Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008439.1 Hibiscus syriacus cultivar Beakdansim tig00111238_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2703160
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 3 of 9
Found at i:680955 original size:20 final size:20
Alignment explanation
Indices: 680929--680977 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
680919 TCGGTAATTA
680929 GCGTTGCGAATTTGAAAACC
1 GCGTTGCGAATTTGAAAACC
* * *
680949 TCGTTGCGAATTTGTAAATC
1 GCGTTGCGAATTTGAAAACC
680969 GCGTTGCGA
1 GCGTTGCGA
680978 TAGTACTGTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (20 bp):
GCGTTGCGAATTTGAAAACC
Found at i:681011 original size:134 final size:133
Alignment explanation
Indices: 680681--681034 Score: 327
Period size: 134 Copynumber: 2.6 Consensus size: 133
680671 TCGGTAATTA
* * * *
680681 GCGTTGCGAATTTGAAAATCGTGTTGCGATAGTACTGTTTACCTATGTCGGTAAGTAGCGTTGTG
1 GCGTTGCGAATTTGTAAATCG-GTTGCGATAGTACTGTTTACCTATGTCGGTAATTAACGTTGCG
*
680746 AATTTGTAAATCTCGTTGCGATAGTACTGTTTACCTGTATCGGTAATTAGCGTTGCGAATTTATA
65 AATTTATAAATCTCGTTGCGATAGTACTGTTTACCTGTATCGGTAATTAGCGTTGCGAATTTATA
*
680811 AATC
130 AACC
* * * * * * *
680815 GCGTTGCG-A-TAGT-ACT-GTTTAC-CTA-TATCGGTAATTAGCGT-TG--GG-AATTTAAAAA
1 GCGTTGCGAATTTGTAAATCGGTTGCGATAGTA-CTGT--TTA-CCTATGTCGGTAA-TT----A
* *
680870 TATCGTTGCGAATTTATAAATCGCGTTGCGATAGTACTGTTTACCTAG-GTCGGTAATTAGCGTT
57 -A-CGTTGCGAATTTATAAATCTCGTTGCGATAGTACTGTTTACCT-GTATCGGTAATTAGCGTT
680934 GCGAATTTGA-AAACC
119 GCGAATTT-ATAAACC
*
680949 TCGTTGCGAATTTGTAAATCGCGTTGCGATAGTACTGTTTACCTATGTCGGTAATTAACGTTGCG
1 GCGTTGCGAATTTGTAAATCG-GTTGCGATAGTACTGTTTACCTATGTCGGTAATTAACGTTGCG
* *
681014 AATTTAAAAATCTCATTGCGA
65 AATTTATAAATCTCGTTGCGA
681035 ATTTGTAAAT
Statistics
Matches: 170, Mismatches: 26, Indels: 48
0.70 0.11 0.20
Matches are distributed among these distances:
127 4 0.02
128 8 0.05
129 3 0.02
130 6 0.04
131 4 0.02
132 3 0.02
133 1 0.01
134 107 0.63
135 4 0.02
136 4 0.02
137 4 0.02
138 6 0.04
139 3 0.02
140 9 0.05
141 4 0.02
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36
Consensus pattern (133 bp):
GCGTTGCGAATTTGTAAATCGGTTGCGATAGTACTGTTTACCTATGTCGGTAATTAACGTTGCGA
ATTTATAAATCTCGTTGCGATAGTACTGTTTACCTGTATCGGTAATTAGCGTTGCGAATTTATAA
ACC
Found at i:681052 original size:20 final size:20
Alignment explanation
Indices: 681007--681054 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
680997 CGGTAATTAA
*
681007 CGTTGCGAATTTAAAAATCT
1 CGTTGCGAATTTAAAAATCG
* **
681027 CATTGCGAATTTGTAAATCG
1 CGTTGCGAATTTAAAAATCG
681047 CGTTGCGA
1 CGTTGCGA
681055 TAGTACTGTT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (20 bp):
CGTTGCGAATTTAAAAATCG
Found at i:681109 original size:20 final size:20
Alignment explanation
Indices: 681083--681128 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
681073 TCGGTAATTA
681083 GCGTTGCGAATTTGAAAATC
1 GCGTTGCGAATTTGAAAATC
* *
681103 TCGTTGCGAATTTGTAAATC
1 GCGTTGCGAATTTGAAAATC
681123 GCGTTG
1 GCGTTG
681129 TGATAGTATT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.24, C:0.15, G:0.26, T:0.35
Consensus pattern (20 bp):
GCGTTGCGAATTTGAAAATC
Found at i:681189 original size:20 final size:21
Alignment explanation
Indices: 681160--681220 Score: 88
Period size: 21 Copynumber: 3.0 Consensus size: 21
681150 TCGGTAATTA
*
681160 GCGTTACGAATTT-GAAAATC
1 GCGTTGCGAATTTAGAAAATC
681180 GCGTTGCGAATTTAGAAAATC
1 GCGTTGCGAATTTAGAAAATC
* *
681201 ACGTTGCGAATTTGGAAAAT
1 GCGTTGCGAATTTAGAAAAT
681221 GACGTTGTGA
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
