Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008428.1 Hibiscus syriacus cultivar Beakdansim tig00111213_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 6915314
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 20 of 30
Found at i:4562764 original size:64 final size:64
Alignment explanation
Indices: 4562676--4562814 Score: 181
Period size: 64 Copynumber: 2.2 Consensus size: 64
4562666 TCCAATCTTG
* * *
4562676 TGTTGTTTCGAGTCCAATATCCTTCACTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGT
1 TGTT-TTTTGAGTCCAATATCCTTCACTGTGAAGTTAAAATTGACTCTGAATAAAACTGAAAAGT
* ** * *
4562741 TGTTTTTTGAGTCGAATATCCTTCGTTGTGAAGTTAAAATTGCCTCTGAATAAAACTGGAAAGT
1 TGTTTTTTGAGTCCAATATCCTTCACTGTGAAGTTAAAATTGACTCTGAATAAAACTGAAAAGT
4562805 T-TTTTATTGA
1 TGTTTT-TTGA
4562815 CAGTCGCCCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
63 4 0.06
64 57 0.88
65 4 0.06
ACGTcount: A:0.29, C:0.13, G:0.19, T:0.38
Consensus pattern (64 bp):
TGTTTTTTGAGTCCAATATCCTTCACTGTGAAGTTAAAATTGACTCTGAATAAAACTGAAAAGT
Found at i:4563115 original size:32 final size:32
Alignment explanation
Indices: 4563074--4563162 Score: 99
Period size: 32 Copynumber: 2.8 Consensus size: 32
4563064 TTCACATCTG
* *
4563074 GATGTTGAATCCCCAAAGATGCCCCAATATTC
1 GATGTTGAATCTCCAAAGATGCCCCAACATTC
* * * *
4563106 GATGTTGAATCTCTAACA-ATACCTCAACATTT
1 GATGTTGAATCTCCAA-AGATGCCCCAACATTC
*
4563138 GATGTTGAATCTTCAAAGATGCCCC
1 GATGTTGAATCTCCAAAGATGCCCC
4563163 CATTGTCCCT
Statistics
Matches: 45, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
31 1 0.02
32 43 0.96
33 1 0.02
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (32 bp):
GATGTTGAATCTCCAAAGATGCCCCAACATTC
Found at i:4564200 original size:22 final size:21
Alignment explanation
Indices: 4564175--4564223 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
4564165 GCTTATTGTC
4564175 TTCTTTTTTCACTTT-TTTGCTT
1 TTCTTTTTTCACTTTGTTT--TT
* *
4564197 TTCTATTTTCTCTTTGTTTTT
1 TTCTTTTTTCACTTTGTTTTT
4564218 TTCTTT
1 TTCTTT
4564224 ATTTTTTTCT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
21 7 0.30
22 13 0.57
23 3 0.13
ACGTcount: A:0.04, C:0.16, G:0.04, T:0.76
Consensus pattern (21 bp):
TTCTTTTTTCACTTTGTTTTT
Found at i:4572096 original size:144 final size:141
Alignment explanation
Indices: 4571921--4572183 Score: 343
Period size: 141 Copynumber: 1.8 Consensus size: 141
4571911 AAAAAATACT
* * * * *
4571921 TTATAGATTAATAAGATCAAATTTAATTAAAATAGAGATTGAGATAG-AGTCCTATTTAAAGATA
1 TTATAGATTAATAAGATCAAATTTAACTAAAATAAAGATAGAGACAGAAGTCATATTTAAAG---
4571985 ATTAAACTCTAAAAGAAGT-AGTTTACGAAATATATTTTAGAATTAAAATAAATAAATAGTATAA
63 A-TAAACTCTAAAAGAAGTCA-TTTACGAAATATATTTTAGAATTAAAATAAATAAATAGTATAA
4572049 TATAATATAAAAAAAA
126 TATAATATAAAAAAAA
* * * *
4572065 TTATTGATTGATAAGATCAAA-TTAAGCTAAAATAAATATAGAGACAGAAGTTATATTTAAAGAT
1 TTATAGATTAATAAGATCAAATTTAA-CTAAAATAAAGATAGAGACAGAAGTCATATTTAAAGAT
* * *
4572129 CAACTCTAAAATAAGTCATTTACGGAATATATTTTAGAATTAAAATAAATAAATA
65 AAACTCTAAAAGAAGTCATTTACGAAATATATTTTAGAATTAAAATAAATAAATA
4572184 ATGTAATAGA
Statistics
Matches: 104, Mismatches: 12, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
141 51 0.49
142 2 0.02
143 4 0.04
144 35 0.34
145 12 0.12
ACGTcount: A:0.51, C:0.05, G:0.11, T:0.33
Consensus pattern (141 bp):
TTATAGATTAATAAGATCAAATTTAACTAAAATAAAGATAGAGACAGAAGTCATATTTAAAGATA
AACTCTAAAAGAAGTCATTTACGAAATATATTTTAGAATTAAAATAAATAAATAGTATAATATAA
TATAAAAAAAA
Found at i:4578666 original size:17 final size:16
Alignment explanation
Indices: 4578644--4578677 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
4578634 TAAAAACAGT
4578644 AAATAAAAAGATAAATA
1 AAATAAAAAGA-AAATA
*
4578661 AAATAAGAAGAAAATA
1 AAATAAAAAGAAAATA
4578677 A
1 A
4578678 TCCTCCCGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.76, C:0.00, G:0.09, T:0.15
Consensus pattern (16 bp):
AAATAAAAAGAAAATA
Found at i:4587734 original size:17 final size:16
Alignment explanation
Indices: 4587712--4587745 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
4587702 TAAAAAAAGT
4587712 AAATAAAAAGATAAATA
1 AAATAAAAAGA-AAATA
*
4587729 AAATAAGAAGAAAATA
1 AAATAAAAAGAAAATA
4587745 A
1 A
4587746 TCCTCACGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.76, C:0.00, G:0.09, T:0.15
Consensus pattern (16 bp):
AAATAAAAAGAAAATA
Found at i:4589384 original size:24 final size:24
Alignment explanation
Indices: 4589332--4589386 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 24
4589322 GAGCCATTTT
* * *
4589332 GAGAGTTAGAGAGTTTTAGAATTT
1 GAGAGTTAGAAAGTTTGAGAATTA
*
4589356 CAGAGTTAGAAAGTTTGAGAATTA
1 GAGAGTTAGAAAGTTTGAGAATTA
4589380 GAGAGTT
1 GAGAGTT
4589387 TAAAAGATTG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.36, C:0.02, G:0.29, T:0.33
Consensus pattern (24 bp):
GAGAGTTAGAAAGTTTGAGAATTA
Found at i:4589735 original size:169 final size:167
Alignment explanation
Indices: 4589484--4589797 Score: 422
Period size: 169 Copynumber: 1.9 Consensus size: 167
4589474 ATGGGGAATG
* * *
4589484 CACTTCTCCTAGGACGAGCCTTTCGTTTTTATTAGATTTTATCTGCATTATTTCAATTATACAAA
1 CACTTCCCCTAGGACGAGCCTTTCGTTTTTATTAGATTTTATCTGCATCATTTAAATTATACAAA
* *
4589549 ATATGATGTTGGAAGTTGGGGAACTATTACCAT-CAACCCAATTTATG-TAGGATGGGATGAGAC
66 ATATGATATTAGAAGTTGGGGAACTATT-CC-TCCAACCCAATTTATGTTA-GATGGGATGAGAC
4589612 ACTATGACATGGTAGAGAGATTTTGGGGGGAAAAGGGAAAA
128 ACTATGACATGGT-GAGAGATTTTGGGGGGAAAAGGGAAAA
* * * *
4589653 CACTTCCCCT-GGAACGAGCCTTTCTTTTTTGTCATA-ATTTT-TGTGCATCATTTAAATTATTC
1 CACTTCCCCTAGG-ACGAGCCTTTCGTTTTTAT--TAGATTTTATCTGCATCATTTAAATTATAC
* *
4589715 AAAATATTATATTAGAAGTTGGGGAACTATTCCTGCCAACCCAATTTATGTTAGATGTGATGAGA
63 AAAATATGATATTAGAAGTTGGGGAACTATTCCT-CCAACCCAATTTATGTTAGATGGGATGAGA
4589780 CACTATGACATGGTGAGA
127 CACTATGACATGGTGAGA
4589798 TTCTCTGAAA
Statistics
Matches: 128, Mismatches: 11, Indels: 13
0.84 0.07 0.09
Matches are distributed among these distances:
167 1 0.01
168 8 0.06
169 110 0.86
170 7 0.05
171 2 0.02
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.34
Consensus pattern (167 bp):
CACTTCCCCTAGGACGAGCCTTTCGTTTTTATTAGATTTTATCTGCATCATTTAAATTATACAAA
ATATGATATTAGAAGTTGGGGAACTATTCCTCCAACCCAATTTATGTTAGATGGGATGAGACACT
ATGACATGGTGAGAGATTTTGGGGGGAAAAGGGAAAA
Found at i:4590016 original size:32 final size:32
Alignment explanation
Indices: 4589982--4590159 Score: 216
Period size: 32 Copynumber: 5.6 Consensus size: 32
4589972 TACATTAAAT
* * * *
4589982 ATAAAAACATATACATACACATTAAACGGTAT
1 ATAAAAACATAGACATACACCTTAAACAGTAA
* * *
4590014 ATAAAATCATAGGCATAAACCTTAAACAGTAA
1 ATAAAAACATAGACATACACCTTAAACAGTAA
*
4590046 ATAAAAACATAGACATAC-CTTTTAAACAGTAA
1 ATAAAAACATAGACATACAC-CTTAAACAGTAA
*
4590078 ATAAAAATATAGACATACACCTTAAACAGTAA
1 ATAAAAACATAGACATACACCTTAAACAGTAA
* *
4590110 ATAAAAACATAAACATGC-CCTTAAACAGTAA
1 ATAAAAACATAGACATACACCTTAAACAGTAA
* *
4590141 ATGAAATCATAGACATACA
1 ATAAAAACATAGACATACA
4590160 ACTTTTTTTT
Statistics
Matches: 123, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
31 28 0.23
32 94 0.76
33 1 0.01
ACGTcount: A:0.54, C:0.16, G:0.07, T:0.22
Consensus pattern (32 bp):
ATAAAAACATAGACATACACCTTAAACAGTAA
Found at i:4590864 original size:14 final size:14
Alignment explanation
Indices: 4590841--4590870 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
4590831 ACTAAAAAAC
4590841 CATTACAATTCAAA
1 CATTACAATTCAAA
*
4590855 CATTATAATTCAAA
1 CATTACAATTCAAA
4590869 CA
1 CA
4590871 ATTCTATTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (14 bp):
CATTACAATTCAAA
Found at i:4592189 original size:2 final size:2
Alignment explanation
Indices: 4592182--4592206 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
4592172 GTATTGAAAT
4592182 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
4592207 CATTCTATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:4592201 original size:72 final size:70
Alignment explanation
Indices: 4592119--4592250 Score: 246
Period size: 72 Copynumber: 1.9 Consensus size: 70
4592109 CACCTATTTA
4592119 ATATATATATATATATCATTCTATAATAATAATAAAATATTTAAAAAAATTCAGTATTGAAATTA
1 ATATATATATATATATCATTCTATAATAATAATAAAATATTT-AAAAAA-TCAGTATTGAAATTA
4592184 TATATAT
64 TATATAT
4592191 ATATATATATATATATCATTCTATAATAATAATAAAATATTTAAAAAATCAGTATTGAAA
1 ATATATATATATATATCATTCTATAATAATAATAAAATATTTAAAAAATCAGTATTGAAA
4592251 ATATCTTGAT
Statistics
Matches: 60, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
70 12 0.20
71 6 0.10
72 42 0.70
ACGTcount: A:0.52, C:0.05, G:0.03, T:0.40
Consensus pattern (70 bp):
ATATATATATATATATCATTCTATAATAATAATAAAATATTTAAAAAATCAGTATTGAAATTATA
TATAT
Found at i:4594149 original size:24 final size:24
Alignment explanation
Indices: 4594122--4594171 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
4594112 TGGCAGTACC
4594122 CCTCCCATTAATTAAAATCCCTAA
1 CCTCCCATTAATTAAAATCCCTAA
* *
4594146 CCTCCCCTTAATTGAAATCCCTAA
1 CCTCCCATTAATTAAAATCCCTAA
4594170 CC
1 CC
4594172 CTATTTCCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.32, C:0.38, G:0.02, T:0.28
Consensus pattern (24 bp):
CCTCCCATTAATTAAAATCCCTAA
Found at i:4597677 original size:30 final size:30
Alignment explanation
Indices: 4597633--4597714 Score: 87
Period size: 33 Copynumber: 2.7 Consensus size: 30
4597623 AATAATTTAA
* **
4597633 TTATT-ATTAAAATATTAT-TTTTTATAATT
1 TTATTAATAAAAATATTATATTGGTAT-ATT
4597662 TTATTAATAAAAATATTAATATTGGTATATT
1 TTATTAATAAAAATATT-ATATTGGTATATT
4597693 TTATTGAAATAAAAATATTATA
1 TTATT--AATAAAAATATTATA
4597715 AATCATATTA
Statistics
Matches: 45, Mismatches: 3, Indels: 7
0.82 0.05 0.13
Matches are distributed among these distances:
29 5 0.11
30 10 0.22
31 10 0.22
32 8 0.18
33 12 0.27
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (30 bp):
TTATTAATAAAAATATTATATTGGTATATT
Found at i:4597802 original size:23 final size:22
Alignment explanation
Indices: 4597754--4597821 Score: 55
Period size: 23 Copynumber: 3.0 Consensus size: 22
4597744 GTGTTATATT
**
4597754 ATATTTTAAAATATTAATTAGT
1 ATATTTTAAAATATTAATTAAA
* *
4597776 ATATTTTAAATATCTTTATTAAA
1 ATATTTTAAA-ATATTAATTAAA
* *
4597799 ATATTATAAGATTATTATATTAA
1 ATATTTTAA-AATATTA-ATTAA
4597822 TATTAAATAT
Statistics
Matches: 35, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
22 10 0.29
23 19 0.54
24 6 0.17
ACGTcount: A:0.46, C:0.01, G:0.03, T:0.50
Consensus pattern (22 bp):
ATATTTTAAAATATTAATTAAA
Found at i:4597820 original size:8 final size:8
Alignment explanation
Indices: 4597792--4597955 Score: 58
Period size: 8 Copynumber: 20.6 Consensus size: 8
4597782 TAAATATCTT
*
4597792 TATTAAAA
1 TATTATAA
4597800 TATTATAA
1 TATTATAA
* *
4597808 GATTATTA
1 TATTATAA
4597816 TA-T-TAA
1 TATTATAA
4597822 TATTA-AA
1 TATTATAA
4597829 TATATAAATAA
1 TAT-T--ATAA
*
4597840 TATTATTCA
1 TATTA-TAA
*
4597849 TTTTAATAA
1 TATT-ATAA
4597858 T-TTAATAA
1 TATT-ATAA
4597866 TATTATTAA
1 TATTA-TAA
* *
4597875 AATAATAA
1 TATTATAA
*
4597883 TATAAT-A
1 TATTATAA
* *
4597890 TCTTATAT
1 TATTATAA
4597898 TATTATAA
1 TATTATAA
*
4597906 TA-TA-AT
1 TATTATAA
**
4597912 TGATTATTT
