA--AAC-GGTATATTTATACCGGTTACATTGTAAATTTACCTATTACA
956835 T
63 T
956836 TATAATTATT
Statistics
Matches: 380, Mismatches: 64, Indels: 33
0.80 0.13 0.07
Matches are distributed among these distances:
195 5 0.01
196 66 0.17
197 10 0.03
198 89 0.23
199 103 0.27
200 20 0.05
201 85 0.22
202 2 0.01
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.37
Consensus pattern (197 bp):
TGACCTATTTTTTCATAAAACGGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATAC
AAATAAAAGATATCGATGTTTTTGAGATCGATACTTTTAATAAATGTATCGACACTTTATGTGTG
CACCTCGTTTGGCATTCATTCTGGACAAAAGTATCGACACAAATTAACAAATGTCGATACATTAT
GC
Found at i:956802 original size:201 final size:196
Alignment explanation
Indices: 956282--956835 Score: 564
Period size: 201 Copynumber: 2.8 Consensus size: 196
956272 ATACAAATTG
* * *
956282 AAATGTATCGACACTTTATGTGCGCACCTCG-TTGGAATTCATTCTGGAAAAAAGTATCGACACA
1 AAATGTATCGACACTTTATGTGTGCACCTCGTTTGGCATTCATTCTGGACAAAAGTATCGACACA
* * * * ** *
956346 AACTTAAAAAGTGTCGATACATTAT-TCAGACCTATTTTCTCATAAAACCGGTATATTCCTATCG
66 AACTTAACAAGTGTCGATACATTATGT-TGACATATTTTCT-A-ATAA-CGGTATATTTATACCG
* * *** * ** * * *
956410 GGTACATTGTAAATTTACCTATCACATTGTAATGATCGATTTCGATGTTTTTGGGATTGATACTT
127 GTTACATTGTAAATTTACCTATTACATACAAATAAAAGATATCGATGTTTTTGAGATCGATACTT
956475 TTAAT
192 TTAAT
* * * *
956480 AAATGTATCGACACTTTATGTGTGCAGC-CGTTTGGCATTCATTATGGACAAAATGTAGCAACAC
1 AAATGTATCGACACTTTATGTGTGCACCTCGTTTGGCATTCATTCTGGACAAAA-GTATCGACAC
* * * * * *
956544 AAATTTAACAAATGCCGATACTTTATGCTGACCTATTTTTTCATAA-AACGGTATATTTATACCG
65 AAACTTAACAAGTGTCGATACATTATGTTGA-C-ATATTTTC-TAATAACGGTATATTTATACCG
* *
956608 GTTACATTGTAAATTTACATATTATATACAAATTTAAAAG-TATCGAT-TTTATTGAGATCGATA
127 GTTACATTGTAAATTTACCTATTACATACAAA--TAAAAGATATCGATGTTT-TTGAGATCGATA
956671 CTTTTAAT
189 CTTTTAAT
**
956679 AAATGTATCGACACTTTATGCATGCACCTCGTTTGGGCATTCATTCTGGACAATAAGTATCGACA
1 AAATGTATCGACACTTTATGTGTGCACCTCGTTT-GGCATTCATTCTGGACAA-AAGTATCGACA
* *
956744 CAAA-TTACACAAGTGTCGATACATTATGTTGACATGTTTTCTAATTAACTGTTATATTTATACC
64 CAAACTTA-ACAAGTGTCGATACATTATGTTGACATATTTTCTAA-TAAC-GGTATATTTATACC
* *
956808 GGTTGCATTGTTAATTTACCTATTACAT
126 GGTTACATTGTAAATTTACCTATTACAT
956836 TATAATTATT
Statistics
Matches: 292, Mismatches: 48, Indels: 29
0.79 0.13 0.08
Matches are distributed among these distances:
197 2 0.01
198 89 0.30
199 89 0.30
200 17 0.06
201 92 0.32
202 3 0.01
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.37
Consensus pattern (196 bp):
AAATGTATCGACACTTTATGTGTGCACCTCGTTTGGCATTCATTCTGGACAAAAGTATCGACACA
AACTTAACAAGTGTCGATACATTATGTTGACATATTTTCTAATAACGGTATATTTATACCGGTTA
CATTGTAAATTTACCTATTACATACAAATAAAAGATATCGATGTTTTTGAGATCGATACTTTTAA
T
Found at i:959403 original size:19 final size:19
Alignment explanation