20 12 0.32
21 25 0.68
ACGTcount: A:0.34, C:0.13, G:0.23, T:0.30
Consensus pattern (21 bp):
GCGTTGCGAATTTAGAAAATC
Found at i:681225 original size:21 final size:20
Alignment explanation
Indices: 681161--681227 Score: 82
Period size: 21 Copynumber: 3.2 Consensus size: 20
681151 CGGTAATTAG
*
681161 CGTTACGAATTTGAAAATCG-
1 CGTTGCGAATTTGAAAAT-GA
*
681181 CGTTGCGAATTTAGAAAATCA
1 CGTTGCGAATTT-GAAAATGA
681202 CGTTGCGAATTTGGAAAATGA
1 CGTTGCGAATTT-GAAAATGA
681223 CGTTG
1 CGTTG
681228 TGATTTACAT
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
20 11 0.27
21 30 0.73
ACGTcount: A:0.33, C:0.13, G:0.24, T:0.30
Consensus pattern (20 bp):
CGTTGCGAATTTGAAAATGA
Found at i:681246 original size:20 final size:20
Alignment explanation
Indices: 681223--681260 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
681213 TGGAAAATGA
*
681223 CGTTGTGATTTACATATTAT
1 CGTTGCGATTTACATATTAT
681243 CGTTGCGATTTACATATT
1 CGTTGCGATTTACATATT
681261 CGCGTTGCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.24, C:0.13, G:0.16, T:0.47
Consensus pattern (20 bp):
CGTTGCGATTTACATATTAT
Found at i:681266 original size:20 final size:20
Alignment explanation
Indices: 681223--681268 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
681213 TGGAAAATGA
* *
681223 CGTTGTGATTTACATATTAT
1 CGTTGCGATTTACATATTAG
*
681243 CGTTGCGATTTACATATTCG
1 CGTTGCGATTTACATATTAG
681263 CGTTGC
1 CGTTGC
681269 AAATTTGAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.20, C:0.17, G:0.20, T:0.43
Consensus pattern (20 bp):
CGTTGCGATTTACATATTAG
Found at i:682891 original size:33 final size:33
Alignment explanation
Indices: 682842--682934 Score: 132
Period size: 33 Copynumber: 2.8 Consensus size: 33
682832 GGTTGCCTGG
* *
682842 GATACCCCAGACACCATGGAGGTCCGCCCTTAA
1 GATACCCCGGACACCATGGAGGTCCGCCCCTAA
* *
682875 GATACCCCGGATACCATGGAAGTCCGCCCCTAA
1 GATACCCCGGACACCATGGAGGTCCGCCCCTAA
* *
682908 GATACCCCGGACATCATAGAGGTCCGC
1 GATACCCCGGACACCATGGAGGTCCGC
682935 ACCGTTTCTT
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 52 1.00
ACGTcount: A:0.27, C:0.35, G:0.23, T:0.15
Consensus pattern (33 bp):
GATACCCCGGACACCATGGAGGTCCGCCCCTAA
Found at i:684391 original size:48 final size:47
Alignment explanation
Indices: 684339--684469 Score: 135
Period size: 48 Copynumber: 2.8 Consensus size: 47
684329 AGAAGGGGGT
684339 GGAGGGGGTGACTTGTAATAGTAATAAGGTGGCGGTGGTGACGGAGAA
1 GGAGGGGGTGACTTGT-ATAGTAATAAGGTGGCGGTGGTGACGGAGAA
* * * * *
684387 GGAGGTGGTGGTGA-TT-TGTAGTGATAAGGTGGTGGAGGTGATGGAGAA
1 GGA-G-GG-GGTGACTTGTATAGTAATAAGGTGGCGGTGGTGACGGAGAA
* *
684435 GGAGGTGGTGACTTGTA-A-TAATATGGTGGCGGTGG
1 GGAGGGGGTGACTTGTATAGTAATAAGGTGGCGGTGG
684470 ACTAGGATAT
Statistics
Matches: 67, Mismatches: 11, Indels: 13
0.74 0.12 0.14
Matches are distributed among these distances:
45 18 0.27
46 4 0.06
47 2 0.03
48 32 0.48
49 2 0.03
50 4 0.06
51 5 0.07
ACGTcount: A:0.24, C:0.04, G:0.47, T:0.25
Consensus pattern (47 bp):
GGAGGGGGTGACTTGTATAGTAATAAGGTGGCGGTGGTGACGGAGAA
Found at i:684535 original size:48 final size:48
Alignment explanation
Indices: 684441--684562 Score: 120
Period size: 48 Copynumber: 2.5 Consensus size: 48
684431 AGAAGGAGGT
* * * * * * *
684441 GGTGACTTGTAATAATATGGTGGCGGTGGACTAGGATATGGTGGTGGT
1 GGTGAATTGTAATAGTATGGAGGTGGTGGACTAGGATAAGGGGGTGGA
* * *
684489 TGTGAATTGTAGTTGTATGGAGGTGGTGGACTAGG-TGAAGGGGGTGGA
1 GGTGAATTGTAATAGTATGGAGGTGGTGGACTAGGAT-AAGGGGGTGGA
* *
684537 GGTGACTTGTAATAGTAAGGAGGTGG
1 GGTGAATTGTAATAGTATGGAGGTGG
684563 CGGTGATGGA
