Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008428.1 Hibiscus syriacus cultivar Beakdansim tig00111213_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 6915314
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 27 of 30
Found at i:6298163 original size:94 final size:92
Alignment explanation
Indices: 6297971--6298163 Score: 194
Period size: 94 Copynumber: 2.1 Consensus size: 92
6297961 AATCGAACCA
** * * *
6297971 AAATTTATTTGAAAATTATTAACCGAACCGAATCAACCGATTTTTTTCTTTAATCATTAATCGAA
1 AAATTTATTTGAAAATTATTAACCGAACAAAATCAA-C-ATATTTTTCCTTAACCATTAATCGAA
* * * *
6298036 CCGAAATTATTTAACAGTTAATCGAATTG
64 CCGAAATTATTTAAAAATTAATCGAAATC
* *
6298065 AAATTTATTTGAAAATTATTAACCGAATAAAAT-AA-ATAATTTTTCCTTAACCGTTAATCGAAC
1 AAATTTATTTGAAAATTATTAACCGAACAAAATCAACAT-ATTTTTCCTTAACCATTAATCGAAC
*
6298128 TGAAATTTATTTGAAAATTATTAATC-AAATC
65 CGAAA-TTATTT-AAAA--ATTAATCGAAATC
6298159 AAATT
1 AAATT
6298164 ACCTGAATTT
Statistics
Matches: 82, Mismatches: 12, Indels: 10
0.79 0.12 0.10
Matches are distributed among these distances:
90 2 0.02
91 25 0.30
92 6 0.07
93 5 0.06
94 38 0.46
95 6 0.07
ACGTcount: A:0.42, C:0.12, G:0.08, T:0.38
Consensus pattern (92 bp):
AAATTTATTTGAAAATTATTAACCGAACAAAATCAACATATTTTTCCTTAACCATTAATCGAACC
GAAATTATTTAAAAATTAATCGAAATC
Found at i:6298218 original size:95 final size:94
Alignment explanation
Indices: 6298114--6298342 Score: 361
Period size: 95 Copynumber: 2.4 Consensus size: 94
6298104 TTTTTCCTTA
* * *
6298114 ACCGTTAATCGAACTGAAATTTATTTGAAAATTATTAATCAAATCAAATT-ACCTGAATTTTTTT
1 ACCGTTAATCGAACCGAAATTTATTTGAAAATTATTAACCAAACCAAATTAACC-GAATTTTTTT
*
6298178 CTTTAACCATTAATCGAACCGAAATTATTTG
65 CTTTAA-CATTAATCGAACCAAAATTATTTG
* *
6298209 ACCGTTAATCGAACCAAAATTTATTTGAAAATTATTAACCGAACCAAATTAACCGAATTTTTTTC
1 ACCGTTAATCGAACCGAAATTTATTTGAAAATTATTAACCAAACCAAATTAACCGAATTTTTTTC
6298274 TTTAACATTAATCGAACCAAAATTATTTG
66 TTTAACATTAATCGAACCAAAATTATTTG
* *
6298303 ACCGTTAATCGAACCGAAATGTATTTAAAAATTATTAACC
1 ACCGTTAATCGAACCGAAATTTATTTGAAAATTATTAACC
6298343 GATTAACGGA
Statistics
Matches: 124, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
94 60 0.48
95 61 0.49
96 3 0.02
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.36
Consensus pattern (94 bp):
ACCGTTAATCGAACCGAAATTTATTTGAAAATTATTAACCAAACCAAATTAACCGAATTTTTTTC
TTTAACATTAATCGAACCAAAATTATTTG
Found at i:6298328 original size:94 final size:95
Alignment explanation
Indices: 6298114--6298344 Score: 367
Period size: 94 Copynumber: 2.4 Consensus size: 95
6298104 TTTTTCCTTA
* * * *
6298114 ACCGTTAATCGAACTGAAATTTATTTGAAAATTATTAATCAAATCAAATTACCTGAATTTTTTTC
1 ACCGTTAATCGAACCGAAATTTATTTGAAAATTATTAACCGAACCAAATTACCTGAATTTTTTTC
*
6298179 TTTAACCATTAATCGAACCGAAATTATTTG
66 TTTAACCATTAATCGAACCAAAATTATTTG
*
6298209 ACCGTTAATCGAACCAAAATTTATTTGAAAATTATTAACCGAACCAAATTAACC-GAATTTTTTT
1 ACCGTTAATCGAACCGAAATTTATTTGAAAATTATTAACCGAACCAAATT-ACCTGAATTTTTTT
6298273 CTTTAA-CATTAATCGAACCAAAATTATTTG
65 CTTTAACCATTAATCGAACCAAAATTATTTG
* *
6298303 ACCGTTAATCGAACCGAAATGTATTTAAAAATTATTAACCGA
1 ACCGTTAATCGAACCGAAATTTATTTGAAAATTATTAACCGA
6298345 TTAACGGATA
Statistics
Matches: 126, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
94 62 0.49
95 61 0.48
96 3 0.02
ACGTcount: A:0.40, C:0.16, G:0.09, T:0.35
Consensus pattern (95 bp):
ACCGTTAATCGAACCGAAATTTATTTGAAAATTATTAACCGAACCAAATTACCTGAATTTTTTTC
TTTAACCATTAATCGAACCAAAATTATTTG
Found at i:6311512 original size:14 final size:14
Alignment explanation
Indices: 6311493--6311574 Score: 65
Period size: 14 Copynumber: 6.4 Consensus size: 14
6311483 TGTTCGATAA
6311493 TATGTTCGTTCATT
1 TATGTTCGTTCATT
6311507 TATGTTCG----TT
1 TATGTTCGTTCATT
*
6311517 TATATTCGTTCATT
1 TATGTTCGTTCATT
*
6311531 TATGTTAGTTC---
1 TATGTTCGTTCATT
*
6311542 -ATGTTCGTTCGTT
1 TATGTTCGTTCATT
6311555 TATGTGT-GTTCATT
1 TATGT-TCGTTCATT
6311569 TATGTT
1 TATGTT
6311575 TAGCACAATC
Statistics
Matches: 54, Mismatches: 5, Indels: 19
0.69 0.06 0.24
Matches are distributed among these distances:
10 18 0.33
13 1 0.02
14 34 0.63
15 1 0.02
ACGTcount: A:0.15, C:0.11, G:0.17, T:0.57
Consensus pattern (14 bp):
TATGTTCGTTCATT
Found at i:6311529 original size:24 final size:24
Alignment explanation
Indices: 6311497--6311567 Score: 90
Period size: 24 Copynumber: 3.0 Consensus size: 24
6311487 CGATAATATG
* *
6311497 TTCGTTCATTTATGTTCGTTTATA
1 TTCGTTCATTTATGTTAGTTCATA
*
6311521 TTCGTTCATTTATGTTAGTTCATG
1 TTCGTTCATTTATGTTAGTTCATA
*
6311545 TTCGTTCGTTTATGTGT-GTTCAT
1 TTCGTTCATTTATGT-TAGTTCAT
6311568 TTATGTTTAG
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
24 41 0.98
25 1 0.02
ACGTcount: A:0.14, C:0.13, G:0.17, T:0.56
Consensus pattern (24 bp):
TTCGTTCATTTATGTTAGTTCATA
Found at i:6311552 original size:38 final size:38
Alignment explanation
Indices: 6311493--6311574 Score: 105
Period size: 38 Copynumber: 2.2 Consensus size: 38
6311483 TGTTCGATAA
* *
6311493 TATGTTCGTTCATTTATGTTCGTTTATAT-TCGTTCATT
1 TATGTTAGTTCATTTACGTTCGTTTATATGT-GTTCATT
*
6311531 TATGTTAGTTCATGTT-CGTTCGTTTATGTGTGTTCATT
1 TATGTTAGTTCAT-TTACGTTCGTTTATATGTGTTCATT
6311569 TATGTT
1 TATGTT
6311575 TAGCACAATC
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
38 36 0.92
39 3 0.08
ACGTcount: A:0.15, C:0.11, G:0.17, T:0.57
Consensus pattern (38 bp):
TATGTTAGTTCATTTACGTTCGTTTATATGTGTTCATT
Found at i:6313410 original size:17 final size:17
Alignment explanation
Indices: 6313380--6313426 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
6313370 CAAAAAAATG
* *
6313380 AAAATAAAATTAATAA-
1 AAAAGAAAAATAATAAT
6313396 AAGAAGAAAAATAATAAT
1 AA-AAGAAAAATAATAAT
*
6313414 AAAATAAAAATAA
1 AAAAGAAAAATAA
6313427 ATAACAAAGT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
16 2 0.08
17 22 0.85
18 2 0.08
ACGTcount: A:0.77, C:0.00, G:0.04, T:0.19
Consensus pattern (17 bp):
AAAAGAAAAATAATAAT
Found at i:6313535 original size:36 final size:35
Alignment explanation
Indices: 6313488--6313853 Score: 267
Period size: 36 Copynumber: 10.4 Consensus size: 35
6313478 TTCAAAAACC
* *
6313488 TATATAATATATATTTTCAAAAGTGTTTTAAAATTA
1 TATATTATATATATTTTCAAAA-TGTTTTAAAACTA
**
6313524 TATATTATATATATTTTTTTTAAATGTTTT----C-A
1 TATATTATATATA--TTTTCAAAATGTTTTAAAACTA
* *
6313556 -AAATTATATA-GTTTTCAAAAATGTTTTTAAAACTA
1 TATATTATATATATTTTC-AAAATG-TTTTAAAACTA
* * *
6313591 TATACTATATA-ATTTTTCAAAATGATTTCAAAATTA
1 TATATTATATATA-TTTTCAAAATG-TTTTAAAACTA
* * *
6313627 TATAATATATATGTTTTCAAAATGTTTT-TAA--A
1 TATATTATATATATTTTCAAAATGTTTTAAAACTA
* *
6313659 -A-ACTCTATATATTTTCAAAATGTTTTAAAAACTA
1 TATATTATATATATTTTCAAAATGTTTT-AAAACTA
*
6313693 TATA--ATATATATTTTCAAAAATATTTTAAAAACTA
1 TATATTATATATATTTTC-AAAATGTTTT-AAAACTA
*
6313728 TATATTATATTTATTTTCAAAATGTTTTTAAAAACTA
1 TATATTATATATATTTTCAAAATG-TTTT-AAAACTA
* * *
6313765 TATAATATATAAATGTTTTCAAACATGTTTTCAAAACCA
1 TAT-AT-TATATATATTTTCAAA-ATGTTTT-AAAACTA
* * *
6313804 TATATTATATATATTTTTAAAAATATTTTCAAACTA
1 TATATTATATATA-TTTTCAAAATGTTTTAAAACTA
*
6313840 TATACTATATATAT
1 TATATTATATATAT
6313854 ATATGATAAA
Statistics
Matches: 266, Mismatches: 38, Indels: 53
0.75 0.11 0.15
Matches are distributed among these distances:
28 4 0.02
29 5 0.02
30 26 0.10
31 10 0.04
32 4 0.02
34 15 0.06
35 27 0.10
36 79 0.30
37 49 0.18
38 18 0.07
39 26 0.10
40 3 0.01
ACGTcount: A:0.43, C:0.07, G:0.03, T:0.47
Consensus pattern (35 bp):
TATATTATATATATTTTCAAAATGTTTTAAAACTA
Found at i:6313601 original size:65 final size:64
Alignment explanation
Indices: 6313495--6313630 Score: 175
Period size: 65 Copynumber: 2.1 Consensus size: 64
6313485 ACCTATATAA
* * * ** *
6313495 TATATATTTTCAAAAGTGTTTTAAAATTATATATTATATATATTTTTTTTAAATGTTTTCAAAAT
1 TATATATTTTCAAAAATGTTTTAAAACTATATA-TATATATAATTTTTCAAAATGATTTCAAAAT
*
6313560 TATATAGTTTTCAAAAATGTTTTTAAAACTATATA-CTATATAATTTTTCAAAATGATTTCAAAA
1 TATATA-TTTTCAAAAATG-TTTTAAAACTATATATATATATAATTTTTCAAAATGATTTCAAAA
6313624 T
64 T
6313625 TATATA
1 TATATA
6313631 ATATATATGT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
65 37 0.60
66 11 0.18
67 14 0.23
ACGTcount: A:0.41, C:0.05, G:0.04, T:0.49
Consensus pattern (64 bp):
TATATATTTTCAAAAATGTTTTAAAACTATATATATATATAATTTTTCAAAATGATTTCAAAAT
Found at i:6313601 original size:101 final size:102
Alignment explanation
Indices: 6313468--6313768 Score: 348
Period size: 101 Copynumber: 2.9 Consensus size: 102
6313458 TATATATATA
*
6313468 AAAAATATTTTTCAAAAACCTATATAATATATATTTTCAAAAGTGTTTTAAAATTATATATTATA
1 AAAAATGTTTTT--AAAA-CTATATAATATATATTTTCAAAA-TGTTTTAAAATTATATATTATA
** *
6313533 TATATTTTTTTTAAATG-TTTTCAAAA-T-TATATAGTTTTC
62 TATATTTTTTCAAAATGTTTTTAAAAACTCTATATA-TTTTC
* *
6313572 AAAAATGTTTTTAAAACTATATACTATATAATTTTTCAAAATGATTTCAAAATTATATA--ATAT
1 AAAAATGTTTTTAAAACTATATAATATAT-A-TTTTCAAAATG-TTTTAAAATTATATATTATAT
*
6313635 ATATGTTTTCAAAATGTTTTTAAAAACTCTATATATTTTC
63 ATATTTTTTCAAAATGTTTTTAAAAACTCTATATATTTTC
* * *
6313675 -AAAATGTTTTAAAAACTATATAATATATATTTTCAAAAATATTTTAAAAACTATATATTATAT-
1 AAAAATGTTTTTAAAACTATATAATATATATTTTC-AAAATGTTTT-AAAATTATATATTATATA
* *
6313738 T-TATTTTCAAAATGTTTTTAAAAACTATATA
64 TATTTTTTCAAAATGTTTTTAAAAACTCTATA
6313769 ATATATAAAT
Statistics
Matches: 173, Mismatches: 14, Indels: 23
0.82 0.07 0.11
Matches are distributed among these distances:
100 8 0.05
101 73 0.42
102 42 0.24
103 33 0.19
104 17 0.10
ACGTcount: A:0.44, C:0.06, G:0.03, T:0.47
Consensus pattern (102 bp):
AAAAATGTTTTTAAAACTATATAATATATATTTTCAAAATGTTTTAAAATTATATATTATATATA
TTTTTTCAAAATGTTTTTAAAAACTCTATATATTTTC
Found at i:6313674 original size:30 final size:29
Alignment explanation
Indices: 6313632--6313732 Score: 112
Period size: 30 Copynumber: 3.2 Consensus size: 29
6313622 AATTATATAA
*
6313632 TATATATGTTTTCAAAATGTTTTTAAAAAC
1 TATATATATTTTCAAAATG-TTTTAAAAAC
*
6313662 TCTATATATTTTCAAAATGTTTTAAAAAC
1 TATATATATTTTCAAAATGTTTTAAAAAC
*
6313691 TATATAATATATATTTTCAAAAATATTTTAAAAAC
1 ----T-ATATATATTTTC-AAAATGTTTTAAAAAC
6313726 TATATAT
1 TATATAT
6313733 TATATTTATT
Statistics
Matches: 61, Mismatches: 4, Indels: 12
0.79 0.05 0.16
Matches are distributed among these distances:
29 10 0.16
30 23 0.38
31 1 0.02
33 1 0.02
34 11 0.18
35 15 0.25
ACGTcount: A:0.45, C:0.07, G:0.03, T:0.46
Consensus pattern (29 bp):
TATATATATTTTCAAAATGTTTTAAAAAC
Found at i:6313865 original size:38 final size:37
Alignment explanation
Indices: 6313675--6313866 Score: 95
Period size: 37 Copynumber: 5.2 Consensus size: 37
6313665 ATATATTTTC
* * * * *
6313675 AAAATGTTTTAAAAACTATATA--ATATATATTTTCA
1 AAAATATTTTCAAAACCATATACTATATATATTATGA
* * * * **
6313710 AAAATATTTTAAAAACTATATATTATATTTATT-TTC
1 AAAATATTTTCAAAACCATATACTATATATATTATGA
* * * * * * *
6313746 AAAATGTTTTTAAAAACTATATAATATATAAATGTTTTCA
1 AAAAT-ATTTTCAAAACCATATACTATAT--ATATTATGA
* * * * *
6313786 AACATGTTTTCAAAACCATATATTATATATATTTTTA
1 AAAATATTTTCAAAACCATATACTATATATATTATGA
*
6313823 AAAATATTTTC-AAACTATATACTATATATATATATGA
1 AAAATATTTTCAAAACCATATACTATATATAT-TATGA
6313860 TAAAATA
1 -AAAATA
6313867 AAAAAGAAAA
Statistics
Matches: 126, Mismatches: 23, Indels: 13
0.78 0.14 0.08
Matches are distributed among these distances:
35 21 0.17
36 24 0.19
37 48 0.38
38 6 0.05
39 22 0.17
40 5 0.04
ACGTcount: A:0.47, C:0.07, G:0.03, T:0.44
Consensus pattern (37 bp):