Indices: 959358--959406 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
959348 TTACATTCAC
959358 ATACAAAATTATAAATCGT
1 ATACAAAATTATAAATCGT
** *
959377 ATGTAAAATTATAAATCTT
1 ATACAAAATTATAAATCGT
959396 ATACAAAATTA
1 ATACAAAATTA
959407 ACCCTACATT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.53, C:0.08, G:0.04, T:0.35
Consensus pattern (19 bp):
ATACAAAATTATAAATCGT
Found at i:961564 original size:200 final size:197
Alignment explanation
Indices: 960880--962045 Score: 1340
Period size: 200 Copynumber: 5.9 Consensus size: 197
960870 CGTGTTATTT
* * * * *
960880 AAAAAGTATCGACACAAATTTAAAAGTGTCGATACATTATATTGATCTATTCTCTCATAAAA-TA
1 AAAAAGTATCGACACAAATTCAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAATTG
* * * * *
960944 GTATATTTAAACCGGTTACATTATAAATTTACCTATTACGTTATAATTATCGGTTTCAATATTTT
66 GTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTAT-GGTTTCGATGTTTT
* ** * * * *
961009 TGGGATCAATACAATTT-CAAATGTATCAACACTTTTTGTC-TGCACCCCGTTTGACATTCATTC
130 TGGGATCGATACTTTTTAAAAATGTATCGACACTTTATG-CGTGCA-CCCGTTTGGCATTCATTC
961072 TGGAC
193 TGGAC
* * * * ** * *
961077 AAAATA-TATCGACACAAATTTAAAACATGTCAATGCATTATGTTCACCTATTTTCTCATAAAAC
1 AAAA-AGTATCGACACAAATTCAAAA-GTGTCGATACATTATGTAGACCTATTCTCTCATAAAAT
** * * *
961141 CAGTAAATTTATATCGGTTACATTGTAAATTTACCTATCACATTATAATTATCGGTTTCGATGTT
64 TGGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTAT-GGTTTCGATGTT
* ** * * * *
961206 TTTGGGATCAATACAATTT-CAAATGTATCGACACTTTTTGCCTGCACAACGTTTGGCATTCATT
128 TTTGGGATCGATACTTTTTAAAAATGTATCGACACTTTATGCGTGCAC-CCGTTTGGCATTCATT
961270 CTGGAC
192 CTGGAC
** * *
961276 AAAATA-TATCGACACAAA-TCTAAAACGTGTCGATACATTATGTTCACCTATTTTCTTATAAAA
1 AAAA-AGTATCGACACAAATTC-AAAA-GTGTCGATACATTATGTAGACCTATTCTCTCATAAAA
* * * * * *
961339 CTGATAAATTTATACTGGATACATTGTAAATTTACCTATTACATTATAAATATGAGTTTCGATGT
63 TTGGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATG-GTTTCGATGT
*
961404 TTTTGGGATCGATACTTTTTAAAAATGTATCGACACTTTATGCGTGCAACCCTTTTGGCATTCAT
127 TTTTGGGATCGATACTTTTTAAAAATGTATCGACACTTTATGCGTGC-ACCCGTTTGGCATTCAT
* *
961469 TTTAGAC
191 TCTGGAC
* *
961476 AAAAAGTATCGACACAAATTCCACAAGTGTCGTTACATTATGTAGACCTATTCTCTCATAAAATT
1 AAAAAGTATCGACACAAATT-CAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAATT
* *
961541 GGTATAGTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATGGGTTTCGATATTT
65 GGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTAT-GGTTTCGATGTTT
* * * **
961606 CTGGGATCGATACTTTTTATAAATGTATCGACACTTTATGCGTTCACCATTTTGGGCATTCATTC
129 TTGGGATCGATACTTTTTAAAAATGTATCGACACTTTATGCGTGCACCCGTTT-GGCATTCATTC
961671 TGGAC
193 TGGAC
* * *
961676 AAAAAGTATCGACACAAAATTCAAAAGTGTCGACACATTATGTAGACTTATTCTCACATAAAATT
