Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008436.1 Hibiscus syriacus cultivar Beakdansim tig00111234_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1066897
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
File 3 of 4
Found at i:628602 original size:15 final size:15
Alignment explanation
Indices: 628576--628614 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
628566 AATGCAGATG
628576 AAAATGCAAAAAGGCA
1 AAAATGC-AAAAGGCA
*
628592 AAAATGCAAAATGCA
1 AAAATGCAAAAGGCA
*
628607 AGAATGCA
1 AAAATGCA
628615 TGAAATGTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 14 0.67
16 7 0.33
ACGTcount: A:0.59, C:0.13, G:0.18, T:0.10
Consensus pattern (15 bp):
AAAATGCAAAAGGCA
Found at i:630009 original size:5 final size:5
Alignment explanation
Indices: 629999--630037 Score: 60
Period size: 5 Copynumber: 7.4 Consensus size: 5
629989 TGCAAGTGAT
629999 GAAAA GAAAA GAAAA GAAAA GAAAA GAAAGA TGAAAA GA
1 GAAAA GAAAA GAAAA GAAAA GAAAA GAAA-A -GAAAA GA
630038 GTTAGTGAGG
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
5 26 0.81
6 2 0.06
7 4 0.12
ACGTcount: A:0.74, C:0.00, G:0.23, T:0.03
Consensus pattern (5 bp):
GAAAA
Found at i:630019 original size:15 final size:17
Alignment explanation
Indices: 629996--630037 Score: 70
Period size: 15 Copynumber: 2.6 Consensus size: 17
629986 TGATGCAAGT
629996 GATGAAAAGAAAAGAAA
1 GATGAAAAGAAAAGAAA
630013 -A-GAAAAGAAAAGAAA
1 GATGAAAAGAAAAGAAA
630028 GATGAAAAGA
1 GATGAAAAGA
630038 GTTAGTGAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 14 0.61
16 2 0.09
17 7 0.30
ACGTcount: A:0.71, C:0.00, G:0.24, T:0.05
Consensus pattern (17 bp):
GATGAAAAGAAAAGAAA
Found at i:631358 original size:37 final size:37
Alignment explanation
Indices: 631313--631390 Score: 90
Period size: 37 Copynumber: 2.2 Consensus size: 37
631303 TATAGGATAA
*
631313 ATAT-AAAAAGAAAATAG-ATAAATAAATGAGTAAAAT
1 ATATAAAAAAGAAAA-AGCATAAATAAATAAGTAAAAT
* * *
631349 ATATAAAAAAGTAAAAGCATATATATATAAGTAAAAT
1 ATATAAAAAAGAAAAAGCATAAATAAATAAGTAAAAT
631386 A-ATAA
1 ATATAA
631391 TAATAAAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
36 10 0.28
37 26 0.72
ACGTcount: A:0.65, C:0.01, G:0.09, T:0.24
Consensus pattern (37 bp):
ATATAAAAAAGAAAAAGCATAAATAAATAAGTAAAAT
Found at i:631372 original size:20 final size:20
Alignment explanation
Indices: 631347--631384 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
631337 AATGAGTAAA
631347 ATATATAAAAAAGTAAAAGC
1 ATATATAAAAAAGTAAAAGC
* *
631367 ATATATATATAAGTAAAA
1 ATATATAAAAAAGTAAAA
631385 TAATAATAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.63, C:0.03, G:0.08, T:0.26
Consensus pattern (20 bp):
ATATATAAAAAAGTAAAAGC
Found at i:631882 original size:37 final size:37
Alignment explanation
Indices: 631841--631933 Score: 123
Period size: 37 Copynumber: 2.5 Consensus size: 37
631831 GTGCTTGTGG
* * *
631841 ATCCTATCTTTAGGAGTTTAAATAATAGTAGAACTCT
1 ATCCTATTTTTAGGAGTTTAAATAATAGCAAAACTCT
** *
631878 ATCCTATTTTTAGGAGTTTAAATCCTAGCAAAATTCT
1 ATCCTATTTTTAGGAGTTTAAATAATAGCAAAACTCT
*
631915 ATCCTATTTTTTGGAGTTT
1 ATCCTATTTTTAGGAGTTT
631934 GAATCCTAGT
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 49 1.00
ACGTcount: A:0.30, C:0.14, G:0.13, T:0.43
Consensus pattern (37 bp):
ATCCTATTTTTAGGAGTTTAAATAATAGCAAAACTCT
Found at i:635102 original size:8 final size:8
Alignment explanation
Indices: 635089--635137 Score: 57
Period size: 8 Copynumber: 6.4 Consensus size: 8
635079 GAGAATTATA
635089 TATATATG
1 TATATATG
635097 TATATATG
1 TATATATG
635105 --TATATG
1 TATATATG
*
635111 TATATATA
1 TATATATG
*
635119 TGTATATG
1 TATATATG
*
635127 TATGTATG
1 TATATATG
635135 TAT
1 TAT
635138 TTGACTTCTT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
6 6 0.18
8 28 0.82
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (8 bp):
TATATATG
Found at i:635102 original size:10 final size:10
Alignment explanation
Indices: 635085--635133 Score: 53
Period size: 10 Copynumber: 4.9 Consensus size: 10
635075 CCAAGAGAAT
*
635085 TATATATATA
1 TATATGTATA
* * *
635095 TGTATATATG
1 TATATGTATA
635105 TATATGTATA
1 TATATGTATA
635115 TATATGTATA
1 TATATGTATA
*
635125 TGTATGTAT
1 TATATGTAT
635134 GTATTTGACT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
10 33 1.00
ACGTcount: A:0.37, C:0.00, G:0.12, T:0.51
Consensus pattern (10 bp):
TATATGTATA
Found at i:635108 original size:14 final size:14
Alignment explanation
Indices: 635085--635137 Score: 70
Period size: 14 Copynumber: 3.6 Consensus size: 14
635075 CCAAGAGAAT
*
635085 TATATATATATGTA
1 TATATGTATATGTA
635099 TATATGTATATGTATA
1 TATATGTATATG--TA
635115 TATATGTATATGTA
1 TATATGTATATGTA
*
635129 TGTATGTAT
1 TATATGTAT
635138 TTGACTTCTT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
14 21 0.60
16 14 0.40
ACGTcount: A:0.36, C:0.00, G:0.13, T:0.51
Consensus pattern (14 bp):
TATATGTATATGTA
Found at i:635116 original size:16 final size:16
Alignment explanation
Indices: 635085--635129 Score: 67
Period size: 16 Copynumber: 2.9 Consensus size: 16
635075 CCAAGAGAAT
*
635085 TATATATATATG--TA
1 TATATGTATATGTATA
635099 TATATGTATATGTATA
1 TATATGTATATGTATA
635115 TATATGTATATGTAT
1 TATATGTATATGTAT
635130 GTATGTATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
14 11 0.39
16 17 0.61
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51
Consensus pattern (16 bp):
TATATGTATATGTATA
Found at i:640948 original size:14 final size:15
Alignment explanation
Indices: 640929--640957 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
640919 AAGCTTCAAA
640929 ATTTAA-TTATTAAT
1 ATTTAATTTATTAAT
640943 ATTTAATTTATTAAT
1 ATTTAATTTATTAAT
640958 CGATTAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
ATTTAATTTATTAAT
Found at i:644030 original size:265 final size:264
Alignment explanation
Indices: 643558--644091 Score: 1041
Period size: 265 Copynumber: 2.0 Consensus size: 264
643548 TTGAAACATT
643558 AATTTTGGTTTTAAAAACATGCAAATGTAGTTAAGCATATAATAAAACTTAATATAAAAAAATTA
1 AATTTTGGTTTTAAAAACATGCAAATGTAGTTAAGCATATAATAAAACTTAATATAAAAAAATTA
643623 CCCAAACTATAACAATTTTCTCATTTAGGTGTCTAAACTATTTTTCGAATATTCTAAGTGTCTAA
66 CCCAAACTATAACAATTTTCTCATTTAGGTGTCTAAACTATTTTTCGAATATTCTAAGTGTCTAA
*
643688 CGTTATAAATATTATCATTTTAAACCTAAAAAATTTAAGTTTATTCATTTTAAACCTCTTGAACG
131 CATTATAAATATTATCATTTTAAACCTAAAAAATTTAAGTTTATTCATTTTAAACCTCTTGAACG
643753 CGAATCTAATATTTTTGAACTTAATAAATCTAACCTAAGTATCTCAACTAAAACGAAACTATAAT
196 CGAATCTAATATTTTTGAACTTAATAAATCTAACCTAAGTATCTCAACTAAAACGAAACTATAAT
643818 AATA
261 AATA
643822 AATTTTGGTTTTAAAAACATGCAAATGTAGTTAAGCATATAATAAATACTTAATATAAAAAAATT
1 AATTTTGGTTTTAAAAACATGCAAATGTAGTTAAGCATATAATAAA-ACTTAATATAAAAAAATT
643887 ACCCAAACTATAACAATTTTCTCATTTAGGTGTCTAAACTATTTTTCGAATATTCTAAGTGTCTA
65 ACCCAAACTATAACAATTTTCTCATTTAGGTGTCTAAACTATTTTTCGAATATTCTAAGTGTCTA
643952 ACATTATAAATATTATCATTTTAAACCTAAAAAATTTAAGTTTATTCATTTTAAACCTCTTGAAC
130 ACATTATAAATATTATCATTTTAAACCTAAAAAATTTAAGTTTATTCATTTTAAACCTCTTGAAC
*
644017 GTGAATCTAATATTTTTGAACTTAATAAATCTAACCTAAGTATCTCAACTAAAACGAAACTATAA
195 GCGAATCTAATATTTTTGAACTTAATAAATCTAACCTAAGTATCTCAACTAAAACGAAACTATAA
644082 TAATA
260 TAATA
644087 AATTT
1 AATTT
644092 ATCATCAATA
Statistics
Matches: 267, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
264 46 0.17
265 221 0.83
ACGTcount: A:0.42, C:0.13, G:0.07, T:0.37
Consensus pattern (264 bp):
AATTTTGGTTTTAAAAACATGCAAATGTAGTTAAGCATATAATAAAACTTAATATAAAAAAATTA
CCCAAACTATAACAATTTTCTCATTTAGGTGTCTAAACTATTTTTCGAATATTCTAAGTGTCTAA
CATTATAAATATTATCATTTTAAACCTAAAAAATTTAAGTTTATTCATTTTAAACCTCTTGAACG
CGAATCTAATATTTTTGAACTTAATAAATCTAACCTAAGTATCTCAACTAAAACGAAACTATAAT
AATA
Found at i:644483 original size:26 final size:27
Alignment explanation
Indices: 644436--644488 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 27
644426 TTTATTACTT
* *
644436 TTATTATTTTAATAACATAATATTTTA
1 TTATTATTTTAATAACAAAATAATTTA
**
644463 TTATTA-TTTAATATTAAAATAATTTA
1 TTATTATTTTAATAACAAAATAATTTA
644489 AAATATAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
26 16 0.73
27 6 0.27
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (27 bp):
TTATTATTTTAATAACAAAATAATTTA
Found at i:644489 original size:16 final size:17
Alignment explanation
Indices: 644468--644501 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
644458 TTTTATTATT
*
644468 ATTTAATAT-TAAAATA
1 ATTTAAAATATAAAATA
644484 ATTTAAAATATAAAATA
1 ATTTAAAATATAAAATA
644501 A
1 A
644502 AATAGATGGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
ATTTAAAATATAAAATA
Found at i:646117 original size:2 final size:2
Alignment explanation
Indices: 646110--646139 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
646100 ATTGTACGTC
646110 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
646140 TAAGGGATGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:647286 original size:17 final size:18
Alignment explanation
Indices: 647249--647288 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
647239 AAACTTATTA
647249 AGGAAAATAAAGCAGAAG
1 AGGAAAATAAAGCAGAAG
647267 AGGAAAA-AAAG-AGAACG
1 AGGAAAATAAAGCAGAA-G
647284 AGGAA
1 AGGAA
647289 CATACTGACA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.19
17 10 0.48
18 7 0.33