AAAATATTTTCAAAACCATATACTATATATATTATGA
Found at i:6313876 original size:5 final size:5
Alignment explanation
Indices: 6313868--6313897 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
6313858 GATAAAATAA
6313868 AAAAG AAAAG AAAAG AAAAAG AAAAG AAAA
1 AAAAG AAAAG AAAAG -AAAAG AAAAG AAAA
6313898 ATAACTCCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 19 0.79
6 5 0.21
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:6313887 original size:11 final size:11
Alignment explanation
Indices: 6313868--6313898 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
6313858 GATAAAATAA
6313868 AAAAG-AAAAG
1 AAAAGAAAAAG
6313878 AAAAGAAAAAG
1 AAAAGAAAAAG
6313889 AAAAGAAAAA
1 AAAAGAAAAA
6313899 TAACTCCGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 5 0.25
11 15 0.75
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (11 bp):
AAAAGAAAAAG
Found at i:6313888 original size:16 final size:16
Alignment explanation
Indices: 6313867--6313897 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
6313857 TGATAAAATA
6313867 AAAAAGAAAAGAAAAG
1 AAAAAGAAAAGAAAAG
6313883 AAAAAGAAAAGAAAA
1 AAAAAGAAAAGAAAA
6313898 ATAACTCCGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (16 bp):
AAAAAGAAAAGAAAAG
Found at i:6314098 original size:10 final size:10
Alignment explanation
Indices: 6314076--6314114 Score: 60
Period size: 10 Copynumber: 3.9 Consensus size: 10
6314066 AAAACCTATT
6314076 TTCATTTATG
1 TTCATTTATG
* *
6314086 TTCGTTTACG
1 TTCATTTATG
6314096 TTCATTTATG
1 TTCATTTATG
6314106 TTCATTTAT
1 TTCATTTAT
6314115 TGTGTTTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.18, C:0.13, G:0.10, T:0.59
Consensus pattern (10 bp):
TTCATTTATG
Found at i:6314101 original size:20 final size:20
Alignment explanation
Indices: 6314076--6314113 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
6314066 AAAACCTATT
*
6314076 TTCATTTATGTTCGTTTACG
1 TTCATTTATGTTCATTTACG
6314096 TTCATTTATGTTCATTTA
1 TTCATTTATGTTCATTTA
6314114 TTGTGTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (20 bp):
TTCATTTATGTTCATTTACG
Found at i:6316013 original size:25 final size:26
Alignment explanation
Indices: 6315978--6316026 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
6315968 GTAATTTTAA
6315978 AAAAATTAAAA-AGAAAATTATTTTTT
1 AAAAATTAAAATAGAAAA-TATTTTTT
*
6316004 AAAAA-TAAAATATAAAATATTTT
1 AAAAATTAAAATAGAAAATATTTT
6316027 CTAGAACAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 11 0.52
26 10 0.48
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (26 bp):
AAAAATTAAAATAGAAAATATTTTTT
Found at i:6316575 original size:2 final size:2
Alignment explanation
Indices: 6316568--6316602 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
6316558 TTATTATTAT
6316568 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
6316603 TAAAATTTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:6316752 original size:30 final size:30
Alignment explanation
Indices: 6316693--6316754 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 30
6316683 CAAGCCCAAA
* *
6316693 CCAAAATAAAACCACACCTCATTACAAAAC
1 CCAAAATAAAACCACACCTAAATACAAAAC
6316723 CCAAAATAAAACC-CAACCTAAAT-CTAAAAC
1 CCAAAATAAAACCAC-ACCTAAATAC-AAAAC
6316753 CC
1 CC
6316755 GACCCGGAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
29 2 0.07
30 26 0.93
ACGTcount: A:0.53, C:0.34, G:0.00, T:0.13
Consensus pattern (30 bp):
CCAAAATAAAACCACACCTAAATACAAAAC
Found at i:6320538 original size:29 final size:30
Alignment explanation
Indices: 6320486--6320690 Score: 103
Period size: 30 Copynumber: 6.3 Consensus size: 30
6320476 AAAATTATAT
* * *
6320486 ATTATATATTTTTTTAAAAATGTTTTCAAA
1 ATTATATATGTTTTCAAAAATGTTTTAAAA
6320516 ATTATATA-GTTTTCAAAAATGTTTTAAAAA
1 ATTATATATGTTTTCAAAAATGTTTT-AAAA
* *
6320546 CTATATACTATATAATTTTTC-AAAATGATTTCAAAATTA
1 --AT-TA-TATAT--GTTTTCAAAAATG-TTT-TAAA--A
*
6320585 TATAATATATATGATTTC-AAAATGTTTTTAAAA
1 -AT--TATATATGTTTTCAAAAATG-TTTTAAAA
* *
6320618 ACTATATATATTTTC-AAAATGTTTTAAAAA
1 ATTATATATGTTTTCAAAAATGTTTT-AAAA
* *
6320648 CTATATAATATATATTTTCAAAAATATTTTAAAA
1 --AT-T-ATATATGTTTTCAAAAATGTTTTAAAA
*
6320682 ACTATATAT
1 ATTATATAT
6320691 TATATTTATT
Statistics
Matches: 141, Mismatches: 15, Indels: 38
0.73 0.08 0.20
Matches are distributed among these distances:
29 19 0.13
30 38 0.27
31 1 0.01
32 5 0.04
33 4 0.03
34 20 0.14
35 12 0.09
36 19 0.13
37 11 0.08
38 8 0.06
39 4 0.03
ACGTcount: A:0.45, C:0.06, G:0.03, T:0.45
Consensus pattern (30 bp):
ATTATATATGTTTTCAAAAATGTTTTAAAA
Found at i:6320539 original size:65 final size:64
Alignment explanation
Indices: 6320454--6320588 Score: 191
Period size: 65 Copynumber: 2.1 Consensus size: 64
6320444 ACCTATATAA
* * * * *
6320454 TATATATTTTCAAAAGTGTTTT-AAAATTATATATTATATATTTTTTTAAAAATGTTTTCAAAAT
1 TATATATTTTCAAAAATGTTTTAAAAACTATATACTATATA-ATTTTTAAAAATGATTTCAAAAT
*
6320518 TATATAGTTTTCAAAAATGTTTTAAAAACTATATACTATATAATTTTTCAAAATGATTTCAAAAT
1 TATATA-TTTTCAAAAATGTTTTAAAAACTATATACTATATAATTTTTAAAAATGATTTCAAAAT
6320583 TATATA
1 TATATA
6320589 ATATATATGA
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
64 6 0.10
65 41 0.65
66 16 0.25
ACGTcount: A:0.43, C:0.05, G:0.04, T:0.47
Consensus pattern (64 bp):
TATATATTTTCAAAAATGTTTTAAAAACTATATACTATATAATTTTTAAAAATGATTTCAAAAT
Found at i:6320566 original size:102 final size:99
Alignment explanation
Indices: 6320435--6320726 Score: 367
Period size: 102 Copynumber: 2.9 Consensus size: 99
6320425 TAAAAAATAT
*
6320435 TTTTCAAAAACCTATATAATATATATTTTCAAAAGTGTTTTAAAATTATATATTATATATTTTTT
1 TTTT-AAAAA-CTATATAATATATATTTTCAAAA-TGTTTTAAAATTATATATTATATATTATTT
* *
6320500 TAAAAATGTTTTCAAAA-T-TATATAGTTTTCAAAAATG
63 TCAAAATGTTTTAAAAACTATATATA-TTTTC-AAAATG
* * * *
6320537 TTTTAAAAACTATATACTATATAATTTTTCAAAATGATTTCAAAATTATATAATATATATGA-TT
1 TTTTAAAAACTATATAATATAT-A-TTTTCAAAATG-TTTTAAAATTATATATTATATATTATTT
6320601 TCAAAATGTTTTTAAAAACTATATATATTTTCAAAATG
63 TCAAAATG-TTTTAAAAACTATATATATTTTCAAAATG
* *
6320639 TTTTAAAAACTATATAATATATATTTTCAAAAATATTTTAAAAACTATATATTATAT-TTATTTT
1 TTTTAAAAACTATATAATATATATTTTC-AAAATGTTTT-AAAATTATATATTATATATTATTTT
6320703 CAAAATGTTTTTAAAAACTATATA
64 CAAAATG-TTTTAAAAACTATATA
6320727 ATATATAAAT
Statistics
Matches: 168, Mismatches: 13, Indels: 19
0.84 0.06 0.09
Matches are distributed among these distances:
100 22 0.13
101 65 0.39
102 69 0.41
103 6 0.04
104 6 0.04
ACGTcount: A:0.45, C:0.06, G:0.03, T:0.46
Consensus pattern (99 bp):
TTTTAAAAACTATATAATATATATTTTCAAAATGTTTTAAAATTATATATTATATATTATTTTCA
AAATGTTTTAAAAACTATATATATTTTCAAAATG
Found at i:6320570 original size:37 final size:35
Alignment explanation
Indices: 6320518--6320808 Score: 276
Period size: 36 Copynumber: 8.2 Consensus size: 35
6320508 TTTTCAAAAT
* *
6320518 TATATAGTTTTCAAAAATGTTTTAAAAACTATATAC
1 TATATATTTTTC-AAAATGTTTTAAAAACTATATAA
* * *
6320554 TATATAATTTTTCAAAATGATTTCAAAATTATATAA
1 TATAT-ATTTTTCAAAATGTTTTAAAAACTATATAA
*
6320590 TATATATGATTTCAAAATGTTTTTAAAAAC----T-A
1 TATATAT-TTTTCAAAATG-TTTTAAAAACTATATAA
6320622 TATATA-TTTTCAAAATGTTTTAAAAACTATATAA
1 TATATATTTTTCAAAATGTTTTAAAAACTATATAA
* *
6320656 TATATA-TTTTCAAAAATATTTTAAAAACTATATAT
1 TATATATTTTTC-AAAATGTTTTAAAAACTATATAA
*
6320691 TATATTTATTTTCAAAATGTTTTTAAAAACTATATAA
1 TATATAT-TTTTCAAAATG-TTTTAAAAACTATATAA
* *
6320728 TATATAAATGTTTTCAAACATGTTTTCAAAACCATATATTA
1 TATAT--AT-TTTTCAAA-ATGTTTT-AAAAAC-TATATAA
* * *
6320769 TATATATTTTT-AAAATATTTT-CAAACTATATAC
1 TATATATTTTTCAAAATGTTTTAAAAACTATATAA
6320802 TATATAT
1 TATATAT
6320809 ATATATATAT
Statistics
Matches: 214, Mismatches: 24, Indels: 37
0.78 0.09 0.13
Matches are distributed among these distances:
29 10 0.05
30 10 0.05
32 7 0.03
33 14 0.07
34 15 0.07
35 28 0.13
36 50 0.23
37 42 0.20
38 4 0.02
39 15 0.07
40 8 0.04
41 11 0.05
ACGTcount: A:0.45, C:0.07, G:0.03, T:0.45
Consensus pattern (35 bp):
TATATATTTTTCAAAATGTTTTAAAAACTATATAA
Found at i:6320637 original size:66 final size:65
Alignment explanation
Indices: 6320552--6320733 Score: 208
Period size: 66 Copynumber: 2.7 Consensus size: 65
6320542 AAAACTATAT
* * *
6320552 ACTATATA-ATTTTTCAAAATGATTTCAAAATTATATAATATATATGATTTC-AAAATGTTTTTA
1 ACTATATATATTTTTCAAAATGATTTAAAAACTATATAATATATAT--TTTCAAAAAT-ATTTTA
6320615 AAA
63 AAA
*
6320618 ACTATATATA-TTTTCAAAATGTTTTAAAAACTATATAATATATATTTTCAAAAATATTTTAAAA
1 ACTATATATATTTTTCAAAATGATTTAAAAACTATATAATATATATTTTCAAAAATATTTTAAAA
*
6320682 ACTATATATTATATTTATTTTCAAAATGTTTTTAAAAACTATATAATATATA
1 AC--TATA-TATA--T-TTTTCAAAATG-ATTTAAAAACTATATAATATATA
6320734 AATGTTTTCA
Statistics
Matches: 102, Mismatches: 4, Indels: 14
0.85 0.03 0.12
Matches are distributed among these distances:
64 14 0.14
65 5 0.05
66 44 0.43
67 5 0.05
71 11 0.11
72 23 0.23
ACGTcount: A:0.46, C:0.06, G:0.03, T:0.45
Consensus pattern (65 bp):
ACTATATATATTTTTCAAAATGATTTAAAAACTATATAATATATATTTTCAAAAATATTTTAAAA
Found at i:6321041 original size:10 final size:10
Alignment explanation
Indices: 6321019--6321057 Score: 60
Period size: 10 Copynumber: 3.9 Consensus size: 10
6321009 AAAAACTATT
6321019 TTCATTTATG
1 TTCATTTATG
* *
6321029 TTCGTTTACG
1 TTCATTTATG
6321039 TTCATTTATG
1 TTCATTTATG
6321049 TTCATTTAT
1 TTCATTTAT
6321058 TGTGTTTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.18, C:0.13, G:0.10, T:0.59
Consensus pattern (10 bp):
TTCATTTATG
Found at i:6321044 original size:20 final size:20
Alignment explanation
Indices: 6321019--6321056 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
6321009 AAAAACTATT
*
6321019 TTCATTTATGTTCGTTTACG
1 TTCATTTATGTTCATTTACG
6321039 TTCATTTATGTTCATTTA
1 TTCATTTATGTTCATTTA
6321057 TTGTGTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (20 bp):
TTCATTTATGTTCATTTACG
Found at i:6322957 original size:25 final size:26
Alignment explanation
Indices: 6322922--6322970 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
6322912 GTAATTTTAA
6322922 AAAAATTAAAA-AGAAAATTATTTTTT
1 AAAAATTAAAATAGAAAA-TATTTTTT
*
6322948 AAAAA-TAAAATATAAAATATTTT
1 AAAAATTAAAATAGAAAATATTTT
6322971 CTAGAACAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 11 0.52
26 10 0.48
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (26 bp):
AAAAATTAAAATAGAAAATATTTTTT
Found at i:6323510 original size:2 final size:2
Alignment explanation
Indices: 6323503--6323539 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
6323493 ATTCGATTAT
6323503 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
6323540 TAAAATTTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:6323689 original size:30 final size:30
Alignment explanation
Indices: 6323630--6323691 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 30
6323620 CAAGCCCAAA
* *
6323630 CCAAAATAAAACCACACCTCATTACAAAAC
1 CCAAAATAAAACCACACCTAAATACAAAAC
6323660 CCAAAATAAAACCTA-ACCTAAAT-CTAAAAC
1 CCAAAATAAAACC-ACACCTAAATAC-AAAAC
6323690 CC
1 CC
6323692 GACCCGGAGC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
29 1 0.04
30 26 0.93
31 1 0.04
ACGTcount: A:0.53, C:0.32, G:0.00, T:0.15
Consensus pattern (30 bp):
CCAAAATAAAACCACACCTAAATACAAAAC
Found at i:6329234 original size:36 final size:37
Alignment explanation
Indices: 6329213--6329754 Score: 327
Period size: 36 Copynumber: 14.6 Consensus size: 37
6329203 TCATCTCGCG