1 AAAAAGTATCGACAC-AAATTCAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAATT
* * ** *
961741 GATATATTTATACCGGTTATATTACAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTT
65 GGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTAT-GGTTTCGATGTTT
* * * * * *
961806 TTGTGATCGATACTTTTTAAAAATGTATCAACAATGTATGCGTACACCACGTTTGGCATTCATTT
129 TTGGGATCGATACTTTTTAAAAATGTATCGACACTTTATGCGTGCACC-CGTTTGGCATTCATTC
*
961871 TGAAC
193 TGGAC
* * * * * * *
961876 AAAACGTATCGACACAAATTCCACAAGTGTCGATACATTATGTATATCTATTTTCTCAAAAAATC
1 AAAAAGTATCGACACAAATT-CAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAATT
961941 GGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATGT-TAGGTTTCGATGTT
65 GGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAAT-TAT-GGTTTCGATGTT
* *
962005 TTTGGAATCGATACTTTTTAAACATGTATCGACACTTTATG
128 TTTGGGATCGATACTTTTTAAAAATGTATCGACACTTTATG
962046 GTAAACTTTA
Statistics
Matches: 844, Mismatches: 107, Indels: 33
0.86 0.11 0.03
Matches are distributed among these distances:
197 23 0.03
198 35 0.04
199 260 0.31
200 509 0.60
201 16 0.02
202 1 0.00
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.38
Consensus pattern (197 bp):
AAAAAGTATCGACACAAATTCAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAATTG
GTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATGGTTTCGATGTTTTT
GGGATCGATACTTTTTAAAAATGTATCGACACTTTATGCGTGCACCCGTTTGGCATTCATTCTGG
AC
Found at i:966601 original size:199 final size:197
Alignment explanation
Indices: 966252--967075 Score: 980
Period size: 200 Copynumber: 4.1 Consensus size: 197
966242 TTTTAAAATG
* * * * * **
966252 GTATCGACACAAATTTAACAATTGCCGATACTTTATGCT-GACCTATTTTCTCATAAAACCGGTA
1 GTATCGACACAAA-TTAAAAAGTGTCGATACATTATG-TAGACCTATTCTCAAATAAAACCGGTA
* * * *
966316 TATTTATACCGGTTACATTAAAAAATTACCTATTACATTATAATCATGGGTTTCGATGTTTATGG
64 TATTTATACC-GTTACATTACAAAATTACCTATTACATTATAATTATGGGTTTCGATGTCTCTGG
* * *
966381 G-TCGATACTTTTTATAAATGTATCAACACTTTATGCGTGCACCACTTTTTCGGCATTCATTCTG
128 GATCGACACTTTTTAAAAATGTATCAACACTTTATGTGTGCACCA--TTTT-GGCATTCATTCTG
966445 GA-AAAAA
190 GACAAAAA
*
966452 TGTATCGACACATAATTAAAAAGTGTCGATACATTATGTAGACATATTCTCAAATAAAACCGGTA
1 -GTATCGACACA-AATTAAAAAGTGTCGATACATTATGTAGACCTATTCTCAAATAAAACCGGTA
966517 TATTTATACC-TGT-CATTACAAAATTACCTATTACATTATAATTATGGG-TTCGATGTCTCTGG
64 TATTTATACCGT-TACATTACAAAATTACCTATTACATTATAATTATGGGTTTCGATGTCTCTGG
*
966579 GATCGACACTTTTTAAAAATGTATCAACACTTTATGTGTTCACCATTTTGAGCATTCATTCTGGA
128 GATCGACACTTTTTAAAAATGTATCAACACTTTATGTGTGCACCATTTTG-GCATTCATTCTGGA
966644 CAAAAA
192 CAAAAA
* * * **
966650 GTATCAACACTAATTTAAAATGTGTCGATACATTATGTAGACCTATTCT-AATATAAAACCAATA
1 GTATCGACAC-AAATTAAAAAGTGTCGATACATTATGTAGACCTATTCTCAA-ATAAAACCGGTA
* * *