ACGTcount: A:0.62, C:0.05, G:0.30, T:0.03
Consensus pattern (18 bp):
AGGAAAATAAAGCAGAAG
Found at i:647348 original size:2 final size:2
Alignment explanation
Indices: 647341--647405 Score: 130
Period size: 2 Copynumber: 32.5 Consensus size: 2
647331 TAGTAGAAAC
647341 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
647383 AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT A
647406 GAGAGAGAGA
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 63 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:647410 original size:2 final size:2
Alignment explanation
Indices: 647405--647437 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
647395 ATATATATAT
647405 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
647438 AGCATGATTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:663537 original size:24 final size:24
Alignment explanation
Indices: 663505--663570 Score: 78
Period size: 24 Copynumber: 2.8 Consensus size: 24
663495 GGTAAAATGA
*
663505 TAAATGAACACAAACTAACGAACG
1 TAAACGAACACAAACTAACGAACG
* * *
663529 TAAACGAACACAAACGAACGAGCT
1 TAAACGAACACAAACTAACGAACG
* *
663553 TAAACGAATATAAACTAA
1 TAAACGAACACAAACTAA
663571 AGGCATAAAA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.55, C:0.20, G:0.12, T:0.14
Consensus pattern (24 bp):
TAAACGAACACAAACTAACGAACG
Found at i:663689 original size:17 final size:16
Alignment explanation
Indices: 663662--663711 Score: 55
Period size: 17 Copynumber: 3.0 Consensus size: 16
663652 TATTTTTTAT
663662 TTGGGTTTAAAGTTAA
1 TTGGGTTTAAAGTTAA
* * *
663678 TTAGGTTTTAAAATATTA
1 TT-GGGTTTAAAGT-TAA
663696 TTGGGTTTAAAGTTAA
1 TTGGGTTTAAAGTTAA
663712 AATTTATTAG
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
16 4 0.15
17 18 0.69
18 4 0.15
ACGTcount: A:0.34, C:0.00, G:0.20, T:0.46
Consensus pattern (16 bp):
TTGGGTTTAAAGTTAA
Found at i:663789 original size:24 final size:24
Alignment explanation
Indices: 663757--663807 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
663747 AGATTGGGCT
663757 AAATATAAACGAACAAACATAAAC
1 AAATATAAACGAACAAACATAAAC
** *
663781 AAATATAAATTAACGAACATAAAC
1 AAATATAAACGAACAAACATAAAC
663805 AAA
1 AAA
663808 CAAATTATTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.67, C:0.14, G:0.04, T:0.16
Consensus pattern (24 bp):
AAATATAAACGAACAAACATAAAC
Found at i:667857 original size:109 final size:109
Alignment explanation
Indices: 667666--667885 Score: 422
Period size: 109 Copynumber: 2.0 Consensus size: 109
667656 GGAATTAATC
667666 ATTGCTTGCAAAAGAACCTCTTTCATCCATATCTGTTTTATTGTCATCATTTGCTGCTTTTTGCT
1 ATTGCTTGCAAAAGAACCTCTTTCATCCATATCTGTTTTATTGTCATCATTTGCTGCTTTTTGCT
667731 GATAAGGCTTATGCAAAACTACGATTTAAGCTGATAATAAATTA
66 GATAAGGCTTATGCAAAACTACGATTTAAGCTGATAATAAATTA
*
667775 ATTGCTTGCAAAAGAACCTCTTTCATCCATATCTGTTTTATTGTCTTCATTTGCTGCTTTTTGCT
1 ATTGCTTGCAAAAGAACCTCTTTCATCCATATCTGTTTTATTGTCATCATTTGCTGCTTTTTGCT
*
667840 GATAAGTCTTATGCAAAACTACGATTTAAGCTGATAATAAATTA
66 GATAAGGCTTATGCAAAACTACGATTTAAGCTGATAATAAATTA
667884 AT
1 AT
667886 ACCTGTTGAT
Statistics
Matches: 109, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
109 109 1.00
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.40
Consensus pattern (109 bp):
ATTGCTTGCAAAAGAACCTCTTTCATCCATATCTGTTTTATTGTCATCATTTGCTGCTTTTTGCT
GATAAGGCTTATGCAAAACTACGATTTAAGCTGATAATAAATTA
Found at i:684401 original size:2 final size:2
Alignment explanation
Indices: 684396--684442 Score: 85
Period size: 2 Copynumber: 23.5 Consensus size: 2
684386 TGAAGAGAGA
*
684396 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AG
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
684438 AT AT A
1 AT AT A
684443 AATGGTTTAG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (2 bp):
AT
Found at i:704409 original size:13 final size:13
Alignment explanation
Indices: 704391--704419 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
704381 CTTAAGCAAC
704391 ACAGATTGCAGTA
1 ACAGATTGCAGTA
704404 ACAGATTGCAGTA
1 ACAGATTGCAGTA
704417 ACA
1 ACA
704420 TTCTTGTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.41, C:0.17, G:0.21, T:0.21
Consensus pattern (13 bp):
ACAGATTGCAGTA
Found at i:710872 original size:154 final size:158
Alignment explanation
Indices: 710666--710978 Score: 589
Period size: 157 Copynumber: 2.0 Consensus size: 158
710656 ACCTTATTCA
710666 CAGACCAGAATGCAGGTTGGCTCATATATAGTTAGAATGGTCCTAATCTCCAGACAATAAACAAC
1 CAGACCAGAATGCAGGTTGGCTCA-ATATAGTTAGAATGGTCCTAATCTCCAGACAATAAACAAC
710731 ATCGAAAT-AACAACGAATTGTTG-AAGAACTA-TATAGTCCTAGTTTTGATATTTTATTCATCT
65 ATCGAAATAAACAACGAATTGTTGAAAGAACTATTATAGTCCTAGTTTTGATATTTTATTCATCT
710793 ACAAACAAAATAGGCAAACTTACAAAGTT
130 ACAAACAAAATAGGCAAACTTACAAAGTT
710822 CAGACCAGAATGCAGGTTGGCTC-ATATAGTTAGAATGGTCCTAATCTCCAGACAATAAACAACA
1 CAGACCAGAATGCAGGTTGGCTCAATATAGTTAGAATGGTCCTAATCTCCAGACAATAAACAACA
710886 TCGAAATAAACAACGAATTGTTGAAAGAACTATTATAGTCCTAGTTTTGATATTTTATTCATCTA
66 TCGAAATAAACAACGAATTGTTGAAAGAACTATTATAGTCCTAGTTTTGATATTTTATTCATCTA
710951 CAAACAAAATAGGCAAACTTACAAAGTT
131 CAAACAAAATAGGCAAACTTACAAAGTT
710979 TGCATGATGC
Statistics
Matches: 154, Mismatches: 0, Indels: 5
0.97 0.00 0.03
Matches are distributed among these distances:
154 48 0.31
155 15 0.10
156 31 0.20
157 60 0.39
ACGTcount: A:0.40, C:0.17, G:0.15, T:0.28
Consensus pattern (158 bp):
CAGACCAGAATGCAGGTTGGCTCAATATAGTTAGAATGGTCCTAATCTCCAGACAATAAACAACA
TCGAAATAAACAACGAATTGTTGAAAGAACTATTATAGTCCTAGTTTTGATATTTTATTCATCTA
CAAACAAAATAGGCAAACTTACAAAGTT
Found at i:713011 original size:60 final size:60
Alignment explanation
Indices: 712938--713050 Score: 147
Period size: 60 Copynumber: 1.9 Consensus size: 60
712928 TATTTGAATG
** * *
712938 AATTTAGAAATGAAATTAAAAGATTCAAAAGTTTGAGGATTAATTTAAAATGAATGTCAC
1 AATTTAGAAATGAAATTAAAAGATTCAAAAACTTGAAGACTAATTTAAAATGAATGTCAC
** *
712998 AATTTA-AGAATGAAATTGGAAGATTCAAAAACTTGAAGACTAATTTAGAATGA
1 AATTTAGA-AATGAAATTAAAAGATTCAAAAACTTGAAGACTAATTTAAAATGA
713051 TATCATAATA
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
59 1 0.02
60 44 0.98
ACGTcount: A:0.49, C:0.05, G:0.16, T:0.30
Consensus pattern (60 bp):
AATTTAGAAATGAAATTAAAAGATTCAAAAACTTGAAGACTAATTTAAAATGAATGTCAC
Found at i:713325 original size:32 final size:32
Alignment explanation
Indices: 713284--713352 Score: 102
Period size: 32 Copynumber: 2.2 Consensus size: 32
713274 AAACTAAATC
* *
713284 AATATTGAACCTAAACCGGCATTCATCCATAT
1 AATATTGAACCTAAACCAGCATTCATCAATAT
* *
713316 AATATTGAACCTAAATCAGTATTCATCAATAT
1 AATATTGAACCTAAACCAGCATTCATCAATAT
713348 AATAT
1 AATAT
713353 AATATAATAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.42, C:0.19, G:0.07, T:0.32
Consensus pattern (32 bp):
AATATTGAACCTAAACCAGCATTCATCAATAT
Found at i:713353 original size:5 final size:5
Alignment explanation
Indices: 713343--713439 Score: 194
Period size: 5 Copynumber: 19.4 Consensus size: 5
713333 AGTATTCATC
713343 AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT
1 AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT
713393 AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT AA
1 AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT AA
713440 ACTTTACAAG
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 92 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
AATAT
Found at i:717508 original size:5 final size:5
Alignment explanation
Indices: 717493--717528 Score: 63
Period size: 5 Copynumber: 7.0 Consensus size: 5
717483 ATGCCAACAA
717493 TAATAT TAATT TAATT TAATT TAATT TAATT TAATT
1 TAAT-T TAATT TAATT TAATT TAATT TAATT TAATT
717529 GACATGATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 26 0.87
6 4 0.13
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
TAATT
Found at i:719418 original size:2 final size:2
Alignment explanation
Indices: 719411--719449 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
719401 TTGGGTTTTA
719411 AT AT AT AT AT AT AT AT AT AT AT -T AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
719450 CTATTTTATG
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:719701 original size:150 final size:153
Alignment explanation
Indices: 719434--719734 Score: 423
Period size: 150 Copynumber: 2.0 Consensus size: 153
719424 TATATATATT
* *
719434 ATATATATATATATATCTATTTTATGTTTATTTTTAAATATAAATATTTTAAATTTTATAAAGGT
1 ATATATATATATATATCAATTTTAAGTTTATTTTTAAATATAAATATTTTAAATTTTATAAA-G-
* * * * * *
719499 GACATATTTTATTTAACGATAGAATTAACAACGATAACAATCCATAAATCTAAAATAATAATGTT
64 GACATATATCATTTAACGATAAAATTAACAACAATAACAATCCAAAAATCTAAAATAATAATGAT
719564 TATAACATTA-GACACATAAATTTTA
129 TATAACATTATG-CACATAAATTTTA
719589 ATATATATATATATAT-AATTTTAAGTTTATTTTTTAAATAT-AATATTTT-AATTTTATAAA-G
1 ATATATATATATATATCAATTTTAAGTTTA-TTTTTAAATATAAATATTTTAAATTTTATAAAGG
* * *
719650 ATATATATCATTTAACGATAAAATTAATAACAATAGCAATCCAAAAATCTAAAATAATAATGATT
65 ACATATATCATTTAACGATAAAATTAACAACAATAACAATCCAAAAATCTAAAATAATAATGATT
*
719715 ATAATATTATGCACATAAAT
130 ATAACATTATGCACATAAAT
719735 ATCCCAAAAA
Statistics
Matches: 132, Mismatches: 12, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
150 74 0.56
151 1 0.01
153 11 0.08
154 19 0.14
155 27 0.20
ACGTcount: A:0.47, C:0.07, G:0.05, T:0.42
Consensus pattern (153 bp):