Statistics
Matches: 58, Mismatches: 15, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
47 1 0.02
48 57 0.98
ACGTcount: A:0.22, C:0.04, G:0.44, T:0.30
Consensus pattern (48 bp):
GGTGAATTGTAATAGTATGGAGGTGGTGGACTAGGATAAGGGGGTGGA
Found at i:684595 original size:48 final size:48
Alignment explanation
Indices: 684540--684643 Score: 120
Period size: 48 Copynumber: 2.2 Consensus size: 48
684530 GGGTGGAGGT
* * * * *
684540 GACTTGT-AATAGTAAGGAGGTGGCGGTGATGGAGATAGTGGTGCTGGA
1 GACTTGTAAAT-GTAAGGAGGCGGAGGAGAGGGAGATAGTGGAGCTGGA
* * *
684588 GATTTGTAAATGTAAGGAGGCGGAGGAGAGGGAGATGGTGGAGGTGGA
1 GACTTGTAAATGTAAGGAGGCGGAGGAGAGGGAGATAGTGGAGCTGGA
684636 GACTTGTA
1 GACTTGTA
684644 GTATGGTGGT
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
48 43 0.93
49 3 0.07
ACGTcount: A:0.27, C:0.05, G:0.45, T:0.23
Consensus pattern (48 bp):
GACTTGTAAATGTAAGGAGGCGGAGGAGAGGGAGATAGTGGAGCTGGA
Found at i:684627 original size:141 final size:144
Alignment explanation
Indices: 684495--685036 Score: 819
Period size: 141 Copynumber: 3.8 Consensus size: 144
684485 TGGTTGTGAA
* * * * * * * * * *
684495 TTGTAGTTGTATGGAGGTGGTGGACTAGGTGAAGGGGGTGGAGGTGACTTGTAATAGTAAGGAGG
1 TTGTAGTAGTATGGTGGTGGGGGACTAGGAGAAGGGGGAGGGGGAGACTTGTAGTAGTATGGTGG
* * * ** * * * * *
684560 TGGCGGTGAT-GGAGATAGTGGTGCTGGAGATTTGTAAATGTAAGGAGGCGGAGGAGAGGGAGAT
66 TGGAGG-GCTAGGTGAGGGAGGTGGTGGTGACTTGTAAATGTAAGGAGGTGGAGGAGAGGGAGAT
684624 GGTGGAGGTGGAGAC
130 GGTGGAGGTGGAGAC
*
684639 -T-T-GTAGTATGGTGGTGGGGGACTAGGAGAAGGTGGAGGGGGAGACTTGTAGTAGTATGGTGG
1 TTGTAGTAGTATGGTGGTGGGGGACTAGGAGAAGGGGGAGGGGGAGACTTGTAGTAGTATGGTGG
684701 TGGAGGGCTAGGTGAGGGAGGTGGTGGTGACTTGTAAATGTAAGGAGGTGGAGGAGAGGGAGATG
66 TGGAGGGCTAGGTGAGGGAGGTGGTGGTGACTTGTAAATGTAAGGAGGTGGAGGAGAGGGAGATG
684766 GTGGAGGTGGAGAC
131 GTGGAGGTGGAGAC
*
684780 TTGTAGTAGTATGGTGGTGGGGGACTAGGAGAAGGTGGAGGGGGAGACTTGTAGTAGTATGGTGG
1 TTGTAGTAGTATGGTGGTGGGGGACTAGGAGAAGGGGGAGGGGGAGACTTGTAGTAGTATGGTGG
684845 TGGAGGGCTAGGTGAGGGAGGTGGTGGTGACTTGTAAATGTAAGGAGGTGGA-GA-A-GGAGATG
66 TGGAGGGCTAGGTGAGGGAGGTGGTGGTGACTTGTAAATGTAAGGAGGTGGAGGAGAGGGAGATG
684907 GTGGAGGTGGAGAC
131 GTGGAGGTGGAGAC
*
684921 TTGTAGTAGTATGGTGGTGGGGGATTAGGAGAAGGGGGAGGGGGAGACTTGTAGTAGTATGGTGG
1 TTGTAGTAGTATGGTGGTGGGGGACTAGGAGAAGGGGGAGGGGGAGACTTGTAGTAGTATGGTGG
684986 TGGAGGGCTAGGTGAGGGAGGTGGTGGTGACTTGTAAATGTAAGGAGGTGG
66 TGGAGGGCTAGGTGAGGGAGGTGGTGGTGACTTGTAAATGTAAGGAGGTGG
685037 GGACTTGTAG
Statistics
Matches: 371, Mismatches: 23, Indels: 11
0.92 0.06 0.03
Matches are distributed among these distances:
140 2 0.01
141 250 0.67
142 3 0.01
143 4 0.01
144 112 0.30
ACGTcount: A:0.23, C:0.04, G:0.50, T:0.23
Consensus pattern (144 bp):
TTGTAGTAGTATGGTGGTGGGGGACTAGGAGAAGGGGGAGGGGGAGACTTGTAGTAGTATGGTGG
TGGAGGGCTAGGTGAGGGAGGTGGTGGTGACTTGTAAATGTAAGGAGGTGGAGGAGAGGGAGATG
GTGGAGGTGGAGAC
Found at i:684712 original size:48 final size:48
Alignment explanation
Indices: 684618--685021 Score: 384
Period size: 48 Copynumber: 8.5 Consensus size: 48
684608 CGGAGGAGAG
*
684618 GGAGATGGTGGAGGTGGAGAC-T-T-GTAGTATGGTGGTGG-GGGACTA
1 GGAGAAGGTGGAGGTGGAGACTTGTAGTAGTATGGTGGTGGAGGG-CTA
*
684663 GGAGAAGGTGGAGGGGGAGACTTGTAGTAGTATGGTGGTGGAGGGCTA
1 GGAGAAGGTGGAGGTGGAGACTTGTAGTAGTATGGTGGTGGAGGGCTA
* * * * * * * *
684711 GGTGAGGGAGGTGGTGGTGACTTGTA-AATGTAAGGAGGTGGAGGAG--A
1 GGAGAAGGTGGAGGTGGAGACTTGTAGTA-GTATGGTGGTGGAGG-GCTA
*
684758 GGGAGATGGTGGAGGTGGAGACTTGTAGTAGTATGGTGGTGG-GGGACTA
1 -GGAGAAGGTGGAGGTGGAGACTTGTAGTAGTATGGTGGTGGAGGG-CTA
*
684807 GGAGAAGGTGGAGGGGGAGACTTGTAGTAGTATGGTGGTGGAGGGCTA