966714 TATTTATAACAGTTACATTACAAAATTACCTATTACATTATAATTATGGGTTTCAATGTCTCTGC
64 TATTTAT-ACCGTTACATTACAAAATTACCTATTACATTATAATTATGGGTTTCGATGTCTCTGG
* * * * *
966779 GATCGACACTTTTAAAAAATGTATCGACACTTTATGGGTGCACCCTTTTAGGCATTCCTTCTGGA
128 GATCGACACTTTTTAAAAATGTATCAACACTTTATGTGTGCACCATTTT-GGCATTCATTCTGGA
*
966844 CAAACA
192 CAAAAA
* * * * **
966850 GTATCGACACAAATTCCATAAGTGTAGATACATTATGTAGACTTATTCTCTCATAAAACCGGTAT
1 GTATCGACACAAATT-AAAAAGTGTCGATACATTATGTAGACCTATTCTCAAATAAAACCGGTAT
* ** * * * *
966915 AGTTATACCGATTACATTGTAAATTTACCTATTACATTATAATTATGGGTTTCGAGGTTTCTAGG
65 ATTTATACCG-TTACATTACAAAATTACCTATTACATTATAATTATGGGTTTCGATGTCTCTGGG
* * * * * *
966980 ATCGATACTTTTTATAAATGTATCGACACTTTATGTTTTCACCATTTTGGAAATTCATTCTGGAC
129 ATCGACACTTTTTAAAAATGTATCAACACTTTATGTGTGCACCATTTTGG-CATTCATTCTGGAC
967045 -AAAA
193 AAAAA
*
967049 GTATCGACACAAAATTCAAAAGTGTCG
1 GTATCGACAC-AAATTAAAAAGTGTCG
967076 TTGGGTAAAA
Statistics
Matches: 540, Mismatches: 65, Indels: 38
0.84 0.10 0.06
Matches are distributed among these distances:
196 3 0.01
197 78 0.14
198 22 0.04
199 140 0.26
200 233 0.43
201 62 0.11
202 2 0.00
ACGTcount: A:0.34, C:0.17, G:0.13, T:0.36
Consensus pattern (197 bp):
GTATCGACACAAATTAAAAAGTGTCGATACATTATGTAGACCTATTCTCAAATAAAACCGGTATA
TTTATACCGTTACATTACAAAATTACCTATTACATTATAATTATGGGTTTCGATGTCTCTGGGAT
CGACACTTTTTAAAAATGTATCAACACTTTATGTGTGCACCATTTTGGCATTCATTCTGGACAAA
AA
Found at i:968386 original size:55 final size:55
Alignment explanation
Indices: 968327--968687 Score: 360
Period size: 55 Copynumber: 6.6 Consensus size: 55
968317 ACGAGTTCGT
* * * *
968327 TCCCTATTCTTTCAGGGAGTATA-AGACTCGAACAATCTTTAACAAATGTGTCTGG
1 TCCCTATTCTTTCAGGGAGTATAGA-ACTCGAACAATCTTTAACAAACGGGTCCGC
* * * * *
968382 TCCCTATTCATTCAAGGAGTATA-AGACTCAAACAATCTTCAATAAACGGGTCCGC
1 TCCCTATTCTTTCAGGGAGTATAGA-ACTCGAACAATCTTTAACAAACGGGTCCGC
* *
968437 TCCCTATTCGTTCAAGGG-GTATAGAACTTGAACAAT-TTTCATA-AAACGGGTCCGC
1 TCCCTATTCTTTC-AGGGAGTATAGAACTCGAACAATCTTT-A-ACAAACGGGTCCGC
* * * *
968492 TCCCTATTCCTTT-AGAGAGTATAGAACTCGAAAAATCTTCAACAAATGGGTCCGC
1 TCCCTATT-CTTTCAGGGAGTATAGAACTCGAACAATCTTTAACAAACGGGTCCGC
* * * *
968547 TCTCTATTCCTTCAGAGAGTATAGAACTCGAACAATCTTTAACAAACGGGTTCGC
1 TCCCTATTCTTTCAGGGAGTATAGAACTCGAACAATCTTTAACAAACGGGTCCGC
* * * *
968602 TCCCTATT-TATTCAGGGAGTATAGAACTCAAAAAATCTTCATA-AAACAGGTCCGC
1 TCCCTATTCT-TTCAGGGAGTATAGAACTCGAACAATCTTTA-ACAAACGGGTCCGC
* * *
968657 TCTCTATTCCTTCAGAGAGTATAGAACTCGA
1 TCCCTATTCTTTCAGGGAGTATAGAACTCGA
968688 TCTTCATAAA
Statistics
Matches: 256, Mismatches: 38, Indels: 24
0.81 0.12 0.08
Matches are distributed among these distances:
54 9 0.04
55 236 0.92
56 11 0.04
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.29
Consensus pattern (55 bp):
