Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000843.1 Hibiscus syriacus cultivar Beakdansim tig00001626_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47836

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1100--1159
31
2.0
30
83
6
77
35
8
21
35
1.84
6228--6352
31
4.0
31
88
2
180
40
22
17
20
1.92
6460--6575
59
2.0
59
82
3
144
29
19
7
43
1.79
8916--8967
20
2.6
20
84
0
77
26
34
13
25
1.93
8956--9022
20
3.3
20
68
4
53
29
23
17
28
1.97
9018--9084
20
3.3
20
79
8
82
40
25
16
17
1.90
8993--9104
40
2.8
40
80
10
147
40
25
16
18
1.91
9028--9164
60
2.3
59
79
13
163
40
21
16
22
1.91
9030--9164
20
6.8
20
70
16
100
40
21
15
22
1.91
9152--9203
20
2.7
19
84
3
59
38
21
7
32
1.82
10166--10219
24
2.2
24
90
0
81
18
14
20
46
1.84
12479--12514
18
2.0
18
94
0
63
55
25
2
16
1.55
14578--14615
4
9.5
4
88
0
58
71
2
0
26
1.00
16585--16638
20
2.7
19
80
8
63
46
20
16
16
1.84
17133--17213
41
2.0
41
85
4
110
22
12
23
41
1.87
17155--17265
20
5.5
20
77
2
114
18
13
26
42
1.87
17137--17265
61
2.1
61
85
2
170
20
11
25
42
1.85
17199--17285
40
2.2
40
87
8
124
17
14
27
40
1.89
17259--17305
20
2.3
20
100
0
94
19
19
27
34
1.96
26293--26317
12
2.1
12
100
0
50
40
8
20
32
1.81
27253--27510
93
2.8
93
80
2
279
39
8
14
37
1.77
27253--27510
92
2.8
90
79
6
266
39
8
14
37
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28793--28825
15
2.1
16
88
5
50
24
3
9
63
1.38
31812--31878
14
4.9
13
75
13
55
62
1
1
34
1.13
33228--33308
37
2.2
37
93
0
135
48
9
2
39
1.50
33610--33672
20
3.2
20
84
4
85
0
30
0
69
0.88
33605--33656
26
2.0
26
85
7
70
1
28
0
69
0.99
33718--33744
2
13.5
2
100
0
54
48
0
0
51
1.00
33867--34199
99
3.4
99
81
0
369
24
17
31
26
1.97
36736--36825
38
2.4
38
86
0
117
34
13
4
47
1.63
37763--37806
13
3.4
13
80
0
61
38
20
9
31
1.84
37767--37820
26
2.1
26
89
0
81
38
22
11
27
1.88
40183--40247
30
2.2
30
88
0
94
26
9
12
52
1.68
41038--41084
16
2.7
17
80
12
51
57
0
0
42
0.98
42950--43001
22
2.4
22
96
0
95
13
28
19
38
1.89

Tables:   1

The End!