ATATATATATATATATCAATTTTAAGTTTATTTTTAAATATAAATATTTTAAATTTTATAAAGGA
CATATATCATTTAACGATAAAATTAACAACAATAACAATCCAAAAATCTAAAATAATAATGATTA
TAACATTATGCACATAAATTTTA
Found at i:721896 original size:30 final size:30
Alignment explanation
Indices: 721860--721919 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
721850 TGGAGTTATT
721860 GGGGGCATATTAGGAAGTTTGTATAATTTC
1 GGGGGCATATTAGGAAGTTTGTATAATTTC
721890 GGGGGCATATTAGGAAGTTTGTATAATTTC
1 GGGGGCATATTAGGAAGTTTGTATAATTTC
721920 CTTTTAATCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.27, C:0.07, G:0.30, T:0.37
Consensus pattern (30 bp):
GGGGGCATATTAGGAAGTTTGTATAATTTC
Found at i:728286 original size:11 final size:12
Alignment explanation
Indices: 728262--728290 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
728252 TGTTACATTC
728262 AAAATATTTATA
1 AAAATATTTATA
728274 AAAATATTT-TA
1 AAAATATTTATA
728285 AAAATA
1 AAAATA
728291 AAAAATATTC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 8 0.47
12 9 0.53
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (12 bp):
AAAATATTTATA
Found at i:734559 original size:12 final size:12
Alignment explanation
Indices: 734542--734566 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
734532 AATATTTAGC
734542 GAGAGGGAGAGA
1 GAGAGGGAGAGA
734554 GAGAGGGAGAGA
1 GAGAGGGAGAGA
734566 G
1 G
734567 CATTTTGTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.60, T:0.00
Consensus pattern (12 bp):
GAGAGGGAGAGA
Found at i:750220 original size:3 final size:3
Alignment explanation
Indices: 750214--750262 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
750204 CAACAACAAC
750214 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
750262 A
1 A
750263 TTTCTCTTCT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:751754 original size:2 final size:2
Alignment explanation
Indices: 751747--751775 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
751737 TCTGTCAATG
751747 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
751776 CACAGAGAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:751784 original size:2 final size:2
Alignment explanation
Indices: 751779--751807 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
751769 ATATATACAC
751779 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
751808 TGTTCAAGCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:754813 original size:349 final size:340
Alignment explanation
Indices: 754107--754859 Score: 1053
Period size: 340 Copynumber: 2.2 Consensus size: 340
754097 GTAAATCATT
* * * *
754107 GAATATGGA-TAAAGAATGAAGAGTATGATCCATTCTCTTGGTTTTAATCGAGAGACTTTATTAG
1 GAATATGGAGTAAA-AATGAAGAGTTTGATCCCTTCTCTCGGTCTTAATCGAGAGACTTTATTAG
* *
754171 TACTGGTGTCAACTATAATTTTGTTATCATTACTTGTAGATTGATAGTCTTAGTAGATATGATCA
65 TACTGGTGTCAACTATAAGTTTATTATCATTACTTGTAGATTGATAGTCTTAGTAGATATGATCA
** * * *
754236 CTAACAATAGATTTAACGTGCTTGAATGAACCTTGAGAAAACCGCATGCGCGATGGATCGTGTGT
130 CTAACAATAGATTTAACACGCTTGAAAGAACATTGAGAAAACCGCATACGCGATGGATCGTGTGT
*
754301 TGCAACGAGGAGATGGTTTTGAGATATGTTGATAAAATGGATCACGACGGTTAGAAACAATTCAT
195 TGCAACGAGGAGATGGTTTTGAGATATGTTGATAAAATGGATCACAACGGTTAGAAACAATTCAT
* * *
754366 CCCTTTTTAATTTGGGTGGGAGTGGTAAGTCATTGACAAGTGTCAAGATTCTCTGTCTTCATGAA
260 CCCTTTTTAATTTGGGTGGGAGTGGTAAGTCATAGACAAGTGCCAAGATTCTCTATCTTCATGAA
**
754431 GAGATAGAAAATGATT
325 GAGATAGAAAATGACC
* * * *
754447 GAATAAGTAGGAAAAATGAAGAGTTTGATCCCTTCTCTCGGTCTTAATCTAGAGACTTTATTAGT
1 GAATATGGAGTAAAAATGAAGAGTTTGATCCCTTCTCTCGGTCTTAATCGAGAGACTTTATTAGT
* * *
754512 ACTTGTGTCGACTATAAGTTTATTATCATTA-TTCGTAGGTTGATAGTCTTAGTAGATATGATCA
66 ACTGGTGTCAACTATAAGTTTATTATCATTACTT-GTAGATTGATAGTCTTAGTAGATATGATC-
* * * * *
754576 ATTGATAATAGATTTAACCAACGCTTGAAAGAACATTGGGAATACCGTCATACGCGATGGATCGT
129 ACTAACAATAGATTTAA-C-ACGCTTGAAAGAACATTGAGAAAACCG-CATACGCGATGGATCGT
**
754641 GTGTTGCAACGAGGAGATGGTTTTGAGATATGTTGATAAGACAAATGGATCACAACGGTTAGAGG
191 GTGTTGCAACGAGGAGATGGTTTTGAGATATGTTGAT---A-AAATGGATCACAACGGTTAGAAA
** *
754706 CGGTTCATCCCTTTTTAATTTGGGTGGAGAGTTGTAAGTCATAGACAAGTGCCAAGATTCTCTAT
252 CAATTCATCCCTTTTTAATTTGGGTGG-GAGTGGTAAGTCATAGACAAGTGCCAAGATTCTCTAT
754771 CTTCATGAAGAGATAGAAAATGACC
316 CTTCATGAAGAGATAGAAAATGACC
* * *
754796 GAATATGGAGTAAAAATGAAGAGTTTTAACCCTTCTCTCGATCTTAATCGAGAGAC-TTATTAGT
1 GAATATGGAGTAAAAATGAAGAGTTTGATCCCTTCTCTCGGTCTTAATCGAGAGACTTTATTAGT
754860 GAGATGTGTT
Statistics
Matches: 361, Mismatches: 41, Indels: 14
0.87 0.10 0.03
Matches are distributed among these distances:
339 2 0.01
340 108 0.30
341 17 0.05
342 1 0.00
343 21 0.06
344 53 0.15
347 1 0.00
348 53 0.15
349 105 0.29
ACGTcount: A:0.32, C:0.13, G:0.23, T:0.33
Consensus pattern (340 bp):
GAATATGGAGTAAAAATGAAGAGTTTGATCCCTTCTCTCGGTCTTAATCGAGAGACTTTATTAGT
ACTGGTGTCAACTATAAGTTTATTATCATTACTTGTAGATTGATAGTCTTAGTAGATATGATCAC
TAACAATAGATTTAACACGCTTGAAAGAACATTGAGAAAACCGCATACGCGATGGATCGTGTGTT
GCAACGAGGAGATGGTTTTGAGATATGTTGATAAAATGGATCACAACGGTTAGAAACAATTCATC
CCTTTTTAATTTGGGTGGGAGTGGTAAGTCATAGACAAGTGCCAAGATTCTCTATCTTCATGAAG
AGATAGAAAATGACC
Found at i:755008 original size:195 final size:195
Alignment explanation
Indices: 754664--755250 Score: 886
Period size: 195 Copynumber: 3.0 Consensus size: 195
754654 GAGATGGTTT
* *
754664 TGAGATATGTTGATAAGACAAATGGATCACAACGGTTAGAGGCGGTTCATCCCTTTTTAATTTGG
1 TGAGATGTGTTGATAAGACAAATGGATCACGACGGTTAGAGGCGGTTCATCCCTTTTTAATTTGG
754729 GTGGAGAGTTGTAAGTCATAGACAAGTGCCAAGATTCTCTATCTTCATGAAGAGATAGAAAATGA
66 GTGGAGAGTTGTAAGTCATAGACAAGTGCCAAGATTCTCTATCTTCATGAAGAGATAGAAAATGA
*
754794 CCGAATATGGAGTAAAAATGAAGAGTTTTAACCCTTCTCTCGATCTTAATCGAGAGACTTATTAG
131 CCGAATATGGAGGAAAAATGAAGAGTTTTAACCCTTCTCTCGATCTTAATCGAGAGACTTATTAG
754859 TGAGATGTGTTGATAAGACAAATGGATCACGACGGTTAGAGGCGGTTCATCCCTTTTTAATTTGG
1 TGAGATGTGTTGATAAGACAAATGGATCACGACGGTTAGAGGCGGTTCATCCCTTTTTAATTTGG
* *
754924 GCGGAGAGTTGTAAGTCATAGACAAGTGCCAAGATTTTCTATCTTCATGAAGAGATAGAAAATGA
66 GTGGAGAGTTGTAAGTCATAGACAAGTGCCAAGATTCTCTATCTTCATGAAGAGATAGAAAATGA
*
754989 CCGAATATGGAGGAAAAATGAAGAGTTTTAACCCTTCTCTCAATCTTAATCGAGAGACTTATTAG
131 CCGAATATGGAGGAAAAATGAAGAGTTTTAACCCTTCTCTCGATCTTAATCGAGAGACTTATTAG
* * * * * **
755054 TGAGATGTGTTGATAAGACATACGGATTACGATGGTTAGAGTCAATTCATCCCTTTTTAATTTGG
1 TGAGATGTGTTGATAAGACAAATGGATCACGACGGTTAGAGGCGGTTCATCCCTTTTTAATTTGG
* * * * * * *
755119 GTGGAGAGTCGTAAGTCATTGATAAGTGTCAAGATTCTCTGTCTTCATGAAGAGATAGACAAGGA
66 GTGGAGAGTTGTAAGTCATAGACAAGTGCCAAGATTCTCTATCTTCATGAAGAGATAGAAAATGA
** * * * * * * * * *
755184 TTGAATATGAAGGAAGAATGAAGAGTTTGATCCATTATCTCGGTTTTAATCGAGAGATTTTATTA
131 CCGAATATGGAGGAAAAATGAAGAGTTTTAACCCTTCTCTCGATCTTAATCGAGAGA-CTTATTA
755249 G
195 G
755250 T
1 T
755251 ACTGGTGACG
Statistics
Matches: 357, Mismatches: 34, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
195 349 0.98
196 8 0.02
ACGTcount: A:0.32, C:0.13, G:0.24, T:0.31
Consensus pattern (195 bp):
TGAGATGTGTTGATAAGACAAATGGATCACGACGGTTAGAGGCGGTTCATCCCTTTTTAATTTGG
GTGGAGAGTTGTAAGTCATAGACAAGTGCCAAGATTCTCTATCTTCATGAAGAGATAGAAAATGA
CCGAATATGGAGGAAAAATGAAGAGTTTTAACCCTTCTCTCGATCTTAATCGAGAGACTTATTAG
Found at i:763040 original size:45 final size:45
Alignment explanation
Indices: 762991--763104 Score: 183
Period size: 45 Copynumber: 2.5 Consensus size: 45
762981 ATTCGATCAG
* * * * *
762991 ATTTATTTGTATATATTTTTTGTTCGAGTTATGATCTTTTGTCAA
1 ATTTATTCGTATTTATCTTTTGTTCGAGTTATGACCCTTTGTCAA
763036 ATTTATTCGTATTTATCTTTTGTTCGAGTTATGACCCTTTGTCAA
1 ATTTATTCGTATTTATCTTTTGTTCGAGTTATGACCCTTTGTCAA
763081 ATTTATTCGTATTTATCTTTTGTT
1 ATTTATTCGTATTTATCTTTTGTT
763105 TAATTATAAA
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 64 1.00
ACGTcount: A:0.20, C:0.11, G:0.12, T:0.57
Consensus pattern (45 bp):
ATTTATTCGTATTTATCTTTTGTTCGAGTTATGACCCTTTGTCAA
Found at i:764140 original size:29 final size:31
Alignment explanation
Indices: 764108--764189 Score: 73
Period size: 34 Copynumber: 2.6 Consensus size: 31
764098 AACCTTTTTT
764108 ATATTTTTAATTTTGTAAA-AAAAT-TATAA
1 ATATTTTTAATTTTGTAAAGAAAATATATAA
764137 ATATTATGAATTTAATTTT-TAAAGAAAATATATAA
1 ATA-T-T---TTTAATTTTGTAAAGAAAATATATAA
*
764172 AT-TTTTTACAATTTGTAA
1 ATATTTTTA-ATTTTGTAA
764190 TATTATACAA
Statistics
Matches: 43, Mismatches: 1, Indels: 16
0.72 0.02 0.27
Matches are distributed among these distances:
29 7 0.16
30 5 0.12
31 4 0.09
32 1 0.02
33 5 0.12
34 14 0.33
35 7 0.16
ACGTcount: A:0.46, C:0.01, G:0.05, T:0.48
Consensus pattern (31 bp):
ATATTTTTAATTTTGTAAAGAAAATATATAA
Found at i:767176 original size:21 final size:21
Alignment explanation
Indices: 767151--767191 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
767141 TTGTGAACAG
*
767151 TGCTACAGTACATCGATGCAT
1 TGCTACAGTACACCGATGCAT
*
767172 TGCTACAGTGCACCGATGCA
1 TGCTACAGTACACCGATGCA
767192 CTAAAATTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (21 bp):
TGCTACAGTACACCGATGCAT
Found at i:769399 original size:20 final size:20
Alignment explanation
Indices: 769370--769462 Score: 114
Period size: 20 Copynumber: 4.6 Consensus size: 20
769360 TTTCCCAATT
*
769370 CGCAATGCGAATAAGTAAAA
1 CGCAACGCGAATAAGTAAAA
** *
769390 CGCAACGCGAATTGGGAAAA
1 CGCAACGCGAATAAGTAAAA
*
769410 TCGCAACGCGAATAAGTAAAT
1 -CGCAACGCGAATAAGTAAAA
*
769431 CGCAACGCGAATAAGTAAAT