TCCCTATTCTTTCAGGGAGTATAGAACTCGAACAATCTTTAACAAACGGGTCCGC
Found at i:968500 original size:110 final size:109
Alignment explanation
Indices: 968330--968687 Score: 415
Period size: 110 Copynumber: 3.3 Consensus size: 109
968320 AGTTCGTTCC
* * * * * *
968330 CTATTCTTTCAGGGAGTATA-AGACTCGAACAATCTTTAACAAATGTGTCTGGTCCCTATTCATT
1 CTATTCCTTCAGAGAGTATAGA-ACTCGAACAATCTTTAACAAACGGGTCCGCTCCCTATTCATT
*
968394 CAAGGAGTATA-AGACTCAAACAATCTTCAATAAACGGGTCCGCTCC
65 CAAGGAGTATAGA-ACTCAAA-AATCTTCAATAAACGGGTCCGCTCT
* * * *
968440 CTATTCGTTCA-AGGGGTATAGAACTTGAACAAT-TTTCATA-AAACGGGTCCGCTCCCTATTCC
1 CTATTCCTTCAGA-GAGTATAGAACTCGAACAATCTTT-A-ACAAACGGGTCCGCTCCCTATTCA
* * *
968502 TT-TAGAGAGTATAGAACTCGAAAAATCTTCAACAAATGGGTCCGCTCT
63 TTCAAG-GAGTATAGAACTC-AAAAATCTTCAATAAACGGGTCCGCTCT
* *
968550 CTATTCCTTCAGAGAGTATAGAACTCGAACAATCTTTAACAAACGGGTTCGCTCCCTATTTATTC
1 CTATTCCTTCAGAGAGTATAGAACTCGAACAATCTTTAACAAACGGGTCCGCTCCCTATTCATTC
* *
968615 AGGGAGTATAGAACTCAAAAAATCTTC-ATAAAACAGGTCCGCTCT
66 AAGGAGTATAGAACTC-AAAAATCTTCAAT-AAACGGGTCCGCTCT
968660 CTATTCCTTCAGAGAGTATAGAACTCGA
1 CTATTCCTTCAGAGAGTATAGAACTCGA
968688 TCTTCATAAA
Statistics
Matches: 211, Mismatches: 25, Indels: 24
0.81 0.10 0.09
Matches are distributed among these distances:
109 7 0.03
110 193 0.91
111 11 0.05
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (109 bp):
CTATTCCTTCAGAGAGTATAGAACTCGAACAATCTTTAACAAACGGGTCCGCTCCCTATTCATTC
AAGGAGTATAGAACTCAAAAATCTTCAATAAACGGGTCCGCTCT
Found at i:968569 original size:165 final size:165
Alignment explanation
Indices: 968327--968687 Score: 453
Period size: 165 Copynumber: 2.2 Consensus size: 165
968317 ACGAGTTCGT
* * * * * *
968327 TCCCTATT-CTTTCAGGGAGTATA-AGACTCGAACAATCTTTAACAAATGTGTCTGGTCCCTATT
1 TCCCTATTCCTTT-AGAGAGTATAGA-ACTCGAAAAATCTTCAACAAATGGGTCCGCTCCCTATT
* *
968390 CATTCAAGGAGTATA-AGACTCAAACAATCTTCAATAAACGGGTCCGCTCCCTATTCGTTCAAGG
64 CATTCAAGGAGTATAGA-ACTCAAACAATCTTCAACAAACGGGTCCGCTCCCTATTCATTC-AGG
** * * *
968454 G-GTATAGAACTTGAACAATTTTCATAAAACGGGTCCGC
127 GAGTATAGAACTCAAAAAATCTTCATAAAACAGGTCCGC
* *
968492 TCCCTATTCCTTTAGAGAGTATAGAACTCGAAAAATCTTCAACAAATGGGTCCGCTCTCTATTCC
1 TCCCTATTCCTTTAGAGAGTATAGAACTCGAAAAATCTTCAACAAATGGGTCCGCTCCCTATTCA
* * * *
968557 TTC-AGAGAGTATAGAACTCGAACAATCTTTAACAAACGGGTTCGCTCCCTATTTATTCAGGGAG
66 TTCAAG-GAGTATAGAACTCAAACAATCTTCAACAAACGGGTCCGCTCCCTATTCATTCAGGGAG
968621 TATAGAACTCAAAAAATCTTCATAAAACAGGTCCGC
130 TATAGAACTCAAAAAATCTTCATAAAACAGGTCCGC
* *
968657 TCTCTATTCCTTCAGAGAGTATAGAACTCGA
1 TCCCTATTCCTTTAGAGAGTATAGAACTCGA
968688 TCTTCATAAA
Statistics
Matches: 170, Mismatches: 21, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
164 6 0.04
165 158 0.93
166 6 0.04
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.29
