Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008434.1 Hibiscus syriacus cultivar Beakdansim tig00111232_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  102403

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3241--3268
12
2.3
12
100
0
56
28
7
14
50
1.69
3568--3617
18
2.8
18
93
0
91
26
8
0
66
1.19
3734--3838
55
1.9
55
90
3
167
35
9
2
52
1.49
12413--12470
22
2.7
22
79
12
75
41
12
5
41
1.64
16608--16716
53
2.0
54
94
1
193
34
15
13
35
1.87
20738--20808
35
2.0
35
88
0
106
29
15
12
42
1.84
22337--22366
14
2.1
14
93
0
51
30
3
26
40
1.72
22943--23007
11
5.7
11
71
12
51
44
4
3
47
1.39
22947--23039
24
3.9
24
76
5
80
41
7
4
46
1.52
23021--23058
20
1.9
20
94
0
67
39
15
5
39
1.70
23050--23098
25
2.0
25
84
8
64
46
20
2
30
1.62
23493--23548
15
3.9
14
73
13
51
50
8
0
41
1.34
25108--25335
32
6.3
37
74
14
111
43
2
7
46
1.47
25070--25491
36
11.7
37
73
15
262
43
2
8
45
1.48
25070--25484
38
11.5
36
74
14
279
43
2
7
45
1.48
25136--25328
107
1.8
106
86
4
282
41
2
8
47
1.47
25539--25595
3
18.3
3
75
13
53
33
0
3
63
1.12
26963--26992
15
2.0
15
93
0
51
13
3
0
83
0.77
27029--27104
21
3.5
21
75
14
57
21
3
2
72
1.13
29888--29912
13
1.9
13
100
0
50
40
0
4
56
1.18
29818--30203
182
2.1
184
91
2
618
42
2
7
46
1.47
33058--33083
8
3.2
8
100
0
52
50
0
38
11
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34236--34283
22
2.2
22
85
7
62
39
0
4
56
1.19
35794--35838
2
22.5
2
100
0
90
51
0
0
48
1.00
38010--38134
31
4.0
31
82
10
139
21
16
21
40
1.92
38783--38827
11
4.1
11
85
0
63
26
20
26
26
1.99
39728--39820
20
4.7
20
91
0
132
31
25
25
17
1.97
39840--39921
23
3.7
23
91
6
125
20
18
39
21
1.93
40001--40062
31
2.0
31
87
6
90
46
14
6
32
1.70
43469--43529
31
2.0
31
90
3
97
42
16
6
34
1.74
46710--46782
20
3.7
20
88
0
101
36
21
23
17
1.94
46802--46880
23
3.7
21
77
14
81
20
18
37
22
1.94
46960--47020
31
2.0
31
96
3
115
42
18
6
32
1.76
47574--47600
14
1.9
14
100
0
54
62
0
37
0
0.95
58594--58662
22
3.1
22
93
0
111
17
39
24
18
1.92
63959--64023
34
1.9
34
87
0
94
26
23
1
49
1.59
68727--68802
16
4.5
17
68
8
57
36
18
19
25
1.94
68738--68801
16
3.9
16
70
13
58
35
17
21
25
1.95
71844--71912
32
2.2
32
83
0
84
28
30
20
20
1.97
71954--71991
15
2.4
17
91
8
62
28
31
26
13
1.93
72696--72721
7
3.7
7
100
0
52
15
0
0
84
0.62
73467--73584
60
2.0
60
83
6
150
36
16
16
31
1.90
74042--74299
127
2.0
125
95
3
462
40
23
10
25
1.86
76583--76638
20
2.8
20
94
0
94
26
26
8
37
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
83463--83510
18
2.5
19
83
6
62
29
27
14
29
1.95
87584--87629
20
2.3
20
92
0
74
50
2
26
21
1.60
88573--88640
23
3.0
23
88
0
91
20
26
26
26
1.99
89791--90254
149
3.1
148
96
1
847
35
20
15
28
1.93
96864--96907
23
1.9
23
90
0
70
27
25
25
22
2.00
96887--97192
151
2.0
149
94
2
542
35
20
15
29
1.93

Tables:   1

The End!