1 T-ATTATAA
4597921 TATTATAA
1 TATTATAA
4597929 TATTA-AA
1 TATTATAA
*
4597936 -AATATAA
1 TATTATAA
*
4597943 TATTATAT
1 TATTATAA
4597951 TATTA
1 TATTA
4597956 GAAATATTAA
Statistics
Matches: 117, Mismatches: 23, Indels: 32
0.68 0.13 0.19
Matches are distributed among these distances:
6 9 0.08
7 19 0.16
8 63 0.54
9 18 0.15
10 3 0.03
11 5 0.04
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (8 bp):
TATTATAA
Found at i:4597909 original size:23 final size:23
Alignment explanation
Indices: 4597879--4597931 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
4597869 TATTAAAATA
*
4597879 ATAATATAATAT-CTTATATTATT
1 ATAATATAAT-TGATTATATTATT
*
4597902 ATAATATAATTGATTATTTTATT
1 ATAATATAATTGATTATATTATT
4597925 ATAATAT
1 ATAATAT
4597932 TAAAAATATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
22 1 0.04
23 26 0.96
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (23 bp):
ATAATATAATTGATTATATTATT
Found at i:4597949 original size:22 final size:23
Alignment explanation
Indices: 4597921--4597967 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
4597911 TTGATTATTT
4597921 TATTATAATATTAAAAATA-TAA
1 TATTATAATATTAAAAATATTAA
* *
4597943 TATTATATTATTAGAAATATTAA
1 TATTATAATATTAAAAATATTAA
4597966 TA
1 TA
4597968 AATATATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 17 0.77
23 5 0.23
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (23 bp):
TATTATAATATTAAAAATATTAA
Found at i:4597972 original size:22 final size:22
Alignment explanation
Indices: 4597929--4597972 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
4597919 TTTATTATAA
*
4597929 TATTAAAAATATAATATTATAT
1 TATTAAAAATATAATATAATAT
*
4597951 TATTAGAAATATTAATA-AATAT
1 TATTAAAAATA-TAATATAATAT
4597973 ATTTTAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (22 bp):
TATTAAAAATATAATATAATAT
Found at i:4598013 original size:14 final size:13
Alignment explanation
Indices: 4597978--4598020 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 13
4597968 AATATATTTT
*
4597978 AAATATTTTAATA
1 AAATATTTTATTA
4597991 ATTAATATTTTGATTA
1 A--AATATTTT-ATTA
4598007 AAATATTTTATTA
1 AAATATTTTATTA
4598020 A
1 A
4598021 TATTAAATTC
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
13 6 0.23
14 8 0.31
15 8 0.31
16 4 0.15
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (13 bp):
AAATATTTTATTA
Found at i:4611449 original size:29 final size:29
Alignment explanation
Indices: 4611366--4611484 Score: 157
Period size: 29 Copynumber: 4.0 Consensus size: 29
4611356 AAGCAAGACT
*
4611366 AAGCACCAACAGGTACAGAGATCCATATAA
1 AAGCACCAACAGGTACAGACATCCATAT-A
*
4611396 AGCGAGCACCAACAGGTACACACATCCATATA
1 A---AGCACCAACAGGTACAGACATCCATATA
* *
4611428 AAGCTCCAACAGGTACAAACATCCATATA
1 AAGCACCAACAGGTACAGACATCCATATA
*
4611457 AAGCCCCAACAGGTACAGACATCCATAT
1 AAGCACCAACAGGTACAGACATCCATAT
4611485 GCATAAGATT
Statistics
Matches: 80, Mismatches: 6, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
29 52 0.65
30 1 0.01
32 2 0.03
33 25 0.31
ACGTcount: A:0.43, C:0.29, G:0.14, T:0.14
Consensus pattern (29 bp):
AAGCACCAACAGGTACAGACATCCATATA
Found at i:4617035 original size:34 final size:34
Alignment explanation
Indices: 4616992--4617061 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
4616982 TGGTGTCTTT
4616992 GAATTGATGAAAGAGCTAATCAGAGATGATAAAG
1 GAATTGATGAAAGAGCTAATCAGAGATGATAAAG
4617026 GAATTGATGAAAGAGCTAATCAGAGATGATAAAG
1 GAATTGATGAAAGAGCTAATCAGAGATGATAAAG
4617060 GA
1 GA
4617062 GCATACACCA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.47, C:0.06, G:0.27, T:0.20
Consensus pattern (34 bp):
GAATTGATGAAAGAGCTAATCAGAGATGATAAAG
Found at i:4619218 original size:17 final size:17
Alignment explanation
Indices: 4619196--4619231 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
4619186 ACATAATGAT
*
4619196 ATAACATATGTAAGCTA
1 ATAACACATGTAAGCTA
*
4619213 ATAACACATGTATGCTA
1 ATAACACATGTAAGCTA
4619230 AT
1 AT
4619232 GTATAAGACT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.44, C:0.14, G:0.11, T:0.31
Consensus pattern (17 bp):
ATAACACATGTAAGCTA
Found at i:4621160 original size:5 final size:5
Alignment explanation
Indices: 4621150--4621178 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
4621140 CCACTAACTT
4621150 TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
4621179 TATATATTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (5 bp):
TTTTA
Found at i:4621226 original size:126 final size:123
Alignment explanation
Indices: 4621078--4621398 Score: 509
Period size: 125 Copynumber: 2.6 Consensus size: 123
4621068 CTCTTATTAC
*
4621078 TCGACCTTGTGGTGATCCGATCCGAGGTAAGATCCACATTATTATGGTTCGAACTCTGCTATCCA
1 TCGACCTTGTGGTGA-CCGATCCG-GGTAAGATCCACATTATTATGGTTCGAACTCTGCTAACCA
4621143 CTAACTTTTTTATTTTATTTTATTTTATTTTATTTTTATATATTTGTTTTCATTATTCGAT
64 CTAACTTTTTTATTTTA-TTTATTTTATTTTATTTTTATATATTTGTTTTCATTATTCGAT
* * *
4621204 TCGACCTTGTGGTGACCTGATCCTGGGTAAGATCCACATTATTATGGTTTGGACTTTGCTAACCA
1 TCGACCTTGTGGTGACC-GATCC-GGGTAAGATCCACATTATTATGGTTCGAACTCTGCTAACCA
4621269 CTAACTTTTTTATTTTATTTATTTTATTTTATTTTTATATATTTGTTTTCATTATTCGAT
64 CTAACTTTTTTATTTTATTTATTTTATTTTATTTTTATATATTTGTTTTCATTATTCGAT
* *
4621329 TCGACCTTGTGGTGACCCGATCCGGAGTAAGATCCACATTATTATGGTTC-AGACTCTACGAACC
1 TCGACCTTGTGGTGA-CCGATCCGG-GTAAGATCCACATTATTATGGTTCGA-ACTCTGCTAACC
4621393 ACTAAC
63 ACTAAC
4621399 CGCTAACTTT
Statistics
Matches: 181, Mismatches: 9, Indels: 11
0.90 0.04 0.05
Matches are distributed among these distances:
124 2 0.01
125 103 0.57
126 75 0.41
127 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.15, T:0.45
Consensus pattern (123 bp):
TCGACCTTGTGGTGACCGATCCGGGTAAGATCCACATTATTATGGTTCGAACTCTGCTAACCACT
AACTTTTTTATTTTATTTATTTTATTTTATTTTTATATATTTGTTTTCATTATTCGAT
Found at i:4621295 original size:14 final size:14
Alignment explanation
Indices: 4621276--4621302 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
4621266 CCACTAACTT
4621276 TTTTATTTTATTTA
1 TTTTATTTTATTTA
4621290 TTTTATTTTATTT
1 TTTTATTTTATTT
4621303 TTATATATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTTATTTTATTTA
Found at i:4621487 original size:35 final size:33
Alignment explanation
Indices: 4621414--4621512 Score: 121
Period size: 35 Copynumber: 2.9 Consensus size: 33
4621404 ACTTTTCTAA
*
4621414 CTTACTAACATTCTAAC-TTTTATTTTATTGTT
1 CTTACTAACATACTAACTTTTTATTTTATTGTT
* *
4621446 CATACTAACATACTGACTTTTTTATTTTTATTGTT
1 CTTACTAACATACTAAC-TTTTTA-TTTTATTGTT
4621481 CTTACTAAC-TCACTAACATTTTTATTTTATTG
1 CTTACTAACAT-ACTAAC-TTTTTATTTTATTG
4621513 CACAAACTAA
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
32 14 0.25
34 14 0.25
35 29 0.51
ACGTcount: A:0.26, C:0.16, G:0.04, T:0.54
Consensus pattern (33 bp):
CTTACTAACATACTAACTTTTTATTTTATTGTT
Found at i:4626215 original size:90 final size:90
Alignment explanation
Indices: 4626028--4626294 Score: 457
Period size: 90 Copynumber: 3.0 Consensus size: 90
4626018 TAATCCCGAA
* * *
4626028 TATTTAATTTTAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAAT-TCTAATATGAT
1 TATTAAATTTCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAATCCCTAATATGAT
*
4626092 TAGGGTAACATGGATATAAAAGGAT
66 TAGGGTAACTTGGATATAAAAGGAT
4626117 TATTAAATTTCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAATCCCTAATATGAT
1 TATTAAATTTCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAATCCCTAATATGAT
4626182 TAGGGTAACTTGGATATAAAAGGAT
66 TAGGGTAACTTGGATATAAAAGGAT
*
4626207 TATTAAA-TTCAAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAAACCCTAATATGA
1 TATTAAATTTC-AATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAATCCCTAATATGA
*
4626271 TTAGGGTAACTTGGCTATAAAAGG
65 TTAGGGTAACTTGGATATAAAAGG
4626295 GTGTGTTAGG
Statistics
Matches: 170, Mismatches: 6, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
89 54 0.32
90 116 0.68
ACGTcount: A:0.46, C:0.05, G:0.11, T:0.38
Consensus pattern (90 bp):
TATTAAATTTCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAATCCCTAATATGAT
TAGGGTAACTTGGATATAAAAGGAT
Found at i:4627653 original size:13 final size:13
Alignment explanation
Indices: 4627635--4627663 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
4627625 ATATTAAATC
4627635 AAAACAAAGGAAA
1 AAAACAAAGGAAA
4627648 AAAACAAAGGAAA
1 AAAACAAAGGAAA
4627661 AAA
1 AAA
4627664 GGGGCAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.79, C:0.07, G:0.14, T:0.00
Consensus pattern (13 bp):
AAAACAAAGGAAA
Found at i:4629678 original size:26 final size:26
Alignment explanation
Indices: 4629642--4629691 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
4629632 CACGAAGGAG
*
4629642 TAATGTCATTTCCAAAGGAAAATTTA
1 TAATGTCATTTCCAAAGAAAAATTTA
4629668 TAATGTCATTTCCAAAGAAAAATT
1 TAATGTCATTTCCAAAGAAAAATT
4629692 ATCTCCAGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.44, C:0.12, G:0.10, T:0.34
Consensus pattern (26 bp):
TAATGTCATTTCCAAAGAAAAATTTA
Found at i:4630068 original size:220 final size:220
Alignment explanation
Indices: 4629687--4630821 Score: 1481
Period size: 220 Copynumber: 5.2 Consensus size: 220
4629677 TTCCAAAGAA
* * * *
4629687 AAATTATCTCCAGATTAACCCGATCTCCTC-ACGCGAAGAAGCAGTGTCATCCTCATACAATCAA
1 AAATTATCTCCAGATTGACCCGATCTCCTCAACGCGAAGGAGCAGTGTCATCCTCAGACAATCAG
* * * *
4629751 ACTTTCTCAACACGAAGGAACCATGTTGTCTCTAAATTATCTCTAGATTGACCCGACTTCCTCAA
66 ACTTCCTCAACACGAAGGAACCATGTTGTCTCCAAATTATCTCCAGATTGACCCGACTTCCTTAA
* * *
4629816 CGAGAAGGAACAACGTCATCTTCAACAAACAATTTATCTGACAGCGACTAGATCTCTTCAACACG
131 CGAGAAGGAACAACATCATCTTCAACAAACAATTTATCTGAAAGCGACCAGATCTCTTCAACACG
* **
4629881 GATAAAAAGAGTCGTCTTCAACACC
196 GATGAGCAGAGTCGTCTTCAACACC
* * * *
4629906 AAATTATCTCCAGATTGACCTGATCTCCTCAATGCAAAGGAGCAGTGTCATCCTCGGACAATCAG
1 AAATTATCTCCAGATTGACCCGATCTCCTCAACGCGAAGGAGCAGTGTCATCCTCAGACAATCAG
* * * * *
4629971 ACTTCCTCAACACGAAGGAATCATATTGTCTCTAAATTATCCCCAGATTGACTCGAC-TCCTTCA
66 ACTTCCTCAACACGAAGGAACCATGTTGTCTCCAAATTATCTCCAGATTGACCCGACTTCCTT-A
*
4630035 ACGAGAAGGAACAACATCATCTTTAACAAACAATTTATCTGAAAGCGACCAGATCTCTTCAACAC
130 ACGAGAAGGAACAACATCATCTTCAACAAACAATTTATCTGAAAGCGACCAGATCTCTTCAACAC
4630100 GGATGAGCAGAGTCGTCTTCAACACC
195 GGATGAGCAGAGTCGTCTTCAACACC
*
4630126 AAATTATCTCCAGATTGACCCGATCTCCTCAACGCGAAGGAGCAGTGTCATCATCAGACAATCAG
1 AAATTATCTCCAGATTGACCCGATCTCCTCAACGCGAAGGAGCAGTGTCATCCTCAGACAATCAG
* * * * *
4630191 ACTTCCTCAACACAAAGGAACCGTGTTGTCTCCAAATTATCTTCAGATTGACTCAACTTCCTTAA
66 ACTTCCTCAACACGAAGGAACCATGTTGTCTCCAAATTATCTCCAGATTGACCCGACTTCCTTAA
* ** * * * * *
4630256 TGAGAAGGAACAATGTCCTCTTCAACAAACAATTTATCTAAAACCGACTAGGTCTCTTCAACACG
131 CGAGAAGGAACAACATCATCTTCAACAAACAATTTATCTGAAAGCGACCAGATCTCTTCAACACG
* * *
4630321 GATGAGCAGAGTTGTTTTTAACACC
196 GATGAGCAGAGTCGTCTTCAACACC
* * * * * *
4630346 AAATTATCTCTAAATTGACCCGATCTACTCAACGCGAAGAACCAATGTCATCCTCAGACAATCAG
1 AAATTATCTCCAGATTGACCCGATCTCCTCAACGCGAAGGAGCAGTGTCATCCTCAGACAATCAG
* * * * * * * *
4630411 ATTTTCTCAACGCGAAGAAACCATGTTGTCTCGAAATTATCTCCAGATTGACCTGACTCCCTTAT
66 ACTTCCTCAACACGAAGGAACCATGTTGTCTCCAAATTATCTCCAGATTGACCCGACTTCCTTAA
* * *
