genome.fa.s8437.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008437.1 Hibiscus syriacus cultivar Beakdansim tig00111236_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  223559

Tables:   1   2   

This is table  1  of  2  ( 124 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3035--3083	18	2.7	18	74	3	53	40	4	4	51	1.40
3954--3998	23	2.0	23	86	4	65	48	2	6	42	1.41
6067--6104	16	2.4	16	86	8	51	42	0	0	57	0.98
6609--6651	21	2.1	20	86	4	59	48	0	13	37	1.43
7372--7424	27	2.0	27	100	0	106	37	18	9	33	1.83
11883--11925	14	3.1	14	77	9	52	67	6	0	25	1.15
12603--12650	22	2.1	23	85	11	64	75	0	20	4	0.97
13478--13511	15	2.3	15	89	0	50	61	0	5	32	1.20
14846--14902	19	3.1	19	71	14	57	42	5	5	47	1.48
16754--16790	2	18.5	2	100	0	74	51	0	0	48	1.00
18180--18209	2	14.5	2	93	6	51	50	0	3	46	1.18
23465--23797	54	6.3	54	80	8	218	26	25	16	32	1.96
23538--23954	51	8.0	51	81	11	393	25	23	17	32	1.97
23671--23955	155	1.8	153	87	6	423	26	22	17	32	1.97
23939--24174	52	4.4	55	86	4	288	27	26	15	31	1.96
25090--25136	14	3.4	14	83	13	62	10	8	0	80	0.89
35107--35144	16	2.3	16	95	4	67	36	28	7	26	1.84
41128--41216	25	3.2	25	66	27	61	43	0	10	46	1.37
41008--41262	49	5.0	49	77	15	225	41	0	11	46	1.45
41115--41240	60	2.1	59	91	1	198	42	0	12	44	1.48
41060--41262	109	1.9	108	92	3	345	40	0	12	46	1.45
41672--41826	13	10.9	14	67	23	58	44	0	6	49	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41546--41891	59	5.8	59	87	6	434	43	0	7	48	1.35
41742--41812	24	3.1	23	78	15	76	45	0	5	49	1.26
44213--44242	4	7.5	4	92	0	51	53	23	3	20	1.60
44351--44437	30	2.9	30	93	3	140	45	13	1	39	1.51
44355--44409	15	3.6	16	70	20	55	43	14	0	41	1.45
44739--44798	30	2.1	28	81	12	68	43	10	0	46	1.37
44393--45040	355	1.8	341	82	9	754	46	12	1	39	1.51
46025--46059	2	17.5	2	100	0	70	51	0	0	48	1.00
46115--46141	14	1.9	14	100	0	54	33	0	0	66	0.92
46290--46344	27	1.9	27	85	10	74	58	3	10	27	1.49
46325--46383	30	2.0	29	83	6	75	35	3	11	49	1.56
47184--47236	24	2.2	25	83	10	65	64	3	15	16	1.44
47396--47442	18	2.5	19	77	12	53	82	4	2	10	0.88
47505--47605	10	9.4	11	70	16	61	74	0	4	19	1.06
48710--48761	2	26.5	2	92	3	88	50	1	0	48	1.12
50469--50511	20	2.2	19	83	4	50	37	6	23	32	1.82
51945--51969	13	1.9	13	100	0	50	44	16	0	40	1.47
52427--52451	13	1.9	13	100	0	50	40	20	24	16	1.91
54937--54962	13	2.0	13	100	0	52	38	15	23	23	1.92
54939--54975	19	1.9	19	88	0	56	45	16	16	21	1.84
61361--61411	20	2.5	21	87	6	70	31	9	27	31	1.89
62066--62132	22	3.0	23	80	12	68	25	19	25	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62090--62139	22	2.3	22	92	0	82	24	14	26	36	1.93
75066--75095	16	1.9	15	93	6	51	46	0	13	40	1.43
77944--77985	19	2.3	19	91	4	68	21	33	33	11	1.90
79989--80022	2	17.0	2	100	0	68	50	0	0	50	1.00
83552--84018	116	4.0	116	81	3	503	35	16	23	25	1.95
84111--84311	36	5.6	36	84	1	231	29	15	10	43	1.80
84111--84273	73	2.2	72	86	1	227	29	14	9	46	1.77
99165--99211	18	2.7	17	83	3	58	38	8	25	27	1.85
99573--100160	243	2.4	239	87	8	835	42	19	11	26	1.86
107159--107219	26	2.3	26	83	5	70	9	4	8	77	1.13
114589--114669	33	2.5	33	89	4	119	28	13	19	38	1.90
114605--114670	33	2.0	33	96	0	123	27	10	21	40	1.86
114724--114781	4	15.8	4	89	7	56	75	0	0	24	0.80
114724--114782	12	4.7	12	76	12	64	76	0	0	23	0.79
114737--114799	3	21.3	3	81	18	55	69	0	0	30	0.88