1 CGCAACGCGAATAAGTAAAA
*
769451 CACAACGCGAAT
1 CGCAACGCGAAT
769463 TGGGAAAATC
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
20 47 0.75
21 16 0.25
ACGTcount: A:0.44, C:0.20, G:0.22, T:0.14
Consensus pattern (20 bp):
CGCAACGCGAATAAGTAAAA
Found at i:769495 original size:20 final size:19
Alignment explanation
Indices: 769470--769584 Score: 68
Period size: 20 Copynumber: 5.7 Consensus size: 19
769460 AATTGGGAAA
* *
769470 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATAAT-ACT
* *
769490 ATCGCAATGCGATAATACAAA
1 ATCGCAACGCGATAATAC--T
* *
769511 ATCGCAACGAGATATTTACT
1 ATCGCAACGCGATA-ATACT
* **
769531 TTCGCAACGCGATTCTGACT
1 ATCGCAACGCGATAAT-ACT
*
769551 TTCGCAACGCGATAATACAT
1 ATCGCAACGCGATAATAC-T
*
769571 AATCGCAATGCGAT
1 -ATCGCAACGCGAT
769585 TTTCAAAGCG
Statistics
Matches: 75, Mismatches: 14, Indels: 11
0.75 0.14 0.11
Matches are distributed among these distances:
19 5 0.07
20 44 0.59
21 23 0.31
22 3 0.04
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.25
Consensus pattern (19 bp):
ATCGCAACGCGATAATACT
Found at i:769780 original size:22 final size:22
Alignment explanation
Indices: 769752--769795 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
769742 CACTCTCTCA
769752 CCCATCTCCGACGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
*
769774 CCCATCTCCGGCGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
769796 TATCTCCATC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.20, C:0.45, G:0.16, T:0.18
Consensus pattern (22 bp):
CCCATCTCCGACGAAATCCGTC
Found at i:770097 original size:20 final size:20
Alignment explanation
Indices: 770058--770116 Score: 64
Period size: 20 Copynumber: 3.0 Consensus size: 20
770048 GCGATTCTCT
**
770058 CGTTGCGATAGTCAAATTCG
1 CGTTGCGATAGTCATTTTCG
*
770078 CGTTGTGATAGTCATTTTCG
1 CGTTGCGATAGTCATTTTCG
* **
770098 TGTTGCGATTTTCATTTTC
1 CGTTGCGATAGTCATTTTC
770117 AGAAACTATT
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.17, C:0.17, G:0.22, T:0.44
Consensus pattern (20 bp):
CGTTGCGATAGTCATTTTCG
Found at i:771457 original size:18 final size:18
Alignment explanation
Indices: 771436--771480 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
771426 TCCACTTCGG
*
771436 GAGCCATCACCTCGCCCA
1 GAGCCATCACCTCACCCA
*
771454 GAGCTATCACCTCACCCA
1 GAGCCATCACCTCACCCA
771472 GAGCCATCA
1 GAGCCATCA
771481 TCTGATCGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.27, C:0.44, G:0.16, T:0.13
Consensus pattern (18 bp):
GAGCCATCACCTCACCCA
Found at i:771981 original size:20 final size:20
Alignment explanation
Indices: 771956--772001 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
771946 TAGTTTACTT
771956 TCGCAACACGAAAATGACTA
1 TCGCAACACGAAAATGACTA
* * *
771976 TCGCAACGCGGAAATGGCTA
1 TCGCAACACGAAAATGACTA
771996 TCGCAA
1 TCGCAA
772002 TGCGAAATGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.37, C:0.26, G:0.22, T:0.15
Consensus pattern (20 bp):
TCGCAACACGAAAATGACTA
Found at i:772010 original size:19 final size:19
Alignment explanation
Indices: 771967--772025 Score: 73
Period size: 19 Copynumber: 3.1 Consensus size: 19
771957 CGCAACACGA
*
771967 AAATGACTATCGCAACGCGG
1 AAATGACTATCGCAATGC-G
*
771987 AAATGGCTATCGCAATGCG
1 AAATGACTATCGCAATGCG
**
772006 AAATGAAAATCGCAATGCG
1 AAATGACTATCGCAATGCG
772025 A
1 A
772026 TTTTGTCGTT
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
19 18 0.53
20 16 0.47
ACGTcount: A:0.39, C:0.20, G:0.24, T:0.17
Consensus pattern (19 bp):
AAATGACTATCGCAATGCG
Found at i:772078 original size:20 final size:19
Alignment explanation
Indices: 772044--772099 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 19
772034 TTGCGATTTT
*
772044 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
772063 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
772083 CATTTTCGCGTTGCGAT
1 CA-TTTCGCGTTGCGAT
772100 TTTAAGTTTC
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
19 5 0.15
20 25 0.76
21 3 0.09
ACGTcount: A:0.16, C:0.25, G:0.23, T:0.36
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:773982 original size:14 final size:14
Alignment explanation
Indices: 773963--773998 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
773953 ATTGTTTAAT
773963 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
* *
773977 TGATTTGTAAATGT
1 TGATTTGTAAAAGA
773991 TGATTTGT
1 TGATTTGT
773999 TTAATTGATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.47
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:774170 original size:19 final size:19
Alignment explanation
Indices: 774115--774163 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
774105 ATCGCAACGA
774115 GAAAATCGCAATGCGAAAT
1 GAAAATCGCAATGCGAAAT
*
774134 GAAAATTGCAATGCGAAAT
1 GAAAATCGCAATGCGAAAT
774153 GAAAATCGCAA
1 GAAAATCGCAA
774164 CGAGAAAATC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.49, C:0.14, G:0.20, T:0.16
Consensus pattern (19 bp):
GAAAATCGCAATGCGAAAT
Found at i:774226 original size:20 final size:20
Alignment explanation
Indices: 774201--774238 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
774191 TTGCATTGCG
* *
774201 ATTTTCTCGTTGCGATAGCC
1 ATTTTCGCGTTGCAATAGCC
774221 ATTTTCGCGTTGCAATAG
1 ATTTTCGCGTTGCAATAG
774239 TCAAATGAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.21, G:0.21, T:0.39
Consensus pattern (20 bp):
ATTTTCGCGTTGCAATAGCC
Found at i:775339 original size:24 final size:24
Alignment explanation
Indices: 775288--775341 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
775278 GTATTCGAAA
* * *
775288 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATATTGGTCAATACACAGAC
*
775312 TTTGATATTGGTCAATACACAGAT
1 TTTGATATTGGTCAATACACAGAC
775336 TTTGAT
1 TTTGAT
775342 GATGTTTCAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.39
Consensus pattern (24 bp):
TTTGATATTGGTCAATACACAGAC
Found at i:777797 original size:19 final size:19
Alignment explanation
Indices: 777775--777905 Score: 85
Period size: 19 Copynumber: 7.7 Consensus size: 19
777765 GGAAATTACT
777775 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
777794 ATCGCAAT--G--A-GAGA
1 ATCGCAATGCGAAATGAAA
777808 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
* *
777827 ATCGCAA--CG--CT-AAT
1 ATCGCAATGCGAAATGAAA
* * *
777841 TTCGTAATGTGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
777860 ATCGCAA--CG-AA-G-GA
1 ATCGCAATGCGAAATGAAA
777874 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
777893 ATCGCAACGCGAA
1 ATCGCAATGCGAA
777906 TTTAATTTCG
Statistics
Matches: 82, Mismatches: 15, Indels: 30
0.65 0.12 0.24
Matches are distributed among these distances:
14 26 0.32
15 3 0.04
16 6 0.07
17 6 0.07
18 3 0.04
19 38 0.46
ACGTcount: A:0.44, C:0.18, G:0.22, T:0.17
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:777817 original size:33 final size:32
Alignment explanation
Indices: 777775--777901 Score: 166
Period size: 33 Copynumber: 3.9 Consensus size: 32
777765 GGAAATTACT
*
777775 ATCGCAATGCGAAATGAAAATCGCAATGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGA-AGA
*
777808 ATCGCAATGCGAAATGAAAATCGCAACGCTAA-T
1 ATCGCAATGCGAAATGAAAATCGCAACG--AAGA
* * *
777841 TTCGTAATGTGAAATGAAAATCGCAACGAAGGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAA-GA
777874 ATCGCAATGCGAAATGAAAATCGCAACG
1 ATCGCAATGCGAAATGAAAATCGCAACG
777902 CGAATTTAAT
Statistics
Matches: 81, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
31 2 0.02
33 77 0.95
34 1 0.01
35 1 0.01
ACGTcount: A:0.43, C:0.17, G:0.22, T:0.17
Consensus pattern (32 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAAGA
Found at i:777891 original size:66 final size:66
Alignment explanation
Indices: 777780--777908 Score: 215
Period size: 66 Copynumber: 2.0 Consensus size: 66
777770 TTACTATCGC
* *
777780 AATGCGAAATGAAAATCGCAATGAGAGAATCGCAATGCGAAATGAAAATCGCAACGCTAATTTCG
1 AATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGCGAATTTCG
777845 T
66 T
*
777846 AATGTGAAATGAAAATCGCAACGA-AGGAATCGCAATGCGAAATGAAAATCGCAACGCGAATTT
1 AATGCGAAATGAAAATCGCAACGAGA-GAATCGCAATGCGAAATGAAAATCGCAACGCGAATTT
777909 AATTTCGCGT
Statistics
Matches: 59, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
65 1 0.02
66 58 0.98
ACGTcount: A:0.43, C:0.16, G:0.22, T:0.19
Consensus pattern (66 bp):
AATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGCGAATTTCG
T
Found at i:778102 original size:14 final size:14
Alignment explanation
Indices: 778083--778119 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
778073 CATCAATTAA
778083 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
778097 ACAAATCACCTTTT
1 ACAAATCAACTTTT
778111 ACAAATCAA
1 ACAAATCAA
778120 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.24, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:779535 original size:42 final size:41
Alignment explanation
Indices: 779476--779678 Score: 167
Period size: 42 Copynumber: 4.8 Consensus size: 41
779466 GTGAATCGGG
* **
779476 CTCTTGAATGGTGGGAGGGACCTCTTCAACAATGACAGTGGC
1 CTCTTGAACGGTGGGAGGGA-CTCTTCAGGAATGACAGTGGC
* *
779518 CTCTTGAACGGTGGGAGGGGACTC-TCGAGGAATGATAGGGGC
1 CTCTTGAACGGTGGGA-GGGACTCTTC-AGGAATGACAGTGGC
* * * * * *
779560 CTCTTCAATGATAGGAGTGGACTCTTGAGGGATGACAGTGGC
