genome.fa.s8431.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008431.1 Hibiscus syriacus cultivar Beakdansim tig00111221_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  198689

Tables:   1   

This is table  1  of  1  ( 102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
978--1022	22	2.1	22	92	8	76	40	26	4	28	1.75
4354--4392	18	2.2	18	90	0	60	33	30	25	10	1.89
4655--4720	16	4.1	16	75	14	64	22	1	24	51	1.57
4965--5044	25	3.6	25	65	26	70	35	0	38	26	1.57
4988--5054	20	3.3	20	66	25	59	34	0	43	22	1.54
4973--5056	41	2.0	42	97	2	161	34	0	39	26	1.57
4990--5057	21	3.3	21	64	32	56	32	0	45	22	1.52
8745--8786	18	2.3	19	79	4	50	23	14	0	61	1.32
8901--8964	3	21.3	3	81	12	78	34	0	0	65	0.93
19375--19415	5	8.2	5	86	7	57	82	2	14	0	0.76
19375--19421	15	3.4	14	82	8	60	82	2	14	0	0.75
19376--19420	23	2.0	23	82	8	56	82	2	15	0	0.77
22402--22477	14	5.4	14	72	14	59	23	6	0	69	1.11
22402--22452	27	1.9	26	88	4	75	23	5	0	70	1.09
22394--22448	9	6.2	9	73	10	51	23	3	0	72	1.00
22468--22510	19	2.3	19	80	8	52	23	13	0	62	1.31
22515--22563	25	2.0	25	87	0	71	36	6	2	55	1.37
22624--22676	3	17.3	3	80	3	61	35	0	1	62	1.06
22679--22725	17	2.7	17	78	12	51	12	6	2	78	1.02
22679--22745	34	1.9	36	85	11	95	14	5	2	76	1.10
35275--35350	20	3.7	20	94	3	125	19	26	25	28	1.99
36246--36288	17	2.6	16	78	7	50	39	25	0	34	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44621--44654	18	1.9	17	88	5	50	44	5	0	50	1.26
62470--62608	70	2.0	70	87	2	199	43	15	14	25	1.85
82753--82813	30	2.0	31	93	3	106	34	8	37	19	1.82
85969--86022	24	2.3	23	81	9	63	74	3	11	11	1.20
88431--88605	60	2.9	60	75	12	162	45	4	18	32	1.70
91816--91898	31	2.7	31	85	5	98	36	12	21	30	1.90
94643--95263	182	3.4	181	85	3	811	42	13	17	27	1.86
95229--95269	20	2.0	20	100	0	82	46	19	19	14	1.84
97053--97108	24	2.5	22	77	13	60	39	0	8	51	1.33
97380--97408	15	1.9	15	100	0	58	20	13	44	20	1.85
98086--98121	17	2.1	17	100	0	72	50	8	11	30	1.67
99268--99317	19	2.7	18	90	6	73	32	2	10	56	1.44
100145--100185	21	2.0	21	95	0	73	31	29	19	19	1.96
100191--100525	42	7.9	41	83	8	322	21	19	23	36	1.95
100192--100532	63	5.4	63	84	7	406	21	19	23	35	1.96
100191--100532	105	3.2	101	82	8	355	21	19	23	35	1.96
100191--100504	84	3.7	84	81	9	372	21	19	23	35	1.96
100622--100648	6	4.5	6	100	0	54	33	51	14	0	1.43
101414--101526	21	5.4	21	75	16	117	37	24	18	19	1.94
101410--101546	42	3.3	42	95	0	238	37	24	18	19	1.94
101407--101546	21	6.7	21	70	16	103	36	24	18	20	1.95
101738--102548	198	4.1	198	94	1	1432	36	16	16	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101743--102548	395	2.0	396	94	1	1431	36	16	16	31	1.91
102981--103032	15	3.5	15	89	0	68	19	44	1	34	1.62
104117--104174	6	9.7	6	86	0	53	44	1	31	22	1.63
104146--104175	3	10.0	3	100	0	60	33	0	33	33	1.58
105587--106304	201	3.6	200	84	5	878	40	16	13	30	1.86
