genome.fa.s8427.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008427.1 Hibiscus syriacus cultivar Beakdansim tig00111212_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  451641

Tables:   1   

This is table  1  of  1  ( 106 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13530--13563	2	17.5	2	87	6	52	47	2	0	50	1.16
15075--15111	17	2.2	17	95	0	65	78	5	8	8	1.09
15080--15144	21	3.4	19	82	12	71	75	4	13	6	1.15
27562--27598	19	2.1	18	85	14	51	81	2	13	2	0.92
30634--30684	22	2.3	22	93	0	93	21	43	13	21	1.87
31294--31319	9	2.9	9	100	0	52	11	23	0	65	1.25
33762--33822	18	3.3	19	76	17	65	50	9	14	24	1.73
35418--35474	10	5.6	10	75	10	53	78	12	8	0	0.95
35417--35474	11	5.5	11	84	12	68	79	12	8	0	0.94
35417--35481	19	3.2	20	82	8	69	76	13	7	1	1.06
38953--38993	14	2.7	15	85	14	57	14	24	0	60	1.34
39451--39494	18	2.4	18	96	0	79	15	27	0	56	1.40
48623--48728	50	2.3	46	83	16	123	33	3	11	51	1.55
56621--56676	19	2.9	19	91	2	85	42	7	12	37	1.70
58792--58833	21	2.0	21	85	0	57	19	30	16	33	1.94
66040--66104	26	2.6	24	75	13	69	12	12	12	63	1.54
67967--68022	25	2.3	25	84	6	71	58	12	14	14	1.63
77714--77797	24	3.5	24	71	0	78	35	17	17	28	1.93
80880--80918	13	3.0	13	100	0	78	30	30	0	38	1.58
86436--86485	19	2.6	20	87	9	77	12	8	18	62	1.53
93301--93364	9	6.8	9	71	28	53	62	1	18	17	1.41
95265--95331	28	2.4	28	92	0	116	20	37	19	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96186--96220	18	1.9	18	88	11	54	80	2	14	2	0.95
99776--99837	27	2.2	28	76	18	67	61	9	16	12	1.56
104169--104225	27	2.1	27	87	6	80	61	10	15	12	1.57
104699--104940	120	2.0	121	95	0	441	38	16	21	23	1.93
108354--108390	20	1.9	19	89	10	58	45	10	24	18	1.81
125854--126335	238	2.0	240	95	3	866	37	13	16	32	1.88
130168--130195	10	2.8	10	100	0	56	39	32	7	21	1.80
135112--135167	23	2.4	23	100	0	112	26	0	41	32	1.56
147351--147387	5	7.6	5	82	17	51	16	21	0	62	1.33
149287--149389	53	2.0	50	84	5	134	32	11	25	31	1.91
161346--161406	29	2.1	29	93	0	104	29	14	14	40	1.86
165369--165418	17	3.0	17	83	16	61	18	16	0	66	1.26
165705--165749	17	2.6	19	83	16	55	17	17	0	64	1.29
165288--165965	341	2.0	336	98	1	1302	30	23	10	36	1.87
166007--166041	5	6.8	5	87	6	52	82	0	17	0	0.66
166006--166079	8	9.2	8	72	5	51	77	1	17	4	1.00
168931--168981	22	2.3	22	96	0	93	33	27	15	23	1.95
173144--173227	24	3.5	24	77	9	82	29	16	19	34	1.94
174586--174623	19	2.1	19	90	5	60	0	13	5	81	0.85
180744--180882	71	2.0	71	81	8	167	21	21	19	37	1.94
198893--198955	27	2.4	26	81	2	81	19	23	0	57	1.41
200000--200062	27	2.4	26	81	2	81	19	23	0	57	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
201108--201170	27	2.4	26	81	2	81	19	23	0	57	1.41
205735--205813	27	3.0	24	75	15	77	20	24	0	55	1.43
208024--208086	27	2.4	26	81	2	81	19	23	0	57	1.41
218555--218584	3	10.0	3	100	0	60	0	0	33	66	0.92
219450--219588	71	2.0	71	86	0	197	20	24	20	34	1.96
228775--228852	23	3.2	24	74	15	81	62	0	15	21	1.32
231260--231314	24	2.3	24	80	0	65	30	18	12	38	1.88