Consensus pattern (165 bp):
TCCCTATTCCTTTAGAGAGTATAGAACTCGAAAAATCTTCAACAAATGGGTCCGCTCCCTATTCA
TTCAAGGAGTATAGAACTCAAACAATCTTCAACAAACGGGTCCGCTCCCTATTCATTCAGGGAGT
ATAGAACTCAAAAAATCTTCATAAAACAGGTCCGC
Found at i:968744 original size:37 final size:37
Alignment explanation
Indices: 968698--968773 Score: 118
Period size: 37 Copynumber: 2.1 Consensus size: 37
968688 TCTTCATAAA
*
968698 ATGAGTTTGCTTCACTACTCTTCTGTGAAGGATTATAG
1 ATGAGTTTGCTTCACTACTCTTCCGTGAAGGATTA-AG
*
968736 ATGA-TTTGCTTCACTACTCTTCCGTGAAGGCTTAAG
1 ATGAGTTTGCTTCACTACTCTTCCGTGAAGGATTAAG
968772 AT
1 AT
968774 TGACTTGTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
36 4 0.11
37 28 0.78
38 4 0.11
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.38
Consensus pattern (37 bp):
ATGAGTTTGCTTCACTACTCTTCCGTGAAGGATTAAG
Found at i:970070 original size:8 final size:8
Alignment explanation
Indices: 970059--970250 Score: 73
Period size: 9 Copynumber: 21.6 Consensus size: 8
970049 CCCTTTTTAT
970059 TTTTTTTC
1 TTTTTTTC
970067 TTTTTTCATC
1 TTTTTT--TC
*
970077 ATTTTTCTTT
1 -TTTTT-TTC
970087 TCTTTTTTC
1 T-TTTTTTC
970096 TTTTATTTTC
1 -TTT-TTTTC
* *
970106 CTATTTTC
1 TTTTTTTC
*
970114 TATTTTTC
1 TTTTTTTC
*
970122 TCTTTTTC
1 TTTTTTTC
*
970130 -TCTTTTC
1 TTTTTTTC
970137 ATTTTTTCATC
1 -TTTTTT--TC
*
970148 ATTTTTCATTT
1 -TTTTT--TTC
970159 TTTTTTTC
1 TTTTTTTC
970167 ATTTTTTTC
1 -TTTTTTTC
970176 ATTTTTTTC
1 -TTTTTTTC
*
970185 -ATTTTTC
1 TTTTTTTC
*
970192 ATTTTCTTC
1 -TTTTTTTC
* *
970201 ATTTTTTA
1 TTTTTTTC
*
970209 TTTTTTTT
1 TTTTTTTC
970217 TTATTTTTC
1 TT-TTTTTC
970226 TCTTTTTCATC
1 T-TTTTT--TC
970237 TTTTTTTTC
1 -TTTTTTTC
970246 TTTTT
1 TTTTT
970251 CAAGCTAAAT
Statistics
Matches: 141, Mismatches: 22, Indels: 42
0.69 0.11 0.20
Matches are distributed among these distances:
7 11 0.08
8 43 0.30
9 44 0.31
10 19 0.13
11 21 0.15
12 2 0.01
13 1 0.01
ACGTcount: A:0.09, C:0.15, G:0.00, T:0.77
Consensus pattern (8 bp):
TTTTTTTC
Found at i:970165 original size:37 final size:36
Alignment explanation
Indices: 970159--970252 Score: 69
Period size: 34 Copynumber: 2.8 Consensus size: 36
970149 TTTTTCATTT
*
970159 TTTTTTTCATTTTT--TTCATTTTTTTCAT-TTTTCA
1 TTTTTTTCATTTTTCATT-TTTTTTTTCATCTTTTCA
* *
970193 TTTTCTTCATTTTTTATTTTTTTTTT-AT-TTTTC-
1 TTTTTTTCATTTTTCATTTTTTTTTTCATCTTTTCA
* *
970226 TCTTTTTCATCTTTT--TTTTCTTTTTCA
1 TTTTTTTCAT-TTTTCATTTTTTTTTTCA
970253 AGCTAAATAT
Statistics
Matches: 51, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
32 9 0.18
33 9 0.18
34 24 0.47
35 7 0.14
36 2 0.04
ACGTcount: A:0.10, C:0.13, G:0.00, T:0.78
Consensus pattern (36 bp):
TTTTTTTCATTTTTCATTTTTTTTTTCATCTTTTCA
Found at i:970168 original size:30 final size:30
Alignment explanation