1 CTCTTGAACGGTGGGAG-GGACTCTTCAGGAATGACAGTGGC
* *
779602 CTCTTGAACGGTGGGAGGGGACTC-TCGAGGAATGATAGGGGC
1 CTCTTGAACGGTGGGA-GGGACTCTTC-AGGAATGACAGTGGC
* * * * *
779644 CTCTTCAACGATAGGAGTGGACTCTTGAGGGATGA
1 CTCTTGAACGGTGGGAG-GGACTCTTCAGGAATGA
779679 AAGGCGAGTC
Statistics
Matches: 127, Mismatches: 26, Indels: 16
0.75 0.15 0.09
Matches are distributed among these distances:
41 5 0.04
42 115 0.91
43 7 0.06
ACGTcount: A:0.23, C:0.18, G:0.36, T:0.23
Consensus pattern (41 bp):
CTCTTGAACGGTGGGAGGGACTCTTCAGGAATGACAGTGGC
Found at i:779617 original size:84 final size:84
Alignment explanation
Indices: 779507--779678 Score: 335
Period size: 84 Copynumber: 2.0 Consensus size: 84
779497 CTCTTCAACA
*
779507 ATGACAGTGGCCTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGGGGCCTCTTCAATGAT
1 ATGACAGTGGCCTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGGGGCCTCTTCAACGAT
779572 AGGAGTGGACTCTTGAGGG
66 AGGAGTGGACTCTTGAGGG
779591 ATGACAGTGGCCTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGGGGCCTCTTCAACGAT
1 ATGACAGTGGCCTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGGGGCCTCTTCAACGAT
779656 AGGAGTGGACTCTTGAGGG
66 AGGAGTGGACTCTTGAGGG
779675 ATGA
1 ATGA
779679 AAGGCGAGTC
Statistics
Matches: 87, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
84 87 1.00
ACGTcount: A:0.23, C:0.17, G:0.38, T:0.22
Consensus pattern (84 bp):
ATGACAGTGGCCTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGGGGCCTCTTCAACGAT
AGGAGTGGACTCTTGAGGG
Found at i:780079 original size:91 final size:90
Alignment explanation
Indices: 779898--780084 Score: 277
Period size: 91 Copynumber: 2.0 Consensus size: 90
779888 ATATTTCAAA
* *
779898 ACTTCAACCAAAAGATAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGTTTA
1 ACTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTT--A-AATAAACAGTTTA
779963 GCAGAATTGGCAGCAACCGAATAAATTT
63 GCAGAATTGGCAGCAACCGAATAAATTT
779991 ACTTCAACCAAAAGACAAAACAAAAAGACAAATACTAACTTCACAGTGTT-AATAAACAGTTTAG
1 ACTTCAACCAAAAGACAAAAC--AAAGACAAATACTAACTTCACAGTGTTAAATAAACAGTTTAG
* * *
780055 CAGTATTGGCAGTAATCGAATAAATTT
64 CAGAATTGGCAGCAACCGAATAAATTT
780082 ACT
1 ACT
780085 AAGCAATCTA
Statistics
Matches: 87, Mismatches: 5, Indels: 6
0.89 0.05 0.06
Matches are distributed among these distances:
91 40 0.46
93 20 0.23
95 27 0.31
ACGTcount: A:0.47, C:0.18, G:0.12, T:0.23
Consensus pattern (90 bp):
ACTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAATAAACAGTTTAGCA
GAATTGGCAGCAACCGAATAAATTT
Found at i:780370 original size:63 final size:63
Alignment explanation
Indices: 780251--780381 Score: 253
Period size: 63 Copynumber: 2.1 Consensus size: 63
780241 TAAAGTAGAC
780251 ACCTCCACACGCCATGCACCATCGTTATCGCGTAGAGTACCGATCTCCTAACGCAAGGCATTG
1 ACCTCCACACGCCATGCACCATCGTTATCGCGTAGAGTACCGATCTCCTAACGCAAGGCATTG
*
780314 ACCTCCACACGCCATGCACCATCGTTATCGCGTAGAGTACCGATCTCCTCACGCAAGGCATTG
1 ACCTCCACACGCCATGCACCATCGTTATCGCGTAGAGTACCGATCTCCTAACGCAAGGCATTG
780377 ACCTC
1 ACCTC
780382 ATCACGTAAC
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
63 67 1.00
ACGTcount: A:0.24, C:0.37, G:0.18, T:0.21
Consensus pattern (63 bp):
ACCTCCACACGCCATGCACCATCGTTATCGCGTAGAGTACCGATCTCCTAACGCAAGGCATTG
Found at i:781869 original size:20 final size:19
Alignment explanation
Indices: 781834--781954 Score: 100
Period size: 19 Copynumber: 6.8 Consensus size: 19
781824 TCTTTGTGTT
781834 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGA
* * *
781853 GATAATGAGAATTGCAACGT
1 GA-AATGAAAATCGCAACGA
**
781873 GAAATGACTATCGCAACGA
1 GAAATGAAAATCGCAACGA
*
781892 G--A-G--AATCGCAACGC
1 GAAATGAAAATCGCAACGA
781906 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGA
*
781925 G--A-G--AATCGCAACGC
1 GAAATGAAAATCGCAACGA
781939 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
781955 TGCGATTTTG
Statistics
Matches: 80, Mismatches: 11, Indels: 22
0.71 0.10 0.19
Matches are distributed among these distances:
14 21 0.26
16 4 0.05
17 4 0.05
19 35 0.44
20 16 0.20
ACGTcount: A:0.45, C:0.18, G:0.23, T:0.13
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGA
Found at i:781876 original size:39 final size:36
Alignment explanation
Indices: 781833--781954 Score: 130
Period size: 33 Copynumber: 3.5 Consensus size: 36
781823 GTCTTTGTGT
*
781833 TGAAATGAAAATCGCAACGAGATAATGAGAATTGCAACG
1 TGAAATGAAAATCGCAACGAG--AA-GAGAATCGCAACG
**
781872 TGAAATGACTATCGCAAC--G-AGAGAATCGCAACG
1 TGAAATGAAAATCGCAACGAGAAGAGAATCGCAACG
*
781905 CGAAATGAAAATCGCAAC--G-AGAGAATCGCAACG
1 TGAAATGAAAATCGCAACGAGAAGAGAATCGCAACG
*
781938 CGAAATGAAAATCGCAA
1 TGAAATGAAAATCGCAA
781955 TGCGATTTTG
Statistics
Matches: 77, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
33 59 0.77
34 1 0.01
37 1 0.01
39 16 0.21
ACGTcount: A:0.45, C:0.18, G:0.23, T:0.14
Consensus pattern (36 bp):
TGAAATGAAAATCGCAACGAGAAGAGAATCGCAACG
Found at i:781896 original size:33 final size:33
Alignment explanation
Indices: 781859--781954 Score: 156
Period size: 33 Copynumber: 2.9 Consensus size: 33
781849 ACGAGATAAT
* * **
781859 GAGAATTGCAACGTGAAATGACTATCGCAACGA
1 GAGAATCGCAACGCGAAATGAAAATCGCAACGA
781892 GAGAATCGCAACGCGAAATGAAAATCGCAACGA
1 GAGAATCGCAACGCGAAATGAAAATCGCAACGA
781925 GAGAATCGCAACGCGAAATGAAAATCGCAA
1 GAGAATCGCAACGCGAAATGAAAATCGCAA
781955 TGCGATTTTG
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 59 1.00
ACGTcount: A:0.44, C:0.20, G:0.24, T:0.12
Consensus pattern (33 bp):
GAGAATCGCAACGCGAAATGAAAATCGCAACGA
Found at i:781901 original size:14 final size:14
Alignment explanation
Indices: 781882--781937 Score: 58
Period size: 14 Copynumber: 3.6 Consensus size: 14
781872 TGAAATGACT
781882 ATCGCAACGAGAGA
1 ATCGCAACGAGAGA
*
781896 ATCGCAACGCGAAATGAAA
1 ATCGCAA--CG--A-GAGA
781915 ATCGCAACGAGAGA
1 ATCGCAACGAGAGA
781929 ATCGCAACG
1 ATCGCAACG
781938 CGAAATGAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
14 19 0.54
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.29
ACGTcount: A:0.43, C:0.23, G:0.25, T:0.09
Consensus pattern (14 bp):
ATCGCAACGAGAGA
Found at i:781971 original size:19 final size:19
Alignment explanation
Indices: 781949--781999 Score: 57
Period size: 19 Copynumber: 2.7 Consensus size: 19
781939 GAAATGAAAA
* *
781949 TCGCAATGCGATTTTGGTT
1 TCGCATTGCGATTTTGATT
* * *
781968 TCGCGTTGCGTTTTTTATT
1 TCGCATTGCGATTTTGATT
781987 TCGCATTGCGATT
1 TCGCATTGCGATT
782000 CTCTCGTTGC
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.12, C:0.18, G:0.24, T:0.47
Consensus pattern (19 bp):
TCGCATTGCGATTTTGATT
Found at i:782577 original size:20 final size:20
Alignment explanation
Indices: 782552--782604 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
782542 GCGCTATGTA
782552 AATCGCGTTGCGAAAGTCAG
1 AATCGCGTTGCGAAAGTCAG
* *
782572 AATCGCATTACGAAAGTCAG
1 AATCGCGTTGCGAAAGTCAG
* *
782592 TATCTCGTTGCGA
1 AATCGCGTTGCGA
782605 TTTTGTATTA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (20 bp):
AATCGCGTTGCGAAAGTCAG
Found at i:782642 original size:20 final size:20
Alignment explanation
Indices: 782617--782666 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
782607 TTGTATTATT
782617 GCATTGCGATAGTAAGTATC
1 GCATTGCGATAGTAAGTATC
* *
782637 GCATTGCGATAGTCATTATC
1 GCATTGCGATAGTAAGTATC
782657 GCATTGCGAT
1 GCATTGCGAT
782667 TTTCCCAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (20 bp):
GCATTGCGATAGTAAGTATC
Found at i:782685 original size:61 final size:61
Alignment explanation
Indices: 782554--782687 Score: 137
Period size: 61 Copynumber: 2.2 Consensus size: 61
782544 GCTATGTAAA
* * * * **
782554 TCGCGTTGCGAAAGTCAGAATCGCATTACGAAAGTCAGTATCTCGTTGCGATTTTGTATTAT
1 TCGCGTTGCGATAGTAAGAATCGCATTACGAAAGTCAGTATCGCATTGCGATTTTCCA-TAT
* * * * *
782616 T-GCATTGCGATAGTAAGTATCGCATTGCGATAGTCATTATCGCATTGCGATTTTCCCA-AT
1 TCGCGTTGCGATAGTAAGAATCGCATTACGAAAGTCAGTATCGCATTGCGATTTT-CCATAT
782676 TCGCGTTGCGAT
1 TCGCGTTGCGAT
782688 TTACTTATTC
Statistics
Matches: 58, Mismatches: 12, Indels: 5
0.77 0.16 0.07
Matches are distributed among these distances:
60 3 0.05
61 53 0.91
62 2 0.03
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.34
Consensus pattern (61 bp):
TCGCGTTGCGATAGTAAGAATCGCATTACGAAAGTCAGTATCGCATTGCGATTTTCCATAT
Found at i:782777 original size:21 final size:21
Alignment explanation
Indices: 782737--782777 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
782727 ACTGTAGACC
**
782737 ATCGCAACGCGATTTCCAACT
1 ATCGCAACGCGAAATCCAACT
*
782758 ATCGCAACGCGAAATGCAAC
1 ATCGCAACGCGAAATCCAAC
782778 GCGAATTTGC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.34, C:0.32, G:0.17, T:0.17
Consensus pattern (21 bp):
ATCGCAACGCGAAATCCAACT
Found at i:788152 original size:2 final size:2
Alignment explanation
Indices: 788145--788179 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
788135 ATCATTTATG
788145 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
788180 ATAGTATGTT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:798882 original size:32 final size:32
Alignment explanation
Indices: 798840--798914 Score: 141
Period size: 32 Copynumber: 2.3 Consensus size: 32
798830 CTATTGAATT
*
798840 TTTTTAGATTTTACATGTTCTACTCTGGGGTA
1 TTTTTGGATTTTACATGTTCTACTCTGGGGTA
798872 TTTTTGGATTTTACATGTTCTACTCTGGGGTA