4630476 CGAGAATGAACAACGA-CATCTTCAATAAACAATTTATCTGAAAGCGACCAAATCTCTTCAACAC
131 CGAGAAGGAACAAC-ATCATCTTCAACAAACAATTTATCTGAAAGCGACCAGATCTCTTCAACAC
* * *
4630540 GAATGAGCAGAGTCATCTTCAATACC
195 GGATGAGCAGAGTCGTCTTCAACACC
* * * * *
4630566 AAATTATCTCCAG--TCACCCGATCTCTTCAACGCGATGGAGCAGTGTTATCCTCAGAAAATCAG
1 AAATTATCTCCAGATTGACCCGATCTCCTCAACGCGAAGGAGCAGTGTCATCCTCAGACAATCAG
** * ** *
4630629 ACTTCCTCAACGTGAAGTAACTGTGTTGTCTCCAAATTATCTCCAGATTGACCCGACTTTCTTAA
66 ACTTCCTCAACACGAAGGAACCATGTTGTCTCCAAATTATCTCCAGATTGACCCGACTTCCTTAA
** *
4630694 CGAGAAGGAACTTCATCATCTTCAACAAACAATTTATCTGAAAGCGACCATATCTCTTCAACACG
131 CGAGAAGGAACAACATCATCTTCAACAAACAATTTATCTGAAAGCGACCAGATCTCTTCAACACG
* * * *
4630759 GATGAGCATAGTCTTTTTCATCA-C
196 GATGAGCAGAGTCGTCTTCAACACC
* *
4630783 AAATTATCTCCAGATTGACCCGATTTCCTCAACGAGAAG
1 AAATTATCTCCAGATTGACCCGATCTCCTCAACGCGAAG
4630822 AAATAATGTC
Statistics
Matches: 787, Mismatches: 122, Indels: 14
0.85 0.13 0.02
Matches are distributed among these distances:
217 15 0.02
218 170 0.22
219 51 0.06
220 546 0.69
221 5 0.01
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (220 bp):
AAATTATCTCCAGATTGACCCGATCTCCTCAACGCGAAGGAGCAGTGTCATCCTCAGACAATCAG
ACTTCCTCAACACGAAGGAACCATGTTGTCTCCAAATTATCTCCAGATTGACCCGACTTCCTTAA
CGAGAAGGAACAACATCATCTTCAACAAACAATTTATCTGAAAGCGACCAGATCTCTTCAACACG
GATGAGCAGAGTCGTCTTCAACACC
Found at i:4630875 original size:121 final size:122
Alignment explanation
Indices: 4630660--4630957 Score: 356
Period size: 121 Copynumber: 2.5 Consensus size: 122
4630650 TGTGTTGTCT
* * *
4630660 CCAAATTATCTCCAGATTGACCCGACTTT-CTTAACGAGAAGGAACT--TCATCATCTTCAACAA
1 CCAAATTATCTCCAGATTGACCCGA-TTTCCTCAACGAGAA-GAAATAAT-GTCATCTTCAACAA
* * * *
4630722 ACAATTTATCTGAAAGCGACCATATCTCTTCAACACGGATGAGCA-TAGTCTTTTTCATCA
63 ACAATTTATCTGAAAGCGACCAAATCTCTTCAACACGGATGAGCAGT-GTCGTCTTCAACA
4630782 -CAAATTATCTCCAGATTGACCCGATTTCCTCAACGAGAAGAAATAATGTCATCTTCAACAAACA
1 CCAAATTATCTCCAGATTGACCCGATTTCCTCAACGAGAAGAAATAATGTCATCTTCAACAAACA
* * *
4630846 ATTTATCTGAAAGCGGCCAAATCTCTTCAACATGGATGAGTAGTGTCGTCTTCAACA
66 ATTTATCTGAAAGCGACCAAATCTCTTCAACACGGATGAGCAGTGTCGTCTTCAACA
* * * ** * *
4630903 CCAAGTTATATCTAGATTGACCCGAAGTCCTCAAC-ATGAAGGAACAATGTCATCT
1 CCAAATTATCTCCAGATTGACCCGATTTCCTCAACGA-GAAGAAATAATGTCATCT
4630958 CTGAATCCTC
Statistics
Matches: 153, Mismatches: 17, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
120 7 0.05
121 99 0.65
122 47 0.31
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.28
Consensus pattern (122 bp):
CCAAATTATCTCCAGATTGACCCGATTTCCTCAACGAGAAGAAATAATGTCATCTTCAACAAACA
ATTTATCTGAAAGCGACCAAATCTCTTCAACACGGATGAGCAGTGTCGTCTTCAACA
Found at i:4632354 original size:114 final size:115
Alignment explanation
Indices: 4632201--4632496 Score: 488
Period size: 115 Copynumber: 2.6 Consensus size: 115
4632191 TTATTACTCA
*
4632201 ACCTTGTGGTGACCCGATCCGGGGTAAGATCCACATTATTATGGTTCGGACTCTGCTAACTACTA
1 ACCTTGTGGTGACCCGATCCGGGGTAAGATCCACATTATTATGGTTCGGACTCTGCTAACCACTA
4632266 ACTTATTTA-TTTA-TTTATTTTTATATATTTGTTTGCATTATTCAATTCG
66 ACTTATTTATTTTATTTTA-TTTTATATATTTGTTTGCATTATTCAATTCG
* * *
4632315 ACCTTGTTGTGACCCGATCCGGGGTAAGATCCACATTATTATGGTTCAGACTTTGCTAACCACTA
1 ACCTTGTGGTGACCCGATCCGGGGTAAGATCCACATTATTATGGTTCGGACTCTGCTAACCACTA
* *
4632380 ACTTTTTTATTTTATTTTATTTTATATATTTGTTTGCATTATTCGATTCG
66 ACTTATTTATTTTATTTTATTTTATATATTTGTTTGCATTATTCAATTCG
* * *
4632430 ACCTTGTGGTGACCCGATCCCGGGTAAGATCCACAATACTATGGTTCGGACTCTGCTAACCACTA
1 ACCTTGTGGTGACCCGATCCGGGGTAAGATCCACATTATTATGGTTCGGACTCTGCTAACCACTA
4632495 AC
66 AC
4632497 CGCTAACTTT
Statistics
Matches: 168, Mismatches: 12, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
114 69 0.41
115 95 0.57
116 4 0.02
ACGTcount: A:0.24, C:0.20, G:0.17, T:0.40
Consensus pattern (115 bp):
ACCTTGTGGTGACCCGATCCGGGGTAAGATCCACATTATTATGGTTCGGACTCTGCTAACCACTA
ACTTATTTATTTTATTTTATTTTATATATTTGTTTGCATTATTCAATTCG
Found at i:4632585 original size:35 final size:33
Alignment explanation
Indices: 4632512--4632610 Score: 110
Period size: 35 Copynumber: 2.9 Consensus size: 33
4632502 ACTTTTCTAA
* * *
4632512 CTTACTAACATTCTAAC-TTTTATTTTAATATT
1 CTTACTAACATACTAACTTTTTATTTTATTGTT
* *
4632544 CATACTAACATACTGACTTTTTTATTTTTATTGTT
1 CTTACTAACATACTAAC-TTTTTA-TTTTATTGTT
*
4632579 CTTACTAACTTACTAACATTTTTATTTTATTG
1 CTTACTAACATACTAAC-TTTTTATTTTATTG
4632611 CACAAACTAA
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
32 14 0.25
34 13 0.24
35 28 0.51
ACGTcount: A:0.28, C:0.15, G:0.03, T:0.54
Consensus pattern (33 bp):
CTTACTAACATACTAACTTTTTATTTTATTGTT
Found at i:4640021 original size:16 final size:16
Alignment explanation
Indices: 4640000--4640030 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
4639990 AAACTTATCC
*
4640000 ACCAAGTGTAAATATG
1 ACCAAGTGCAAATATG
4640016 ACCAAGTGCAAATAT
1 ACCAAGTGCAAATAT
4640031 AATGCTATGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.16, G:0.16, T:0.23
Consensus pattern (16 bp):
ACCAAGTGCAAATATG
Found at i:4642010 original size:5 final size:5
Alignment explanation
Indices: 4642000--4642030 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
4641990 GGAACTGGAA
*
4642000 AGGGG AGGGG AGGGG AGGGG AGAGG AGGGG A
1 AGGGG AGGGG AGGGG AGGGG AGGGG AGGGG A
4642031 AGTATTTACT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.26, C:0.00, G:0.74, T:0.00
Consensus pattern (5 bp):
AGGGG
Found at i:4643769 original size:16 final size:16
Alignment explanation
Indices: 4643750--4643790 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
4643740 AGGGGCCATG
4643750 GCCTAGATAGGCCTAA
1 GCCTAGATAGGCCTAA
* *
4643766 GCCTAGGTAGGCCTAG
1 GCCTAGATAGGCCTAA
4643782 GCCTAGATA
1 GCCTAGATA
4643791 CGCCCTGCTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.27, C:0.24, G:0.29, T:0.20
Consensus pattern (16 bp):
GCCTAGATAGGCCTAA
Found at i:4644030 original size:31 final size:31
Alignment explanation
Indices: 4643992--4644054 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
4643982 TTTATCGATT
4643992 TGTATCAAAATAATCACTTCACCGTCATCTC
1 TGTATCAAAATAATCACTTCACCGTCATCTC
4644023 TGTATCAAAATAATCACTTCACCGTCATCTC
1 TGTATCAAAATAATCACTTCACCGTCATCTC
4644054 T
1 T
4644055 ATTAAATTGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.32, C:0.29, G:0.06, T:0.33
Consensus pattern (31 bp):
TGTATCAAAATAATCACTTCACCGTCATCTC
Found at i:4647759 original size:34 final size:34
Alignment explanation
Indices: 4647721--4647801 Score: 144
Period size: 34 Copynumber: 2.4 Consensus size: 34
4647711 TCTGAATCCG
*
4647721 AAAATATTTTATATATAATTAATATAAAAAATAT
1 AAAATATTATATATATAATTAATATAAAAAATAT
*
4647755 AAAATATTATATATATAATTAATATAAAATATAT
1 AAAATATTATATATATAATTAATATAAAAAATAT
4647789 AAAATATTATATA
1 AAAATATTATATA
4647802 AATATATATA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
34 45 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (34 bp):
AAAATATTATATATATAATTAATATAAAAAATAT
Found at i:4647761 original size:25 final size:25
Alignment explanation
Indices: 4647733--4647787 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
4647723 AATATTTTAT
4647733 ATATAAT-TAATATAAAAAATATAAA
1 ATATAATAT-ATATAAAAAATATAAA
* **
4647758 ATATTATATATATAATTAATATAAA
1 ATATAATATATATAAAAAATATAAA
4647783 ATATA
1 ATATA
4647788 TAAAATATTA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
25 24 0.96
26 1 0.04
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (25 bp):
ATATAATATATATAAAAAATATAAA
Found at i:4647806 original size:18 final size:17
Alignment explanation
Indices: 4647749--4647820 Score: 58
Period size: 18 Copynumber: 4.1 Consensus size: 17
4647739 TTAATATAAA
4647749 AAATATAAAATATTATAT
1 AAATAT-AAATATTATAT
* * *
4647767 --ATATAATTAATATAA
1 AAATATAAATATTATAT
4647782 AATATATAAAATATTATAT
1 AA-ATAT-AAATATTATAT
*
4647801 AAATATATATATATATAT
1 AAATATAAATAT-TATAT
4647819 AA
1 AA
4647821 TCGGGGCGGG
Statistics
Matches: 42, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
15 8 0.19
16 4 0.10
17 5 0.12
18 15 0.36
19 10 0.24
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
AAATATAAATATTATAT
Found at i:4647819 original size:20 final size:21
Alignment explanation
Indices: 4647751--4647816 Score: 71
Period size: 22 Copynumber: 3.0 Consensus size: 21
4647741 AATATAAAAA
4647751 ATATAAAATATTATATATATAATT
1 ATAT-AAATA-TATATATAT-ATT
*
4647775 AATATAAA-ATATATAAAATATT
1 -ATATAAATATATAT-ATATATT
4647797 ATATAAATATATATATATAT
1 ATATAAATATATATATATAT
4647817 ATAATCGGGG
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
21 12 0.32
22 14 0.38
23 4 0.11
24 3 0.08
25 4 0.11
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (21 bp):
ATATAAATATATATATATATT
Found at i:4649814 original size:21 final size:21
Alignment explanation
Indices: 4649789--4649829 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
4649779 ATACTTGAAA
4649789 ATAAAAATAAAAATAAAAATT
1 ATAAAAATAAAAATAAAAATT
** *
4649810 ATAAATTTATAAATAAAAAT
1 ATAAAAATAAAAATAAAAAT
4649830 ATTTAATTTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (21 bp):
ATAAAAATAAAAATAAAAATT
Found at i:4649837 original size:21 final size:21
Alignment explanation
Indices: 4649799--4649844 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
4649789 ATAAAAATAA
4649799 AAATAAAAATTATAAATTTAT
1 AAATAAAAATTATAAATTTAT
*
4649820 AAATAAAAA-TATTTAATTTAT
1 AAATAAAAATTA-TAAATTTAT
4649841 AAAT
1 AAAT
4649845 GTTTTTAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 2 0.09
21 21 0.91
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (21 bp):
AAATAAAAATTATAAATTTAT
Found at i:4649851 original size:17 final size:17
Alignment explanation
Indices: 4649831--4649864 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
4649821 AATAAAAATA
4649831 TTTAATTTATAAATGTT
1 TTTAATTTATAAATGTT
4649848 TTTAATTTATAAATGTT
1 TTTAATTTATAAATGTT
4649865 GTATACACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.59
Consensus pattern (17 bp):
TTTAATTTATAAATGTT
Found at i:4649965 original size:17 final size:18
Alignment explanation
Indices: 4649930--4649973 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 18
4649920 GTTTTAATGT
* **
4649930 TTTATAAATGTTTTTTAA
1 TTTATAATTGTTTAATAA
4649948 -TTATAATTGTTTAATAA
1 TTTATAATTGTTTAATAA
4649965 TTTATAATT
1 TTTATAATT
4649974 TTATTTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 14 0.64
18 8 0.36
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (18 bp):
TTTATAATTGTTTAATAA
Found at i:4650021 original size:26 final size:27
Alignment explanation
Indices: 4649957--4650021 Score: 64
Period size: 28 Copynumber: 2.4 Consensus size: 27
4649947 ATTATAATTG
*
4649957 TTTAATAATTTATAATTTTATTTATTT
1 TTTAATAATTTATAATGTTATTTATTT
*
4649984 TTGTAA-ATATTTAATAGTGTT-TTTA-TT
1 TT-TAATA-ATTT-ATAATGTTATTTATTT
4650011 TTTAATAATTT
1 TTTAATAATTT
4650022 TAAATACTTC
Statistics
Matches: 32, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
26 7 0.22
27 8 0.25
28 11 0.34
29 6 0.19
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.63
Consensus pattern (27 bp):