6329213 TGAGATAGTTTCACTCGAAACAGAAAATTTTATCTCACT
1 TGAGATAGTTTCACTCGAAAC--AAAATTTTATCTCACT
* * ** * *
6329252 TGAGATTGTTT--TTTAAAACAAGA-TTCATCTCACT
1 TGAGATAGTTTCACTCGAAACAAAATTTTATCTCACT
6329286 TGAGATAGTTTCACTCGAAACAGAAATTTTATCTCACT
1 TGAGATAGTTTCACTCGAAACA-AAATTTTATCTCACT
* ** ** *
6329324 TGAGATTGTTTTTCTTAAAAC-AAATTTTATCTCGCT
1 TGAGATAGTTTCACTCGAAACAAAATTTTATCTCACT
6329360 TGAGATAGTTTCACTCGAAACATAAGA-TTTATCTCACT
1 TGAGATAGTTTCACTCGAAACA-AA-ATTTTATCTCACT
** ** *
6329398 TGAGATCA-TTTTTCTTAAAAC-AAATTTTATCTCGCT
1 TGAGAT-AGTTTCACTCGAAACAAAATTTTATCTCACT
** *
6329434 TGAGATAGTTTCACTAAAAACATAAAATTTATCTCACT
1 TGAGATAGTTTCACTCGAAACA-AAATTTTATCTCACT
* * ** ** * *
6329472 TGATATTGTTTTTCTTAAAACAAGA-TTCATCTCACT
1 TGAGATAGTTTCACTCGAAACAAAATTTTATCTCACT
* * *
6329508 TTAGGTAGTTTCACTCGAAACAGAAATTTTATCTTACT
1 TGAGATAGTTTCACTCGAAACA-AAATTTTATCTCACT
* * ** * * * *
6329546 TAAGATTGTTTTTCT-TAAAGCAAGA-TTCATCTCGCT
1 TGAGATAGTTTCACTCGAAA-CAAAATTTTATCTCACT
* *
6329582 TAAGATAATTTCACTCGAAACAGAAATTTTATCTCACT
1 TGAGATAGTTTCACTCGAAACA-AAATTTTATCTCACT
** ** * * *
6329620 TGAGATTA-TTTTTCTTAAAACAAGA-TTCATCTCGCT
1 TGAGA-TAGTTTCACTCGAAACAAAATTTTATCTCACT
* *
6329656 TGAGATATTTTTCACTCGAAATAAAATTTTTATCTCACT
1 TGAGATA-GTTTCACTCGAAACAAAA-TTTTATCTCACT
* ** ** * * *
6329695 TGAGATTGTTTTTCTTAAAAC-AAACTTTGTCTCGCT
1 TGAGATAGTTTCACTCGAAACAAAATTTTATCTCACT
* *
6329731 TGAGACAGTTTTTACTCGAAACAA
1 TGAGATAG-TTTCACTCGAAACAA
6329755 GGAATTTCAT
Statistics
Matches: 377, Mismatches: 101, Indels: 51
0.71 0.19 0.10
Matches are distributed among these distances:
34 20 0.05
35 7 0.02
36 138 0.37
37 47 0.12
38 136 0.36
39 29 0.08
ACGTcount: A:0.33, C:0.17, G:0.11, T:0.39
Consensus pattern (37 bp):
TGAGATAGTTTCACTCGAAACAAAATTTTATCTCACT
Found at i:6329240 original size:74 final size:74
Alignment explanation
Indices: 6329133--6329834 Score: 814
Period size: 74 Copynumber: 9.5 Consensus size: 74
6329123 CAAAAAATTG
* * * * *
6329133 TCTCGCTTGAGACAGTTTCACT-TAATACA-AAAATTTATCTCACTTCAAATTGATTTTCTTAAA
1 TCTCGCTTGAGATAGTTTCACTCGAA-ACAGAAAATTTATCTCACTTGAGATTGTTTTTCTTAAA
*
6329196 ACAATATTCA
65 ACAAGATTCA
*
6329206 TCTCGCGTGAGATAGTTTCACTCGAAACAGAAAATTTTATCTCACTTGAGATTG-TTTT-TTAAA
1 TCTCGCTTGAGATAGTTTCACTCGAAACAGAAAA-TTTATCTCACTTGAGATTGTTTTTCTTAAA
6329269 ACAAGATTCA
65 ACAAGATTCA
* *
6329279 TCTCACTTGAGATAGTTTCACTCGAAACAGAAATTTTATCTCACTTGAGATTGTTTTTCTTAAAA
1 TCTCGCTTGAGATAGTTTCACTCGAAACAGAAAATTTATCTCACTTGAGATTGTTTTTCTTAAAA
*
6329344 CAA-ATTTTA
66 CAAGA-TTCA
* * **
6329353 TCTCGCTTGAGATAGTTTCACTCGAAACATAAGATTTATCTCACTTGAGATCATTTTTCTTAAAA
1 TCTCGCTTGAGATAGTTTCACTCGAAACAGAAAATTTATCTCACTTGAGATTGTTTTTCTTAAAA
*
6329418 CAA-ATTTTA
66 CAAGA-TTCA
** * *
6329427 TCTCGCTTGAGATAGTTTCACTAAAAACATAAAATTTATCTCACTTGATATTGTTTTTCTTAAAA
1 TCTCGCTTGAGATAGTTTCACTCGAAACAGAAAATTTATCTCACTTGAGATTGTTTTTCTTAAAA
6329492 CAAGATTCA
66 CAAGATTCA
* * * * * * *
6329501 TCTCACTTTAGGTAGTTTCACTCGAAACAGAAATTTTATCTTACTTAAGATTGTTTTTCTTAAAG
1 TCTCGCTTGAGATAGTTTCACTCGAAACAGAAAATTTATCTCACTTGAGATTGTTTTTCTTAAAA
6329566 CAAGATTCA
66 CAAGATTCA
* * * *
6329575 TCTCGCTTAAGATAATTTCACTCGAAACAGAAATTTTATCTCACTTGAGATTATTTTTCTTAAAA
1 TCTCGCTTGAGATAGTTTCACTCGAAACAGAAAATTTATCTCACTTGAGATTGTTTTTCTTAAAA
6329640 CAAGATTCA
66 CAAGATTCA
* * *
6329649 TCTCGCTTGAGATATTTTTCACTCGAAATA-AAATTTTTATCTCACTTGAGATTGTTTTTCTTAA
1 TCTCGCTTGAGATA-GTTTCACTCGAAACAGAAA-ATTTATCTCACTTGAGATTGTTTTTCTTAA
**
6329713 AACAA-ACTTTG
64 AACAAGA-TTCA
* * * * **
6329724 TCTCGCTTGAGACAGTTTTTACTCGAAACA-AGGAATTTCATTTCACTCAAGATTG-TTTT-TTA
1 TCTCGCTTGAGATAG-TTTCACTCGAAACAGA-AAATTT-ATCTCACTTGAGATTGTTTTTCTTA
6329786 AAACAAGATTCA
63 AAACAAGATTCA
* * * * * *
6329798 TCTCACTTGAGAAAGTTTCCCTTGAAATATAAAATTT
1 TCTCGCTTGAGATAGTTTCACTCGAAACAGAAAATTT
6329835 GAAATTGTTT
Statistics
Matches: 548, Mismatches: 66, Indels: 30
0.85 0.10 0.05
Matches are distributed among these distances:
72 19 0.03
73 88 0.16
74 326 0.59
75 101 0.18
76 14 0.03
ACGTcount: A:0.33, C:0.17, G:0.11, T:0.39
Consensus pattern (74 bp):
TCTCGCTTGAGATAGTTTCACTCGAAACAGAAAATTTATCTCACTTGAGATTGTTTTTCTTAAAA
CAAGATTCA
Found at i:6330223 original size:59 final size:59
Alignment explanation
Indices: 6330105--6330224 Score: 161
Period size: 59 Copynumber: 2.0 Consensus size: 59
6330095 ACTTGTTCAA
* * ** *
6330105 CCTTTGCTCGATTCACGATATTTCGAATCAGCGATGCCTCACTCGAGGGATTAATATTT
1 CCTTTGCTCGATTCACGACATTTCGAATCACCGATGCCTCACTCGAGGGACCAACATTT
* *
6330164 CCTTTGCTCGATTCACGGCATTTTGAATCACCGATGCCTCACAT-GAGGGACCAACATTT
1 CCTTTGCTCGATTCACGACATTTCGAATCACCGATGCCTCAC-TCGAGGGACCAACATTT
6330223 CC
1 CC
6330225 AATAGAGAAT
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
59 52 0.98
60 1 0.02
ACGTcount: A:0.23, C:0.28, G:0.18, T:0.31
Consensus pattern (59 bp):
CCTTTGCTCGATTCACGACATTTCGAATCACCGATGCCTCACTCGAGGGACCAACATTT
Found at i:6330328 original size:92 final size:92
Alignment explanation
Indices: 6330164--6330416 Score: 330
Period size: 92 Copynumber: 2.8 Consensus size: 92
6330154 ATTAATATTT
* * * *
6330164 CCTTTGCTCGATTCACGGCATTTTGAATCACCGATGCCTCACATGAGGGACCAACATTTCCAATA
1 CCTTTGCTCGATTCACGGCATTTTGAATCAGCAACGCCTCACATGAGGGACCAACATTTCCAGTA
* * *
6330229 GAGAATTTTTGA-GAATAAATTTTTCAA
66 GA-AAATTTTAATGAATAAATTGTTCAA
* *
6330256 CCTTGGCTCGATTCACGGCATTTTGAGTCAGCAACGCCTCACATGAGGGACCAACATTTCCAGTA
1 CCTTTGCTCGATTCACGGCATTTTGAATCAGCAACGCCTCACATGAGGGACCAACATTTCCAGTA
*
6330321 GAAAATTTTAATGAATAACTTGTTCAA
66 GAAAATTTTAATGAATAAATTGTTCAA
** ** **
6330348 CCTTTGCTCGATTCACAACATTTCAAATCAGCAACGCCTCAC-TCGAGGGACCAATGTTTCCAGT
1 CCTTTGCTCGATTCACGGCATTTTGAATCAGCAACGCCTCACAT-GAGGGACCAACATTTCCAGT
6330412 AGAAA
65 AGAAA
6330417 GATCATGATA
Statistics
Matches: 141, Mismatches: 18, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
91 8 0.06
92 133 0.94
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.28
Consensus pattern (92 bp):
CCTTTGCTCGATTCACGGCATTTTGAATCAGCAACGCCTCACATGAGGGACCAACATTTCCAGTA
GAAAATTTTAATGAATAAATTGTTCAA
Found at i:6339246 original size:2 final size:2
Alignment explanation
Indices: 6339239--6339270 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
6339229 GTTTATTTAA
6339239 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6339271 GTGTGTGTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6339477 original size:2 final size:2
Alignment explanation
Indices: 6339470--6339511 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
6339460 TGGTCAGTTA
6339470 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6339512 GAAGACTTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6340414 original size:28 final size:28
Alignment explanation
Indices: 6340360--6340414 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 28
6340350 GTTGAGGTTA
*
6340360 AAATTAATTATATTAAATTTATAAAAAG
1 AAATTAATTATAATAAATTTATAAAAAG
6340388 AAATTAATTATAAAATAAA-TTATAAAA
1 AAATTAATTAT--AATAAATTTATAAAA
6340415 TATTATAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
28 11 0.46
29 8 0.33
30 5 0.21
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (28 bp):
AAATTAATTATAATAAATTTATAAAAAG
Found at i:6340421 original size:10 final size:11
Alignment explanation
Indices: 6340392--6340424 Score: 50
Period size: 12 Copynumber: 3.0 Consensus size: 11
6340382 AAAAAGAAAT
6340392 TAATTATAAAA
1 TAATTATAAAA
6340403 TAAATTATAAAA
1 T-AATTATAAAA
6340415 T-ATTATAAAA
1 TAATTATAAAA
6340425 GAATATTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 9 0.43
11 1 0.05
12 11 0.52
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (11 bp):
TAATTATAAAA
Found at i:6351688 original size:21 final size:21
Alignment explanation
Indices: 6351648--6351688 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
6351638 TTCACGGTGC
* *
6351648 TGACATGGTAGTCCACGATGT
1 TGACATGGCAGCCCACGATGT
*
6351669 TGACATGGCAGCCCATGATG
1 TGACATGGCAGCCCACGATG
6351689 GTAGATTAAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.24
Consensus pattern (21 bp):
TGACATGGCAGCCCACGATGT
Found at i:6357375 original size:32 final size:32
Alignment explanation
Indices: 6357324--6357435 Score: 90
Period size: 32 Copynumber: 3.6 Consensus size: 32
6357314 TTATAAAAGA
*
6357324 ATTTTTTTAATAATTTAAATTATTAAATGGTTGT
1 ATTTATTTAA-AA-TTAAATTATTAAATGGTTGT
* *
6357358 ATTTATTTAAAATTAAA-TATAAAAT--AT-T
1 ATTTATTTAAAATTAAATTATTAAATGGTTGT
* * * **
6357386 A-TGACTCTCATTTTAAATTATTAAATGGTTGT
1 ATTTA-TTTAAAATTAAATTATTAAATGGTTGT
6357418 ATTTATTTAAAATTAAAT
1 ATTTATTTAAAATTAAAT
6357436 ATAAAATATT
Statistics
Matches: 57, Mismatches: 15, Indels: 14
0.66 0.17 0.16
Matches are distributed among these distances:
27 2 0.04
28 10 0.18
29 8 0.14
31 8 0.14
32 16 0.28
33 4 0.07
34 9 0.16
ACGTcount: A:0.41, C:0.03, G:0.06, T:0.50
Consensus pattern (32 bp):
ATTTATTTAAAATTAAATTATTAAATGGTTGT
Found at i:6357379 original size:60 final size:59
Alignment explanation
Indices: 6357337--6357466 Score: 206
Period size: 60 Copynumber: 2.2 Consensus size: 59
6357327 TTTTTAATAA
* *
6357337 TTTAAATTATTAAATGGTTGTATTTATTTAAAATTAAATATAAAATATTATGACTCTCAT
1 TTTAAATTATTAAATGGTTGTATTTATTTAAAATTAAATATAAAAAATTAT-ACTCTAAT
* *
6357397 TTTAAATTATTAAATGGTTGTATTTATTTAAAATTAAATATAAAATATTATGACTCTCAT
1 TTTAAATTATTAAATGGTTGTATTTATTTAAAATTAAATATAAAAAATTAT-ACTCTAAT
6357457 TTTAAATTAT
1 TTTAAATTAT
6357467 CACCTTCATT
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 70 1.00
ACGTcount: A:0.42, C:0.05, G:0.06, T:0.48
Consensus pattern (59 bp):
TTTAAATTATTAAATGGTTGTATTTATTTAAAATTAAATATAAAAAATTATACTCTAAT
Found at i:6357402 original size:28 final size:28
Alignment explanation
Indices: 6357370--6357463 Score: 73
Period size: 28 Copynumber: 3.2 Consensus size: 28
6357360 TTATTTAAAA
6357370 TTAAATATAAAATATTATGACTCTCATT
1 TTAAATATAAAATATTATGACTCTCATT
* * * * * **
6357398 TTAAATTATTAAATGGTTGTATTTA-TTTAAAA
1 TTAAA-TATAAAAT--AT-TA-TGACTCTCATT
6357430 TTAAATATAAAATATTATGACTCTCATT
1 TTAAATATAAAATATTATGACTCTCATT
6357458 TTAAAT
1 TTAAAT
6357464 TATCACCTTC
Statistics
Matches: 46, Mismatches: 14, Indels: 12
0.64 0.19 0.17
Matches are distributed among these distances:
27 2 0.04
28 16 0.35
29 8 0.17
31 8 0.17
32 10 0.22
33 2 0.04
ACGTcount: A:0.43, C:0.06, G:0.05, T:0.46
Consensus pattern (28 bp):
TTAAATATAAAATATTATGACTCTCATT
Found at i:6357405 original size:33 final size:33
Alignment explanation
Indices: 6357362--6357465 Score: 105
Period size: 33 Copynumber: 3.3 Consensus size: 33
6357352 GGTTGTATTT
6357362 ATTTAAAATTAAATATAAAATATTATGACTCTC
1 ATTTAAAATTAAATATAAAATATTATGACTCTC
* ** *
6357395 ATTTTAAATT--AT-T-AAATGGT-TGTA-T-TT
1 ATTTAAAATTAAATATAAAATATTATG-ACTCTC
6357422 ATTTAAAATTAAATATAAAATATTATGACTCTC
1 ATTTAAAATTAAATATAAAATATTATGACTCTC
*
6357455 ATTTTAAATTA
1 ATTTAAAATTA
6357466 TCACCTTCAT
Statistics
Matches: 54, Mismatches: 9, Indels: 16
0.68 0.11 0.20
Matches are distributed among these distances:
27 10 0.19
28 3 0.06
29 8 0.15
30 2 0.04
31 8 0.15
32 3 0.06
33 20 0.37
ACGTcount: A:0.44, C:0.06, G:0.05, T:0.45
Consensus pattern (33 bp):
ATTTAAAATTAAATATAAAATATTATGACTCTC
Found at i:6357430 original size:27 final size:27
Alignment explanation
Indices: 6357336--6357432 Score: 81
Period size: 27 Copynumber: 3.4 Consensus size: 27
6357326 TTTTTTAATA