106121--106479	177	2.0	175	95	1	637	43	15	11	29	1.83
110437--110484	23	2.1	23	88	0	69	39	16	8	35	1.79
110521--110565	23	2.0	23	95	0	81	37	20	8	33	1.83
110437--110598	87	1.9	87	92	0	270	33	13	11	41	1.80
111028--111547	198	2.6	197	80	6	595	38	14	15	31	1.88
111542--111704	87	1.9	87	92	2	274	31	14	12	41	1.82
111626--111670	23	2.0	23	90	0	72	40	20	6	33	1.78
112213--112243	14	2.2	14	94	0	53	19	38	3	38	1.68
118152--118209	23	2.5	23	88	0	80	43	6	15	34	1.74
122317--122885	199	2.8	200	84	4	700	34	13	15	37	1.86
122768--123465	199	3.5	199	90	2	1060	28	13	15	42	1.85
123271--123640	179	2.1	178	94	1	641	27	14	15	42	1.86
123629--123682	21	2.6	21	96	0	99	33	16	12	37	1.87
123917--123963	24	2.0	24	86	0	67	48	17	2	31	1.58
126540--126568	15	1.9	15	100	0	58	27	6	44	20	1.77
126912--128407	199	7.5	199	89	1	2264	27	14	15	41	1.87
126912--128407	397	3.8	396	91	1	2345	27	14	15	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126923--128406	596	2.5	595	90	1	2292	27	14	15	41	1.86
128780--128829	19	2.6	19	93	0	82	58	10	2	30	1.42
130920--130958	18	2.2	18	100	0	78	43	28	10	17	1.82
130995--131049	24	2.5	21	76	21	58	49	7	1	41	1.41
132303--132370	19	3.6	19	93	0	109	36	16	0	47	1.47
132756--133953	181	6.6	182	87	4	1678	27	15	13	43	1.84
132756--133954	361	3.3	362	92	2	1993	27	15	13	43	1.84
143604--143643	21	2.0	20	85	5	53	60	17	2	20	1.48
144046--144075	16	1.9	15	93	6	51	43	0	0	56	0.99
144201--144395	98	2.0	94	90	3	300	44	8	5	41	1.59
144403--144440	20	1.9	20	89	10	60	39	18	18	23	1.92
144946--145000	19	3.0	19	84	10	62	60	10	9	20	1.57
144960--144997	19	2.0	19	94	0	67	57	7	10	23	1.58
145004--145033	15	2.0	15	93	0	51	60	3	6	30	1.39
150555--150693	21	6.6	21	78	12	101	20	20	23	35	1.96
150593--150715	42	3.0	41	90	2	176	22	20	20	36	1.95
150554--150753	63	3.1	63	80	7	215	23	20	20	35	1.96
150580--150740	21	7.4	21	76	16	150	22	19	19	37	1.94
150690--150741	26	2.0	26	100	0	104	26	19	15	38	1.91
151428--151529	21	5.0	21	83	4	109	33	23	20	22	1.97
151556--151598	21	2.0	21	86	0	59	23	13	30	32	1.93
152746--152789	18	2.6	17	83	13	56	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154712--154773	3	20.7	3	100	0	124	66	0	0	33	0.92
164252--164311	2	30.0	2	100	0	120	50	0	0	50	1.00
167942--167967	13	2.0	13	100	0	52	84	0	15	0	0.62
181798--181912	3	38.0	3	87	1	167	34	1	0	62	1.11
181784--181910	12	10.8	11	84	11	62	32	3	0	63	1.15
183207--183235	7	4.1	7	100	0	58	41	0	13	44	1.44
184055--184098	18	2.4	18	76	0	52	25	0	2	72	0.96
184089--184125	15	2.7	15	88	12	53	24	5	8	62	1.44
195016--195063	18	2.8	18	90	6	73	29	6	6	58	1.47
195593--196197	51	11.8	52	93	3	1057	25	14	22	37	1.92
195593--196197	103	5.9	104	94	2	1057	25	14	22	37	1.92
196851--197355	112	4.4	113	87	6	668	37	13	20	28	1.91
197603--197688	3	29.0	3	82	6	104	34	2	1	61	1.16
198247--198274	1	28.0	1	100	0	56	100	0	0	0	0.00

Tables:   1

The End!