TTTAATAATTTATAATGTTATTTATTT
Found at i:4657376 original size:28 final size:33
Alignment explanation
Indices: 4657309--4657376 Score: 76
Period size: 28 Copynumber: 2.2 Consensus size: 33
4657299 TAAAAATTAT
4657309 ATTTAAACTTACATTTAAAATTAGATTTATACAA
1 ATTTAAACTTACATTT-AAATTAGATTTATACAA
*
4657343 A-CTAAA-TTA-ATTT-AATTA-ATTTATA-AA
1 ATTTAAACTTACATTTAAATTAGATTTATACAA
4657370 ATTTAAA
1 ATTTAAA
4657377 AAGATTAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
27 3 0.10
28 11 0.35
29 5 0.16
31 4 0.13
32 3 0.10
33 4 0.13
34 1 0.03
ACGTcount: A:0.50, C:0.06, G:0.01, T:0.43
Consensus pattern (33 bp):
ATTTAAACTTACATTTAAATTAGATTTATACAA
Found at i:4659829 original size:255 final size:255
Alignment explanation
Indices: 4659378--4659874 Score: 922
Period size: 255 Copynumber: 1.9 Consensus size: 255
4659368 TCATATGAAC
* *
4659378 ATATATACTTTATGCATGTATCATAATAATTATCATGTATGCATATTCATAACTATTGTGCTGTG
1 ATATATACTTTATGCATGTATCATAATAATTATCATGTATGCATATTCATAACTACTGTGCTATG
4659443 AAAATCAACATAGGAGTTAGACTTATCACAAGTCTTATTCCATTGTACCATACTTCTAATATGTA
66 AAAATCAACATAGGAGTTAGACTTATCACAAGTCTTATTCCATTGTACCATACTTCTAATATGTA
* *
4659508 CTCACCTTAGCCTTGCTTTGACTCGATTCTAATCCTTCAATTATTCCGGAACGAGATCACGTTCT
131 CTCACCTTAGCCTTGCTTTGACTCAATTCTAATCCTTCAATTATTCCAGAACGAGATCACGTTCT
*
4659573 AAATCTACATATTAATACATTGATACATATCAGTATACTAATTGATACATATCAGTATAT
196 AAATCTACATATTAATACATTGATACATATCAATATACTAATTGATACATATCAGTATAT
*
4659633 ATATATACTTTATGCATGTATCATAATAATTATCATGTATGCATGTTCATAACTACTGTGCTATG
1 ATATATACTTTATGCATGTATCATAATAATTATCATGTATGCATATTCATAACTACTGTGCTATG
4659698 AAAATCAACATAGGAGTTAGACTTATCACAAGTCTTATTCCATTGTACCATACTTCTAATATGTA
66 AAAATCAACATAGGAGTTAGACTTATCACAAGTCTTATTCCATTGTACCATACTTCTAATATGTA
* *
4659763 CTCACCTTAGCCTTGCTTTGACTCAATTCTAATCCTTCAATTGTTCTAGAACGAGATCACGTTCT
131 CTCACCTTAGCCTTGCTTTGACTCAATTCTAATCCTTCAATTATTCCAGAACGAGATCACGTTCT
4659828 AAATCTACATATTAATACATTGATACATATCAATATACTAATTGATA
196 AAATCTACATATTAATACATTGATACATATCAATATACTAATTGATA
4659875 TATTCTAAAC
Statistics
Matches: 234, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
255 234 1.00
ACGTcount: A:0.34, C:0.19, G:0.11, T:0.37
Consensus pattern (255 bp):
ATATATACTTTATGCATGTATCATAATAATTATCATGTATGCATATTCATAACTACTGTGCTATG
AAAATCAACATAGGAGTTAGACTTATCACAAGTCTTATTCCATTGTACCATACTTCTAATATGTA
CTCACCTTAGCCTTGCTTTGACTCAATTCTAATCCTTCAATTATTCCAGAACGAGATCACGTTCT
AAATCTACATATTAATACATTGATACATATCAATATACTAATTGATACATATCAGTATAT
Found at i:4661741 original size:21 final size:21
Alignment explanation
Indices: 4661690--4661742 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
4661680 ATTATGACTA
4661690 TCGCAATGCGATTTTCCAATT
1 TCGCAATGCGATTTTCCAATT
**
4661711 TCGCGTTGCGATTTTCCCAA-T
1 TCGCAATGCGATTTT-CCAATT
4661732 TCGCAATGCGA
1 TCGCAATGCGA
4661743 ATAAGTAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 23 0.85
22 4 0.15
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (21 bp):
TCGCAATGCGATTTTCCAATT
Found at i:4661775 original size:21 final size:21
Alignment explanation
Indices: 4661732--4661846 Score: 187
Period size: 21 Copynumber: 5.5 Consensus size: 21
4661722 TTTTCCCAAT
** *
4661732 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTTGGAAAA
4661752 TCGCAATGCGAATTTGGAAAA
1 TCGCAATGCGAATTTGGAAAA
4661773 TCGCAATGCGAATTTGGAAAA
1 TCGCAATGCGAATTTGGAAAA
4661794 TCGCAATGCGAATTTGGAAAA
1 TCGCAATGCGAATTTGGAAAA
4661815 TCGCAATGCGAATTTGGAAAA
1 TCGCAATGCGAATTTGGAAAA
*
4661836 TCGCAACGCGA
1 TCGCAATGCGA
4661847 TACTGACTAT
Statistics
Matches: 90, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
20 12 0.13
21 78 0.87
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.22
Consensus pattern (21 bp):
TCGCAATGCGAATTTGGAAAA
Found at i:4661860 original size:20 final size:20
Alignment explanation
Indices: 4661835--4661949 Score: 97
Period size: 20 Copynumber: 5.7 Consensus size: 20
4661825 AATTTGGAAA
4661835 ATCGCAACGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* * *
4661855 ATCGCAACACGATAAT-ACAAA
1 ATCGCAACGCGATACTGAC--T
4661876 ATCGCAACGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* * * *
4661896 TTCGCAACTCGATACTTAAT
1 ATCGCAACGCGATACTGACT
* * *
4661916 TTCGCAACTCAATACTGACT
1 ATCGCAACGCGATACTGACT
* *
4661936 TTCGCAACGAGATA
1 ATCGCAACGCGATA
4661950 ATACATAATC
Statistics
Matches: 76, Mismatches: 16, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
19 2 0.03
20 58 0.76
21 14 0.18
22 2 0.03
ACGTcount: A:0.35, C:0.27, G:0.15, T:0.23
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:4661877 original size:41 final size:41
Alignment explanation
Indices: 4661832--4661969 Score: 163
Period size: 41 Copynumber: 3.4 Consensus size: 41
4661822 GCGAATTTGG
*
4661832 AAAATCGCAACGCGATACTGACTATCGCAACACGATAATAC
1 AAAATCGCAACGCGATACTGACTTTCGCAACACGATAATAC
* * *
4661873 AAAATCGCAACGCGATACTGACTTTCGCAACTCGATACT-T
1 AAAATCGCAACGCGATACTGACTTTCGCAACACGATAATAC
** * *
4661913 AATTTCGCAACTCAATACTGACTTTCGCAACGA-GATAATAC
1 AAAATCGCAACGCGATACTGACTTTCGCAAC-ACGATAATAC
* *
4661954 ATAATCGCAATGCGAT
1 AAAATCGCAACGCGAT
4661970 TTTCAAAGTG
Statistics
Matches: 78, Mismatches: 17, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
40 32 0.41
41 46 0.59
ACGTcount: A:0.37, C:0.25, G:0.14, T:0.23
Consensus pattern (41 bp):
AAAATCGCAACGCGATACTGACTTTCGCAACACGATAATAC
Found at i:4662166 original size:22 final size:22
Alignment explanation
Indices: 4662136--4662179 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
4662126 CACTCTCTCA
4662136 CCCAACTCCGACGAAATCCGTC
1 CCCAACTCCGACGAAATCCGTC
* *
4662158 CCCATCTCCGGCGAAATCCGTC
1 CCCAACTCCGACGAAATCCGTC
4662180 TATCTCCATC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.23, C:0.45, G:0.16, T:0.16
Consensus pattern (22 bp):
CCCAACTCCGACGAAATCCGTC
Found at i:4662481 original size:20 final size:20
Alignment explanation
Indices: 4662442--4662500 Score: 57
Period size: 20 Copynumber: 3.0 Consensus size: 20
4662432 TTTATTCTCT
* **
4662442 CGTTGCGATAGTCAAATTCG
1 CGTTGCGATTGTCATTTTCG
4662462 CGTTGCGATTGTCATTTTCG
1 CGTTGCGATTGTCATTTTCG
* *
4662482 TGTTGC-AGTTTTCATTTTC
1 CGTTGCGA-TTGTCATTTTC
4662501 AGAAACTATT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
19 1 0.03
20 32 0.97
ACGTcount: A:0.15, C:0.19, G:0.22, T:0.44
Consensus pattern (20 bp):
CGTTGCGATTGTCATTTTCG
Found at i:4662691 original size:25 final size:24
Alignment explanation
Indices: 4662637--4662691 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 24
4662627 TGTTTATTAT
* *
4662637 TGTTTTTGGTATATCTTCACAGTG
1 TGTTTTTGGTATATCTTAACAGTA
4662661 TAGTTTTTGGTATATC-TAACTTAGTA
1 T-GTTTTTGGTATATCTTAAC--AGTA
4662687 TGTTT
1 TGTTT
4662692 ATTGTTTTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
24 4 0.15
25 18 0.69
26 4 0.15
ACGTcount: A:0.20, C:0.09, G:0.18, T:0.53
Consensus pattern (24 bp):
TGTTTTTGGTATATCTTAACAGTA
Found at i:4663837 original size:18 final size:18
Alignment explanation
Indices: 4663816--4663863 Score: 78
Period size: 18 Copynumber: 2.7 Consensus size: 18
4663806 TCCACTTCGG
4663816 GAGCCATCACCTCACCCA
1 GAGCCATCACCTCACCCA
*
4663834 GAGCTATCACCTCACCCA
1 GAGCCATCACCTCACCCA
*
4663852 GAGCCATTACCT
1 GAGCCATCACCT
4663864 GATCGACCCG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.27, C:0.44, G:0.12, T:0.17
Consensus pattern (18 bp):
GAGCCATCACCTCACCCA
Found at i:4664544 original size:152 final size:153
Alignment explanation
Indices: 4664267--4664573 Score: 607
Period size: 152 Copynumber: 2.0 Consensus size: 153
4664257 AGATTGCTTA
4664267 ATAAATTCATTCGGTTGCTGCCAATACTGCTAAACTATTTTTGTTAGTATTTGTTTTTGGTTTTG
1 ATAAATTCATTCGGTTGCTGCCAATACTGCTAAACTATTTTTGTTAGTATTTGTTTTTGGTTTTG
4664332 TTTTTGTCTTTTGGTTGAAGTAATGCAATCCATTCAAGTTTCAATTTACAGAAAAAGAATAGTTT
66 TTTTTGTCTTTTGGTTGAAGTAATGCAATCCATTCAAGTTTCAATTTACAGAAAAAGAATAGTTT
4664397 ACTTTTGTAACACGAAAATGGCT
131 ACTTTTGTAACACGAAAATGGCT
4664420 ATAAATTCATTCGGTTGCTGCCAATACTGCTAAACTATTTTTGTTAGTATTTGTTTTTGG-TTTG
1 ATAAATTCATTCGGTTGCTGCCAATACTGCTAAACTATTTTTGTTAGTATTTGTTTTTGGTTTTG
4664484 TTTTTGTCTTTTGGTTGAAGTAATGCAATCCATTCAAGTTTCAATTTACAGAAAAAGAATAGTTT
66 TTTTTGTCTTTTGGTTGAAGTAATGCAATCCATTCAAGTTTCAATTTACAGAAAAAGAATAGTTT
4664549 ACTTTTGTAACACGAAAATGGCT
131 ACTTTTGTAACACGAAAATGGCT
4664572 AT
1 AT
4664574 TGCAACGCGG
Statistics
Matches: 154, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
152 94 0.61
153 60 0.39
ACGTcount: A:0.28, C:0.12, G:0.16, T:0.43
Consensus pattern (153 bp):
ATAAATTCATTCGGTTGCTGCCAATACTGCTAAACTATTTTTGTTAGTATTTGTTTTTGGTTTTG
TTTTTGTCTTTTGGTTGAAGTAATGCAATCCATTCAAGTTTCAATTTACAGAAAAAGAATAGTTT
ACTTTTGTAACACGAAAATGGCT
Found at i:4664646 original size:19 final size:19
Alignment explanation
Indices: 4664622--4664674 Score: 88
Period size: 19 Copynumber: 2.8 Consensus size: 19
4664612 TTGCAACGAC
4664622 AAAATCGCAATGCGAAATG
1 AAAATCGCAATGCGAAATG
*
4664641 AAAATCGCAACGCGAAATG
1 AAAATCGCAATGCGAAATG
*
4664660 AAAATCGTAATGCGA
1 AAAATCGCAATGCGA
4664675 TTTGTGTTTC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.47, C:0.17, G:0.21, T:0.15
Consensus pattern (19 bp):
AAAATCGCAATGCGAAATG
Found at i:4664692 original size:19 final size:19
Alignment explanation
Indices: 4664681--4664746 Score: 79
Period size: 19 Copynumber: 3.7 Consensus size: 19
4664671 GCGATTTGTG
*
4664681 TTTCGCGTTGCGATTTTCA
1 TTTCGCATTGCGATTTTCA
4664700 TTTCGCATTGCGA-TTT--
1 TTTCGCATTGCGATTTTCA
*
4664716 TGTCG--TTGCGATTTTCA
1 TTTCGCATTGCGATTTTCA
4664733 TTTCGCATTGCGAT
1 TTTCGCATTGCGAT
4664747 AGCCATTTCC
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
14 6 0.15
15 3 0.08
16 4 0.10
17 4 0.10
18 3 0.08
19 19 0.49
ACGTcount: A:0.12, C:0.20, G:0.21, T:0.47
Consensus pattern (19 bp):
TTTCGCATTGCGATTTTCA
Found at i:4664765 original size:20 final size:19
Alignment explanation
Indices: 4664731--4664785 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
4664721 TTGCGATTTT
*
4664731 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
4664750 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
*
4664770 CATTTTCACGTTGCGA
1 CA-TTTCGCGTTGCGA
4664786 AAGTAAGTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.16
20 23 0.74
21 3 0.10
ACGTcount: A:0.18, C:0.25, G:0.22, T:0.35
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:4665194 original size:21 final size:20
Alignment explanation
Indices: 4665142--4665202 Score: 68
Period size: 21 Copynumber: 3.0 Consensus size: 20
4665132 GACTCACCTG
4665142 TCATCCCTCAAGAGTCCCCT
1 TCATCCCTCAAGAGTCCCCT
* ** *
4665162 CCAATCGTTCAAGAGGCCCCT
1 TC-ATCCCTCAAGAGTCCCCT
4665183 ATCATCCCTCAAGAGTCCCC
1 -TCATCCCTCAAGAGTCCCC
4665203 CCCGTTCAAG
Statistics
Matches: 31, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
20 1 0.03
21 29 0.94
22 1 0.03
ACGTcount: A:0.23, C:0.43, G:0.13, T:0.21
Consensus pattern (20 bp):
TCATCCCTCAAGAGTCCCCT
Found at i:4665201 original size:42 final size:38
Alignment explanation
Indices: 4665142--4665226 Score: 116
Period size: 38 Copynumber: 2.1 Consensus size: 38
4665132 GACTCACCTG