6357336 ATTT-AAATTATTAAATGGTTGTATTT
1 ATTTAAAATTATTAAATGGTTGTATTT
* * *
6357362 ATTTAAAATTAAATATAAAAT-ATTATGACTCTC
1 ATTTAAAATT--AT-T-AAATGGTTGT-A-T-TT
*
6357395 ATTTTAAATTATTAAATGGTTGTATTT
1 ATTTAAAATTATTAAATGGTTGTATTT
6357422 ATTTAAAATTA
1 ATTTAAAATTA
6357433 AATATAAAAT
Statistics
Matches: 54, Mismatches: 8, Indels: 17
0.68 0.10 0.22
Matches are distributed among these distances:
26 4 0.07
27 16 0.30
28 1 0.02
29 7 0.13
30 8 0.15
31 7 0.13
32 1 0.02
33 10 0.19
ACGTcount: A:0.41, C:0.03, G:0.07, T:0.48
Consensus pattern (27 bp):
ATTTAAAATTATTAAATGGTTGTATTT
Found at i:6357648 original size:28 final size:28
Alignment explanation
Indices: 6357595--6357648 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 28
6357585 AAAATAAAAA
* *
6357595 TTAAAATTTAAGAATAAGCTACAATATT
1 TTAAAATTTAAAAATAAGCTAAAATATT
*
6357623 TTAAAA-TTAAAAATTAGCTTAAAATA
1 TTAAAATTTAAAAATAAGC-TAAAATA
6357649 AAAAGATAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 10 0.45
28 12 0.55
ACGTcount: A:0.54, C:0.06, G:0.06, T:0.35
Consensus pattern (28 bp):
TTAAAATTTAAAAATAAGCTAAAATATT
Found at i:6361077 original size:20 final size:19
Alignment explanation
Indices: 6361047--6361086 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
6361037 TGAGCGCTTG
*
6361047 TGTTCTTTATTTTCTTTAT
1 TGTTCTTTATTTTCTATAT
6361066 TGTTCGTTTATTTTCTATAT
1 TGTTC-TTTATTTTCTATAT
6361086 T
1 T
6361087 ACTTGGTATG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.12, C:0.10, G:0.07, T:0.70
Consensus pattern (19 bp):
TGTTCTTTATTTTCTATAT
Found at i:6361585 original size:17 final size:17
Alignment explanation
Indices: 6361563--6361596 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
6361553 CCATGCCCAT
*
6361563 CCCTATATGTATATATA
1 CCCTATATATATATATA
6361580 CCCTATATATATATATA
1 CCCTATATATATATATA
6361597 TATATATAGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.18, G:0.03, T:0.41
Consensus pattern (17 bp):
CCCTATATATATATATA
Found at i:6362128 original size:17 final size:19
Alignment explanation
Indices: 6362075--6362144 Score: 65
Period size: 18 Copynumber: 3.6 Consensus size: 19
6362065 AACCCGACCC
*
6362075 AAAATAATATATTT-ATAA
1 AAAATAATATATTTAATTA
*
6362093 AAAATATTACTTTTATTTAA-TA
1 AAAATA--A--TATATTTAATTA
6362115 AAAATAA-ATATTTAATTA
1 AAAATAATATATTTAATTA
6362133 AAAATAATATAT
1 AAAATAATATAT
6362145 ATATGAGTAT
Statistics
Matches: 42, Mismatches: 3, Indels: 13
0.72 0.05 0.22
Matches are distributed among these distances:
17 7 0.17
18 15 0.36
19 4 0.10
20 2 0.05
22 13 0.31
23 1 0.02
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.41
Consensus pattern (19 bp):
AAAATAATATATTTAATTA
Found at i:6362128 original size:21 final size:21
Alignment explanation
Indices: 6362104--6362146 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
6362094 AAATATTACT
*
6362104 TTTATTTAATAAA-AATAAATA
1 TTTAATTAA-AAATAATAAATA
*
6362125 TTTAATTAAAAATAATATATA
1 TTTAATTAAAAATAATAAATA
6362146 T
1 T
6362147 ATGAGTATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 3 0.16
21 16 0.84
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (21 bp):
TTTAATTAAAAATAATAAATA
Found at i:6363284 original size:16 final size:15
Alignment explanation
Indices: 6363248--6363289 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
6363238 ATTATTTTAA
6363248 ATATTTTAAAAAATT
1 ATATTTTAAAAAATT
* *
6363263 AAATTTTATAAAA-T
1 ATATTTTAAAAAATT
6363277 ATATATTTAAAAA
1 ATAT-TTTAAAAA
6363290 TGGTTTGATT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
14 4 0.18
15 18 0.82
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (15 bp):
ATATTTTAAAAAATT
Found at i:6363472 original size:26 final size:26
Alignment explanation
Indices: 6363441--6363490 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
6363431 TAATTTTATT
* * *
6363441 TATTTATTTAAAATGTATTTTAAAAA
1 TATTTATATAAAAAGAATTTTAAAAA
6363467 TATTTATATAAAAAGAATTTTAAA
1 TATTTATATAAAAAGAATTTTAAA
6363491 TTTTGTCAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (26 bp):
TATTTATATAAAAAGAATTTTAAAAA
Found at i:6363550 original size:6 final size:6
Alignment explanation
Indices: 6363539--6363565 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
6363529 AAATATTTTC
6363539 AAATAA AAATAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAATAA AAATAA AAA
6363566 ACTAATATGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:6363563 original size:41 final size:41
Alignment explanation
Indices: 6363487--6363564 Score: 97
Period size: 41 Copynumber: 1.9 Consensus size: 41
6363477 AAAAGAATTT
** *
6363487 TAAATTTTGTCAAATAAATGTAAAAAAGAACATAAAACAAA
1 TAAATTTTGTCAAATAAAAATAAAAAAGAAAATAAAACAAA
6363528 TAAATATTT-TCAAATAAAAATAAAAATA-AAAATAAAA
1 TAAAT-TTTGTCAAATAAAAATAAAAA-AGAAAATAAAA
6363565 AACTAATATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
41 28 0.88
42 4 0.12
ACGTcount: A:0.65, C:0.05, G:0.04, T:0.26
Consensus pattern (41 bp):
TAAATTTTGTCAAATAAAAATAAAAAAGAAAATAAAACAAA
Found at i:6366948 original size:76 final size:75
Alignment explanation
Indices: 6366799--6366947 Score: 264
Period size: 74 Copynumber: 2.0 Consensus size: 75
6366789 CTTTAAAATA
6366799 TATACTATCACTTGTAAGCACCCTAGATTAATAAAAAAAATCGGTTAATTAACTATTAATCAAAT
1 TATACTATCACTTGTAAGCACCCTAGATTAAT-AAAAAAATCGGTTAATTAACTATTAATCAAAT
6366864 ATTGAAAAAAC
65 ATTGAAAAAAC
* *
6366875 TATATTATCACTTGTAAGCACCCTAGATTAAT-AAAATATCGGTTAATTAACTATTAATCAAATA
1 TATACTATCACTTGTAAGCACCCTAGATTAATAAAAAAATCGGTTAATTAACTATTAATCAAATA
6366939 TTGAAAAAA
66 TTGAAAAAA
6366948 ATTAGCTATT
Statistics
Matches: 71, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
74 40 0.56
76 31 0.44
ACGTcount: A:0.46, C:0.13, G:0.08, T:0.32
Consensus pattern (75 bp):
TATACTATCACTTGTAAGCACCCTAGATTAATAAAAAAATCGGTTAATTAACTATTAATCAAATA
TTGAAAAAAC
Found at i:6369789 original size:23 final size:23
Alignment explanation
Indices: 6369759--6369822 Score: 101
Period size: 23 Copynumber: 2.8 Consensus size: 23
6369749 CAGCTCGTAT
6369759 AATTGCACCGAAGTGCCACATAG
1 AATTGCACCGAAGTGCCACATAG
* *
6369782 AATTGCACCGGAGTGCCGCATAG
1 AATTGCACCGAAGTGCCACATAG
*
6369805 AATTGCACCGTAGTGCCA
1 AATTGCACCGAAGTGCCA
6369823 TATAATAATG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.30, C:0.27, G:0.25, T:0.19
Consensus pattern (23 bp):
AATTGCACCGAAGTGCCACATAG
Found at i:6379832 original size:20 final size:20
Alignment explanation
Indices: 6379807--6379844 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
6379797 TTTGGTTCAC
*
6379807 GGAATGTAATATTACCAGTA
1 GGAATGTAAGATTACCAGTA
6379827 GGAATGTAAGATTACCAG
1 GGAATGTAAGATTACCAG
6379845 ATAATAAGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.39, C:0.11, G:0.24, T:0.26
Consensus pattern (20 bp):
GGAATGTAAGATTACCAGTA
Found at i:6380076 original size:37 final size:37
Alignment explanation
Indices: 6380003--6380074 Score: 94
Period size: 37 Copynumber: 2.0 Consensus size: 37
6379993 TGAAAAATAC
* *
6380003 TTATATATTTTCTTTAAAAAATTTAAATTCATAAAAT
1 TTATATATTTTCTTTAAAAAATTGAAAATCATAAAAT
*
6380040 TTATATAATTTT-TTTACAAAATTGAAAAT-ATAAAA
1 TTATAT-ATTTTCTTTAAAAAATTGAAAATCATAAAA
6380075 ATGTTTAATG
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
36 6 0.19
37 20 0.65
38 5 0.16
ACGTcount: A:0.49, C:0.04, G:0.01, T:0.46
Consensus pattern (37 bp):
TTATATATTTTCTTTAAAAAATTGAAAATCATAAAAT
Found at i:6381105 original size:3 final size:3
Alignment explanation
Indices: 6381097--6381122 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
6381087 AAAATCTATT
6381097 TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
6381123 GAATTAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:6381780 original size:83 final size:78
Alignment explanation
Indices: 6381671--6381836 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 78
6381661 CTAAAAAGTC
*
6381671 AAAAAGTGTTAGATAAAGAATAAAAAATAGAAATAAATCAAAGAAGATAAAAAGGAATTAAAAAC
1 AAAAAGTGTTAGATAAAGAATAAAAAA-A-AAATAAAACAAA-AA-ATAAAAAGGAATTAAAAAC
*
6381736 A-AAAGAAAGAAAAAAAT
62 AGAAA-AAAGAAAAAAAA
* * * * *
6381753 AAAAA-TGTTAGAAGTAAGGAATGAAAAAAAAATAAAACATAAAATAAATAGTAATTAAAAACAG
1 AAAAAGTGTTAG-A-TAAAGAATAAAAAAAAAATAAAACAAAAAATAAAAAGGAATTAAAAACAG
6381817 AAAAAAGAAAAAAAA
64 AAAAAAGAAAAAAAA
6381832 AAAAA
1 AAAAA
6381837 AAAAAAAGGT
Statistics
Matches: 74, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
79 34 0.46
80 5 0.07
81 16 0.22
82 7 0.09
83 12 0.16
ACGTcount: A:0.71, C:0.02, G:0.12, T:0.14
Consensus pattern (78 bp):
AAAAAGTGTTAGATAAAGAATAAAAAAAAAATAAAACAAAAAATAAAAAGGAATTAAAAACAGAA
AAAAGAAAAAAAA
Found at i:6383088 original size:26 final size:26
Alignment explanation
Indices: 6383059--6383108 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
6383049 GGACATGAAC
6383059 AATAAAAATAAAAT-TAATAAAAATAT
1 AATAAAAATAAAATATAA-AAAAATAT
* *
6383085 AATAATACTAAAATATAAAAAAAT
1 AATAAAAATAAAATATAAAAAAAT
6383109 GACAATTATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 18 0.86
27 3 0.14
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (26 bp):
AATAAAAATAAAATATAAAAAAATAT
Found at i:6383863 original size:84 final size:84
Alignment explanation
Indices: 6383775--6384750 Score: 990
Period size: 84 Copynumber: 12.1 Consensus size: 84
6383765 TTCTGTAAAT
6383775 ATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTC
1 ATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTC
6383840 GACTTAAGTTATGCTGCAA
66 GACTTAAGTTATGCTGCAA
* * *
6383859 ATGATATGCCTT-GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGG-TGACAGATAA--CTTCTA
1 ATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTC
* * * * *
6383920 GCCATGAGTTATTCTGTAA
66 GACTTAAGTTATGCTGCAA
* * * * ** ** *
6383939 ATGATGTGCCCTCGAAGCTGAGTGTAATCGAGTTCGGGGGTC--T--TTGGCAGATAGCCCTTCT
1 ATGATGTG-CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCT
*
6384000 CGACTTAAGCTATGCTGCAA
65 CGACTTAAGTTATGCTGCAA
6384020 ATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTC
1 ATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTC
6384085 GACTTAAGTTATGCTGCAA
66 GACTTAAGTTATGCTGCAA
* * * *
6384104 ATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGG-TGACAGATAACTCTTCTA
1 ATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTC
* * * * *
6384168 GCCATGAGTTATTCTGTAA
66 GACTTAAGTTATGCTGCAA
* * * * ** ** *
6384187 ATGATGTGCCCTCGAAGCTGAGTGTAATCGAGTTCGGGGGTC--T--TTGGCAGATAGCCCTTCT
1 ATGATGTG-CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCT
*
6384248 CGACTTAAGCTATGCTGC-A
65 CGACTTAAGTTATGCTGCAA
6384267 A--A--TGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAA-CCTTCTC
1 ATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTC
6384327 GACTTAAGTTATGCTGC-A
66 GACTTAAGTTATGCTGCAA
* * *
6384345 ATGA--TGCCTTGGAGCTGAGCGTAGTCGAAC-CGAAGGTCTTTGG-TGACAGATAACTCTTCTA
1 ATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTC
* * * * *
6384406 GCCATGAGTTATTCTGTAA
66 GACTTAAGTTATGCTGCAA
* * * * ** ** *
6384425 ATGATGTGCCCTCGAAGCTGAGTGTAATCGAGTTCGGGGGTC--T--TTGGCAGATAGCCC-TCT
1 ATGATGTG-CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCT
*
6384485 CGACTT-AGCTATGCTG---
65 CGACTTAAGTTATGCTGCAA
6384501 --GATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTC
1 ATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTC
6384564 GACTTAAGTTATGCTGCAA
66 GACTTAAGTTATGCTGCAA
* * ** *
6384583 ATGATATGCCTTGGAGCTGAGCGGAGTCGAACTCGAAGGTCTTT-G-TCACAGATAACCCTTCTA
1 ATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTC
* * *
6384646 GCCTTGAGTTATGCTGTAA
66 GACTTAAGTTATGCTGCAA
* * * * * * *
6384665 ATGATGTTCCCTCGAAGCTGAGTGTAATCGAACTCGAGGGTC--T--TTGGCAGATAGCCCTTCT
1 ATGATG-TGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCT
*
6384726 CGACTTAAGCTATGCTGCAA
65 CGACTTAAGTTATGCTGCAA
6384746 ATGAT
1 ATGAT
6384751 TTGTTTAAAA
Statistics
Matches: 723, Mismatches: 132, Indels: 77
0.78 0.14 0.08
Matches are distributed among these distances:
73 25 0.03
74 6 0.01
75 26 0.04
76 2 0.00
77 14 0.02
78 44 0.06
79 65 0.09
80 92 0.13
81 99 0.14
82 71 0.10
83 116 0.16
84 163 0.23
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (84 bp):
ATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTC
GACTTAAGTTATGCTGCAA
Found at i:6384720 original size:240 final size:243
Alignment explanation
Indices: 6383777--6384742 Score: 1702
Period size: 240 Copynumber: 4.0 Consensus size: 243
6383767 CTGTAAATAT
6383777 GATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGA
1 GATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGA
6383842 CTTAAGTTATGCTGCAAATGATATGCCTT-GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTG
66 CTTAAGTTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTG
6383906 ACAGATAA--CTTCTAGCCATGAGTTATTCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCG
131 ACAGATAACTCTTCTAGCCATGAGTTATTCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCG
6383969 AGTTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTG
196 AGTTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTG
6384017 CAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTT
1 -----GATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTT
6384082 CTCGACTTAAGTTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTT
61 CTCGACTTAAGTTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTT
6384147 TGGTGACAGATAACTCTTCTAGCCATGAGTTATTCTGTAAATGATGTGCCCTCGAAGCTGAGTGT
126 TGGTGACAGATAACTCTTCTAGCCATGAGTTATTCTGTAAATGATGTGCCCTCGAAGCTGAGTGT
6384212 AATCGAGTTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTG
191 AATCGAGTTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTG
* **
6384265 CAAATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAA-CCTTCTCGA
1 GATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGA
6384329 CTTAAGTTATGCTGC-AATG--ATGCCTTGGAGCTGAGCGTAGTCGAAC-CGAAGGTCTTTGGTG
66 CTTAAGTTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTG
6384390 ACAGATAACTCTTCTAGCCATGAGTTATTCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCG
131 ACAGATAACTCTTCTAGCCATGAGTTATTCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCG
6384455 AGTTCGGGGGTCTTTGGCAGATAGCCC-TCTCGACTT-AGCTATGCTG
196 AGTTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTG
6384501 GATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGA
1 GATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGA
* *
6384566 CTTAAGTTATGCTGCAAATGATATGCCTTGGAGCTGAGCGGAGTCGAACTCGAAGGTCTTT-GTC
66 CTTAAGTTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTG
* * * *
6384630 ACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTTCCCTCGAAGCTGAGTGTAATCG
131 ACAGATAACTCTTCTAGCCATGAGTTATTCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCG
** *
6384695 AACTCGAGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTG
196 AGTTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTG
6384743 CAAATGATTT
Statistics
Matches: 696, Mismatches: 15, Indels: 23
0.95 0.02 0.03
Matches are distributed among these distances:
236 62 0.09
237 33 0.05
238 111 0.16
239 27 0.04
240 113 0.16
241 24 0.03
242 34 0.05
243 52 0.07
245 94 0.14
246 43 0.06
248 103 0.15
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.30
Consensus pattern (243 bp):
GATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGA
CTTAAGTTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTG
ACAGATAACTCTTCTAGCCATGAGTTATTCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCG
AGTTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTG
Found at i:6388272 original size:18 final size:19
Alignment explanation
Indices: 6388232--6388274 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
6388222 AGTTAATGTG
6388232 AATGCAGAGAAAATAACAA
1 AATGCAGAGAAAATAACAA
6388251 AATGCAGAGAAAATAA-AA
1 AATGCAGAGAAAATAACAA
6388269 AATGCA
1 AATGCA
6388275 AAATGTCTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 8 0.33
19 16 0.67
ACGTcount: A:0.63, C:0.09, G:0.16, T:0.12
Consensus pattern (19 bp):
AATGCAGAGAAAATAACAA
Found at i:6391330 original size:15 final size:14
Alignment explanation
Indices: 6391310--6391385 Score: 59
Period size: 15 Copynumber: 5.3 Consensus size: 14
6391300 GGACATGAAC
6391310 AATAAAAATAAAATT
1 AATAAAAATAAAA-T
6391325 AATAAAAATAATAAT
1 AATAAAAATAA-AAT
6391340 AATACTAAAATAAAA-
1 AATA--AAAATAAAAT
*
6391355 AA-AAAAATGACAAT
1 AATAAAAAT-AAAAT
* *
6391369 TATAATAATAAAA-
1 AATAAAAATAAAAT
6391382 AATA
1 AATA
6391386 TTTTTCAAAA
Statistics
Matches: 50, Mismatches: 5, Indels: 14
0.72 0.07 0.20
Matches are distributed among these distances:
12 5 0.10
13 6 0.12
14 5 0.10
15 23 0.46
16 4 0.08
17 7 0.14
ACGTcount: A:0.72, C:0.03, G:0.01, T:0.24
Consensus pattern (14 bp):
AATAAAAATAAAAT
Found at i:6391446 original size:36 final size:36
Alignment explanation
Indices: 6391399--6391659 Score: 117
Period size: 38 Copynumber: 7.4 Consensus size: 36
6391389 TTCAAAAACC
* *
6391399 TATATAATATATATTTTCAAAAATATTTTAAAATTA
1 TATATTATATATATTTTCAAAAATATTTTAAAACTA
** *
6391435 TATATTATATATATATCTTTTTAAAATGTTTT----C-A
1 TATA-T-TATATATAT-TTTCAAAAATATTTTAAAACTA
* * * *
6391469 -A-ACT-CATA-ATT-TCAAAAATGTTTTGAAA-T-
1 TATATTATATATATTTTCAAAAATATTTTAAAACTA
* *
6391498 TATATGT-TATATGTTTTCAAAAATGATTTCAAAAACTA
1 TATAT-TATATATATTTTCAAAAAT-ATTT-TAAAACTA
* *
6391536 TATAATATATATTTTTTCAAAAATATTTTCAAAAACTA
1 TATATTATATATATTTTCAAAAATATTTT--AAAACTA
* *
6391574 TATA-T-TATATATTTTCAAAATATTTTTTAAAAAAAATA
1 TATATTATATATATTTTCAAAA-ATATTTT---AAAACTA
* *
6391612 TATATTATATA-GTTTTC-AAAATGA-TTTCAAACTA
1 TATATTATATATATTTTCAAAAAT-ATTTTAAAACTA
*
6391646 TATAATATATATAT
1 TATATTATATATAT
6391660 ATAAATAATA
Statistics
Matches: 171, Mismatches: 28, Indels: 53
0.68 0.11 0.21
Matches are distributed among these distances:
26 11 0.06
27 1 0.01
28 2 0.01
29 3 0.02
30 2 0.01
31 1 0.01
32 5 0.03
33 3 0.02
34 24 0.14
35 4 0.02
36 21 0.12
37 19 0.11
38 53 0.31
39 18 0.11
40 4 0.02
ACGTcount: A:0.45, C:0.06, G:0.03, T:0.46
Consensus pattern (36 bp):
TATATTATATATATTTTCAAAAATATTTTAAAACTA
Found at i:6391554 original size:38 final size:38
Alignment explanation
Indices: 6391505--6391657 Score: 167
Period size: 38 Copynumber: 4.1 Consensus size: 38
6391495 AATTATATGT
6391505 TATATGTTTTCAAAAATGATTTCAAAAACTATATAATA
1 TATATGTTTTCAAAAATGATTTCAAAAACTATATAATA
*
6391543 TATATTTTTTCAAAAAT-ATTTTCAAAAACTATAT-AT-
1 TATATGTTTTCAAAAATGA-TTTCAAAAACTATATAATA
* ** * * *
6391579 TATATATTTTCAAAATATTTTTTAAAAAAAATATATATTA
1 TATATGTTTTCAAAA-ATGATTT-CAAAAACTATATAATA
6391619 TATA-GTTTTC-AAAATGATTTC--AAACTATATAATA
1 TATATGTTTTCAAAAATGATTTCAAAAACTATATAATA
6391653 TATAT
1 TATAT
6391658 ATATAAATAA
Statistics
Matches: 96, Mismatches: 12, Indels: 17
0.77 0.10 0.14
Matches are distributed among these distances:
34 15 0.16
36 14 0.15
37 13 0.14
38 44 0.46
39 6 0.06
40 4 0.04
ACGTcount: A:0.46, C:0.07, G:0.03, T:0.44
Consensus pattern (38 bp):
TATATGTTTTCAAAAATGATTTCAAAAACTATATAATA
Found at i:6396768 original size:120 final size:120
Alignment explanation
Indices: 6396555--6396796 Score: 439
Period size: 120 Copynumber: 2.0 Consensus size: 120
6396545 AAAATCTGAT
* *
6396555 AAAATTTCAAATTTGATGCATCAATGTCAGGGAAGGTTTGTTCAAGCTGTTTGATGTTCGGTAAC
1 AAAATTGCAAATTTGATGCATCAATGTCAGGGAAGGTTTGTTCAAGATGTTTGATGTTCGGTAAC
6396620 CATTTCTGCCACTCGGAAACGACGACGACGAAAGCAGCAAGAGCTTAACATACAG
66 CATTTCTGCCACTCGGAAACGACGACGACGAAAGCAGCAAGAGCTTAACATACAG
*
6396675 AAAATTGCAAATTTTATGCATCAATGTCAGGGAAGGTTTGTTCAAGATGTTTGATGTTCGGTAAC
1 AAAATTGCAAATTTGATGCATCAATGTCAGGGAAGGTTTGTTCAAGATGTTTGATGTTCGGTAAC
* *
6396740 CATTTCTGCCACTCGGAACCGACGACGACGAATGCAGCAAGAGCTTAACATACAG
66 CATTTCTGCCACTCGGAAACGACGACGACGAAAGCAGCAAGAGCTTAACATACAG
6396795 AA
1 AA
6396797 CCGATTCGAA
Statistics
Matches: 117, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
120 117 1.00
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (120 bp):
AAAATTGCAAATTTGATGCATCAATGTCAGGGAAGGTTTGTTCAAGATGTTTGATGTTCGGTAAC
CATTTCTGCCACTCGGAAACGACGACGACGAAAGCAGCAAGAGCTTAACATACAG
Found at i:6401619 original size:2 final size:2
Alignment explanation
Indices: 6401612--6401636 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
6401602 ACTTTCCTGT
6401612 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
6401637 ATTCCTTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:6402244 original size:54 final size:54
Alignment explanation
Indices: 6402185--6402292 Score: 144
Period size: 54 Copynumber: 2.0 Consensus size: 54
6402175 CTAGCTGATG
6402185 CAGATGGCTATAGATTCAACAATTACGTAAGAATGATCTTACTATCTAGTTGTA
1 CAGATGGCTATAGATTCAACAATTACGTAAGAATGATCTTACTATCTAGTTGTA
* *** * * * *
6402239 CAGATGGTTATAGATTCAATGGTTACTTCAGAATGATCTTGCTTTCTAGTTGTA
1 CAGATGGCTATAGATTCAACAATTACGTAAGAATGATCTTACTATCTAGTTGTA
6402293 AATGATACGG
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 46 1.00
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.37
Consensus pattern (54 bp):
CAGATGGCTATAGATTCAACAATTACGTAAGAATGATCTTACTATCTAGTTGTA
Found at i:6405469 original size:17 final size:17
Alignment explanation
Indices: 6405449--6405500 Score: 54
Period size: 16 Copynumber: 3.0 Consensus size: 17
6405439 TAAAATCTTA
6405449 TATTTTTTATTATTATT
1 TATTTTTTATTATTATT
*
6405466 TA-TTTTAATT-TTGACTT
1 TATTTTTTATTATT-A-TT
6405483 TATTTTTTACTTATTATT
1 TATTTTTTA-TTATTATT
6405501 CCATAGAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 9
0.72 0.05 0.23
Matches are distributed among these distances:
15 2 0.07
16 8 0.29
17 6 0.21
18 7 0.25
19 3 0.11
20 2 0.07
ACGTcount: A:0.23, C:0.04, G:0.02, T:0.71
Consensus pattern (17 bp):
TATTTTTTATTATTATT
Found at i:6407404 original size:20 final size:21
Alignment explanation
Indices: 6407379--6407471 Score: 100
Period size: 21 Copynumber: 4.5 Consensus size: 21
6407369 TTTTCCCAAT
*
6407379 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
6407399 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
*
6407420 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
6407440 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
6407461 TCGCAATGCGA
1 TCGCAATGCGA
6407472 TACTGACTAT
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 27 0.47
21 31 0.53
ACGTcount: A:0.40, C:0.18, G:0.25, T:0.17
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:6407424 original size:41 final size:41
Alignment explanation
Indices: 6407379--6407471 Score: 186
Period size: 41 Copynumber: 2.3 Consensus size: 41
6407369 TTTTCCCAAT
6407379 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