1 TTTTTGGATTTTACATGTTCTACTCTGGGGTA
798904 TTTTTGGATTT
1 TTTTTGGATTT
798915 GAGGTTATTA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 42 1.00
ACGTcount: A:0.16, C:0.11, G:0.20, T:0.53
Consensus pattern (32 bp):
TTTTTGGATTTTACATGTTCTACTCTGGGGTA
Found at i:806386 original size:32 final size:31
Alignment explanation
Indices: 806312--806388 Score: 82
Period size: 31 Copynumber: 2.5 Consensus size: 31
806302 CTAATATGAC
* * *
806312 TCTTAGGTAGGCTCTGCGGCCCTGAGATCAT
1 TCTTAGGTAGGCCCTACGGCCCTAAGATCAT
** **
806343 TCTCGGGTAGGCCCTACGGCCCTAAGATGTGT
1 TCTTAGGTAGGCCCTACGGCCCTAAGAT-CAT
806375 TCTTAGGTAGGCCC
1 TCTTAGGTAGGCCC
806389 CGTGGCCTCA
Statistics
Matches: 36, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
31 23 0.64
32 13 0.36
ACGTcount: A:0.16, C:0.27, G:0.30, T:0.27
Consensus pattern (31 bp):
TCTTAGGTAGGCCCTACGGCCCTAAGATCAT
Found at i:811076 original size:17 final size:17
Alignment explanation
Indices: 811054--811086 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
811044 AAGATATAGA
811054 TTAAAT-TGATAGAGTTT
1 TTAAATATGA-AGAGTTT
811071 TTAAATATGAAGAGTT
1 TTAAATATGAAGAGTT
811087 AAATTTTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 12 0.80
18 3 0.20
ACGTcount: A:0.39, C:0.00, G:0.18, T:0.42
Consensus pattern (17 bp):
TTAAATATGAAGAGTTT
Found at i:811264 original size:29 final size:28
Alignment explanation
Indices: 811197--811276 Score: 126
Period size: 29 Copynumber: 2.9 Consensus size: 28
811187 TATTAAATCT
*
811197 TCCGACTATTAAAAGTTAC-AAATATAC
1 TCCGACTATTAAAAGTTACAAAATAAAC
*
811224 TCAGACTATTAAAAGTTACAAAATAGAAC
1 TCCGACTATTAAAAGTTACAAAATA-AAC
811253 TCCGACTATTAAAAGTTACAAAAT
1 TCCGACTATTAAAAGTTACAAAAT
811277 GATCCATCGA
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
27 18 0.38
28 5 0.10
29 25 0.52
ACGTcount: A:0.47, C:0.16, G:0.09, T:0.28
Consensus pattern (28 bp):
TCCGACTATTAAAAGTTACAAAATAAAC
Found at i:811287 original size:29 final size:28
Alignment explanation
Indices: 811199--811290 Score: 118
Period size: 29 Copynumber: 3.2 Consensus size: 28
811189 TTAAATCTTC
811199 CGACTATTAAAAGTTAC-AAAT-ATACT
1 CGACTATTAAAAGTTACAAAATGATACT
811225 CAGACTATTAAAAGTTACAAAATAGA-ACT
1 C-GACTATTAAAAGTTACAAAAT-GATACT
*
811254 CCGACTATTAAAAGTTACAAAATGATCCAT
1 -CGACTATTAAAAGTTACAAAATGATAC-T
811284 CGACTAT
1 CGACTAT
811291 AGGGCACTAT
Statistics
Matches: 58, Mismatches: 1, Indels: 11
0.83 0.01 0.16
Matches are distributed among these distances:
26 1 0.02
27 16 0.28
28 6 0.10
29 32 0.55
30 3 0.05
ACGTcount: A:0.46, C:0.17, G:0.10, T:0.27
Consensus pattern (28 bp):
CGACTATTAAAAGTTACAAAATGATACT
Found at i:812046 original size:16 final size:18
Alignment explanation
Indices: 812025--812061 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
812015 ACTTGTTTAG
812025 ATTAAT-TATTTATTT-T
1 ATTAATCTATTTATTTGT
*
812041 ATTAATCTTTTTATTTGT
1 ATTAATCTATTTATTTGT
812059 ATT
1 ATT
812062 CTTTTTATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 6 0.33
17 8 0.44
18 4 0.22
ACGTcount: A:0.27, C:0.03, G:0.03, T:0.68
Consensus pattern (18 bp):
ATTAATCTATTTATTTGT
Found at i:812412 original size:23 final size:23
Alignment explanation
Indices: 812384--812430 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
812374 CGTTTGGTAA
*
812384 TATGTTCGTTCATTTATGTTCAT
1 TATGTTCGTTCATTTATGTGCAT
*
812407 TATGTTCGTTCGTTTATGTGCAT
1 TATGTTCGTTCATTTATGTGCAT
812430 T
1 T
812431 CATTAAAGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.15, C:0.13, G:0.17, T:0.55
Consensus pattern (23 bp):
TATGTTCGTTCATTTATGTGCAT
Found at i:812640 original size:24 final size:24
Alignment explanation
Indices: 812596--812650 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 24
812586 TGTTCATTTA
* *
812596 TTGTGTTCGCTTACGTTCGTTCAT
1 TTGTGTTCGCTTACATCCGTTCAT
* *
812620 TTGTGTTCGTTTACATCCGTTCGT
1 TTGTGTTCGCTTACATCCGTTCAT
*
812644 TTTTGTT
1 TTGTGTT
812651 TTCTTTTATC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.07, C:0.18, G:0.20, T:0.55
Consensus pattern (24 bp):
TTGTGTTCGCTTACATCCGTTCAT
Found at i:813375 original size:29 final size:29
Alignment explanation
Indices: 813318--813375 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
813308 GTGTTGGTCG
* *
813318 TAGGTCGCCATGCCTTCCGGGTGACCTAC
1 TAGGTCGCCATGCCTTCCCGGCGACCTAC
* *
813347 TAGGTCGCCATGTCTTCCCGGCGAGCTAC
1 TAGGTCGCCATGCCTTCCCGGCGACCTAC
813376 AAGAGATTGC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.14, C:0.34, G:0.28, T:0.24
Consensus pattern (29 bp):
TAGGTCGCCATGCCTTCCCGGCGACCTAC
Found at i:813428 original size:10 final size:10
Alignment explanation
Indices: 813415--813485 Score: 65
Period size: 10 Copynumber: 6.7 Consensus size: 10
813405 ACACGCTGGG
813415 CATCCGAGGC
1 CATCCGAGGC
813425 CATCCGACCAAGGC
1 CATCCG----AGGC
813439 CATCCGAGAG-
1 CATCCGAG-GC
813449 CATCCGAGGC
1 CATCCGAGGC
813459 CATCCGAGAG-
1 CATCCGAG-GC
*
813469 CATCCGAGGT
1 CATCCGAGGC
813479 CATCCGA
1 CATCCGA
813486 CCGAGGCTAT
Statistics
Matches: 53, Mismatches: 0, Indels: 16
0.77 0.00 0.23
Matches are distributed among these distances:
9 2 0.04
10 39 0.74
11 2 0.04
14 10 0.19
ACGTcount: A:0.25, C:0.37, G:0.27, T:0.11
Consensus pattern (10 bp):
CATCCGAGGC
Found at i:813460 original size:20 final size:20
Alignment explanation
Indices: 813435--813485 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
813425 CATCCGACCA
813435 AGGCCATCCGAGAGCATCCG
1 AGGCCATCCGAGAGCATCCG
813455 AGGCCATCCGAGAGCATCCG
1 AGGCCATCCGAGAGCATCCG
*
813475 AGGTCATCCGA
1 AGGCCATCCGA
813486 CCGAGGCTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.25, C:0.33, G:0.29, T:0.12
Consensus pattern (20 bp):
AGGCCATCCGAGAGCATCCG
Found at i:813545 original size:23 final size:24
Alignment explanation
Indices: 813494--813546 Score: 83
Period size: 23 Copynumber: 2.3 Consensus size: 24
813484 GACCGAGGCT
*
813494 ATCCGAACGAGCTATGCGAGGGCA
1 ATCCGAGCGAGCTATGCGAGGGCA
813518 A-CCGAGCGAGCTATGCGAGGG-A
1 ATCCGAGCGAGCTATGCGAGGGCA
813540 ATCCGAG
1 ATCCGAG
813547 GGAAGCCGAG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
22 2 0.07
23 24 0.89
24 1 0.04
ACGTcount: A:0.28, C:0.25, G:0.36, T:0.11
Consensus pattern (24 bp):
ATCCGAGCGAGCTATGCGAGGGCA
Found at i:813649 original size:29 final size:29
Alignment explanation
Indices: 813566--813649 Score: 132
Period size: 29 Copynumber: 2.9 Consensus size: 29
813556 GCGAGGGTAG
* * *
813566 GTCGCCCGGAGTGCATGGCGACCTACAAG
1 GTCGCCCGGAGGGCATGGCGACCTATAAA
*
813595 GTCGCCCGGAAGGCATGGCGACCTATAAA
1 GTCGCCCGGAGGGCATGGCGACCTATAAA
813624 GTCGCCCGGAGGGCATGGCGACCTAT
1 GTCGCCCGGAGGGCATGGCGACCTAT
813650 GTGTTGGGAC
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 50 1.00
ACGTcount: A:0.21, C:0.30, G:0.35, T:0.14
Consensus pattern (29 bp):
GTCGCCCGGAGGGCATGGCGACCTATAAA
Found at i:825612 original size:19 final size:19
Alignment explanation
Indices: 825590--825629 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
825580 GAATAAATAA
825590 AAAATAATCTAATATTTTC
1 AAAATAATCTAATATTTTC
*
825609 AAAATATTCTAATATTTTC
1 AAAATAATCTAATATTTTC
825628 AA
1 AA
825630 TTAAAGAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.47, C:0.10, G:0.00, T:0.42
Consensus pattern (19 bp):
AAAATAATCTAATATTTTC
Found at i:826197 original size:19 final size:19
Alignment explanation
Indices: 826175--826211 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
826165 TTTTCTAAAT
*
826175 ATAATATTTAATATAAAAC
1 ATAATATCTAATATAAAAC
*
826194 ATAATATCTATTATAAAA
1 ATAATATCTAATATAAAA
826212 ATATAATAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (19 bp):
ATAATATCTAATATAAAAC
Found at i:830298 original size:3 final size:3
Alignment explanation
Indices: 830292--830347 Score: 76
Period size: 3 Copynumber: 17.3 Consensus size: 3
830282 CACCCCCAGG
830292 TCT TCT TCT TCCT TCTT TCTT TCT TCT TCCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT T-CT TC-T TC-T TCT TCT T-CT TCT TCT TCT TCT TCT TCT
830341 TCT TCT T
1 TCT TCT T
830348 TGAGACAAAA
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
3 37 0.74
4 13 0.26
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:836690 original size:159 final size:158
Alignment explanation
Indices: 836214--836686 Score: 773
Period size: 153 Copynumber: 3.0 Consensus size: 158
836204 AAAGATGATC
*
836214 AAAATACTCGAATCTAAAGAATCTCGACCCGACCTTACAAAAGCAGTTTTTTTAAAATTTTAAAA
1 AAAATACTCGAATCTAACGAATCTCGACCCGACCTTACAAAAGCAGTTTTTTTAAAATTTTAAAA
*
836279 AATCAATCCGACCCAACCTGGTATAAATTATTCTATC--TATATATATACACG--TATACCCGGC
66 AATCAATCCGACCCAACCTGGTATAAATTATTATATCTATATATATATACACGTATATACCCGGC
836340 TCCGTCCCACCCTGATCCCTAAAATTTT
131 TCCGTCCCACCCTGATCCCTAAAATTTT
* * * *
836368 -AAATACTTGAATCTAACAAATCTTGACCCGACCTTACAAAAGTAGTTTTTTTAAAATTTTAAAA
1 AAAATACTCGAATCTAACGAATCTCGACCCGACCTTACAAAAGCAGTTTTTTTAAAATTTTAAAA
836432 AATCAATCCGACCCAACCTGGTATAAATTATTATTCTATCTATATATATATACACGTATATACCC
66 AATCAATCCGACCCAACCTGGTATAAATTATTA---TATCTATATATATATACACGTATATACCC
*
836497 -GTTCCGTCCCACCCTGATCCCTAAAATTTT
128 GGCTCCGTCCCACCCTGATCCCTAAAATTTT
*
836527 AAAATACTCGAATCTTACGAATCTCGACCCGACCTTACAAAAGCAGTTTTTTT-AAATTTTAAAA
1 AAAATACTCGAATCTAACGAATCTCGACCCGACCTTACAAAAGCAGTTTTTTTAAAATTTTAAAA