114724--114799	39	2.0	36	87	7	107	72	0	0	27	0.85
114741--114800	5	12.4	5	91	5	56	68	0	0	31	0.90
115157--115401	83	2.9	83	87	1	321	22	19	26	31	1.97
115408--115469	30	2.1	30	84	6	81	32	8	17	41	1.79
115500--115562	32	2.0	32	90	9	103	46	12	12	28	1.79
115600--115709	36	3.0	36	92	2	184	36	12	22	28	1.91
116881--116975	32	2.9	32	81	7	111	37	18	12	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116876--116982	32	3.3	32	75	10	101	37	20	14	28	1.91
121532--121592	31	2.0	31	93	0	104	31	13	18	37	1.88
124937--125477	250	2.1	256	87	5	783	41	18	11	29	1.85
134450--134484	17	2.1	17	100	0	70	22	25	22	28	1.99
139761--139811	23	2.3	23	86	6	79	19	21	41	17	1.91
142178--142219	3	14.0	3	89	0	66	35	0	2	61	1.09
143513--143566	22	2.4	21	84	9	63	42	0	0	57	0.98
143592--143859	140	1.9	140	79	7	305	39	6	8	45	1.60
145367--145419	21	2.6	21	82	11	65	35	9	1	52	1.45
150137--150178	11	3.8	11	87	12	68	71	0	2	26	0.98
150351--150387	2	18.5	2	94	0	65	54	0	0	45	1.00
150842--150892	26	2.0	26	81	14	61	47	13	5	33	1.67
151552--151940	161	2.4	162	78	9	398	37	10	14	38	1.80
151756--152555	385	2.1	384	97	0	1530	37	10	14	36	1.81
153336--153408	25	2.9	25	77	0	83	46	21	9	21	1.80
156860--156946	44	2.0	44	86	0	120	29	13	13	42	1.83
156987--157045	25	2.4	25	94	2	102	61	5	5	28	1.39
157864--157961	43	2.2	44	89	1	144	36	14	7	41	1.73
158200--158284	44	1.9	44	90	0	134	34	15	8	42	1.77
159625--159709	44	1.9	44	87	0	125	36	8	10	44	1.69
160086--160116	12	2.6	12	100	0	62	22	22	0	54	1.44
163508--163678	44	3.9	44	83	4	229	34	10	8	46	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
163492--163685	88	2.2	88	93	0	325	34	9	10	45	1.72
163624--164166	164	3.4	162	82	7	642	36	9	12	40	1.77
166007--166052	2	23.0	2	100	0	92	0	0	50	50	1.00
168313--168350	12	3.1	12	88	7	58	23	23	7	44	1.79
173347--173371	12	2.1	12	100	0	50	16	32	28	24	1.96
173385--173568	29	6.4	29	74	13	103	32	4	15	47	1.65
173540--173588	25	2.0	25	83	0	62	38	4	12	44	1.61
174251--174302	24	2.2	24	85	0	68	25	11	23	40	1.88
180542--180567	13	2.0	13	100	0	52	15	46	23	15	1.83
180596--180633	18	2.2	17	86	9	51	26	5	26	42	1.76
182574--182609	2	18.0	2	88	0	54	44	0	0	55	0.99
183677--183764	44	2.0	43	86	2	122	36	11	9	43	1.72
183447--183916	201	2.3	205	81	6	528	36	10	12	40	1.77
189139--189167	2	14.5	2	100	0	58	48	0	0	51	1.00
190541--190581	21	2.0	21	85	9	57	26	4	14	53	1.61
191418--191482	30	2.2	30	85	0	85	33	3	33	29	1.73
193345--193380	10	3.6	10	88	0	54	30	0	27	41	1.56
193345--193382	20	1.9	20	94	0	67	31	0	28	39	1.57
193347--193410	20	3.2	20	79	16	55	32	6	25	35	1.81
195780--195809	7	4.3	7	95	0	51	10	33	0	56	1.32
196486--196528	17	2.6	16	79	13	52	51	0	0	48	1.00
198438--198470	2	16.5	2	100	0	66	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
199992--200030	13	3.1	13	88	3	53	48	2	7	41	1.45
202424--202448	13	1.9	13	100	0	50	56	16	8	20	1.65
204134--204173	21	1.9	21	85	10	55	35	7	2	55	1.42
206151--206241	45	2.0	46	91	2	148	26	18	26	28	1.98
206578--206636	31	1.9	31	85	0	82	50	15	10	23	1.74
207714--207758	22	2.0	23	86	4	65	4	8	22	64	1.40
208435--208579	39	3.8	40	74	22	116	58	6	0	34	1.25
208477--208604	30	4.2	31	78	15	106	57	5	0	36	1.28
208478--208602	25	5.3	25	72	19	83	56	5	0	36	1.28
208474--208639	11	15.0	11	66	24	50	56	4	1	37	1.29

Tables:   1   2