6407420 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
6407461 TCGCAATGCGA
1 TCGCAATGCGA
6407472 TACTGACTAT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.40, C:0.18, G:0.25, T:0.17
Consensus pattern (41 bp):
TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
Found at i:6407484 original size:41 final size:41
Alignment explanation
Indices: 6407398--6407532 Score: 132
Period size: 41 Copynumber: 3.3 Consensus size: 41
6407388 GAATAAGTAA
* *
6407398 ATCGCAACGCGAATTGGGAAAATCGCAATGCGAATA-AGTA-A
1 ATCGCAACGCGAATTGGGAAAATCGCAATGCG-ATACTG-ACT
6407439 ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTGACT
1 ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTGACT
* * ** * * *
6407480 ATCGCAATGCGATAAT-AAAAAATCGCAACGAGATACTTACT
1 ATCGCAACGCGA-ATTGGGAAAATCGCAATGCGATACTGACT
*
6407521 TTCGCAACGCGA
1 ATCGCAACGCGA
6407533 TACTGACTTT
Statistics
Matches: 80, Mismatches: 11, Indels: 6
0.82 0.11 0.06
Matches are distributed among these distances:
40 4 0.05
41 74 0.93
42 2 0.03
ACGTcount: A:0.39, C:0.21, G:0.21, T:0.19
Consensus pattern (41 bp):
ATCGCAACGCGAATTGGGAAAATCGCAATGCGATACTGACT
Found at i:6407485 original size:20 final size:20
Alignment explanation
Indices: 6407460--6407554 Score: 91
Period size: 20 Copynumber: 4.7 Consensus size: 20
6407450 AATTGGGAAA
*
6407460 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* * * **
6407480 ATCGCAATGCGATAATAAAAA
1 ATCGCAACGCGATACT-GACT
* *
6407501 ATCGCAACGAGATACTTACT
1 ATCGCAACGCGATACTGACT
*
6407521 TTCGCAACGCGATACTGACT
1 ATCGCAACGCGATACTGACT
*
6407541 TTCGCAACGCGATA
1 ATCGCAACGCGATA
6407555 ATACATAATC
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
20 47 0.77
21 14 0.23
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.23
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:6407770 original size:22 final size:22
Alignment explanation
Indices: 6407742--6407785 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
6407732 CACTCTCTCA
*
6407742 CCCATCTCCGATGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
*
6407764 CCCATCTCCGGCGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
6407786 TATCTAAATC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.20, C:0.43, G:0.16, T:0.20
Consensus pattern (22 bp):
CCCATCTCCGACGAAATCCGTC
Found at i:6408074 original size:20 final size:20
Alignment explanation
Indices: 6408049--6408086 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
6408039 TGATTCTCTC
6408049 GTTGCGATAGTCATTTTCGT
1 GTTGCGATAGTCATTTTCGT
**
6408069 GTTGCGATTTTCATTTTC
1 GTTGCGATAGTCATTTTC
6408087 AGAAACTATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.13, C:0.16, G:0.21, T:0.50
Consensus pattern (20 bp):
GTTGCGATAGTCATTTTCGT
Found at i:6409426 original size:18 final size:18
Alignment explanation
Indices: 6409405--6409449 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
6409395 TCCACTTCGG
**
6409405 GAGCCATCACCTCGGCCA
1 GAGCCATCACCTCACCCA
*
6409423 GAGCTATCACCTCACCCA
1 GAGCCATCACCTCACCCA
6409441 GAGCCATCA
1 GAGCCATCA
6409450 TCTGATCGAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.27, C:0.42, G:0.18, T:0.13
Consensus pattern (18 bp):
GAGCCATCACCTCACCCA
Found at i:6409972 original size:20 final size:20
Alignment explanation
Indices: 6409922--6409988 Score: 82
Period size: 20 Copynumber: 3.4 Consensus size: 20
6409912 TAGTTTACTT
*
6409922 TCGCAACACGAAAATGACTA
1 TCGCAACGCGAAAATGACTA
*
6409942 TCGCAACGCGAAAATGGCTA
1 TCGCAACGCGAAAATGACTA
* **
6409962 TCGCAATGCG-AAATGAAAA
1 TCGCAACGCGAAAATGACTA
6409981 TCGCAACG
1 TCGCAACG
6409989 ACAAAATCGC
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
19 13 0.32
20 27 0.68
ACGTcount: A:0.40, C:0.24, G:0.21, T:0.15
Consensus pattern (20 bp):
TCGCAACGCGAAAATGACTA
Found at i:6409996 original size:14 final size:14
Alignment explanation
Indices: 6409977--6410034 Score: 71
Period size: 14 Copynumber: 3.9 Consensus size: 14
6409967 ATGCGAAATG
6409977 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
6409991 AAAATCGCAATGCGAA
1 AAAATCGCAA--CGAC
6410007 ATGAAATCGCAACGAC
1 A--AAATCGCAACGAC
6410023 AAAATCGCAACG
1 AAAATCGCAACG
6410035 CGAAATGAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 21 0.55
16 8 0.21
18 9 0.24
ACGTcount: A:0.48, C:0.24, G:0.17, T:0.10
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:6410003 original size:33 final size:33
Alignment explanation
Indices: 6409961--6410048 Score: 160
Period size: 32 Copynumber: 2.7 Consensus size: 33
6409951 GAAAATGGCT
6409961 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
6409994 ATCGCAATGCGAAATG-AAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
*
6410026 ATCGCAACGCGAAATGAAAATCG
1 ATCGCAATGCGAAATGAAAATCG
6410049 TAATGCGATT
Statistics
Matches: 53, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
32 31 0.58
33 22 0.42
ACGTcount: A:0.47, C:0.22, G:0.19, T:0.12
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGACAAA
Found at i:6410087 original size:14 final size:14
Alignment explanation
Indices: 6410068--6410125 Score: 71
Period size: 14 Copynumber: 3.9 Consensus size: 14
6410058 TTGTGTTTCG
6410068 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
*
6410082 CGTTGCGATTTCATTT
1 CGTTGCGATTT--TGT
6410098 CGCGTTGCGATTTTGT
1 --CGTTGCGATTTTGT
6410114 CGTTGCGATTTT
1 CGTTGCGATTTT
6410126 TATTTCGCAT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 23 0.61
16 4 0.11
18 11 0.29
ACGTcount: A:0.09, C:0.17, G:0.26, T:0.48
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:6410139 original size:33 final size:33
Alignment explanation
Indices: 6410052--6410141 Score: 137
Period size: 32 Copynumber: 2.8 Consensus size: 33
6410042 AAAATCGTAA
* *
6410052 TGCGATTTGTGTTTCGCGTTGCGATTTTGTCGT
1 TGCGATTTTTATTTCGCGTTGCGATTTTGTCGT
*
6410085 TGCGA-TTTCATTTCGCGTTGCGATTTTGTCGT
1 TGCGATTTTTATTTCGCGTTGCGATTTTGTCGT
*
6410117 TGCGATTTTTATTTCGCATTGCGAT
1 TGCGATTTTTATTTCGCGTTGCGAT
6410142 AGCCATTTCC
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
32 29 0.57
33 22 0.43
ACGTcount: A:0.10, C:0.17, G:0.26, T:0.48
Consensus pattern (33 bp):
TGCGATTTTTATTTCGCGTTGCGATTTTGTCGT
Found at i:6410160 original size:20 final size:19
Alignment explanation
Indices: 6410127--6410180 Score: 81
Period size: 20 Copynumber: 2.8 Consensus size: 19
6410117 TGCGATTTTT
*
6410127 ATTTCGCATTGCGATAGCC
1 ATTTCGCGTTGCGATAGCC
*
6410146 ATTTCCGCGTTGCGATAGTC
1 ATTT-CGCGTTGCGATAGCC
6410166 ATTTCGCGTTGCGAT
1 ATTTCGCGTTGCGAT
6410181 TTTAAGTTTC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
19 15 0.47
20 17 0.53
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.35
Consensus pattern (19 bp):
ATTTCGCGTTGCGATAGCC
Found at i:6412221 original size:19 final size:19
Alignment explanation
Indices: 6412199--6412266 Score: 92
Period size: 19 Copynumber: 3.8 Consensus size: 19
6412189 ATCGCAACGA
6412199 GAAAATCGCAATGCGAAAT
1 GAAAATCGCAATGCGAAAT
*
6412218 GAAAATCACAATGCGAAAT
1 GAAAATCGCAATGCGAAAT
6412237 GAAAATCGCAA--CG--A-
1 GAAAATCGCAATGCGAAAT
6412251 GAAAATCGCAATGCGA
1 GAAAATCGCAATGCGA
6412267 TTTTCATTTC
Statistics
Matches: 44, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
14 11 0.25
15 1 0.02
16 2 0.05
17 2 0.05
19 28 0.64
ACGTcount: A:0.49, C:0.18, G:0.21, T:0.13
Consensus pattern (19 bp):
GAAAATCGCAATGCGAAAT
Found at i:6412363 original size:19 final size:19
Alignment explanation
Indices: 6412287--6412360 Score: 112
Period size: 19 Copynumber: 3.8 Consensus size: 19
6412277 GCATTGCGAT
* *
6412287 TTTCTCGTTGCGATAACCA
1 TTTCGCGTTGCGATAGCCA
6412306 TTTTCGCGTTGCGATAGCCA
1 -TTTCGCGTTGCGATAGCCA
*
6412326 TTTCGCGTTGCGATAGTCA
1 TTTCGCGTTGCGATAGCCA
6412345 TTTCGCGTTGCGATAG
1 TTTCGCGTTGCGATAG
6412361 TCAAATGAAT
Statistics
Matches: 51, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
19 34 0.67
20 17 0.33
ACGTcount: A:0.16, C:0.23, G:0.24, T:0.36
Consensus pattern (19 bp):
TTTCGCGTTGCGATAGCCA
Found at i:6413446 original size:24 final size:24
Alignment explanation
Indices: 6413419--6413472 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
6413409 GTATTCGAAA
* *
6413419 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATATTGGTCAATACACGGAC
*
6413443 TTTGATATTGGTCAATACACGGAT
1 TTTGATATTGGTCAATACACGGAC
6413467 TTTGAT
1 TTTGAT
6413473 GATGTTTCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.39
Consensus pattern (24 bp):
TTTGATATTGGTCAATACACGGAC
Found at i:6413664 original size:12 final size:12
Alignment explanation
Indices: 6413647--6413671 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
6413637 ATATAATCCT
6413647 GAAGAAGAAAAA
1 GAAGAAGAAAAA
6413659 GAAGAAGAAAAA
1 GAAGAAGAAAAA
6413671 G
1 G
6413672 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:6415986 original size:19 final size:19
Alignment explanation
Indices: 6415964--6416151 Score: 208
Period size: 19 Copynumber: 10.7 Consensus size: 19
6415954 GGAAATTACT
6415964 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
6415983 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
6415997 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
* *
6416016 ATCGCAA--CG--CT-AAT
1 ATCGCAATGCGAAATGAAA
*
6416030 TTCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
**
6416049 ATCGCAA--CG--A-GGGA
1 ATCGCAATGCGAAATGAAA
6416063 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
6416082 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
6416101 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
6416120 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
6416139 ATCGCAACGCGAA
1 ATCGCAATGCGAA
6416152 TTTAATTTCG
Statistics
Matches: 141, Mismatches: 13, Indels: 30
0.77 0.07 0.16
Matches are distributed among these distances:
14 27 0.19
15 3 0.02
16 6 0.04
17 6 0.04
18 3 0.02
19 96 0.68
ACGTcount: A:0.44, C:0.19, G:0.22, T:0.15
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:6416006 original size:33 final size:33
Alignment explanation
Indices: 6415964--6416126 Score: 220
Period size: 33 Copynumber: 4.8 Consensus size: 33
6415954 GGAAATTACT
6415964 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
**
6415997 ATCGCAATGCGAAATGAAAATCGCAACGCTA-A
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
* *
6416029 TTTCGCAATGCGAAATGAAAATCGCAACGAGGGA
1 -ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
*
6416063 ATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAAATCGCAA--CG--A-GAGA
6416101 ATCGCAATGCGAAATGAAAATCGCAA
1 ATCGCAATGCGAAATGAAAATCGCAA
6416127 TGCGAAATGA
Statistics
Matches: 114, Mismatches: 9, Indels: 9
0.86 0.07 0.07
Matches are distributed among these distances:
32 1 0.01
33 81 0.71
34 1 0.01
35 2 0.02
37 1 0.01
38 28 0.25
ACGTcount: A:0.44, C:0.18, G:0.22, T:0.15
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:6416071 original size:66 final size:69
Alignment explanation
Indices: 6415964--6416126 Score: 251
Period size: 66 Copynumber: 2.4 Consensus size: 69
6415954 GGAAATTACT
*
6415964 ATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAA-CG-CT
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAAGCGAAT
*
6416027 -AAT
66 GAAA
* *
6416030 TTCGCAATGCGAAATGAAAATCGCAACGAGGGAATCGCAATGCGAAATGAAAATCGCAATGCGAA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAA-GCG-A