1 GGAGAAGGTGGAGGTGGAGACTTGTAGTAGTATGGTGGTGGAGGGCTA
* * * * * * * * *
684855 GGTGAGGGAGGTGGTGGTGACTTGTA-AATGTAAGGAGGTGGA--G-AA
1 GGAGAAGGTGGAGGTGGAGACTTGTAGTA-GTATGGTGGTGGAGGGCTA
* *
684900 GGAGATGGTGGAGGTGGAGACTTGTAGTAGTATGGTGGTGG-GGGATTA
1 GGAGAAGGTGGAGGTGGAGACTTGTAGTAGTATGGTGGTGGAGGG-CTA
* *
684948 GGAGAAGGGGGAGGGGGAGACTTGTAGTAGTATGGTGGTGGAGGGCTA
1 GGAGAAGGTGGAGGTGGAGACTTGTAGTAGTATGGTGGTGGAGGGCTA
* * * * *
684996 GGTGAGGGAGGTGGTGGTGACTTGTA
1 GGAGAAGGTGGAGGTGGAGACTTGTA
685022 AATGTAAGGA
Statistics
Matches: 290, Mismatches: 50, Indels: 35
0.77 0.13 0.09
Matches are distributed among these distances:
45 51 0.18
46 5 0.02
47 6 0.02
48 216 0.74
49 12 0.04
ACGTcount: A:0.22, C:0.03, G:0.51, T:0.23
Consensus pattern (48 bp):
GGAGAAGGTGGAGGTGGAGACTTGTAGTAGTATGGTGGTGGAGGGCTA
Found at i:684819 original size:189 final size:189
Alignment explanation
Indices: 684495--684835 Score: 438
Period size: 189 Copynumber: 1.8 Consensus size: 189
684485 TGGTTGTGAA
* *
684495 TTGTAGTTGTATGGAGGTGGTGGACTAGGTGAAGGGGGTGGAGGTGACTTGTAATAGTAAGGAGG
1 TTGTAGTAGTATGGAGGTGGAGGACTAGGTGAAGGGGGTGGAGGTGACTTGTAATAGTAAGGAGG
* * * * * *
684560 TGGCGGTGATGGAGATAGTGGTGCTGGAGATTTGTAAATGTAAGGAGGCGGAGGAGAGGGAGATG
66 TGGAGGAGAGGGAGATAGTGGAGCTGGAGACTTGTAAATGTAAGGAGGCGGAGGAGAGGGAGAAG
*
684625 GTGGAGGTGGAGACTTGTAGTATGGTGGTGGGGGACTAGGAGAAGGTGGAGGGGGAGAC
131 GTGGAGGGGGAGACTTGTAGTATGGTGGTGGGGGACTAGGAGAAGGTGGAGGGGGAGAC
* * *
684684 TTGTAGTAGTATGGTGGTGGAGGGCTAGGTG-AGGGAGGTGGTGGTGACTTGTAA-ATGTAAGGA
1 TTGTAGTAGTATGGAGGTGGAGGACTAGGTGAAGGG-GGTGGAGGTGACTTGTAATA-GTAAGGA
* * * * * * * *
684747 GGTGGAGGAGAGGGAGATGGTGGAGGTGGAGACTTGT-AGTAGTATGGTGGTGGGGGACTA-GGA
64 GGTGGAGGAGAGGGAGATAGTGGAGCTGGAGACTTGTAAAT-GTAAGGAGGCGGAGGA-GAGGGA
684810 GAAGGTGGAGGGGGAGACTTGTAGTA
127 GAAGGTGGAGGGGGAGACTTGTAGTA
684836 GTATGGTGGT
Statistics
Matches: 128, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
188 7 0.05
189 120 0.94
190 1 0.01
ACGTcount: A:0.23, C:0.04, G:0.50, T:0.23
Consensus pattern (189 bp):
TTGTAGTAGTATGGAGGTGGAGGACTAGGTGAAGGGGGTGGAGGTGACTTGTAATAGTAAGGAGG
TGGAGGAGAGGGAGATAGTGGAGCTGGAGACTTGTAAATGTAAGGAGGCGGAGGAGAGGGAGAAG
GTGGAGGGGGAGACTTGTAGTATGGTGGTGGGGGACTAGGAGAAGGTGGAGGGGGAGAC
Found at i:684839 original size:144 final size:144
Alignment explanation
Indices: 684591--685036 Score: 823
Period size: 141 Copynumber: 3.1 Consensus size: 144
684581 TGCTGGAGAT
*
684591 TTGTAAATGTAAGGAGGCGGAGGAGAGGGAGATGGTGGAGGTGGAGAC-T-T-GTAGTATGGTGG
1 TTGTAAATGTAAGGAGGTGGAGGAGAGGGAGATGGTGGAGGTGGAGACTTGTAGTAGTATGGTGG
684653 TGGGGGACTAGGAGAAGGTGGAGGGGGAGACTTGTAGTAGTATGGTGGTGGAGGGCTAGGTGAGG
66 TGGGGGACTAGGAGAAGGTGGAGGGGGAGACTTGTAGTAGTATGGTGGTGGAGGGCTAGGTGAGG
684718 GAGGTGGTGGTGAC
131 GAGGTGGTGGTGAC
684732 TTGTAAATGTAAGGAGGTGGAGGAGAGGGAGATGGTGGAGGTGGAGACTTGTAGTAGTATGGTGG
1 TTGTAAATGTAAGGAGGTGGAGGAGAGGGAGATGGTGGAGGTGGAGACTTGTAGTAGTATGGTGG
684797 TGGGGGACTAGGAGAAGGTGGAGGGGGAGACTTGTAGTAGTATGGTGGTGGAGGGCTAGGTGAGG
66 TGGGGGACTAGGAGAAGGTGGAGGGGGAGACTTGTAGTAGTATGGTGGTGGAGGGCTAGGTGAGG
684862 GAGGTGGTGGTGAC
131 GAGGTGGTGGTGAC
684876 TTGTAAATGTAAGGAGGTGGA-GA-A-GGAGATGGTGGAGGTGGAGACTTGTAGTAGTATGGTGG
1 TTGTAAATGTAAGGAGGTGGAGGAGAGGGAGATGGTGGAGGTGGAGACTTGTAGTAGTATGGTGG
* *
684938 TGGGGGATTAGGAGAAGGGGGAGGGGGAGACTTGTAGTAGTATGGTGGTGGAGGGCTAGGTGAGG
66 TGGGGGACTAGGAGAAGGTGGAGGGGGAGACTTGTAGTAGTATGGTGGTGGAGGGCTAGGTGAGG
685003 GAGGTGGTGGTGAC
131 GAGGTGGTGGTGAC
685017 TTGTAAATGTAAGGAGGTGG
1 TTGTAAATGTAAGGAGGTGG
685037 GGACTTGTAG
Statistics
Matches: 299, Mismatches: 3, Indels: 6