Indices: 970109--970190 Score: 96
Period size: 30 Copynumber: 2.7 Consensus size: 30
970099 TATTTTCCTA
*
970109 TTTTC-TATTTTTCTCTTTTTCTCTTTTCA-TT
1 TTTTCATATTTTTC-ATTTTT-T-TTTTCATTT
970140 TTTTCATCATTTTTCATTTTTTTTTTCATTT
1 TTTTCAT-ATTTTTCATTTTTTTTTTCATTT
*
970171 TTTTCATTTTTTTCATTTTT
1 TTTTCATATTTTTCATTTTT
970191 CATTTTCTTC
Statistics
Matches: 46, Mismatches: 2, Indels: 7
0.84 0.04 0.13
Matches are distributed among these distances:
30 18 0.39
31 15 0.33
32 6 0.13
33 7 0.15
ACGTcount: A:0.10, C:0.15, G:0.00, T:0.76
Consensus pattern (30 bp):
TTTTCATATTTTTCATTTTTTTTTTCATTT
Found at i:970212 original size:71 final size:70
Alignment explanation
Indices: 970060--970214 Score: 183
Period size: 71 Copynumber: 2.2 Consensus size: 70
970050 CCTTTTTATT
* *
970060 TTTTTTCTTTTTTCATCATTTTTCTTTTCTTTTTTCTTTTATTTTCCTATTTTCTATTTTTCTCT
1 TTTTTTATTTTTTCATCATTTTTCTTTTCTTTTTTCATTTATTTTCCTATTTTCTATTTTTCTCT
970125 TTTTC
66 TTTTC
* * *
970130 TCTTTTCATTTTTTCATCATTTTTCATTTT-TTTTTTCATTT-TTTTCAT-TTTTTTCATTTTTC
1 T-TTTTTATTTTTTCATCATTTTTC-TTTTCTTTTTTCATTTATTTTCCTATTTTCT-ATTTTTC
970192 AT-TTTCTTC
63 -TCTTT-TTC
970201 ATTTTTTATTTTTT
1 -TTTTTTATTTTTT
970215 TTTTATTTTT
Statistics
Matches: 73, Mismatches: 6, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
69 5 0.07
70 17 0.23
71 46 0.63
72 5 0.07
ACGTcount: A:0.10, C:0.15, G:0.00, T:0.75
Consensus pattern (70 bp):
TTTTTTATTTTTTCATCATTTTTCTTTTCTTTTTTCATTTATTTTCCTATTTTCTATTTTTCTCT
TTTTC
Found at i:970250 original size:7 final size:7
Alignment explanation
Indices: 970060--970242 Score: 63
Period size: 7 Copynumber: 23.9 Consensus size: 7
970050 CCTTTTTATT
970060 TTTTTTC
1 TTTTTTC
970067 TTTTTTC
1 TTTTTTC
970074 ATCATTTTTC
1 -T--TTTTTC
970084 --TTTTC
1 TTTTTTC
970089 TTTTTTC
1 TTTTTTC
970096 TTTTATTTTCC
1 --TT-TTTT-C
*
970107 TATTTTC
1 TTTTTTC
970114 TATTTTTC
1 T-TTTTTC
970122 TCTTTTTC
1 T-TTTTTC
*
970130 TCTTTTC
1 TTTTTTC
970137 ATTTTTTC
1 -TTTTTTC
970145 ATCATTTTTC
1 -T--TTTTTC
*
970155 -ATTTT-
1 TTTTTTC
970160 TTTTTTC
1 TTTTTTC
970167 ATTTTTTTC
1 --TTTTTTC
970176 ATTTTTTTC
1 --TTTTTTC
*
970185 ATTTTTC
1 TTTTTTC
970192 ATTTTCTTC
1 -TTTT-TTC
*
970201 ATTTTTTA
1 -TTTTTTC
970209 TTTTTT-
1 TTTTTTC
*
970215 TTTTAT-
1 TTTTTTC
*
970221 TTTTCTC
1 TTTTTTC
970228 TTTTTCATC
1 TTTTT--TC
970237 TTTTTT
1 TTTTTT
970243 TTCTTTTTCA
Statistics
Matches: 141, Mismatches: 13, Indels: 44
0.71 0.07 0.22
Matches are distributed among these distances:
5 5 0.04
6 18 0.13
7 36 0.26
8 31 0.22
9 34 0.24
10 16 0.11
11 1 0.01
ACGTcount: A:0.09, C:0.15, G:0.00, T:0.76
Consensus pattern (7 bp):
TTTTTTC
Found at i:979941 original size:44 final size:46
Alignment explanation
Indices: 979891--979984 Score: 138