6416095 ATGAAA
64 ATGAAA
6416101 ATCGCAATGCGAAATGAAAATCGCAA
1 ATCGCAATGCGAAATGAAAATCGCAA
6416127 TGCGAAATGA
Statistics
Matches: 87, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
66 57 0.66
68 2 0.02
70 1 0.01
71 27 0.31
ACGTcount: A:0.44, C:0.18, G:0.22, T:0.15
Consensus pattern (69 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAAGCGAAT
GAAA
Found at i:6416169 original size:19 final size:20
Alignment explanation
Indices: 6416147--6416189 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
6416137 AAATCGCAAC
6416147 GCGAATTT-AATTTCGCGTT
1 GCGAATTTCAATTTCGCGTT
* *
6416166 GCGATTTTCATTTTCGCGTT
1 GCGAATTTCAATTTCGCGTT
6416186 GCGA
1 GCGA
6416190 TTCTCTCGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.16, C:0.19, G:0.23, T:0.42
Consensus pattern (20 bp):
GCGAATTTCAATTTCGCGTT
Found at i:6416169 original size:38 final size:38
Alignment explanation
Indices: 6415964--6416151 Score: 172
Period size: 33 Copynumber: 5.3 Consensus size: 38
6415954 GGAAATTACT
* *
6415964 ATCGCAATGCGAAATGAAAATCGCAA--CG--A-GAGA
1 ATCGCAACGCGAAATGAAAATCGCAATGCGAAATGAAA
* * *
6415997 ATCGCAATGCGAAATGAAAATCGCAA--CG--CT-AAT
1 ATCGCAACGCGAAATGAAAATCGCAATGCGAAATGAAA
* * **
6416030 TTCGCAATGCGAAATGAAAATCGCAA--CG--A-GGGA
1 ATCGCAACGCGAAATGAAAATCGCAATGCGAAATGAAA
*
6416063 ATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAA
1 ATCGCAACGCGAAATGAAAATCGCAATGCGAAATGAAA
*
6416101 ATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAA
1 ATCGCAACGCGAAATGAAAATCGCAATGCGAAATGAAA
6416139 ATCGCAACGCGAA
1 ATCGCAACGCGAA
6416152 TTTAATTTCG
Statistics
Matches: 136, Mismatches: 12, Indels: 9
0.87 0.08 0.06
Matches are distributed among these distances:
33 81 0.60
35 2 0.01
37 1 0.01
38 52 0.38
ACGTcount: A:0.44, C:0.19, G:0.22, T:0.15
Consensus pattern (38 bp):
ATCGCAACGCGAAATGAAAATCGCAATGCGAAATGAAA
Found at i:6416169 original size:57 final size:57
Alignment explanation
Indices: 6415964--6416151 Score: 199
Period size: 52 Copynumber: 3.6 Consensus size: 57
6415954 GGAAATTACT
*
6415964 ATCGCAATGCGAAATGAAAATCGCAA--CG--A-GAGAATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGCGAAATGAAAATCGCAATGCGAAATGAAA
* ** * **
6416016 ATCGCAA--CG--CT-AATTTCGCAATGCGAAATGAAAATCGCAA--CG--A-GGGA
1 ATCGCAATGCGAAATGAAAATCGCAACGCGAAATGAAAATCGCAATGCGAAATGAAA
*
6416063 ATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGCGAAATGAAAATCGCAATGCGAAATGAAA
6416120 ATCGCAATGCGAAATGAAAATCGCAACGCGAA
1 ATCGCAATGCGAAATGAAAATCGCAACGCGAA
6416152 TTTAATTTCG
Statistics
Matches: 109, Mismatches: 12, Indels: 25
0.75 0.08 0.17
Matches are distributed among these distances:
47 17 0.16
48 2 0.02
49 4 0.04
50 4 0.04
51 2 0.02
52 44 0.40
54 2 0.02
56 1 0.01
57 33 0.30
ACGTcount: A:0.44, C:0.19, G:0.22, T:0.15
Consensus pattern (57 bp):
ATCGCAATGCGAAATGAAAATCGCAACGCGAAATGAAAATCGCAATGCGAAATGAAA
Found at i:6416174 original size:14 final size:14
Alignment explanation
Indices: 6416175--6416208 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
6416165 TGCGATTTTC
6416175 ATTTTCGCGTTGCG
1 ATTTTCGCGTTGCG
* *
6416189 ATTCTCTCGTTGCG
1 ATTTTCGCGTTGCG
6416203 ATTTTC
1 ATTTTC
6416209 ATTTCGCATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.09, C:0.24, G:0.21, T:0.47
Consensus pattern (14 bp):
ATTTTCGCGTTGCG
Found at i:6416349 original size:14 final size:14
Alignment explanation
Indices: 6416330--6416366 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
6416320 CATCAATTAA
6416330 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
6416344 ACAAATCACCTTTT
1 ACAAATCAACTTTT
6416358 ACAAATCAA
1 ACAAATCAA
6416367 TTAAACAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.24, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:6417789 original size:21 final size:21
Alignment explanation
Indices: 6417723--6417789 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
6417713 GTGAATCGGG
*
6417723 CTCTTGAATGGTGGGA-GGGA
1 CTCTTGAACGGTGGGAGGGGA
* * ** * *
6417743 CCTCTTCAACGATGACAGTGGC
1 -CTCTTGAACGGTGGGAGGGGA
6417765 CTCTTGAACGGTGGGAGGGGA
1 CTCTTGAACGGTGGGAGGGGA
6417786 CTCT
1 CTCT
6417790 CGAGGAATGA
Statistics
Matches: 32, Mismatches: 13, Indels: 2
0.68 0.28 0.04
Matches are distributed among these distances:
21 30 0.94
22 2 0.06
ACGTcount: A:0.19, C:0.21, G:0.36, T:0.24
Consensus pattern (21 bp):
CTCTTGAACGGTGGGAGGGGA
Found at i:6417808 original size:42 final size:41
Alignment explanation
Indices: 6417723--6417845 Score: 113
Period size: 42 Copynumber: 2.9 Consensus size: 41
6417713 GTGAATCGGG
* * * * *
6417723 CTCTTGAATGGTGGGA-GGGACCTCTTCAACGATGACAGTGGC
1 CTCTTGAACGGTGGGAGGGGA-CTC-TCGAGGATGATAGGGGC
6417765 CTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGGGGC
1 CTCTTGAACGGTGGGAGGGGACTCTCGAGG-ATGATAGGGGC
* * * * *
6417807 CTCTTCAACGATAGGAGTGGACTCTTGAGGGATGATAGG
1 CTCTTGAACGGTGGGAGGGGACTCTCGA-GGATGATAGG
6417846 CTAGTCGGGC
Statistics
Matches: 68, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
41 4 0.06
42 58 0.85
43 6 0.09
ACGTcount: A:0.23, C:0.18, G:0.37, T:0.23
Consensus pattern (41 bp):
CTCTTGAACGGTGGGAGGGGACTCTCGAGGATGATAGGGGC
Found at i:6419920 original size:33 final size:33
Alignment explanation
Indices: 6419863--6419961 Score: 144
Period size: 33 Copynumber: 3.0 Consensus size: 33
6419853 ACGAGATAAT
*
6419863 GAGAATCGCAACGCGGAAATGACTATCGCAACGA
1 GAGAATCGCAACGC-GAAATGACTATCGCAACCA
*
6419897 GAGAATCGCAACGCGAAATGACTATCGCGACCA
1 GAGAATCGCAACGCGAAATGACTATCGCAACCA
* **
6419930 GACAATCGCAACGCGAAATGAAAATCGCAACC
1 GAGAATCGCAACGCGAAATGACTATCGCAACC
6419962 GCGAAATGAA
Statistics
Matches: 59, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
33 45 0.76
34 14 0.24
ACGTcount: A:0.39, C:0.26, G:0.23, T:0.11
Consensus pattern (33 bp):
GAGAATCGCAACGCGAAATGACTATCGCAACCA
Found at i:6419955 original size:19 final size:19
Alignment explanation
Indices: 6419838--6420003 Score: 136
Period size: 20 Copynumber: 9.1 Consensus size: 19
6419828 TCTTTTGGTT
* *
6419838 GAAATGAAAACCGCAACGA
1 GAAATGAAAATCGCAACGC
*
6419857 GATAATGAGAATCGCAACGC
1 GA-AATGAAAATCGCAACGC
**
6419877 GGAAATGACTATCGCAA--C
1 -GAAATGAAAATCGCAACGC
*
6419895 G--A-GAGAATCGCAACGC
1 GAAATGAAAATCGCAACGC
** *
6419911 GAAATGACTATCGCGAC-C
1 GAAATGAAAATCGCAACGC
*
6419929 ---A-GACAATCGCAACGC
1 GAAATGAAAATCGCAACGC
6419944 GAAATGAAAATCGCAACCGC
1 GAAATGAAAATCGCAA-CGC
6419964 GAAATGAAAATCGCAACGC
1 GAAATGAAAATCGCAACGC
*
6419983 GAAATGAAAATCGCAATGC
1 GAAATGAAAATCGCAACGC
6420002 GA
1 GA
6420004 TTTTGGTTTC
Statistics
Matches: 120, Mismatches: 14, Indels: 26
0.75 0.09 0.16
Matches are distributed among these distances:
14 19 0.16
15 3 0.03
16 2 0.02
17 1 0.01
18 4 0.03
19 44 0.37
20 45 0.38
21 2 0.02
ACGTcount: A:0.43, C:0.23, G:0.23, T:0.11
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGC
Found at i:6420032 original size:19 final size:19
Alignment explanation
Indices: 6419999--6420065 Score: 89
Period size: 19 Copynumber: 3.5 Consensus size: 19
6419989 AAAATCGCAA
**
6419999 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTTATTTCGCGT
6420018 TGCGATTTTTATTTCGCGT
1 TGCGATTTTTATTTCGCGT
**
6420037 TGCGATAGTTATTTCCGCGT
1 TGCGATTTTTATTT-CGCGT
6420057 TGCGATTTT
1 TGCGATTTT
6420066 CATTCTCGAA
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
19 29 0.71
20 12 0.29
ACGTcount: A:0.10, C:0.16, G:0.25, T:0.48
Consensus pattern (19 bp):
TGCGATTTTTATTTCGCGT
Found at i:6420653 original size:41 final size:41
Alignment explanation
Indices: 6420601--6420678 Score: 111
Period size: 41 Copynumber: 1.9 Consensus size: 41
6420591 CGAAAATCAG
* * *
6420601 TATCGCGTTGCGAAAGTAAGTATCTCGTTGCGATTTTTTAT
1 TATCGCATTGCGAAAGTAAGTATCGCATTGCGATTTTTTAT
* *
6420642 TATCGCATTGCGATAGTCAGTATCGCATTGCGATTTT
1 TATCGCATTGCGAAAGTAAGTATCGCATTGCGATTTT
6420679 CCCAATTCGC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 32 1.00
ACGTcount: A:0.22, C:0.17, G:0.22, T:0.40
Consensus pattern (41 bp):
TATCGCATTGCGAAAGTAAGTATCGCATTGCGATTTTTTAT
Found at i:6420667 original size:20 final size:20
Alignment explanation
Indices: 6420582--6420675 Score: 80
Period size: 20 Copynumber: 4.7 Consensus size: 20
6420572 CGCTATGTAA
* *
6420582 ATCGCGTTGCGAAAATCAGT
1 ATCGCGTTGCGATAGTCAGT
* *
6420602 ATCGCGTTGCGAAAGTAAGT
1 ATCGCGTTGCGATAGTCAGT
* ** * *
6420622 ATCTCGTTGCGATTTTTTATT
1 ATCGCGTTGCGA-TAGTCAGT
*
6420643 ATCGCATTGCGATAGTCAGT
1 ATCGCGTTGCGATAGTCAGT
*
6420663 ATCGCATTGCGAT
1 ATCGCGTTGCGAT
6420676 TTTCCCAATT
Statistics
Matches: 59, Mismatches: 14, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
20 46 0.78
21 13 0.22
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.34
Consensus pattern (20 bp):
ATCGCGTTGCGATAGTCAGT
Found at i:6420696 original size:21 final size:21
Alignment explanation
Indices: 6420664--6420760 Score: 133
Period size: 21 Copynumber: 4.7 Consensus size: 21
6420654 ATAGTCAGTA
*
6420664 TCGCATTGCGATTTTCCCAAT
1 TCGCGTTGCGATTTTCCCAAT
* * **
6420685 TCGCGTTACGA-TTTACTTAT
1 TCGCGTTGCGATTTTCCCAAT
*
6420705 TCGCATTGCGATTTTCCCAAT
1 TCGCGTTGCGATTTTCCCAAT
6420726 TCGCGTTGCGATTTTCCCAAT
1 TCGCGTTGCGATTTTCCCAAT
6420747 TCGCGTTGCGATTT
1 TCGCGTTGCGATTT
6420761 ACTTATTCGC
Statistics
Matches: 64, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
20 15 0.23
21 49 0.77
ACGTcount: A:0.16, C:0.26, G:0.18, T:0.40
Consensus pattern (21 bp):
TCGCGTTGCGATTTTCCCAAT
Found at i:6421404 original size:2 final size:2
Alignment explanation
Indices: 6421397--6421433 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
6421387 GTGAAAATCA
6421397 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
6421434 ATATATATAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:6421438 original size:2 final size:2
Alignment explanation
Indices: 6421433--6421459 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
6421423 TCTCTCTCTC
6421433 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
6421460 GTCTGTGAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:6423765 original size:16 final size:17
Alignment explanation
Indices: 6423726--6423768 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
6423716 ATTAGGTTTG
**
6423726 ATTATAAAAATAAAATTT
1 ATTA-AAAAATAAAAAAT
6423744 ATTAAAAAATAAAAAAT
1 ATTAAAAAATAAAAAAT
6423761 A-TAAAAAA
1 ATTAAAAAA
6423769 AAATCATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 7 0.30
17 12 0.52
18 4 0.17
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (17 bp):
ATTAAAAAATAAAAAAT
Found at i:6424081 original size:16 final size:16
Alignment explanation
Indices: 6424060--6424098 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
6424050 GTCCTTAAAC
*
6424060 TAATTTTTTAATAATT
1 TAATTTTATAATAATT
*
6424076 TAATTTTATAATATTT
1 TAATTTTATAATAATT
6424092 TATATTT
1 TA-ATTT
6424099 AATGTATTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 16 0.80
17 4 0.20
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (16 bp):
TAATTTTATAATAATT
Found at i:6424177 original size:106 final size:103
Alignment explanation
Indices: 6424064--6424265 Score: 298
Period size: 106 Copynumber: 1.9 Consensus size: 103
6424054 TTAAACTAAT
*