0.97 0.01 0.02
Matches are distributed among these distances:
141 182 0.61
142 2 0.01
143 3 0.01
144 112 0.37
ACGTcount: A:0.23, C:0.03, G:0.51, T:0.22
Consensus pattern (144 bp):
TTGTAAATGTAAGGAGGTGGAGGAGAGGGAGATGGTGGAGGTGGAGACTTGTAGTAGTATGGTGG
TGGGGGACTAGGAGAAGGTGGAGGGGGAGACTTGTAGTAGTATGGTGGTGGAGGGCTAGGTGAGG
GAGGTGGTGGTGAC
Found at i:685033 original size:120 final size:120
Alignment explanation
Indices: 684909--685141 Score: 324
Period size: 120 Copynumber: 1.9 Consensus size: 120
684899 AGGAGATGGT
* *
684909 GGAGGTGGAGACTTGTAGTAGTATGGTGGTGGGGGATTAGGAGAAGGGGGAGGGGGAGACTTGTA
1 GGAGGTGGAGACTTGTAGTAGTATGGTGGTGGGAGACTAGGAGAAGGGGGAGGGGGAGACTTGTA
* * * * *
684974 GTAGTATGGTGGTGGAGGG-CTAGGTGAGGGAGGTGGTGGTGACTTGTAAATGTAA
66 ATAATATGGTGGTGG-GGGACTAGGAGAGGGAGGAGGTGGAGACTTGTAAATGTAA
* * * * *
685029 GGAGGTGGGGACTTGTAGTAGTATGGTGGTGGGAGACTAGGAGATGGTGGAGGTGGTGACTTGTA
1 GGAGGTGGAGACTTGTAGTAGTATGGTGGTGGGAGACTAGGAGAAGGGGGAGGGGGAGACTTGTA
* *
685094 ATAATATGGTGGTGGGGGACTGGGAGAGGGTGGAGGTGGAGACTTGTA
66 ATAATATGGTGGTGGGGGACTAGGAGAGGGAGGAGGTGGAGACTTGTA
685142 GTAATAAGGA
Statistics
Matches: 98, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
119 3 0.03
120 95 0.97
ACGTcount: A:0.22, C:0.04, G:0.50, T:0.24
Consensus pattern (120 bp):
GGAGGTGGAGACTTGTAGTAGTATGGTGGTGGGAGACTAGGAGAAGGGGGAGGGGGAGACTTGTA
ATAATATGGTGGTGGGGGACTAGGAGAGGGAGGAGGTGGAGACTTGTAAATGTAA
Found at i:685057 original size:48 final size:47
Alignment explanation
Indices: 685029--685204 Score: 140
Period size: 48 Copynumber: 3.7 Consensus size: 47
685019 GTAAATGTAA
* * *
685029 GGAGGTGGGGACTTGTAGTAGTATGGTGGTGGGAGACTAGGAGATGGT
1 GGAGGTGGGGACTTGTAATAATATGGTGGT-GGAGACTAGGAAATGGT
* * * * *
685077 GGAGGTGGTGACTTGTAATAATATGGTGGTGGGGGACTGGGAGAGGGT
1 GGAGGTGGGGACTTGTAATAATATGGTGGT-GGAGACTAGGAAATGGT
* * * * * * *
685125 GGAGGTGGAGACTTGTAGTAATAAGGAGGCGGTGGAGA--GGGAGACGGT
1 GGAGGTGGGGACTTGTAATAAT-A--TGGTGGTGGAGACTAGGAAATGGT
* *
685173 GGAGGTGGAGACTTGTAATAGTATGGTGGTGG
1 GGAGGTGGGGACTTGTAATAATATGGTGGTGG
685205 TGAGTTGTAG
Statistics
Matches: 109, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
45 7 0.06
47 1 0.01
48 91 0.83
49 1 0.01
50 4 0.04
51 5 0.05
ACGTcount: A:0.23, C:0.05, G:0.49, T:0.23
Consensus pattern (47 bp):
GGAGGTGGGGACTTGTAATAATATGGTGGTGGAGACTAGGAAATGGT
Found at i:685110 original size:72 final size:72
Alignment explanation
Indices: 684957--685094 Score: 190
Period size: 72 Copynumber: 1.9 Consensus size: 72
684947 AGGAGAAGGG
* * *
684957 GGAGG-GGGAGACTTGTAGTAGTATGGTGGTGGAGGGCTAGGTGAGGGAGGTGGTGGTGACTTGT
1 GGAGGTGGG-GACTTGTAGTAGTATGGTGGTGGAGGACTAGGAGAGGGAGGAGGTGGTGACTTGT
*
685021 AAATGTAA
65 AAATATAA
* *
685029 GGAGGTGGGGACTTGTAGTAGTATGGTGGTGG-GAGACTAGGAGATGGTGGAGGTGGTGACTTGT
1 GGAGGTGGGGACTTGTAGTAGTATGGTGGTGGAG-GACTAGGAGAGGGAGGAGGTGGTGACTTGT
685093 AA
65 AA
685095 TAATATGGTG
Statistics
Matches: 59, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
71 1 0.02
72 55 0.93
73 3 0.05
ACGTcount: A:0.22, C:0.04, G:0.49, T:0.25
Consensus pattern (72 bp):
GGAGGTGGGGACTTGTAGTAGTATGGTGGTGGAGGACTAGGAGAGGGAGGAGGTGGTGACTTGTA
AATATAA
Found at i:685188 original size:168 final size:167
Alignment explanation
Indices: 684899--685219 Score: 398
Period size: 168 Copynumber: 1.9 Consensus size: 167
684889 GAGGTGGAGA
* * *
684899 AGGAGATGGTGGAGGTGGAGACTTGTAGTAGTATGGTGGTGGGGGATTAGGAGAAGGGGGAGGGG
1 AGGAGATGGTGGAGGTGGAGACTTGTAATAATATGGTGGTGGGGGACTAGGAGAAGGGGGAGGGG
* * * * * *
684964 GAGACTTGTAGTAGTATGGTGGTGGAGGGCTAGGTGAGGGAGGTGGTGGTGACTTGTAA-ATGTA