232599--232631	17	1.9	17	88	11	50	0	18	3	78	0.87
240043--240098	27	2.2	24	77	17	67	41	23	12	23	1.88
240053--240109	27	2.1	27	96	0	105	45	22	15	15	1.84
249448--249496	22	2.2	22	96	0	89	46	14	10	28	1.77
257101--257130	15	2.1	14	93	6	51	26	33	3	36	1.73
261287--261337	19	2.6	20	87	3	68	45	5	15	33	1.71
265507--265566	28	2.1	28	93	0	102	26	16	16	40	1.90
265516--265574	28	2.1	28	93	0	100	28	15	15	40	1.87
269926--269974	21	2.3	21	79	6	55	81	2	6	10	0.94
283525--283575	19	2.6	20	93	3	86	45	5	13	35	1.68
298122--298299	90	2.0	90	92	0	293	44	6	12	36	1.67
304878--305055	90	2.0	90	93	0	302	44	7	11	36	1.69
311653--311816	90	1.8	90	88	5	251	45	7	11	35	1.68
314591--314658	26	2.6	26	90	0	100	17	32	19	30	1.95
314697--314741	23	2.0	23	86	0	63	26	26	13	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
315455--315505	26	1.9	27	88	11	79	66	15	13	3	1.39
316736--316778	23	1.9	21	81	13	50	32	18	11	37	1.87
318479--318546	26	2.6	26	90	0	100	20	35	16	27	1.94
319309--319360	19	2.5	20	84	9	61	42	5	11	40	1.65
324245--324273	15	1.9	15	100	0	58	17	34	0	48	1.47
325498--325526	2	14.5	2	100	0	58	51	0	0	48	1.00
329369--329410	6	6.7	6	86	5	57	0	16	4	78	0.91
342313--342363	20	2.6	20	90	3	77	35	15	5	43	1.71
347539--347636	30	3.3	30	100	0	196	17	20	13	48	1.80
349972--350016	17	2.6	19	83	16	55	15	17	0	66	1.25
350269--350331	19	3.3	18	82	14	65	74	6	14	4	1.18
355449--355493	13	3.5	13	84	3	56	35	35	2	26	1.69
355515--355559	17	2.6	19	83	16	55	17	17	0	64	1.29
360272--360323	21	2.5	21	96	0	95	15	28	0	55	1.40
363109--363202	47	2.0	47	91	0	152	21	20	28	29	1.98
365630--365746	35	3.3	35	89	1	171	23	35	5	35	1.77
365630--365777	71	2.1	70	80	7	156	25	35	4	35	1.75
367572--367610	16	2.4	17	87	8	55	25	23	0	51	1.49
370981--371023	20	2.2	20	87	4	61	34	9	6	48	1.62
381507--381533	14	1.9	14	100	0	54	7	3	7	81	0.97
385917--385961	17	2.6	19	83	16	55	64	0	17	17	1.29
393688--393749	18	3.5	18	70	23	51	75	3	19	1	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
408636--408674	13	2.9	13	96	3	69	69	7	20	2	1.26
418007--418066	30	2.0	31	87	9	88	53	8	8	30	1.60
419091--419174	24	3.5	24	80	3	89	28	17	19	34	1.95
421509--421562	21	2.7	21	91	5	85	35	12	5	46	1.66
425459--425510	21	2.6	21	90	6	81	34	13	5	46	1.67
429403--429454	21	2.6	21	90	6	81	34	13	5	46	1.67
430428--430469	19	2.2	19	91	8	68	59	0	14	26	1.35
430883--430934	19	2.6	21	90	6	81	46	5	13	34	1.67
431831--431890	30	2.0	31	86	3	86	53	10	8	28	1.63
432918--433001	24	3.5	24	79	6	82	29	16	19	34	1.94
437546--437607	17	3.7	17	72	18	58	3	19	4	72	1.17
437546--437604	25	2.4	25	74	5	66	3	20	3	72	1.13
440436--440465	11	2.6	11	94	5	51	0	10	0	90	0.47
440436--440465	15	2.1	14	93	6	51	0	10	0	90	0.47
440718--440759	18	2.4	18	81	14	52	61	0	11	26	1.30
441166--441217	19	2.6	21	90	6	81	46	5	13	34	1.67
444211--444504	149	2.0	148	93	0	498	39	12	12	34	1.82
446125--446151	11	2.5	11	100	0	54	74	18	7	0	1.05

Tables:   1

The End!