836591 AATCAATCCGACCCAACCTGGTATAAATTATTAT-TCTATATATATATACACGTATATACCCGGC
66 AATCAATCCGACCCAACCTGGTATAAATTATTATATCTATATATATATACACGTATATACCCGGC
* *
836655 TACGTCCCACCCTGAACCCTAAAATTTT
131 TCCGTCCCACCCTGATCCCTAAAATTTT
836683 AAAA
1 AAAA
836687 AAATTACTTT
Statistics
Matches: 295, Mismatches: 15, Indels: 16
0.90 0.05 0.05
Matches are distributed among these distances:
153 91 0.31
155 27 0.09
156 36 0.12
158 14 0.05
159 73 0.25
160 54 0.18
ACGTcount: A:0.36, C:0.24, G:0.08, T:0.31
Consensus pattern (158 bp):
AAAATACTCGAATCTAACGAATCTCGACCCGACCTTACAAAAGCAGTTTTTTTAAAATTTTAAAA
AATCAATCCGACCCAACCTGGTATAAATTATTATATCTATATATATATACACGTATATACCCGGC
TCCGTCCCACCCTGATCCCTAAAATTTT
Found at i:837147 original size:50 final size:49
Alignment explanation
Indices: 837093--837217 Score: 153
Period size: 50 Copynumber: 2.5 Consensus size: 49
837083 AGATATCCAG
* * * *
837093 GTATAGCGCGTTGCAGGGGTCGCGCTATA-CCACGTGTATGCCAGATCACC
1 GTATAGCGCGGTGCAGGGG-CGCGCTATACCCACGTG-ACGCCAAATCAAC
* *
837143 GTATAGCGCGGGGCAGGGGGCGCGCTATACCCACGTGGCGCCAAATCAAC
1 GTATAGCGCGGTGCA-GGGGCGCGCTATACCCACGTGACGCCAAATCAAC
*
837193 GTATAGCGCGGTGCATGGGCGCGCT
1 GTATAGCGCGGTGCAGGGGCGCGCT
837218 TTGCTAAGGG
Statistics
Matches: 65, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
49 9 0.14
50 45 0.69
51 11 0.17
ACGTcount: A:0.19, C:0.28, G:0.35, T:0.18
Consensus pattern (49 bp):
GTATAGCGCGGTGCAGGGGCGCGCTATACCCACGTGACGCCAAATCAAC
Found at i:843557 original size:18 final size:18
Alignment explanation
Indices: 843534--843575 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
843524 AATGTACTTT
843534 AATGTTGAATCATTCAGC
1 AATGTTGAATCATTCAGC
843552 AATGTTGAATCATTCAGC
1 AATGTTGAATCATTCAGC
*
843570 AGTGTT
1 AATGTT
843576 TTGTTGTTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.36
Consensus pattern (18 bp):
AATGTTGAATCATTCAGC
Found at i:843781 original size:18 final size:18
Alignment explanation
Indices: 843755--843797 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
843745 TTTCTCCTAT
*
843755 AATTATAATTAAAATTAA
1 AATTTTAATTAAAATTAA
*
843773 AATTTTAATTAAATTTAA
1 AATTTTAATTAAAATTAA
*
843791 TATTTTA
1 AATTTTA
843798 TTTCATTAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
AATTTTAATTAAAATTAA
Found at i:846976 original size:14 final size:14
Alignment explanation
Indices: 846957--846985 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
846947 TGCATACAGC
846957 TAATGTAATTAATG
1 TAATGTAATTAATG
846971 TAATGTAATTAATG
1 TAATGTAATTAATG
846985 T
1 T
846986 TTTTTTACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.14, T:0.45
Consensus pattern (14 bp):
TAATGTAATTAATG
Found at i:852803 original size:19 final size:19
Alignment explanation
Indices: 852779--852817 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
852769 ATTGAAGTTC
*
852779 TACTTTTCTTTCATCTTTT
1 TACTTTTCTTTCATATTTT
852798 TACTTTTCTTTCATATTTT
1 TACTTTTCTTTCATATTTT
852817 T
1 T
852818 TTTCACAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.13, C:0.18, G:0.00, T:0.69
Consensus pattern (19 bp):
TACTTTTCTTTCATATTTT
Found at i:854400 original size:25 final size:24
Alignment explanation
Indices: 854337--854409 Score: 62
Period size: 25 Copynumber: 3.0 Consensus size: 24
854327 TATTTTTTAT
854337 TATTTATATTAATATTATTTAATAC
1 TATTT-TATTAATATTATTTAATAC
*
854362 TATTTTAATAAATATTAATTATAA-AC
1 TATTTT-ATTAATATT-ATT-TAATAC
*
854388 -ATATTTATTAATAGT-TTTAATA
1 TAT-TTTATTAATATTATTTAATA
854410 ATATAATATT
Statistics
Matches: 40, Mismatches: 3, Indels: 12
0.73 0.05 0.22
Matches are distributed among these distances:
22 3 0.08
23 3 0.08
24 1 0.03
25 22 0.55
26 8 0.20
27 3 0.08
ACGTcount: A:0.44, C:0.03, G:0.01, T:0.52
Consensus pattern (24 bp):
TATTTTATTAATATTATTTAATAC
Found at i:866155 original size:35 final size:34
Alignment explanation
Indices: 866070--866156 Score: 88
Period size: 35 Copynumber: 2.5 Consensus size: 34
866060 AAAATAATTT
* *
866070 TAAATACAACAAACTTACAATAAGTATTAAATGG
1 TAAATACAACAAAATTACAATAAGTATTAAATGA
* *
866104 TAAATGATAACCAAATTACAATAACTGATATTAAATGA
1 TAAAT-ACAACAAAATTACAATAA--G-TATTAAATGA
866142 T-AATA-AACAAAATTA
1 TAAATACAACAAAATTA
866157 ACTTAAATAC
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
34 5 0.11
35 24 0.55
36 1 0.02
37 4 0.09
38 10 0.23
ACGTcount: A:0.55, C:0.10, G:0.07, T:0.28
Consensus pattern (34 bp):
TAAATACAACAAAATTACAATAAGTATTAAATGA
Found at i:868468 original size:9 final size:9
Alignment explanation
Indices: 868438--868486 Score: 50
Period size: 8 Copynumber: 5.8 Consensus size: 9
868428 ATCTGCAAAA
868438 AAATTAAAT
1 AAATTAAAT
*
868447 -AAGTAAA-
1 AAATTAAAT
*
868454 ATATTAAAT
1 AAATTAAAT
868463 AAATTAAAT
1 AAATTAAAT
*
868472 -ATTTAAAT
1 AAATTAAAT
868480 AAATTAA
1 AAATTAA
868487 GTACAAAATA
Statistics
Matches: 31, Mismatches: 6, Indels: 6
0.72 0.14 0.14
Matches are distributed among these distances:
8 18 0.58
9 13 0.42
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (9 bp):
AAATTAAAT
Found at i:868470 original size:17 final size:17
Alignment explanation
Indices: 868435--868486 Score: 63
Period size: 16 Copynumber: 3.1 Consensus size: 17
868425 TATATCTGCA
* *
868435 AAAAAATTAAAT-AAGT
1 AAAATATTAAATAAATT
868451 AAAATATTAAATAAATT
1 AAAATATTAAATAAATT
868468 -AAATATTTAAATAAATT
1 AAAATA-TTAAATAAATT
868485 AA
1 AA
868487 GTACAAAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
16 16 0.52
17 14 0.45
18 1 0.03
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (17 bp):
AAAATATTAAATAAATT
Found at i:869261 original size:16 final size:16
Alignment explanation
Indices: 869242--869272 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
869232 ATTTATGCTT
869242 TAATTTATAATATTAA
1 TAATTTATAATATTAA
*
869258 TAATTTGTAATATTA
1 TAATTTATAATATTA
869273 TAAGTATTCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (16 bp):
TAATTTATAATATTAA
Found at i:870243 original size:18 final size:18
Alignment explanation
Indices: 870220--870269 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
870210 AAGTTTAAAA
870220 TAATATTATTTTATTATT
1 TAATATTATTTTATTATT
* *
870238 TAATATTAATATATTATT
1 TAATATTATTTTATTATT
*
870256 TAAATACTATTTTA
1 T-AATATTATTTTA
870270 ATAAATATAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
18 17 0.65
19 9 0.35
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (18 bp):
TAATATTATTTTATTATT
Found at i:870303 original size:18 final size:19
Alignment explanation
Indices: 870263--870303 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
870253 ATTTAAATAC
*
870263 TATT-TTAATAAATATATT
1 TATTATTAATAAACATATT
*
870281 AATTATTAA-AAACATATT
1 TATTATTAATAAACATATT
870299 TATTA
1 TATTA
870304 ATAGTTTTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 2
0.79 0.12 0.08
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (19 bp):
TATTATTAATAAACATATT
Found at i:870685 original size:20 final size:20
Alignment explanation
Indices: 870641--870689 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
870631 AAAAATTTTG
* *
870641 AAACCATTGAAATTAAGTCG
1 AAACCATTGAAATTAACTCC
870661 AAACCATTGAAATTAACTCC
1 AAACCATTGAAATTAACTCC
*
870681 TAACCATTG
1 AAACCATTG
870690 TTAATAAATT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.43, C:0.20, G:0.10, T:0.27
Consensus pattern (20 bp):
AAACCATTGAAATTAACTCC
Found at i:882053 original size:35 final size:34
Alignment explanation
Indices: 881968--882054 Score: 88
Period size: 35 Copynumber: 2.5 Consensus size: 34
881958 AAAATAATTT
* *
881968 TAAATACAACAAACTTACAATAAGTATTAAATGG
1 TAAATACAACAAAATTACAATAAGTATTAAATGA
* *
882002 TAAATGATAACCAAATTACAATAACTGATATTAAATGA
1 TAAAT-ACAACAAAATTACAATAA--G-TATTAAATGA
882040 T-AATA-AACAAAATTA
1 TAAATACAACAAAATTA
882055 ACTTAAATAC
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
34 5 0.11
35 24 0.55
36 1 0.02
37 4 0.09
38 10 0.23
ACGTcount: A:0.55, C:0.10, G:0.07, T:0.28
Consensus pattern (34 bp):
TAAATACAACAAAATTACAATAAGTATTAAATGA
Found at i:884379 original size:9 final size:9
Alignment explanation
Indices: 884349--884397 Score: 50
Period size: 8 Copynumber: 5.8 Consensus size: 9
884339 ATCTGCAAAA
884349 AAATTAAAT
1 AAATTAAAT
*
884358 -AAGTAAA-
1 AAATTAAAT
*
884365 ATATTAAAT
1 AAATTAAAT
884374 AAATTAAAT
1 AAATTAAAT
*
884383 -ATTTAAAT
1 AAATTAAAT
884391 AAATTAA
1 AAATTAA
884398 GTACAAAATA
Statistics
Matches: 31, Mismatches: 6, Indels: 6
0.72 0.14 0.14
Matches are distributed among these distances:
8 18 0.58
9 13 0.42
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (9 bp):
AAATTAAAT
Found at i:884381 original size:17 final size:17
Alignment explanation
Indices: 884346--884397 Score: 63
Period size: 16 Copynumber: 3.1 Consensus size: 17
884336 TATATCTGCA
* *
884346 AAAAAATTAAAT-AAGT
1 AAAATATTAAATAAATT
884362 AAAATATTAAATAAATT
1 AAAATATTAAATAAATT
884379 -AAATATTTAAATAAATT
1 AAAATA-TTAAATAAATT
884396 AA
1 AA
884398 GTACAAAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
16 16 0.52
17 14 0.45
18 1 0.03
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (17 bp):
AAAATATTAAATAAATT
Found at i:885168 original size:16 final size:16
Alignment explanation
Indices: 885149--885179 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
885139 ATTTATGCTT