66 GAGACTTGTAGTAATAAGGAGGCGGAGGGC-AGGTGAGGGAGGAGGTGGAGACTTGTAATA-GTA
685028 AGGAGGTGGGGACTTGTAGTAGTATGGTGGTGGGAGACT
129 AGGAGGTGGGGACTTGTAGTAGTATGGTGGTGGGAGACT
* * *
685067 AGGAGATGGTGGAGGTGGTGACTTGTAATAATATGGTGGTGGGGGACTGGGAG-AGGGTGGAGGT
1 AGGAGATGGTGGAGGTGGAGACTTGTAATAATATGGTGGTGGGGGACTAGGAGAAGGG-GGAGGG
* *
685131 GGAGACTTGTAGTAATAAGGAGGCGGTGGAG-AGG-GAGACGGTGGAGGTGGAGACTTGTAATAG
65 GGAGACTTGTAGTAATAAGGAGGCGGAGG-GCAGGTGAG--GGAGGAGGTGGAGACTTGTAATAG
* * * *
685194 TATGGTGGTGGTGAGTTGTAGTAGTA
127 TAAGGAGGTGGGGACTTGTAGTAGTA
685220 AGGAGGAGGA
Statistics
Matches: 130, Mismatches: 18, Indels: 10
0.82 0.11 0.06
Matches are distributed among these distances:
166 3 0.02
167 7 0.05
168 118 0.91
169 2 0.02
ACGTcount: A:0.23, C:0.04, G:0.49, T:0.24
Consensus pattern (167 bp):
AGGAGATGGTGGAGGTGGAGACTTGTAATAATATGGTGGTGGGGGACTAGGAGAAGGGGGAGGGG
GAGACTTGTAGTAATAAGGAGGCGGAGGGCAGGTGAGGGAGGAGGTGGAGACTTGTAATAGTAAG
GAGGTGGGGACTTGTAGTAGTATGGTGGTGGGAGACT
Found at i:685225 original size:96 final size:94
Alignment explanation
Indices: 685005--685231 Score: 231
Period size: 96 Copynumber: 2.4 Consensus size: 94
684995 AGGTGAGGGA
* * * * * *
685005 GGTGGTGGTGACTTGTAAATGTAAGGAGGTGGGGACTTGTAGTAGTATGGTGGTGGGAGACTAGG
1 GGTGGTGGTGACTTGTAGA-GTAAGGAGGTGGAGACTTGTAGTAATAAGGAGGGGGGAGAC-AGG
* *
685070 AGATGGTGGAGGTGGTGACTTGTAATAATAT
64 AGACGGTGGAGGTGGAGACTTGTAATAATAT
* * * *** *
685101 GGTGGTGGGGGACTGGGAGAGGGTGGAGGTGGAGACTTGTAGTAATAAGGAGGCGGTGGAGA-GG
1 GGTGGT-GGTGACTTGTAGAGTAAGGAGGTGGAGACTTGTAGTAATAAGGAGG-GG-GGAGACAG
*
685165 GAGACGGTGGAGGTGGAGACTTGTAATAGTAT
63 GAGACGGTGGAGGTGGAGACTTGTAATAATAT
* *
685197 GGTGGTGGTGAGTTGTAGTAGTAAGGAGGAGGAGA
1 GGTGGTGGTGACTTGTAG-AGTAAGGAGGTGGAGA
685232 ATGTTTGTCC
Statistics
Matches: 103, Mismatches: 24, Indels: 8
0.76 0.18 0.06
Matches are distributed among these distances:
95 8 0.08
96 80 0.78
97 10 0.10
98 5 0.05
ACGTcount: A:0.24, C:0.04, G:0.48, T:0.24
Consensus pattern (94 bp):
GGTGGTGGTGACTTGTAGAGTAAGGAGGTGGAGACTTGTAGTAATAAGGAGGGGGGAGACAGGAG
ACGGTGGAGGTGGAGACTTGTAATAATAT
Found at i:687316 original size:86 final size:87
Alignment explanation
Indices: 687215--687387 Score: 339
Period size: 86 Copynumber: 2.0 Consensus size: 87
687205 TGAGGGAATA
687215 ATCACATAAACAAAATTTTTGCACCCCATTAATTAATTTTCAGCAGGGTAGAGGCGGAGAGCTGA
1 ATCACATAAACAAAATTTTTGCACCCCATTAATTAATTTTCAGCAGGGTAGAGGCGGAGAGCTGA
687280 TAACAGT-CCTCCTGCACCCCC
66 TAACAGTCCCTCCTGCACCCCC
687301 ATCACATAAACAAAATTTTTGCACCCCATTAATTAATTTTCAGCAGGGTAGAGGCGGAGAGCTGA
1 ATCACATAAACAAAATTTTTGCACCCCATTAATTAATTTTCAGCAGGGTAGAGGCGGAGAGCTGA
687366 TAACAGTCCCTCCTGCACCCCC
66 TAACAGTCCCTCCTGCACCCCC
687388 CCCCCCCCAT
Statistics
Matches: 86, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
86 72 0.84
87 14 0.16
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.24
Consensus pattern (87 bp):
ATCACATAAACAAAATTTTTGCACCCCATTAATTAATTTTCAGCAGGGTAGAGGCGGAGAGCTGA
TAACAGTCCCTCCTGCACCCCC
Found at i:695015 original size:22 final size:21
Alignment explanation
Indices: 694966--695020 Score: 53
Period size: 22 Copynumber: 2.6 Consensus size: 21
694956 TTTCAATTAC
694966 TAAT-TTATTAATTTTATAAA
1 TAATATTATTAATTTTATAAA
694986 TCAA-ATTATTTAATTATT-TAAA
1 T-AATATTA-TTAATT-TTATAAA
695008 TAATATTAATTAA
1 TAATATT-ATTAA
695021 GTCAATGTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
20 1 0.03
21 7 0.24
22 18 0.62
23 3 0.10
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (21 bp):
TAATATTATTAATTTTATAAA
Found at i:707743 original size:16 final size:17