*
4665142 TCATCCCTCAAGAGTCCCCTCCAATCGTTCAAGAGGCCCCTA
1 TCATCCCTCAAGAGTCCCC-CC---CGTTCAAGAGGCCACTA
*
4665184 TCATCCCTCAAGAGTCCCCCCCGTTCAAGAGGCCACTG
1 TCATCCCTCAAGAGTCCCCCCCGTTCAAGAGGCCACTA
4665222 TCATC
1 TCATC
4665227 GTTGAAGAGG
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
38 20 0.49
41 2 0.05
42 19 0.46
ACGTcount: A:0.22, C:0.41, G:0.15, T:0.21
Consensus pattern (38 bp):
TCATCCCTCAAGAGTCCCCCCCGTTCAAGAGGCCACTA
Found at i:4665226 original size:38 final size:40
Alignment explanation
Indices: 4665139--4665226 Score: 126
Period size: 42 Copynumber: 2.2 Consensus size: 40
4665129 CCCGACTCAC
*
4665139 CTGTCATCCCTCAAGAGTCCCCTCCAATCGTTCAAGAGGCCC
1 CTGTCATCCCTCAAGAGTCCCCTCC-A-CGTTCAAGAGGCCA
*
4665181 CTATCATCCCTCAAGAGTCCCC-CC-CGTTCAAGAGGCCA
1 CTGTCATCCCTCAAGAGTCCCCTCCACGTTCAAGAGGCCA
4665219 CTGTCATC
1 CTGTCATC
4665227 GTTGAAGAGG
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
38 20 0.47
41 2 0.05
42 21 0.49
ACGTcount: A:0.22, C:0.41, G:0.16, T:0.22
Consensus pattern (40 bp):
CTGTCATCCCTCAAGAGTCCCCTCCACGTTCAAGAGGCCA
Found at i:4665235 original size:38 final size:39
Alignment explanation
Indices: 4665142--4665240 Score: 103
Period size: 38 Copynumber: 2.5 Consensus size: 39
4665132 GACTCACCTG
*
4665142 TCATCCCTCAAGA-GTCCCCTCCAATCGTTCAAGAGGCCCCTA
1 TCATCCCTCAAGAGGTCCCC-CC---CGTTCAAGAGGCCACTA
*
4665184 TCATCCCTCAAGA-GTCCCCCCCGTTCAAGAGGCCACTG
1 TCATCCCTCAAGAGGTCCCCCCCGTTCAAGAGGCCACTA
** *
4665222 TCATCGTTGAAGAGGTCCC
1 TCATCCCTCAAGAGGTCCC
4665241 TCCCACCATT
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
38 25 0.49
39 5 0.10
41 2 0.04
42 19 0.37
ACGTcount: A:0.22, C:0.38, G:0.18, T:0.21
Consensus pattern (39 bp):
TCATCCCTCAAGAGGTCCCCCCCGTTCAAGAGGCCACTA
Found at i:4666750 original size:20 final size:20
Alignment explanation
Indices: 4666713--4666752 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
4666703 AGGCAAAACA
*
4666713 GACTATCGCAACACGAAAAT
1 GACTATCGCAACAAGAAAAT
4666733 GACTATCGCAA-AGAGAAAAT
1 GACTATCGCAACA-AGAAAAT
4666753 CGCAATGCGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.47, C:0.20, G:0.17, T:0.15
Consensus pattern (20 bp):
GACTATCGCAACAAGAAAAT
Found at i:4666771 original size:19 final size:17
Alignment explanation
Indices: 4666746--4666795 Score: 61
Period size: 14 Copynumber: 3.0 Consensus size: 17
4666736 TATCGCAAAG
4666746 AGAAAATCGCAATGCGAA
1 AGAAAATCGCAATGCG-A
4666764 ATGAAAATCGCAA--CG-
1 A-GAAAATCGCAATGCGA
4666779 AGAAAATCGCAATGCGA
1 AGAAAATCGCAATGCGA
4666796 TTTTCATTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
14 11 0.39
15 1 0.04
16 2 0.07
17 2 0.07
18 1 0.04
19 11 0.39
ACGTcount: A:0.48, C:0.18, G:0.22, T:0.12
Consensus pattern (17 bp):
AGAAAATCGCAATGCGA
Found at i:4666813 original size:19 final size:19
Alignment explanation
Indices: 4666785--4666868 Score: 70
Period size: 19 Copynumber: 4.6 Consensus size: 19
4666775 AACGAGAAAA
*
4666785 TCGCAATGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
4666804 TCGCATTGCGATTTTC---
1 TCGCATTGCGATTTTCATT
* ***
4666820 TAG--TTGCGATAGCCATTT
1 TCGCATTGCGATTTTCA-TT
*
4666838 TCGCGTTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
4666857 TCGCATTGCGAT
1 TCGCATTGCGAT
4666869 AGCTATTTTC
Statistics
Matches: 49, Mismatches: 10, Indels: 12
0.69 0.14 0.17
Matches are distributed among these distances:
14 8 0.16
16 2 0.04
18 2 0.04
19 28 0.57
20 9 0.18
ACGTcount: A:0.17, C:0.21, G:0.20, T:0.42
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:4666839 original size:20 final size:20
Alignment explanation
Indices: 4666822--4666908 Score: 122
Period size: 20 Copynumber: 4.4 Consensus size: 20
4666812 CGATTTTCTA
4666822 GTTGCGATAGCCATTTTCGC
1 GTTGCGATAGCCATTTTCGC
***
4666842 GTTGCGATTTTCA-TTTCGC
1 GTTGCGATAGCCATTTTCGC
* *
4666861 ATTGCGATAGCTATTTTCGC
1 GTTGCGATAGCCATTTTCGC
4666881 GTTGCGATAGCCATTTTCGC
1 GTTGCGATAGCCATTTTCGC
4666901 GTTGCGAT
1 GTTGCGAT
4666909 TTCCCCGTTG
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
19 14 0.25
20 42 0.75
ACGTcount: A:0.15, C:0.22, G:0.24, T:0.39
Consensus pattern (20 bp):
GTTGCGATAGCCATTTTCGC
Found at i:4666896 original size:39 final size:40
Alignment explanation
Indices: 4666823--4666908 Score: 120
Period size: 39 Copynumber: 2.2 Consensus size: 40
4666813 GATTTTCTAG
***
4666823 TTGCGATAGCCATTTTCGCGTTGCGATTTTCA-TTTCGCA
1 TTGCGATAGCCATTTTCGCGTTGCGATAGCCATTTTCGCA
* *
4666862 TTGCGATAGCTATTTTCGCGTTGCGATAGCCATTTTCGCG
1 TTGCGATAGCCATTTTCGCGTTGCGATAGCCATTTTCGCA
4666902 TTGCGAT
1 TTGCGAT
4666909 TTCCCCGTTG
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
39 28 0.68
40 13 0.32
ACGTcount: A:0.15, C:0.22, G:0.23, T:0.40
Consensus pattern (40 bp):
TTGCGATAGCCATTTTCGCGTTGCGATAGCCATTTTCGCA
Found at i:4666906 original size:59 final size:53
Alignment explanation
Indices: 4666791--4666910 Score: 168
Period size: 59 Copynumber: 2.2 Consensus size: 53
4666781 AAAATCGCAA
*
4666791 TGCGATTTTCATTTCGCATTGCGATTTTCTAGTTGCGATAGCCATTTTCGCGT
1 TGCGATTTTCATTTCGCATTGCGATTTTCGAGTTGCGATAGCCATTTTCGCGT
*
4666844 TGCGATTTTCATTTCGCATTGCGATAGCTATTTTCGCGTTGCGATAGCCATTTTCGCGT
1 TGCGATTTTCATTTCGCATTGC----G--ATTTTCGAGTTGCGATAGCCATTTTCGCGT
4666903 TGCGATTT
1 TGCGATTT
4666911 CCCCGTTGCG
Statistics
Matches: 59, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
53 22 0.37
57 1 0.02
59 36 0.61
ACGTcount: A:0.15, C:0.21, G:0.22, T:0.42
Consensus pattern (53 bp):
TGCGATTTTCATTTCGCATTGCGATTTTCGAGTTGCGATAGCCATTTTCGCGT
Found at i:4667148 original size:20 final size:20
Alignment explanation
Indices: 4667123--4667172 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
4667113 TTGAAGATGA
4667123 TTGCGATTTTCAGAATCTCG
1 TTGCGATTTTCAGAATCTCG
***
4667143 TTGCGAAAGTCAGAATCTCG
1 TTGCGATTTTCAGAATCTCG
4667163 TTGCGATTTT
1 TTGCGATTTT
4667173 GTATTATCTC
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.22, C:0.18, G:0.22, T:0.38
Consensus pattern (20 bp):
TTGCGATTTTCAGAATCTCG
Found at i:4667200 original size:20 final size:20
Alignment explanation
Indices: 4667137--4667200 Score: 67
Period size: 20 Copynumber: 3.1 Consensus size: 20
4667127 GATTTTCAGA
* **
4667137 ATCTCGTTGCGAAAGTCAGA
1 ATCTCGTTGCGATAGTCATT
*
4667157 ATCTCGTTGCGATTTTGT-ATT
1 ATCTCGTTGCGA--TAGTCATT
4667178 ATCTCGTTGCGATAGTCATT
1 ATCTCGTTGCGATAGTCATT
4667198 ATC
1 ATC
4667201 GCATTGCGAA
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
19 3 0.08
20 18 0.50
21 13 0.36
22 2 0.06
ACGTcount: A:0.22, C:0.19, G:0.20, T:0.39
Consensus pattern (20 bp):
ATCTCGTTGCGATAGTCATT
Found at i:4668269 original size:12 final size:12
Alignment explanation
Indices: 4668252--4668285 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
4668242 TATAATCCTA
4668252 AAGAAGAAAAAG
1 AAGAAGAAAAAG
4668264 AAGAAGAAAAAG
1 AAGAAGAAAAAG
4668276 AAGAAGAAAA
1 AAGAAGAAAA
4668286 GTCCCCGAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (12 bp):
AAGAAGAAAAAG
Found at i:4670584 original size:19 final size:19
Alignment explanation
Indices: 4670562--4670692 Score: 94
Period size: 19 Copynumber: 7.7 Consensus size: 19
4670552 GGAAATTACT
4670562 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
4670581 ATCGCAA--CG--A-GATA
1 ATCGCAATGCGAAATGAAA
*
4670595 ATCGCAATGCAAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
4670614 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
4670628 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
**
4670647 ATCGCAAT--G--A-GGGA
1 ATCGCAATGCGAAATGAAA
*
4670661 ATCGCAAAGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
4670680 ATCGCAACGCGAA
1 ATCGCAATGCGAA
4670693 TTTAGTTTCG
Statistics
Matches: 85, Mismatches: 12, Indels: 30
0.67 0.09 0.24
Matches are distributed among these distances:
14 29 0.34
15 3 0.04
16 4 0.05
17 4 0.05
18 3 0.04
19 42 0.49
ACGTcount: A:0.46, C:0.18, G:0.23, T:0.13
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:4670604 original size:33 final size:33
Alignment explanation
Indices: 4670562--4670688 Score: 209
Period size: 33 Copynumber: 3.8 Consensus size: 33
4670552 GGAAATTACT
*
4670562 ATCGCAATGCGAAATGAAAATCGCAACGAGATA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
*
4670595 ATCGCAATGCAAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
* *
4670628 ATCGCAATGCGAAATGAAAATCGCAATGAGGGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
*
4670661 ATCGCAAAGCGAAATGAAAATCGCAACG
1 ATCGCAATGCGAAATGAAAATCGCAACG
4670689 CGAATTTAGT
Statistics
Matches: 87, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 87 1.00
ACGTcount: A:0.46, C:0.18, G:0.23, T:0.13
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:4670735 original size:33 final size:33
Alignment explanation
Indices: 4670698--4670806 Score: 164
Period size: 33 Copynumber: 3.3 Consensus size: 33
4670688 GCGAATTTAG
* * * *
4670698 TTTCGCGTTGCGATTTTGTCGTTGCAATTTTCA
1 TTTCGCATTGCGATTATATCGTTGCGATTTTCA
* *
4670731 TTTCGCATTGCGATTCTCTCGTTGCGATTTTCA
1 TTTCGCATTGCGATTATATCGTTGCGATTTTCA
4670764 TTTCGCATTGCGATTATATCGTTGCGATTTTCA
1 TTTCGCATTGCGATTATATCGTTGCGATTTTCA
4670797 TTTCGCATTG
1 TTTCGCATTG
4670807 TGATAGTAAT
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 70 1.00
ACGTcount: A:0.14, C:0.20, G:0.19, T:0.47
Consensus pattern (33 bp):
TTTCGCATTGCGATTATATCGTTGCGATTTTCA
Found at i:4670936 original size:14 final size:14
Alignment explanation
Indices: 4670917--4670953 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
4670907 CATCAATTAA
4670917 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
4670931 ACAAATCACCTTTT
1 ACAAATCAACTTTT
4670945 ACAAATCAA
1 ACAAATCAA
4670954 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.24, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:4672371 original size:21 final size:21
Alignment explanation
Indices: 4672305--4672371 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
4672295 GTGAATCGGG
*
4672305 CTCTTGAATGGTGGGA-GGGA
1 CTCTTGAACGGTGGGAGGGGA
* * ** * *
4672325 CCTCTTCAACGATGATAGTGGC
1 -CTCTTGAACGGTGGGAGGGGA
4672347 CTCTTGAACGGTGGGAGGGGA
1 CTCTTGAACGGTGGGAGGGGA
4672368 CTCT
1 CTCT
4672372 CGAGGAATGA
Statistics
Matches: 32, Mismatches: 13, Indels: 2
0.68 0.28 0.04
Matches are distributed among these distances:
21 30 0.94
22 2 0.06
ACGTcount: A:0.19, C:0.19, G:0.36, T:0.25
Consensus pattern (21 bp):
CTCTTGAACGGTGGGAGGGGA
Found at i:4672382 original size:42 final size:42
Alignment explanation
Indices: 4672305--4672393 Score: 110
Period size: 42 Copynumber: 2.1 Consensus size: 42
4672295 GTGAATCGGG
* *
4672305 CTCTTGAATGGTGGGAGGGACCTCTTCAACGATGATAGTGGC
1 CTCTTGAACGGTGGGAGGGACCTCTTCAACGATGATAGGGGC
* *
4672347 CTCTTGAACGGTGGGAGGGGA-CTC-TCGAGGAATGATAGGGGC
1 CTCTTGAACGGTGGGA-GGGACCTCTTCAACG-ATGATAGGGGC
4672389 CTCTT
1 CTCTT
4672394 CAACAATAGG
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
41 4 0.10
42 33 0.80
43 4 0.10
ACGTcount: A:0.20, C:0.19, G:0.36, T:0.25
Consensus pattern (42 bp):
CTCTTGAACGGTGGGAGGGACCTCTTCAACGATGATAGGGGC