Period size: 44 Copynumber: 2.1 Consensus size: 46
979881 AAAGAAATCC
* *
979891 TAACCGCATGATATCTAATTCGCATGC-TTATTC-AAAAATAAATA
1 TAACCGCATGATATCTAATTCGCATGCATTATTCGAAAAACAAAAA
*
979935 TAACCGCATGATATCTAGTTCGCATGCATTTATTCGAAAAACAAAAA
1 TAACCGCATGATATCTAATTCGCATGCA-TTATTCGAAAAACAAAAA
979982 TAA
1 TAA
979985 ATGACTCAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
44 26 0.59
46 6 0.14
47 12 0.27
ACGTcount: A:0.41, C:0.18, G:0.11, T:0.30
Consensus pattern (46 bp):
TAACCGCATGATATCTAATTCGCATGCATTATTCGAAAAACAAAAA
Found at i:981743 original size:2 final size:2
Alignment explanation
Indices: 981736--981763 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
981726 CTATAAATTA
981736 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
981764 GTGTGTGTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:983833 original size:200 final size:200
Alignment explanation
Indices: 983490--983849 Score: 621
Period size: 200 Copynumber: 1.8 Consensus size: 200
983480 GAGCATCTAC
* * *
983490 AGTATCGACACTAATTTAAAAAGTGTTGATACATTATGTAGACCTATTCTCGCATAAAATCGGTA
1 AGTATCGACACCAATTTAAAAAGTGTCGATACATTATGTAGACCTATTCTCACATAAAATCGGTA
* * * *
983555 TATTTATACCGGTTATATTACAAAATTACTTATTACATTTTAATTATGGGTTTCGATGTTTTTGG
66 TATTTATACCGGTTATATTACAAAATTACCTATTACATTATAATTATGAGTTTCGATATTTTTGG
*
983620 GATTGATACTTTTTATAAATGTATCGACACTTTATGCGTTCACCATTTTGGAAATTCATTCTAGA
131 GATCGATACTTTTTATAAATGTATCGACACTTTATGCGTTCACCATTTTGGAAATTCATTCTAGA
983685 CAAAA
196 CAAAA
983690 AGTATCGACACCAATTTAAAAAGTGTCGATACATTATGTAGACCTATTCTCACATAAAATCGGTA
1 AGTATCGACACCAATTTAAAAAGTGTCGATACATTATGTAGACCTATTCTCACATAAAATCGGTA
* *
983755 TATTTATACCGGTTATATTACAAAATTACCTATTATATTATAATTATGAGTTTTGATATTTTTGG
66 TATTTATACCGGTTATATTACAAAATTACCTATTACATTATAATTATGAGTTTCGATATTTTTGG
*
983820 GGTCGATACTTTTTATAAATGTATCGACAC
131 GATCGATACTTTTTATAAATGTATCGACAC
983850 ATCTGCTTAC
Statistics
Matches: 149, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
200 149 1.00
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.39
Consensus pattern (200 bp):
AGTATCGACACCAATTTAAAAAGTGTCGATACATTATGTAGACCTATTCTCACATAAAATCGGTA
TATTTATACCGGTTATATTACAAAATTACCTATTACATTATAATTATGAGTTTCGATATTTTTGG
GATCGATACTTTTTATAAATGTATCGACACTTTATGCGTTCACCATTTTGGAAATTCATTCTAGA
CAAAA
Found at i:984225 original size:19 final size:19
Alignment explanation
Indices: 984201--984250 Score: 82
Period size: 19 Copynumber: 2.6 Consensus size: 19
984191 TTACATTCAC
984201 ATACAAAATTAAAAATCGT
1 ATACAAAATTAAAAATCGT
* *
984220 ATACAAAATTATAAATCTT
1 ATACAAAATTAAAAATCGT
984239 ATACAAAATTAA
1 ATACAAAATTAA
984251 TCATACATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.58, C:0.10, G:0.02, T:0.30
Consensus pattern (19 bp):
ATACAAAATTAAAAATCGT
Done.