Alignment explanation
Indices: 707719--707753 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
707709 TTATTTATAT
707719 TATTAAAATTTTATCTA
1 TATTAAAATTTTATCTA
*
707736 TATT-AAATTTTATTTA
1 TATTAAAATTTTATCTA
707752 TA
1 TA
707754 CTATTTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (17 bp):
TATTAAAATTTTATCTA
Found at i:707751 original size:20 final size:21
Alignment explanation
Indices: 707728--707766 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
707718 TTATTAAAAT
707728 TTTAT-CTATATTAAATTTTA
1 TTTATACTATATTAAATTTTA
*
707748 TTTATACTATTTTAAATTT
1 TTTATACTATATTAAATTT
707767 CAGCTAGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (21 bp):
TTTATACTATATTAAATTTTA
Found at i:708721 original size:158 final size:158
Alignment explanation
Indices: 708433--708745 Score: 626
Period size: 158 Copynumber: 2.0 Consensus size: 158
708423 ATAGTCATCA
708433 GATGATATGCAACCTTTTTTGGATATAGTTTGTAATTAATGTTGTTTTATTTTAACATTGTCAGA
1 GATGATATGCAACCTTTTTTGGATATAGTTTGTAATTAATGTTGTTTTATTTTAACATTGTCAGA
708498 CATTTTCTATGTATTTATTTTTCTATTATCGTTTTGATTCTCAACATTGTAGATGCTGGTAAAGT
66 CATTTTCTATGTATTTATTTTTCTATTATCGTTTTGATTCTCAACATTGTAGATGCTGGTAAAGT
708563 TGATTTGATAATGAATGTTGTTGAAACG
131 TGATTTGATAATGAATGTTGTTGAAACG
708591 GATGATATGCAACCTTTTTTGGATATAGTTTGTAATTAATGTTGTTTTATTTTAACATTGTCAGA
1 GATGATATGCAACCTTTTTTGGATATAGTTTGTAATTAATGTTGTTTTATTTTAACATTGTCAGA
708656 CATTTTCTATGTATTTATTTTTCTATTATCGTTTTGATTCTCAACATTGTAGATGCTGGTAAAGT
66 CATTTTCTATGTATTTATTTTTCTATTATCGTTTTGATTCTCAACATTGTAGATGCTGGTAAAGT
708721 TGATTTGATAATGAATGTTGTTGAA
131 TGATTTGATAATGAATGTTGTTGAA
708746 CGTCCAAGTG
Statistics
Matches: 155, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
158 155 1.00
ACGTcount: A:0.27, C:0.09, G:0.17, T:0.48
Consensus pattern (158 bp):
GATGATATGCAACCTTTTTTGGATATAGTTTGTAATTAATGTTGTTTTATTTTAACATTGTCAGA
CATTTTCTATGTATTTATTTTTCTATTATCGTTTTGATTCTCAACATTGTAGATGCTGGTAAAGT
TGATTTGATAATGAATGTTGTTGAAACG
Found at i:720303 original size:30 final size:30
Alignment explanation
Indices: 720269--720325 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
720259 ATACGTTTAG
*
720269 TACCTAAACTATTGATTTTATTTCGTTGTT
1 TACCTAAACTATCGATTTTATTTCGTTGTT
*
720299 TACCTAAATTATCGATTTTATTTCGTT
1 TACCTAAACTATCGATTTTATTTCGTT
720326 TTAGCACCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.25, C:0.14, G:0.09, T:0.53
Consensus pattern (30 bp):
TACCTAAACTATCGATTTTATTTCGTTGTT
Found at i:721148 original size:20 final size:21
Alignment explanation
Indices: 721123--721215 Score: 100
Period size: 21 Copynumber: 4.5 Consensus size: 21
721113 TTTTCCCAAT
*
721123 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
721143 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
*
721164 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
721184 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
721205 TCGCAATGCGA
1 TCGCAATGCGA
721216 TACTGACTAT
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 27 0.47
21 31 0.53
ACGTcount: A:0.40, C:0.18, G:0.25, T:0.17
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:721229 original size:20 final size:20
Alignment explanation
Indices: 721204--721318 Score: 88
Period size: 20 Copynumber: 5.7 Consensus size: 20
721194 AATTGGGAAA
*
721204 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* * * *
721224 ATCGCAATGTGATAAT-ACAAA
1 ATCGCAACGCGATACTGAC--T
* * *
721245 ATTGCAACGAGATACTTACT
1 ATCGCAACGCGATACTGACT
*
721265 TTCGCAACGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* *