Found at i:4672411 original size:42 final size:42
Alignment explanation
Indices: 4672336--4672423 Score: 104
Period size: 42 Copynumber: 2.1 Consensus size: 42
4672326 CTCTTCAACG
* * ** *
4672336 ATGATAGTGGCCTCTTGAACGGTGGGAGGGGACTCTCGAGGA
1 ATGATAGGGGCCTCTTCAACAATAGGAGGGGACTCTCGAGGA
* * *
4672378 ATGATAGGGGCCTCTTCAACAATAGGAGTGGACTCTTGAGGG
1 ATGATAGGGGCCTCTTCAACAATAGGAGGGGACTCTCGAGGA
4672420 ATGA
1 ATGA
4672424 CATGCGAGTC
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.25, C:0.16, G:0.36, T:0.23
Consensus pattern (42 bp):
ATGATAGGGGCCTCTTCAACAATAGGAGGGGACTCTCGAGGA
Found at i:4672820 original size:91 final size:91
Alignment explanation
Indices: 4672645--4672829 Score: 302
Period size: 91 Copynumber: 2.0 Consensus size: 91
4672635 ATTTCAAACT
4672645 TTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATGCACAGTTTAGC
1 TTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAA--CACAGTTTAGC
4672710 AGAATTGGCAGCAACCGAATAAATTTAC
64 AGAATTGGCAGCAACCGAATAAATTTAC
*
4672738 TTCAACCAAAAGACAAAACAAAAAGACAAATACTAACTTCACAGTGTT-AATAA-ACAGTTTAGC
1 TTCAACCAAAAGACAAAAC--AAAGACAAATACTAACTTCACAGTGTTAAAGAACACAGTTTAGC
*
4672801 AGTATTGGCAGCAACCGAATAAATTTAC
64 AGAATTGGCAGCAACCGAATAAATTTAC
4672829 T
1 T
4672830 AAGCAATCTA
Statistics
Matches: 88, Mismatches: 2, Indels: 6
0.92 0.02 0.06
Matches are distributed among these distances:
91 38 0.43
93 19 0.22
94 4 0.05
95 27 0.31
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.22
Consensus pattern (91 bp):
TTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAACACAGTTTAGCAG
AATTGGCAGCAACCGAATAAATTTAC
Found at i:4674539 original size:20 final size:19
Alignment explanation
Indices: 4674494--4674554 Score: 68
Period size: 20 Copynumber: 3.1 Consensus size: 19
4674484 GTCTTTGGTT
*
4674494 GAAATGAAAACCGCAACGA
1 GAAATGAAAATCGCAACGA
*
4674513 GATAATGAAAATCGCAACGCG
1 GA-AATGAAAATCGCAACG-A
**
4674534 GAAATGACTATCGCAACGA
1 GAAATGAAAATCGCAACGA
4674553 GA
1 GA
4674555 GAATCGCAAC
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
19 4 0.11
20 29 0.83
21 2 0.06
ACGTcount: A:0.46, C:0.20, G:0.23, T:0.11
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGA
Found at i:4674596 original size:23 final size:24
Alignment explanation
Indices: 4674549--4674595 Score: 85
Period size: 25 Copynumber: 1.9 Consensus size: 24
4674539 GACTATCGCA
4674549 ACGAGAGAATCGCAACGCGAAAAAT
1 ACGAGAGAATCGCAACGCG-AAAAT
4674574 ACGAGAGAATCGCAACGCGAAA
1 ACGAGAGAATCGCAACGCGAAA
4674596 TGAAAATCGC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 3 0.14
25 19 0.86
ACGTcount: A:0.47, C:0.21, G:0.26, T:0.06
Consensus pattern (24 bp):
ACGAGAGAATCGCAACGCGAAAAT
Found at i:4675218 original size:20 final size:20
Alignment explanation
Indices: 4675193--4675304 Score: 73
Period size: 20 Copynumber: 5.5 Consensus size: 20
4675183 GCTATGTAAA
4675193 TCGCATTGCGATAGTAAG-AT
1 TCGCATTGCGAT-GTAAGTAT
* *
4675213 TCGCATTGCGATTTACGTAT
1 TCGCATTGCGATGTAAGTAT
* ***
4675233 TCGCATTGCGATTTTCCTAAT
1 TCGCATTGCGATGTAAGT-AT
* ** *
4675254 TCGCATTGCGATTTACTTAA
1 TCGCATTGCGATGTAAGTAT
* * *
4675274 TCGCGTTGCGATTTACGTAT
1 TCGCATTGCGATGTAAGTAT
*
4675294 TCGTATTGCGA
1 TCGCATTGCGA
4675305 ATTATGAAAA
Statistics
Matches: 78, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
19 3 0.04
20 57 0.73
21 18 0.23
ACGTcount: A:0.21, C:0.20, G:0.21, T:0.38
Consensus pattern (20 bp):
TCGCATTGCGATGTAAGTAT
Found at i:4675263 original size:41 final size:40
Alignment explanation
Indices: 4675211--4675304 Score: 125
Period size: 41 Copynumber: 2.3 Consensus size: 40
4675201 CGATAGTAAG
* *
4675211 ATTCGCATTGCGATTTACGTATTCGCATTGCGATTTTCCT
1 ATTCGCATTGCGATTTACGTAATCGCATTGCGATTTACCT
* * *
4675251 AATTCGCATTGCGATTTACTTAATCGCGTTGCGATTTACGT
1 -ATTCGCATTGCGATTTACGTAATCGCATTGCGATTTACCT
*
4675292 ATTCGTATTGCGA
1 ATTCGCATTGCGA
4675305 ATTATGAAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
40 12 0.26
41 35 0.74
ACGTcount: A:0.20, C:0.20, G:0.19, T:0.40
Consensus pattern (40 bp):
ATTCGCATTGCGATTTACGTAATCGCATTGCGATTTACCT
Found at i:4675327 original size:21 final size:21
Alignment explanation
Indices: 4675301--4675356 Score: 69
Period size: 20 Copynumber: 2.7 Consensus size: 21
4675291 TATTCGTATT
*
4675301 GCGAATTATGAAAATCGCAAC
1 GCGAATTACGAAAATCGCAAC
* *
4675322 GCGAA-TACGTAAATCGCAAT
1 GCGAATTACGAAAATCGCAAC
*
4675342 GCGAATTAGGAAAAT
1 GCGAATTACGAAAAT
4675357 TGCATTGCGA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
20 17 0.59
21 12 0.41
ACGTcount: A:0.43, C:0.16, G:0.21, T:0.20
Consensus pattern (21 bp):
GCGAATTACGAAAATCGCAAC
Found at i:4675365 original size:21 final size:21
Alignment explanation
Indices: 4675300--4675366 Score: 73
Period size: 21 Copynumber: 3.2 Consensus size: 21
4675290 GTATTCGTAT
*
4675300 TGCGAATTATGAAAATCGCAA
1 TGCGAATTACGAAAATCGCAA
* *
4675321 CGCGAA-TACGTAAATCGCAA
1 TGCGAATTACGAAAATCGCAA
* * *
4675341 TGCGAATTAGGAAAATTGCAT
1 TGCGAATTACGAAAATCGCAA
4675362 TGCGA
1 TGCGA
4675367 TAGTCAGTAT
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
20 17 0.46
21 20 0.54
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.22
Consensus pattern (21 bp):
TGCGAATTACGAAAATCGCAA
Found at i:4675405 original size:21 final size:20
Alignment explanation
Indices: 4675379--4675427 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
4675369 GTCAGTATCT
*
4675379 CATTGCGATTTTCCAAATTCG
1 CATTGCGA-TTTACAAATTCG
**
4675400 CATTGCGATTTACTTATTCG
1 CATTGCGATTTACAAATTCG
4675420 CATTGCGA
1 CATTGCGA
4675428 ATTGGGAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
20 17 0.68
21 8 0.32
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.39
Consensus pattern (20 bp):
CATTGCGATTTACAAATTCG
Found at i:4675442 original size:41 final size:40
Alignment explanation
Indices: 4675211--4675442 Score: 110
Period size: 41 Copynumber: 5.7 Consensus size: 40
4675201 CGATAGTAAG
* * * * * *
4675211 ATTCGCATTGCGATTTACG-TATTCGCATTGCGATTTTCCTA
1 ATTCGCATTGCGAATTAGGAAAATCGCATTGCGA--TTACTT
* *** * *
4675252 ATTCGCATTGCGATTTA-CTTAATCGCGTTGCGATTTACGT
1 ATTCGCATTGCGAATTAGGAAAATCGCATTGCGA-TTACTT
* * ** * *
4675292 ATTCGTATTGCGAATTATGAAAATCGCAACGCGAATACGTA
1 ATTCGCATTGCGAATTAGGAAAATCGCATTGCGATTAC-TT
* * * * *
4675333 AATCGCAATGCGAATTAGGAAAATTGCATTGCGA-TAGTC
1 ATTCGCATTGCGAATTAGGAAAATCGCATTGCGATTACTT
* * *** *
4675372 AGTATCTCATTGCGATTTTCCAAATTCGCATTGCGATTTACTT
1 A-T-TCGCATTGCGAATTAGGAAAATCGCATTGCGA-TTACTT
*
4675415 ATTCGCATTGCGAATTGGGAAAATCGCA
1 ATTCGCATTGCGAATTAGGAAAATCGCA
4675443 ACGCGAAATT
Statistics
Matches: 141, Mismatches: 43, Indels: 14
0.71 0.22 0.07
Matches are distributed among these distances:
39 2 0.01
40 24 0.17
41 110 0.78
42 1 0.01
43 4 0.03
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (40 bp):
ATTCGCATTGCGAATTAGGAAAATCGCATTGCGATTACTT
Found at i:4675469 original size:21 final size:22
Alignment explanation
Indices: 4675417--4675469 Score: 74
Period size: 21 Copynumber: 2.5 Consensus size: 22
4675407 ATTTACTTAT
4675417 TCGCATTGCG-AATTGGGAAAA
1 TCGCATTGCGAAATTGGGAAAA
**
4675438 TCGCAACGCGAAATT-GGAAAA
1 TCGCATTGCGAAATTGGGAAAA
4675459 TCGCATTGCGA
1 TCGCATTGCGA
4675470 TAGTCATAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 23 0.85
22 4 0.15
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.21
Consensus pattern (22 bp):
TCGCATTGCGAAATTGGGAAAA
Found at i:4676199 original size:60 final size:59
Alignment explanation
Indices: 4676131--4676269 Score: 147
Period size: 60 Copynumber: 2.3 Consensus size: 59
4676121 TATCTCAGAT
* * *
4676131 TAATTTAGAAAGAGAGTCACA-ATGAAAGGATAAAATTATAATGTTTCAAAGTTTAAGGAC
1 TAATTTAGAAAGAGAGTCACAGATG-AA-GATAAAATTAGAATATATCAAAGTTTAAGGAC
* * * * * *
4676191 TAATTTAGAATGAAAGTCATAGTTTGAAGATAAAATTAGAATATATGAAAGTTTAAGGAT
1 TAATTTAGAAAGAGAGTCACAG-ATGAAGATAAAATTAGAATATATCAAAGTTTAAGGAC
4676251 TAATTTA-AAATGAGAGTCA
1 TAATTTAGAAA-GAGAGTCA
4676270 TGGTTTAAGA
Statistics
Matches: 65, Mismatches: 11, Indels: 6
0.79 0.13 0.07
Matches are distributed among these distances:
59 2 0.03
60 59 0.91
61 2 0.03
62 2 0.03
ACGTcount: A:0.47, C:0.04, G:0.18, T:0.31
Consensus pattern (59 bp):
TAATTTAGAAAGAGAGTCACAGATGAAGATAAAATTAGAATATATCAAAGTTTAAGGAC
Found at i:4676270 original size:60 final size:59
Alignment explanation
Indices: 4676159--4676279 Score: 161
Period size: 60 Copynumber: 2.0 Consensus size: 59
4676149 ACAATGAAAG
* * * *
4676159 GATAAAATTATAATGTTTCAAAGTTTAAGGACTAATTTAGAATGAAAGTCATAGTTTGAA
1 GATAAAATTAGAATATATCAAAGTTTAAGGACTAATTTAAAATGAAAGTCATAGTTT-AA
* * * *
4676219 GATAAAATTAGAATATATGAAAGTTTAAGGATTAATTTAAAATGAGAGTCATGGTTTAA
1 GATAAAATTAGAATATATCAAAGTTTAAGGACTAATTTAAAATGAAAGTCATAGTTTAA
4676278 GA
1 GA
4676280 ACATATAATA
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
59 4 0.08
60 49 0.92
ACGTcount: A:0.45, C:0.03, G:0.18, T:0.34
Consensus pattern (59 bp):
GATAAAATTAGAATATATCAAAGTTTAAGGACTAATTTAAAATGAAAGTCATAGTTTAA
Found at i:4676700 original size:15 final size:17
Alignment explanation
Indices: 4676679--4676719 Score: 52
Period size: 15 Copynumber: 2.6 Consensus size: 17
4676669 ATGTAGTTAA
*
4676679 AATTATTTTA-TATTTT
1 AATTATTTTAGTATATT
4676695 AA-TA-TTTAGTATATT
1 AATTATTTTAGTATATT
4676710 AATTATTTTA
1 AATTATTTTA
4676720 AAATTTTATG
Statistics
Matches: 21, Mismatches: 1, Indels: 5
0.78 0.04 0.19
Matches are distributed among these distances:
14 4 0.19
15 9 0.43
16 4 0.19
17 4 0.19
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (17 bp):
AATTATTTTAGTATATT
Found at i:4677045 original size:21 final size:20
Alignment explanation
Indices: 4676998--4677045 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 20
4676988 AATATTTTAT
**
4676998 ATTTTATAATTTATATTTAA
1 ATTTTATAATTTATATCAAA
4677018 ATATTTATAATTTAATATCAAA
1 AT-TTTATAATTT-ATATCAAA
4677040 ATTTTA
1 ATTTTA
4677046 CTTGTTAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 2 0.08
21 14 0.58
22 8 0.33
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (20 bp):
ATTTTATAATTTATATCAAA
Found at i:4680390 original size:117 final size:118
Alignment explanation
Indices: 4680238--4680476 Score: 385
Period size: 117 Copynumber: 2.0 Consensus size: 118
4680228 AGAAGTCACC
4680238 ATGTGATCCGGGCGACTTCCAGTTTCTCTTTTTTTCTTGTATTGAGCAGGTTATACTAACATTGA
1 ATGTGATCCGGGCGACTTCCAGTTTCTCTTTTTTTCTTGTATTGAGCAGGTTATACTAACATTGA
4680303 TCTTT-GAGCATGGAAAAATTGTGGAAAAA-TG-CCATTGAAGGAATGTGTAACG
66 TCTTTAG-GCATGGAAAAA-TGTGGAAAAAGTGCCCATTGAAGGAATGTGTAACG
* *
4680355 ATGTGATCCGGGCTACTTTCAGTTTCTCTTTTTTTCTTGTATTGAGCAGGTTATACTAACATTGA
1 ATGTGATCCGGGCGACTTCCAGTTTCTCTTTTTTTCTTGTATTGAGCAGGTTATACTAACATTGA
4680420 TCTTTAGGCATGGAAAAATGTGGAAAAATGTGCCTACCATTGAAGGAATGTGTAACG
66 TCTTTAGGCATGGAAAAATGTGGAAAAA-GTG-C--CCATTGAAGGAATGTGTAACG
4680477 TAGACGACCC
Statistics
Matches: 113, Mismatches: 2, Indels: 9
0.91 0.02 0.07
Matches are distributed among these distances:
116 10 0.09
117 79 0.70
118 3 0.03
122 21 0.19
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.36