6424064 TTTTTAATAATTTAATTTTATAATATTTTATATTTAATGTATTAAATATCTTAATAATTATTTAT
1 TTTTTAATAATTTAATTTTATAATATTTTATATTTAATGTATT-AA-AT-TTAATAATTATATAT
*
6424129 GGTTTATATTTAAAATTTAAGTACTATC-TTATTTATTTAAA
63 GGTTTAT-TTTAAAATTTAAATACTATCATTATTTATTTAAA
* *
6424170 TTTTTAATACTTTAATTTTATAATATTTTATATTTAATGTATTGAATTTAATAATTATATATGGT
1 TTTTTAATAATTTAATTTTATAATATTTTATATTTAATGTATTAAATTTAATAATTATATATGGT
** *
6424235 TTATTTTTCAATTTAAATATTATCATTATTT
66 TTATTTTAAAATTTAAATACTATCATTATTT
6424266 TAACAAAATT
Statistics
Matches: 88, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
102 16 0.18
103 27 0.31
104 2 0.02
105 1 0.01
106 42 0.48
ACGTcount: A:0.36, C:0.03, G:0.04, T:0.57
Consensus pattern (103 bp):
TTTTTAATAATTTAATTTTATAATATTTTATATTTAATGTATTAAATTTAATAATTATATATGGT
TTATTTTAAAATTTAAATACTATCATTATTTATTTAAA
Found at i:6424189 original size:22 final size:22
Alignment explanation
Indices: 6424164--6424207 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
6424154 ATCTTATTTA
6424164 TTTA-AAT-TTTTAATACTTTAAT
1 TTTATAATATTTT-ATA-TTTAAT
6424186 TTTATAATATTTTATATTTAAT
1 TTTATAATATTTTATATTTAAT
6424208 GTATTGAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 10 0.50
23 6 0.30
24 4 0.20
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.61
Consensus pattern (22 bp):
TTTATAATATTTTATATTTAAT
Found at i:6424314 original size:29 final size:30
Alignment explanation
Indices: 6424282--6424339 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
6424272 AATTAAATAA
*
6424282 GTCCTCAAACTT-TCTAAA-AAGTCAATTAG
1 GTCCTCAAACTTGT-TAAATAAATCAATTAG
6424311 GTCCTCAAACTTGTTAAATAAATCAATTA
1 GTCCTCAAACTTGTTAAATAAATCAATTA
6424340 AACTCATCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 16 0.62
30 10 0.38
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.33
Consensus pattern (30 bp):
GTCCTCAAACTTGTTAAATAAATCAATTAG
Found at i:6427363 original size:51 final size:50
Alignment explanation
Indices: 6427269--6427395 Score: 128
Period size: 51 Copynumber: 2.5 Consensus size: 50
6427259 TAAGCAGTAA
* ** * ** * *
6427269 AGCGCTCCCCCTGCACCGCGCTATACGATGATTTGGCGTCACGTGGGGTAT
1 AGCGCACCCCCTGCACCGCGCTATACGATGAGCTGACACCACGT-AGGAAT
*
6427320 AGCGCACCCCCTGCACCGCGCTATACGGTGAGCTGACACCACGTAGGAAT
1 AGCGCACCCCCTGCACCGCGCTATACGATGAGCTGACACCACGTAGGAAT
* * *
6427370 AGTGCGGCCCCCTGCAGCGCGCTATA
1 AGCGC-ACCCCCTGCACCGCGCTATA
6427396 TGCCACGTAG
Statistics
Matches: 63, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
50 8 0.13
51 55 0.87
ACGTcount: A:0.19, C:0.35, G:0.28, T:0.18
Consensus pattern (50 bp):
AGCGCACCCCCTGCACCGCGCTATACGATGAGCTGACACCACGTAGGAAT
Found at i:6427522 original size:46 final size:47
Alignment explanation
Indices: 6427409--6427527 Score: 152
Period size: 46 Copynumber: 2.5 Consensus size: 47
6427399 CACGTAGGGG
*
6427409 TATAGCGCGGATCAGGTACCGCGCTATACCTTTACTCCTGACATAATTTTA
1 TATAGCGCGGATCAGGTACCGCGCTATACCTTTA---C-AACATAATTTTA
**
6427460 TATAGCGCGGGGCAGGTACCGCGAC-ATACCTTTA-AACATAATTTTA
1 TATAGCGCGGATCAGGTACCGCG-CTATACCTTTACAACATAATTTTA
6427506 TATAGCGCGGATCAGGTACCGC
1 TATAGCGCGGATCAGGTACCGC
6427528 ATTTTGTATA
Statistics
Matches: 62, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
46 31 0.50
51 30 0.48
52 1 0.02
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (47 bp):
TATAGCGCGGATCAGGTACCGCGCTATACCTTTACAACATAATTTTA
Found at i:6429908 original size:110 final size:111
Alignment explanation
Indices: 6429714--6429934 Score: 390
Period size: 110 Copynumber: 2.0 Consensus size: 111
6429704 ATTACAAAAA
* *
6429714 TTAATTCTTAATCTAATAATCATGCATTAAATGAATCAACTAATTATTACTAATAATTTAAATTA
1 TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAAATATTACTAATAATTTAAATTA
*
6429779 AATTAAAACGTTAAAATGTTACCATATCAGCAAAGTGTCGAGATAT
66 AATTAAAACGTTAAAATGTTACCATATCAGCAAAGTGTAGAGATAT
6429825 TTAATTCTTAATCTAATAATCATGCATTAAATAAAT-AACTAAATATTACTAATAATTTAAATTA
1 TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAAATATTACTAATAATTTAAATTA
* *
6429889 AATTAAAACGTTAAAATGTTATCGTATCAGCAAAGTGTAGAGATAT
66 AATTAAAACGTTAAAATGTTACCATATCAGCAAAGTGTAGAGATAT
6429935 ATGATTTTCA
Statistics
Matches: 105, Mismatches: 5, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
110 70 0.67
111 35 0.33
ACGTcount: A:0.45, C:0.10, G:0.08, T:0.36
Consensus pattern (111 bp):
TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAAATATTACTAATAATTTAAATTA
AATTAAAACGTTAAAATGTTACCATATCAGCAAAGTGTAGAGATAT
Found at i:6434031 original size:31 final size:33
Alignment explanation
Indices: 6433976--6434037 Score: 92
Period size: 32 Copynumber: 1.9 Consensus size: 33
6433966 TTGTTAATAT
* *
6433976 TATTTTCAAATTGTTTGTAAAATGAT-TTTAAA
1 TATTTTCAAATTGATTATAAAATGATCTTTAAA
6434008 TATTTTCAAATT-ATTATAAAATGATCTTTA
1 TATTTTCAAATTGATTATAAAATGATCTTTA
6434038 GACTTATTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
31 11 0.41
32 16 0.59
ACGTcount: A:0.39, C:0.05, G:0.06, T:0.50
Consensus pattern (33 bp):
TATTTTCAAATTGATTATAAAATGATCTTTAAA
Found at i:6434502 original size:29 final size:29
Alignment explanation
Indices: 6434453--6434542 Score: 94
Period size: 30 Copynumber: 3.1 Consensus size: 29
6434443 TTTTTTCATT
* * *
6434453 TAAGTATGTAAAGTAATTTTTTGATCGAAA
1 TAAGTATCTAAA-TTATTTTTTGATCAAAA
*
6434483 TAAGTATTTAAATTTATTTTTTTG-TCAAAA
1 TAAGTATCTAAA-TTA-TTTTTTGATCAAAA
*
6434513 TCAGTATCTAAATTATTTTTT-ATCAAAA
1 TAAGTATCTAAATTATTTTTTGATCAAAA
6434541 TA
1 TA
6434543 GATACATAAA
Statistics
Matches: 51, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
28 13 0.25
29 3 0.06
30 28 0.55
31 7 0.14
ACGTcount: A:0.39, C:0.06, G:0.09, T:0.47
Consensus pattern (29 bp):
TAAGTATCTAAATTATTTTTTGATCAAAA
Found at i:6434557 original size:28 final size:28
Alignment explanation
Indices: 6434468--6434558 Score: 69
Period size: 28 Copynumber: 3.1 Consensus size: 28
6434458 ATGTAAAGTA
* * * *
6434468 ATTTTTTGATCGAAATAAGTATTTAAATTT
1 ATTTTTT-ATCAAAATCAGTATCTAAA-AT
* *
6434498 ATTTTTTTGTCAAAATCAGTATCTAAATT
1 A-TTTTTTATCAAAATCAGTATCTAAAAT
6434527 ATTTTTTATCAAAAT-AG-ATACATAAAAT
1 ATTTTTTATCAAAATCAGTAT-C-TAAAAT
6434555 ATTT
1 ATTT
6434559 AATTTTTTTA
Statistics
Matches: 52, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
26 2 0.04
27 3 0.06
28 22 0.42
29 3 0.06
30 16 0.31
31 6 0.12
ACGTcount: A:0.40, C:0.07, G:0.07, T:0.47
Consensus pattern (28 bp):
ATTTTTTATCAAAATCAGTATCTAAAAT
Found at i:6439548 original size:19 final size:21
Alignment explanation
Indices: 6439521--6439563 Score: 54
Period size: 19 Copynumber: 2.1 Consensus size: 21
6439511 GAAATTAGGG
*
6439521 TTTTCAAAGT-TTT-GAGAAT
1 TTTTCAAAGTATTTCGAAAAT
*
6439540 TTTTTAAAGTATTTCGAAAAT
1 TTTTCAAAGTATTTCGAAAAT
6439561 TTT
1 TTT
6439564 GTGTTTTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 9 0.45
20 3 0.15
21 8 0.40
ACGTcount: A:0.33, C:0.05, G:0.12, T:0.51
Consensus pattern (21 bp):
TTTTCAAAGTATTTCGAAAAT
Found at i:6439604 original size:19 final size:19
Alignment explanation
Indices: 6439569--6439606 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
6439559 ATTTTGTGTT
* *
6439569 TTTTTAAATATATTTTTAA
1 TTTTTAAATAAAATTTTAA
6439588 TTTTTAAATAAAATTTTAA
1 TTTTTAAATAAAATTTTAA
6439607 AAATATCAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (19 bp):
TTTTTAAATAAAATTTTAA
Found at i:6439838 original size:18 final size:18
Alignment explanation
Indices: 6439815--6439849 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
6439805 GACCCAAACC
6439815 AAAATAATATATTTATTA
1 AAAATAATATATTTATTA
* *
6439833 AAAATATTATTTTTATT
1 AAAATAATATATTTATT
6439850 CAATAAAAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
AAAATAATATATTTATTA
Found at i:6443617 original size:4 final size:4
Alignment explanation
Indices: 6441902--6443597 Score: 3043
Period size: 4 Copynumber: 428.5 Consensus size: 4
6441892 ATTATAATAC
6441902 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
6441950 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
6441998 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TG-- TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
6442044 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
6442092 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
6442140 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
6442188 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA T-GTA TGTA TGTA
6442237 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
6442285 TGTA TGTA TGTA TGTA TGTA TGTA -GTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
6442332 TGTA TGTA -GTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
6442379 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
6442427 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
6442475 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA T-TA -GTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
6442521 TGTA TGTA TGTA TGTA TGTA TGTA -GTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
6442568 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TG-- TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
6442614 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
6442662 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
6442710 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
6442758 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA -GTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
6442805 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
6442853 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TG-- TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
6442899 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
6442947 TGTA TGTA TGTA TG-- TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
6442993 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
6443041 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TG-- TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
6443087 TGTA TGTA -GTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
6443134 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
6443182 TGTA TGTA TGTA TGTA TGTA TG-- TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
6443228 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
6443276 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
* *
6443324 TGTA TGTA TGTA TGTA TGTA TGTA TGCA TGTA TGCA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
* * * *
6443372 TGTA TGTA TGTA TGCA TGTA TGCA TGTA TGCA TGTA TGTA TGCA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
* * * * *
6443420 TGCA TGTA TGCA TGTA TGCA TGTA TGTA TGTA TGTA TGTA TGCA TGCA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
* * * * * * *
6443468 TGCA TGCA TGTA TGTA TGTA TGTA TGTA TGCA TGCA TGCA TGCA TGCA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
* *
6443516 TGTA TGCA TGCA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
* * *
6443564 TGTA TGTA TGTA TGCA TGCA TGCA TGTA TGTA TG
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TG
6443598 CATGCATGCA
Statistics
Matches: 1646, Mismatches: 26, Indels: 40
0.96 0.02 0.02
Matches are distributed among these distances:
2 12 0.01
3 19 0.01
4 1611 0.98
5 4 0.00
ACGTcount: A:0.25, C:0.01, G:0.25, T:0.48
Consensus pattern (4 bp):
TGTA
Done.