885149 TAATTTATAATATTAA
1 TAATTTATAATATTAA
*
885165 TAATTTGTAATATTA
1 TAATTTATAATATTA
885180 TAAGTATTCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (16 bp):
TAATTTATAATATTAA
Found at i:886208 original size:18 final size:19
Alignment explanation
Indices: 886168--886208 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
886158 AATTTAATAC
*
886168 TATT-TTAATAAATATATT
1 TATTATTAATAAACATATT
*
886186 AATTATTAA-AAACATATT
1 TATTATTAATAAACATATT
886204 TATTA
1 TATTA
886209 ATGGTTTAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 2
0.79 0.12 0.08
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (19 bp):
TATTATTAATAAACATATT
Found at i:886568 original size:20 final size:20
Alignment explanation
Indices: 886543--886592 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
886533 TAAAAATTTT
886543 GAAACCATTGAAATTAAGTC
1 GAAACCATTGAAATTAAGTC
886563 GAAACCATTGAAATTAAGTC
1 GAAACCATTGAAATTAAGTC
**
886583 CTAACCATTG
1 GAAACCATTG
886593 TTAATAAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.42, C:0.18, G:0.14, T:0.26
Consensus pattern (20 bp):
GAAACCATTGAAATTAAGTC
Found at i:911059 original size:24 final size:24
Alignment explanation
Indices: 911032--911089 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
911022 GAGGACAAGG
* *
911032 AGGAGGAGGACAATCAACAGGAGC
1 AGGACGAGGACAAGCAACAGGAGC
** *
911056 AGGACGAGGAGGAGGAACAGGAGC
1 AGGACGAGGACAAGCAACAGGAGC
911080 AGGACGAGGA
1 AGGACGAGGA
911090 GGAGGAAGAG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.40, C:0.14, G:0.45, T:0.02
Consensus pattern (24 bp):
AGGACGAGGACAAGCAACAGGAGC
Found at i:911065 original size:12 final size:12
Alignment explanation
Indices: 911050--911184 Score: 70
Period size: 12 Copynumber: 11.2 Consensus size: 12
911040 GACAATCAAC
911050 AGGAGCAGGACG
1 AGGAGCAGGACG
*
911062 AGGAGGAGGAAC-
1 AGGAGCAGG-ACG
911074 AGGAGCAGGACG
1 AGGAGCAGGACG
* *
911086 AGGAGGAGGAAG
1 AGGAGCAGGACG
*
911098 AGGA--AGAAC-
1 AGGAGCAGGACG
* *
911107 AAGA-CGACGACG
1 AGGAGC-AGGACG
911119 AGGAGCAGAACGACG
1 AGGAGCAG---GACG
*
911134 AGGAGGAGGAGCAAG
1 AGGAGCAGGA-C--G
911149 AGGAGCAGGACG
1 AGGAGCAGGACG
*
911161 AGGAG--GAAC-
1 AGGAGCAGGACG
911170 AGGAGCAGGACG
1 AGGAGCAGGACG
911182 AGG
1 AGG
911185 GGGATATAGA
Statistics
Matches: 93, Mismatches: 15, Indels: 30
0.67 0.11 0.22
Matches are distributed among these distances:
9 8 0.09
10 6 0.06
11 8 0.09
12 45 0.48
13 4 0.04
14 1 0.01
15 21 0.23
ACGTcount: A:0.39, C:0.13, G:0.47, T:0.00
Consensus pattern (12 bp):
AGGAGCAGGACG
Found at i:911152 original size:30 final size:30
Alignment explanation
Indices: 911118--911176 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
911108 AGACGACGAC
**
911118 GAGGAGCAGAACGACGAGGAGGAGGAGCAA
1 GAGGAGCAGAACGACGAGGAACAGGAGCAA
* *
911148 GAGGAGCAGGACGAGGAGGAACAGGAGCA
1 GAGGAGCAGAACGACGAGGAACAGGAGCA
911177 GGACGAGGGG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.39, C:0.14, G:0.47, T:0.00
Consensus pattern (30 bp):
GAGGAGCAGAACGACGAGGAACAGGAGCAA
Found at i:911158 original size:21 final size:21
Alignment explanation
Indices: 911134--911184 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
911124 CAGAACGACG
* *
911134 AGGAGGAGGAGCAAGAGGAGC
1 AGGACGAGGAGCAACAGGAGC
*
911155 AGGACGAGGAGGAACAGGAGC
1 AGGACGAGGAGCAACAGGAGC
911176 AGGACGAGG
1 AGGACGAGG
911185 GGGATATAGA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.37, C:0.12, G:0.51, T:0.00
Consensus pattern (21 bp):
AGGACGAGGAGCAACAGGAGC
Found at i:914757 original size:15 final size:15
Alignment explanation
Indices: 914739--914767 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
914729 ATTATTATTA
914739 ATATTTAATGATTTG
1 ATATTTAATGATTTG
914754 ATATTTAATGATTT
1 ATATTTAATGATTT
914768 AGTAATGATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (15 bp):
ATATTTAATGATTTG
Found at i:914776 original size:21 final size:21
Alignment explanation
Indices: 914752--914812 Score: 59
Period size: 24 Copynumber: 2.8 Consensus size: 21
914742 TTTAATGATT
914752 TGATATTTAATGATTTAGTAA
1 TGATATTTAATGATTTAGTAA
* *
914773 TGATTATTAATAATGATTTATTAT
1 TGA-TATT--TAATGATTTAGTAA
* *
914797 TAATATTTAATAATTT
1 TGATATTTAATGATTT
914813 GATACTAATG
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
21 11 0.33
22 4 0.12
23 4 0.12
24 14 0.42
ACGTcount: A:0.39, C:0.00, G:0.08, T:0.52
Consensus pattern (21 bp):
TGATATTTAATGATTTAGTAA
Found at i:914783 original size:10 final size:11
Alignment explanation
Indices: 914758--914854 Score: 52
Period size: 11 Copynumber: 8.3 Consensus size: 11
914748 GATTTGATAT
914758 TTAATGATTTA
1 TTAATGATTTA
*
914769 GTAATGATTATTA
1 TTAATGA-T-TTA
*
914782 ATAATGATTTA
1 TTAATGATTTA
* * *
914793 TTATTAATAT-
1 TTAATGATTTA
*
914803 TTAATAATTTGA
1 TTAATGATTT-A
914815 TACTAATGATTTA
1 T--TAATGATTTA
*
914828 GTAATGATTACTA
1 TTAATGATT--TA
*
914841 ATAATGATTTA
1 TTAATGATTTA
914852 TTA
1 TTA
914855 TTAACATTTA
Statistics
Matches: 66, Mismatches: 12, Indels: 16
0.70 0.13 0.17
Matches are distributed among these distances:
10 8 0.12
11 27 0.41
12 3 0.05
13 20 0.30
14 8 0.12
ACGTcount: A:0.40, C:0.02, G:0.09, T:0.48
Consensus pattern (11 bp):
TTAATGATTTA
Found at i:914821 original size:21 final size:22
Alignment explanation
Indices: 914783--914891 Score: 67
Period size: 21 Copynumber: 5.3 Consensus size: 22
914773 TGATTATTAA
* *
914783 TAATGATTT-ATTATTAATATT
1 TAATAATTTGATTACTAATATT
914804 TAATAATTTGA-TACTAATGATT
1 TAATAATTTGATTACTAAT-ATT
*
914826 TAGTAA--TGATTACT-A-A--
1 TAATAATTTGATTACTAATATT
* * *
914842 TAATGATTT-ATTATTAACATT
1 TAATAATTTGATTACTAATATT
*
914863 TAATTATTTGA-TACTAATGATT
1 TAATAATTTGATTACTAAT-ATT
914885 TAATAAT
1 TAATAAT
914892 ACGTAAGAAA
Statistics
Matches: 67, Mismatches: 10, Indels: 21
0.68 0.10 0.21
Matches are distributed among these distances:
16 4 0.06
17 5 0.07
18 3 0.04
19 1 0.01
20 4 0.06
21 31 0.46
22 19 0.28
ACGTcount: A:0.40, C:0.04, G:0.07, T:0.49
Consensus pattern (22 bp):
TAATAATTTGATTACTAATATT
Found at i:914844 original size:59 final size:59
Alignment explanation
Indices: 914730--914891 Score: 261
Period size: 59 Copynumber: 2.7 Consensus size: 59
914720 TTTAAGTTCA
* * *
914730 TTATTATTAATATTTAATGATTTGATATTTAATGATTTAGTAATGATTATTAATAATGAT
1 TTATTATTAATATTTAATAATTTGATA-CTAATGATTTAGTAATGATTACTAATAATGAT
914790 TTATTATTAATATTTAATAATTTGATACTAATGATTTAGTAATGATTACTAATAATGAT
1 TTATTATTAATATTTAATAATTTGATACTAATGATTTAGTAATGATTACTAATAATGAT
* * *
914849 TTATTATTAACATTTAATTATTTGATACTAATGATTTAATAAT
1 TTATTATTAATATTTAATAATTTGATACTAATGATTTAGTAAT
914892 ACGTAAGAAA
Statistics
Matches: 96, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
59 70 0.73
60 26 0.27
ACGTcount: A:0.40, C:0.02, G:0.08, T:0.50
Consensus pattern (59 bp):
TTATTATTAATATTTAATAATTTGATACTAATGATTTAGTAATGATTACTAATAATGAT
Found at i:915135 original size:124 final size:125
Alignment explanation
Indices: 914915--915167 Score: 402
Period size: 124 Copynumber: 2.0 Consensus size: 125
914905 TCGATACTTT
*
914915 TAAAAGAAATAGGTAAATAACCTATCGAAAGTATCGACACCTGACATAAAAGTATCGACGCTATG
1 TAAAAGAAATAGGTAAATAACCTATCGAAAGTATCGACACCTGACATAAAAGTATCGACGATATG
* *
914980 GTAATTATATCGATTAAATATAAATAACATAAAACTATTGATTTT-TGAACCCTAAACCC
66 GTAATTATATCGATTAAATATAAATAACATAAAACTATTGATTTTGCGAACACTAAACCC
** * *
915039 TAAAAGAAATAGGTAAATAATTTATCGAAAGTATCGACACCTGACATAAAAGTATTGAC-ATTTG
1 TAAAAGAAATAGGTAAATAACCTATCGAAAGTATCGACACCTGACATAAAAGTATCGACGATAT-
* *
915103 GGTAATTATATCTATTAAATATAAATAACATAAAACTATTGATTTTGCGAACACTAAATCC
65 GGTAATTATATCGATTAAATATAAATAACATAAAACTATTGATTTTGCGAACACTAAACCC
915164 TAAA
1 TAAA
915168 TTTTATCAAT
Statistics
Matches: 118, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
123 2 0.02
124 101 0.86
125 15 0.13
ACGTcount: A:0.45, C:0.14, G:0.12, T:0.29
Consensus pattern (125 bp):
TAAAAGAAATAGGTAAATAACCTATCGAAAGTATCGACACCTGACATAAAAGTATCGACGATATG
GTAATTATATCGATTAAATATAAATAACATAAAACTATTGATTTTGCGAACACTAAACCC
Found at i:915261 original size:21 final size:21
Alignment explanation
Indices: 915235--915274 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
915225 ACAACAAAAA
*
915235 ATTTTA-AGGTTTAGGGTTTAG
1 ATTTTAGA-GTTTAAGGTTTAG
915256 ATTTTAGAGTTTAAGGTTT
1 ATTTTAGAGTTTAAGGTTT
915275 TTAACAACAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 16 0.94
22 1 0.06
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (21 bp):
ATTTTAGAGTTTAAGGTTTAG
Found at i:915695 original size:21 final size:21
Alignment explanation
Indices: 915649--915754 Score: 62
Period size: 21 Copynumber: 5.2 Consensus size: 21
915639 CTTACGTATT
915649 ATTAAATCATTAGT-ATCAAATC
1 ATTAAAT-ATTAGTAAT-AAATC
*
915671 ATTAAATATTAATAAT-AA--
1 ATTAAATATTAGTAATAAATC
* * *
915689 ATT-ATTATTAGTAAT-TATT
1 ATTAAATATTAGTAATAAATC
* * **
915708 ACTAAATCATTAGTATCAAATC
1 ATTAAA-TATTAGTAATAAATC
*
915730 ATTAAATATTAATAATAAATC
1 ATTAAATATTAGTAATAAATC
915751 ATTA
1 ATTA
915755 TTAGTAATCA
Statistics
Matches: 62, Mismatches: 16, Indels: 13
0.68 0.18 0.14
Matches are distributed among these distances:
17 11 0.18
18 3 0.05
19 2 0.03
20 3 0.05
21 27 0.44
22 16 0.26
ACGTcount: A:0.49, C:0.08, G:0.03, T:0.41
Consensus pattern (21 bp):
ATTAAATATTAGTAATAAATC
Done.