Consensus pattern (118 bp):
ATGTGATCCGGGCGACTTCCAGTTTCTCTTTTTTTCTTGTATTGAGCAGGTTATACTAACATTGA
TCTTTAGGCATGGAAAAATGTGGAAAAAGTGCCCATTGAAGGAATGTGTAACG
Found at i:4680971 original size:38 final size:39
Alignment explanation
Indices: 4680920--4680997 Score: 131
Period size: 38 Copynumber: 2.0 Consensus size: 39
4680910 AGCATGTAGG
**
4680920 AATTGATGAGATGGGCGAAATTGT-AAAAAATAAATTGT
1 AATTGATGAGATGGAAGAAATTGTAAAAAAATAAATTGT
4680958 AATTGATGAGATGGAAGAAATTGTAAAAAAATAAATTGT
1 AATTGATGAGATGGAAGAAATTGTAAAAAAATAAATTGT
4680997 A
1 A
4680998 GTTAAAAGAT
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
38 22 0.59
39 15 0.41
ACGTcount: A:0.49, C:0.01, G:0.22, T:0.28
Consensus pattern (39 bp):
AATTGATGAGATGGAAGAAATTGTAAAAAAATAAATTGT
Found at i:4681175 original size:32 final size:32
Alignment explanation
Indices: 4681132--4681196 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
4681122 AAATTTAATC
*
4681132 GAAACAGACTTAAAATGAACAAGGAATTAGGA
1 GAAACAAACTTAAAATGAACAAGGAATTAGGA
4681164 GAAACAAACTTAAAATGAACAAGGAATTAGGA
1 GAAACAAACTTAAAATGAACAAGGAATTAGGA
4681196 G
1 G
4681197 TATTCGATCT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.54, C:0.09, G:0.22, T:0.15
Consensus pattern (32 bp):
GAAACAAACTTAAAATGAACAAGGAATTAGGA
Found at i:4684094 original size:154 final size:154
Alignment explanation
Indices: 4683814--4684121 Score: 616
Period size: 154 Copynumber: 2.0 Consensus size: 154
4683804 ATACAAGTTT
4683814 TGGGATTCGATTTCAAAGAAAGTGGTGATCAATAGATATATGGTTTTTGATGAGCAGTTCATGTT
1 TGGGATTCGATTTCAAAGAAAGTGGTGATCAATAGATATATGGTTTTTGATGAGCAGTTCATGTT
4683879 GCAGCAGAACCAAGACAAGGTAGTGATGGATGTAGAACAATATCCAGTAGCAACTAAGAAAGAGG
66 GCAGCAGAACCAAGACAAGGTAGTGATGGATGTAGAACAATATCCAGTAGCAACTAAGAAAGAGG
4683944 AAAGTTCTAATCCAACTTTTGGTG
131 AAAGTTCTAATCCAACTTTTGGTG
4683968 TGGGATTCGATTTCAAAGAAAGTGGTGATCAATAGATATATGGTTTTTGATGAGCAGTTCATGTT
1 TGGGATTCGATTTCAAAGAAAGTGGTGATCAATAGATATATGGTTTTTGATGAGCAGTTCATGTT
4684033 GCAGCAGAACCAAGACAAGGTAGTGATGGATGTAGAACAATATCCAGTAGCAACTAAGAAAGAGG
66 GCAGCAGAACCAAGACAAGGTAGTGATGGATGTAGAACAATATCCAGTAGCAACTAAGAAAGAGG
4684098 AAAGTTCTAATCCAACTTTTGGTG
131 AAAGTTCTAATCCAACTTTTGGTG
4684122 GTTCTAGTAT
Statistics
Matches: 154, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
154 154 1.00
ACGTcount: A:0.35, C:0.12, G:0.25, T:0.27
Consensus pattern (154 bp):
TGGGATTCGATTTCAAAGAAAGTGGTGATCAATAGATATATGGTTTTTGATGAGCAGTTCATGTT
GCAGCAGAACCAAGACAAGGTAGTGATGGATGTAGAACAATATCCAGTAGCAACTAAGAAAGAGG
AAAGTTCTAATCCAACTTTTGGTG
Found at i:4686387 original size:25 final size:24
Alignment explanation
Indices: 4686358--4686408 Score: 93
Period size: 25 Copynumber: 2.1 Consensus size: 24
4686348 ATTGATCGTT
4686358 ATGATACTAACTTTGCAGAATCATG
1 ATGATACTAACTTTGCAG-ATCATG
4686383 ATGATACTAACTTTGCAGATCATG
1 ATGATACTAACTTTGCAGATCATG
4686407 AT
1 AT
4686409 ACTGACATGA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 8 0.31
25 18 0.69
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Consensus pattern (24 bp):
ATGATACTAACTTTGCAGATCATG
Found at i:4686431 original size:21 final size:21
Alignment explanation
Indices: 4686407--4686446 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
4686397 GCAGATCATG
*
4686407 ATACTGACATGACAATCTAAA
1 ATACTGACATGAAAATCTAAA
*
4686428 ATACTGACGTGAAAATCTA
1 ATACTGACATGAAAATCTA
4686447 TGTGGCAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.45, C:0.17, G:0.12, T:0.25
Consensus pattern (21 bp):
ATACTGACATGAAAATCTAAA
Found at i:4693341 original size:40 final size:36
Alignment explanation
Indices: 4693267--4693350 Score: 107
Period size: 40 Copynumber: 2.2 Consensus size: 36
4693257 AACTCAATGT
*
4693267 TAAATTTTTAATGGGATACTAAAATGAAATAAAAAC
1 TAAATTTTTAATGGGATACTAAAATGAAACAAAAAC
4693303 TAAAATTTTTAATGGCGATA-TAATTAAATGAAACAAAAAC
1 T-AAATTTTTAATGG-GATACT-A--AAATGAAACAAAAAC
4693343 TAAATTTT
1 TAAATTTT
4693351 AATCACAATT
Statistics
Matches: 42, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
36 1 0.02
37 14 0.33
38 5 0.12
39 7 0.17
40 15 0.36
ACGTcount: A:0.51, C:0.06, G:0.10, T:0.33
Consensus pattern (36 bp):
TAAATTTTTAATGGGATACTAAAATGAAACAAAAAC
Found at i:4694512 original size:22 final size:22
Alignment explanation
Indices: 4694486--4694545 Score: 75
Period size: 23 Copynumber: 2.7 Consensus size: 22
4694476 TTTGATTTTT
*
4694486 TTTAAAAATAAAATATTTTAAA
1 TTTAAAAATAAAATATTTAAAA
*
4694508 TTTAAAATATAAAACATTTAAAA
1 TTTAAAA-ATAAAATATTTAAAA
* *
4694531 ATTAAATATAAAATA
1 TTTAAAAATAAAATA
4694546 AGAAAAATAA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
22 14 0.44
23 18 0.56
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.37
Consensus pattern (22 bp):
TTTAAAAATAAAATATTTAAAA
Found at i:4694526 original size:23 final size:23
Alignment explanation
Indices: 4694486--4694543 Score: 75
Period size: 22 Copynumber: 2.6 Consensus size: 23
4694476 TTTGATTTTT
* *
4694486 TTTAAAA-ATAAAATATTTTAAA
1 TTTAAAATATAAAACATTTAAAA
4694508 TTTAAAATATAAAACATTTAAAA
1 TTTAAAATATAAAACATTTAAAA
*
4694531 ATT-AAATATAAAA
1 TTTAAAATATAAAA
4694544 TAAGAAAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
22 17 0.53
23 15 0.47
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (23 bp):
TTTAAAATATAAAACATTTAAAA
Found at i:4699513 original size:148 final size:148
Alignment explanation
Indices: 4699245--4699542 Score: 596
Period size: 148 Copynumber: 2.0 Consensus size: 148
4699235 TGAAATCCTT
4699245 ATATGTTTTGTAAACCTACTAGGTTAAACACATTCGAAACAACTAAAAACAATACACAAAGAGTT
1 ATATGTTTTGTAAACCTACTAGGTTAAACACATTCGAAACAACTAAAAACAATACACAAAGAGTT
4699310 TTCTTTCTTTCTTTCTAGTTTTTTTTGTGATAGATGAAGGCAATGAATAGTTCATGATTTTTACA
66 TTCTTTCTTTCTTTCTAGTTTTTTTTGTGATAGATGAAGGCAATGAATAGTTCATGATTTTTACA
4699375 GAAATGCAACTGTAGTTG
131 GAAATGCAACTGTAGTTG
4699393 ATATGTTTTGTAAACCTACTAGGTTAAACACATTCGAAACAACTAAAAACAATACACAAAGAGTT
1 ATATGTTTTGTAAACCTACTAGGTTAAACACATTCGAAACAACTAAAAACAATACACAAAGAGTT
4699458 TTCTTTCTTTCTTTCTAGTTTTTTTTGTGATAGATGAAGGCAATGAATAGTTCATGATTTTTACA
66 TTCTTTCTTTCTTTCTAGTTTTTTTTGTGATAGATGAAGGCAATGAATAGTTCATGATTTTTACA
4699523 GAAATGCAACTGTAGTTG
131 GAAATGCAACTGTAGTTG
4699541 AT
1 AT
4699543 CATCTAATTG
Statistics
Matches: 150, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
148 150 1.00
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.37
Consensus pattern (148 bp):
ATATGTTTTGTAAACCTACTAGGTTAAACACATTCGAAACAACTAAAAACAATACACAAAGAGTT
TTCTTTCTTTCTTTCTAGTTTTTTTTGTGATAGATGAAGGCAATGAATAGTTCATGATTTTTACA
GAAATGCAACTGTAGTTG
Found at i:4705415 original size:32 final size:31
Alignment explanation
Indices: 4705347--4705419 Score: 80
Period size: 30 Copynumber: 2.4 Consensus size: 31
4705337 ATCAAGAACA
* *
4705347 AAAAAGAAAAGAAGTAAAGAAGCAAAAAAATC
1 AAAAAGAAAA-AAGGAAACAAGCAAAAAAATC
4705379 --AAAGAAAAAAGAGAAACAAG-AACAAAAATC
1 AAAAAGAAAAAAG-GAAACAAGCAA-AAAAATC
4705409 AAAAAGAAAAA
1 AAAAAGAAAAA
4705420 GGGATAAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
29 5 0.14
30 21 0.60
32 9 0.26
ACGTcount: A:0.75, C:0.07, G:0.14, T:0.04
Consensus pattern (31 bp):
AAAAAGAAAAAAGGAAACAAGCAAAAAAATC
Found at i:4705653 original size:164 final size:164
Alignment explanation
Indices: 4705463--4705785 Score: 515
Period size: 164 Copynumber: 2.0 Consensus size: 164
4705453 ACAAATGGTG
4705463 CATCAAGCTTCAAACTATGAGATTGATCAAGCACAATCATTCCCGAATCACTTCACTCAAAGATC
1 CATCAAGCTTCAAACTATGAGATTGATCAAGCACAATCATTCCCGAATCACTTCACTCAAAGATC
* * *
4705528 ATAGAGCATCAAGAGAGAGAAATATTTTGAGCA-G-GATTGAAGACATCATAATGAATTGATCCT
66 ATAGAGCATCAAGAGAGAG--ACATTTTGAGCAGGAGATTGAAGACATCAGAATGAATTAATCCT
*
4705591 TGGTTCAACACCCTAAAACACTTGTTTGAAATGGCA
129 TGGTTCAACACCCTAAAACACTTATTTGAAATGGCA
*
4705627 CATCAAGCTTCAAACTATGAGATTGATCAAGCACAATCATTCCCGAATCACTTCACTCGAAGATC
1 CATCAAGCTTCAAACTATGAGATTGATCAAGCACAATCATTCCCGAATCACTTCACTCAAAGATC
* *
4705692 ATAGAGTATCAAGAGAGAGACATTTTGAGCAGGACATGATTGAAGGCATCAGAATGAATTAATCC
66 ATAGAGCATCAAGAGAGAGACATTTTGAGCAGG--A-GATTGAAGACATCAGAATGAATTAATCC
*
4705757 TTGGTTCAACACCCTGAAACACTTATTTG
128 TTGGTTCAACACCCTAAAACACTTATTTG
4705786 GGCCTATTTA
Statistics
Matches: 146, Mismatches: 8, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
162 11 0.08
163 1 0.01
164 82 0.56
167 52 0.36
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26
Consensus pattern (164 bp):
CATCAAGCTTCAAACTATGAGATTGATCAAGCACAATCATTCCCGAATCACTTCACTCAAAGATC
ATAGAGCATCAAGAGAGAGACATTTTGAGCAGGAGATTGAAGACATCAGAATGAATTAATCCTTG
GTTCAACACCCTAAAACACTTATTTGAAATGGCA
Found at i:4706253 original size:22 final size:22
Alignment explanation
Indices: 4706179--4706255 Score: 127
Period size: 22 Copynumber: 3.5 Consensus size: 22
4706169 GCTACCCCAT
* *
4706179 CAAACCGTTAAGCATCAAATGC
1 CAAACCTTTGAGCATCAAATGC
*
4706201 CAAACCTATGAGCATCAAATGC
1 CAAACCTTTGAGCATCAAATGC
4706223 CAAACCTTTGAGCATCAAATGC
1 CAAACCTTTGAGCATCAAATGC
4706245 CAAACCTTTGA
1 CAAACCTTTGA
4706256 CCAAACATAT
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 51 1.00
ACGTcount: A:0.39, C:0.27, G:0.13, T:0.21
Consensus pattern (22 bp):
CAAACCTTTGAGCATCAAATGC
Found at i:4707212 original size:106 final size:106
Alignment explanation
Indices: 4707055--4707818 Score: 1161
Period size: 106 Copynumber: 7.2 Consensus size: 106
4707045 ATATCGTGCC
* * * * *
4707055 ACTCAAGACAACACAATTTCAACTTCACAACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
*
4707120 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* *
4707161 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
4707226 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* *
4707267 ACTCCAGACAACGCAAGTTCAACTTCACAACGAAGGGACCGCTGGTTGTCAACAAACGAA-TTCT
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAAC-AACTTCC
*
4707331 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
65 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * * * * * * * * *
4707373 ACTCCAGGCAATGTAAGTTCAACTTTAGGATGAAGGGATCACTGGTTGTCAATAAACAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
* *
4707438 AATTTCAGAGCCAATTTCAACTTCACAGCGTAGGTTATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * * **
4707479 ACTCAAGAAAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTCAA
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
*
4707544 AATTTTAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* *
4707585 ACTCCAGACAACGCAAGTTCAACATCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
** * *
4707650 AATTTCTTAGCCAATTTCAACTTCACAACGAATGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * *
4707691 ACTCCAGACAACGCAAGTTCAACTTCACGATGAAGGGACCGCTGGTTGTTAACAAACAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
4707756 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
*
4707797 ACTCAAGACAACGCAAGTTCAA
1 ACTCCAGACAACGCAAGTTCAA
4707819 AACTTCACAT
Statistics
Matches: 593, Mismatches: 63, Indels: 4
0.90 0.10 0.01
Matches are distributed among these distances:
105 2 0.00
106 589 0.99
107 2 0.00
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.23
Consensus pattern (106 bp):
ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
Found at i:4707833 original size:45 final size:45
Alignment explanation
Indices: 4707774--4707863 Score: 153
Period size: 45 Copynumber: 2.0 Consensus size: 45
4707764 AGCCAATTTC
4707774 AACTTCACAGCGAAGGATATTGGACTCAAGACAACGCAAGTTCAA
1 AACTTCACAGCGAAGGATATTGGACTCAAGACAACGCAAGTTCAA
* * *
4707819 AACTTCACATCGAAGGATATTGGGCTCCAGACAACGCAAGTTCAA
1 AACTTCACAGCGAAGGATATTGGACTCAAGACAACGCAAGTTCAA
4707864 CTTCACGACG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.38, C:0.23, G:0.20, T:0.19
Consensus pattern (45 bp):
AACTTCACAGCGAAGGATATTGGACTCAAGACAACGCAAGTTCAA
Found at i:4707864 original size:151 final size:151
Alignment explanation
Indices: 4707668--4707983 Score: 510
Period size: 151 Copynumber: 2.1 Consensus size: 151
4707658 AGCCAATTTC
* *
4707668 AACTTCACAACGAATGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGATGAAGGGACCGC
1 AACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGC
* * *
4707733 TGGTTGTTAACAAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGA
66 TGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGA
4707798 CTCAAGACAACGCAAGTTCAA
131 CTCAAGACAACGCAAGTTCAA
* * *
4707819 AACTTCACATCGAAGGATATTGGGCTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGATCGC
1 AACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGC
*
4707884 TGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGA
66 TGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGA
**
4707949 CTCCGGACAACGCAAGTTC--
131 CTCAAGACAACGCAAGTTCAA
*
4707968 AACTTCACGACGAAGG
1 AACTTCACAACGAAGG
4707984 GACCGCTGGT
Statistics
Matches: 152, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
149 14 0.09
151 138 0.91
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.22
Consensus pattern (151 bp):
AACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGC
TGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGA
CTCAAGACAACGCAAGTTCAA
Found at i:4708018 original size:257 final size:255
Alignment explanation
Indices: 4707559--4708089 Score: 891
Period size: 257 Copynumber: 2.1 Consensus size: 255
4707549 TAGAGCCAAT
*
4707559 TTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACATCACGACGAAGGGAC
1 TTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACATCACGACGAAGGGAC
** *
4707624 CGCTGGTTGTCAACAAACAACTTCTCAATTTCTTAGCCAATTTCAACTTCACAACGAATGATATT
66 CGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATT
* * *
4707689 GGACTCCAGACAACGCAAGTTCAACTTCACGATGAAGGGACCGCTGGTTGTTAACAAACAATTTC
131 GGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTC
* * *
4707754 CCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAACGCAAG
196 CCAATTTCAGAGCCAATTTCAACTTCACAACAAAGGATATTGGACTCAAGACAACACAAG
* * *
4707814 TTCAAAACTTCACATCGAAGGATATTGGGCTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
1 TTC--AACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACATCACGACGAAGGG
*
4707879 ATCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATA
64 ACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATA
*
4707944 TTGGACTCCGGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACT
129 TTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACT
* *
4708009 TCCCAATTTCAGAGCCAATTTCAACTTCACAACAAAGGATATTGGACTCGAGATAACACAAG
194 TCCCAATTTCAGAGCCAATTTCAACTTCACAACAAAGGATATTGGACTCAAGACAACACAAG
4708071 TTCAACTTCACAACGAAGG
1 TTCAACTTCACAACGAAGG
4708090 GACGGCTGGT
Statistics
Matches: 257, Mismatches: 17, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
255 18 0.07
257 239 0.93
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.22
Consensus pattern (255 bp):
TTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACATCACGACGAAGGGAC
CGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATT
GGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTC
CCAATTTCAGAGCCAATTTCAACTTCACAACAAAGGATATTGGACTCAAGACAACACAAG
Found at i:4708157 original size:363 final size:363
Alignment explanation
Indices: 4707456--4708144 Score: 1126
Period size: 363 Copynumber: 1.9 Consensus size: 363
4707446 AGCCAATTTC
* *
4707456 AACTTCACAGCGTAGGTTATTGGACTCAAGAAAACGCAAGTTCAACTTCACGACGAAGGGACCGC
1 AACTTCACAGCGAAGGATATTGGACTCAAGAAAACGCAAGTTCAACTTCACGACGAAGGGACCGC
* * *
4707521 TGGTTGTCAATAAACAACTTCAAAATTTTAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGA
66 TGGTTGTCAACAAACAACTTCAAAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGA
*
4707586 CTCCAGACAACGCAAGTTCAACATCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTCA
131 CTCCAGACAACGCAAGTTCAACATCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCA
** * * *
4707651 ATTTCTTAGCCAATTTCAACTTCACAACGAATGATATTGGACTCCAGACAACGCAAGTTCAACTT
196 ATTTCAGAGCCAATTTCAACTTCACAACAAAGGATATTGGACTCCAGACAACACAAGTTCAACTT
* * * *
4707716 CACGATGAAGGGACCGCTGGTTGTTAACAAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCA
261 CACAACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCCAATTCCAGAGCCAATTTCAACTTCA
4707781 CAGCGAAGGATATTGGACTCAAGACAACGCAAGTTCAA
326 CAGCGAAGGATATTGGACTCAAGACAACGCAAGTTCAA
* * * * *
4707819 AACTTCACATCGAAGGATATTGGGCTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGATCGC
1 AACTTCACAGCGAAGGATATTGGACTCAAGAAAACGCAAGTTCAACTTCACGACGAAGGGACCGC
**
4707884 TGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGA
66 TGGTTGTCAACAAACAACTTCAAAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGA
* *
4707949 CTCCGGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCA
131 CTCCAGACAACGCAAGTTCAACATCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCA
* *
4708014 ATTTCAGAGCCAATTTCAACTTCACAACAAAGGATATTGGACTCGAGATAACACAAGTTCAACTT
196 ATTTCAGAGCCAATTTCAACTTCACAACAAAGGATATTGGACTCCAGACAACACAAGTTCAACTT
* *
4708079 CACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCCGATTCCAGAGCCAATTTCAACTTCA
261 CACAACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCCAATTCCAGAGCCAATTTCAACTTCA
4708144 C
326 C
4708145 GATGGAGGAT
Statistics
Matches: 298, Mismatches: 28, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
363 298 1.00
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (363 bp):
AACTTCACAGCGAAGGATATTGGACTCAAGAAAACGCAAGTTCAACTTCACGACGAAGGGACCGC
TGGTTGTCAACAAACAACTTCAAAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGA
CTCCAGACAACGCAAGTTCAACATCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCCA
ATTTCAGAGCCAATTTCAACTTCACAACAAAGGATATTGGACTCCAGACAACACAAGTTCAACTT
CACAACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCCAATTCCAGAGCCAATTTCAACTTCA
CAGCGAAGGATATTGGACTCAAGACAACGCAAGTTCAA
Found at i:4708164 original size:106 final size:105
Alignment explanation
Indices: 4707819--4708164 Score: 514
Period size: 106 Copynumber: 3.3 Consensus size: 105
4707809 GCAAGTTCAA
* * *
4707819 AACTTCACATCGAAGGATATTGGGCTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGATCGC
1 AACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTTCAACTTCACGACGAAGGGA-CGC
*
4707884 TGGTTGTCAACAAACAACTTCTCAATTTCAGAGCCAATTTC
65 TGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTC
4707925 AACTTCACAACGAAGGATATTGGACTCCG-GACAACGCAAGTTCAACTTCACGACGAAGGGACCG
1 AACTTCACAACGAAGGATATTGGACT-CGAGACAACGCAAGTTCAACTTCACGACGAAGGGA-CG
4707989 CTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTC
64 CTGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTC
* * * *
4708031 AACTTCACAACAAAGGATATTGGACTCGAGATAACACAAGTTCAACTTCACAACGAAGGGACGGC
1 AACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTTCAACTTCACGACGAAGGGAC-GC
* * *
4708096 TGGTTGTCAACAAACAATTTCCCGATTCCAGAGCCAATTTC
65 TGGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTC
* * * *
4708137 AACTTCACGATGGAGGATATTTGACTCG
1 AACTTCACAACGAAGGATATTGGACTCG
4708165 GAACAATGCT
Statistics
Matches: 220, Mismatches: 17, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
105 3 0.01
106 216 0.98
107 1 0.00
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.23
Consensus pattern (105 bp):
AACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTTCAACTTCACGACGAAGGGACGCT
GGTTGTCAACAAACAACTTCCCAATTTCAGAGCCAATTTC
Found at i:4709738 original size:20 final size:20
Alignment explanation
Indices: 4709685--4709727 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
4709675 TTTTATTTTA
* *
4709685 TTATACATACATTTTTATAT
1 TTATATATATATTTTTATAT
4709705 TTATATATATATTTTTAT-T
1 TTATATATATATTTTTATAT
4709724 TTAT
1 TTAT
4709728 TTGTACTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.63
Consensus pattern (20 bp):
TTATATATATATTTTTATAT
Found at i:4711747 original size:22 final size:22
Alignment explanation
Indices: 4711700--4711754 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
4711690 GAAACTGGGT
* *
4711700 AGTATCGATAC-TCTTGGCTAG
1 AGTATCGATACTTCTAGACTAG
4711721 AGTATCGATACTTCTAGACTAG
1 AGTATCGATACTTCTAGACTAG
* *
4711743 GGTATTGATACT
1 AGTATCGATACT
4711755 ATCCTAAGTA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
21 11 0.38
22 18 0.62
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.35
Consensus pattern (22 bp):
AGTATCGATACTTCTAGACTAG
Found at i:4713715 original size:24 final size:24
Alignment explanation
Indices: 4713669--4713714 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
4713659 TAAAAATAAC
4713669 GAATAAATATAAAAAACTAAAAAT
1 GAATAAATATAAAAAACTAAAAAT
* *
4713693 GAATAAA-ATTAAAAATTAAAAA
1 GAATAAATATAAAAAACTAAAAA
4713715 AGGATTGCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 13 0.65
24 7 0.35
ACGTcount: A:0.72, C:0.02, G:0.04, T:0.22
Consensus pattern (24 bp):
GAATAAATATAAAAAACTAAAAAT
Found at i:4719625 original size:21 final size:22
Alignment explanation
Indices: 4719587--4719628 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
4719577 ATTTAAAATT
*
4719587 TTAAAGGAAGTACCAATACTCA
1 TTAAAGGAAGTACAAATACTCA
4719609 TTAAAGG-AGTACAAATACTC
1 TTAAAGGAAGTACAAATACTC
4719629 CCTGTCCTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.45, C:0.17, G:0.14, T:0.24
Consensus pattern (22 bp):
TTAAAGGAAGTACAAATACTCA
Found at i:4722362 original size:3 final size:3
Alignment explanation
Indices: 4722354--4722407 Score: 67
Period size: 3 Copynumber: 18.0 Consensus size: 3
4722344 ATTTATTTGT
*
4722354 TTA TTA TTA TTA TAA TTA TTA -TA TATA TTA TTA -TA TATA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA T-TA TTA TTA
4722399 TTA TTA TTA
1 TTA TTA TTA
4722408 AAAAAAAATA
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
2 4 0.09
3 35 0.78
4 6 0.13
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:4722371 original size:12 final size:12
Alignment explanation
Indices: 4722355--4722399 Score: 74
Period size: 12 Copynumber: 3.8 Consensus size: 12
4722345 TTTATTTGTT
4722355 TATTATTAT-TA
1 TATTATTATATA
4722366 TAATTATTATATA
1 T-ATTATTATATA
4722379 TATTATTATATA
1 TATTATTATATA
4722391 TATTATTAT
1 TATTATTAT
4722400 TATTATTAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
11 1 0.03
12 28 0.88
13 3 0.09
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
TATTATTATATA
Done.