genome.fa.s8432.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008432.1 Hibiscus syriacus cultivar Beakdansim tig00111230_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  128903

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5131--5158	13	2.2	13	100	0	56	50	21	7	21	1.72
8600--8635	18	2.1	18	89	5	56	77	8	11	2	1.08
18647--18786	69	2.0	69	100	0	280	42	20	7	29	1.79
21786--21819	16	2.1	17	89	10	54	52	0	5	41	1.25
24446--24486	19	2.2	19	90	0	64	39	21	2	36	1.67
27191--27310	33	3.6	33	83	7	129	48	32	4	15	1.64
27591--27893	118	2.6	117	75	6	294	34	14	17	32	1.91
34186--34520	99	3.4	99	81	5	349	33	10	17	38	1.84
34186--34555	198	1.9	197	80	6	435	35	10	16	37	1.83
38493--38942	240	1.9	239	82	5	579	34	13	9	41	1.77
39716--39791	38	2.0	37	85	7	100	48	3	0	47	1.20
44078--44119	21	2.0	21	95	0	75	40	38	7	14	1.73
44211--44271	23	2.5	23	84	12	70	40	3	0	55	1.16
44211--44283	25	2.9	25	82	11	80	43	4	0	52	1.20
44437--44519	26	3.1	27	77	10	91	60	2	0	37	1.10
45022--45081	31	1.9	31	93	6	104	56	5	6	31	1.47
46711--46752	16	2.7	15	85	14	50	33	4	2	59	1.31
59413--59732	103	3.1	103	90	0	505	26	13	22	37	1.91
59750--59812	23	2.7	23	87	0	90	19	26	26	26	1.99
64159--64212	15	3.7	15	78	9	67	33	20	27	18	1.96
64157--64213	28	2.0	28	100	0	114	31	22	28	17	1.97
64963--65283	103	3.1	103	96	0	588	27	13	22	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65290--65367	23	3.3	23	78	5	77	23	20	23	33	1.97
69325--69485	42	3.8	42	80	4	173	29	24	16	29	1.96
69332--69485	84	1.8	84	82	8	197	29	24	16	28	1.97
69258--69484	126	1.8	126	81	1	285	31	24	15	28	1.95
71199--71267	28	2.5	28	95	0	120	68	2	7	21	1.28
71227--71288	18	3.3	19	73	11	56	72	1	8	17	1.17
71632--71662	14	2.2	14	100	0	62	45	12	0	41	1.42
71647--71951	83	3.7	83	87	5	401	43	12	3	39	1.61
79802--79850	21	2.3	21	89	0	71	6	38	10	44	1.63
79823--79887	21	3.1	21	90	0	94	3	40	7	49	1.47
79832--79898	21	3.2	21	91	4	100	5	38	5	49	1.52
81476--82089	262	2.4	255	86	8	818	41	20	12	26	1.87
84890--84927	15	2.6	15	83	4	51	52	0	0	47	1.00
85479--85503	2	12.5	2	100	0	50	52	0	0	48	1.00
87359--87982	182	3.4	182	92	0	1020	27	15	12	43	1.84
87861--88183	113	2.9	111	90	2	522	25	16	13	44	1.84
88255--88280	3	8.7	3	100	0	52	30	0	0	69	0.89
89595--89639	21	2.1	21	84	8	56	17	15	0	66	1.25
96984--97008	2	12.5	2	100	0	50	48	0	0	52	1.00
97129--97179	20	2.6	19	80	17	59	29	1	1	66	1.13
106344--107008	105	6.4	104	93	2	1079	33	26	17	22	1.96
107326--107357	3	10.7	3	100	0	64	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108672--108715	21	2.1	21	83	8	54	15	15	0	68	1.22
109486--109740	112	2.3	112	90	1	404	27	13	13	45	1.81
110213--110294	25	3.1	25	75	13	92	39	0	6	54	1.25
111248--111289	16	2.7	15	85	14	50	33	4	2	59	1.31
112416--112497	41	2.0	41	100	0	164	34	19	19	26	1.96
115016--115159	74	2.0	73	83	1	180	27	21	18	32	1.97
115567--115629	12	5.8	11	74	22	62	1	42	12	42	1.52
115567--115629	33	1.9	33	93	0	108	1	42	12	42	1.52

Tables:   1

The End!