721285 TTCGCAACGCGATTCTGACT
1 ATCGCAACGCGATACTGACT
* *
721305 TTCACAACGCGATA
1 ATCGCAACGCGATA
721319 ATACATAATC
Statistics
Matches: 77, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
19 2 0.03
20 61 0.79
21 12 0.16
22 2 0.03
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.26
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:721230 original size:41 final size:41
Alignment explanation
Indices: 721123--721215 Score: 186
Period size: 41 Copynumber: 2.3 Consensus size: 41
721113 TTTTCCCAAT
721123 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
721164 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
721205 TCGCAATGCGA
1 TCGCAATGCGA
721216 TACTGACTAT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.40, C:0.18, G:0.25, T:0.17
Consensus pattern (41 bp):
TCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGAAAA
Found at i:721847 original size:20 final size:20
Alignment explanation
Indices: 721800--721857 Score: 64
Period size: 19 Copynumber: 3.0 Consensus size: 20
721790 GCGATTCTCT
**
721800 CGTTGCGATAGTCAAATTCG
1 CGTTGCGATAGTCATTTTCG
721820 CG-TGCGATAGTCATTTTCG
1 CGTTGCGATAGTCATTTTCG
* **
721839 TGTTGCGATTTTCATTTTC
1 CGTTGCGATAGTCATTTTC
721858 AGAAACTATT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
19 16 0.50
20 16 0.50
ACGTcount: A:0.17, C:0.19, G:0.22, T:0.41
Consensus pattern (20 bp):
CGTTGCGATAGTCATTTTCG
Found at i:723715 original size:19 final size:20
Alignment explanation
Indices: 723661--723706 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
723651 TAGTTTACTT
*
723661 TCGCAACACGAAAATGACTA
1 TCGCAACACGGAAATGACTA
*
723681 TCGCAACACGGAAATGGCTA
1 TCGCAACACGGAAATGACTA
723701 TCGCAA
1 TCGCAA
723707 TGCGAAATGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.39, C:0.26, G:0.20, T:0.15
Consensus pattern (20 bp):
TCGCAACACGGAAATGACTA
Found at i:723735 original size:14 final size:14
Alignment explanation
Indices: 723716--723771 Score: 67
Period size: 14 Copynumber: 3.7 Consensus size: 14
723706 ATGCGAAATG
723716 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
723730 AAAATCGCAATGCGAA
1 AAAATCGCAA--CGAC
723746 ATGAAATCGCAACGAC
1 A--AAATCGCAACGAC
723762 AAAATCGCAA
1 AAAATCGCAA
723772 TGCGATTTGT
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
14 19 0.53
16 8 0.22
18 9 0.25
ACGTcount: A:0.50, C:0.23, G:0.16, T:0.11
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:723758 original size:32 final size:33
Alignment explanation
Indices: 723700--723776 Score: 147
Period size: 32 Copynumber: 2.4 Consensus size: 33
723690 GGAAATGGCT
723700 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
723733 ATCGCAATGCGAAATG-AAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
723765 ATCGCAATGCGA
1 ATCGCAATGCGA
723777 TTTGTGTTTC
Statistics
Matches: 44, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
32 28 0.64
33 16 0.36
ACGTcount: A:0.45, C:0.22, G:0.19, T:0.13
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGACAAA
Found at i:723811 original size:14 final size:14
Alignment explanation
Indices: 723788--723845 Score: 62
Period size: 14 Copynumber: 3.9 Consensus size: 14
723778 TTGTGTTTCG
723788 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
* *
723802 CGTTGTGATTTCATTT
1 CGTTGCGATTT--TGT
723818 CGCATTGCGATTTTGT
1 CG--TTGCGATTTTGT
723834 CGTTGCGATTTT
1 CGTTGCGATTTT
723846 CATTTCGCAT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
14 20 0.56
16 8 0.22
18 8 0.22
ACGTcount: A:0.10, C:0.16, G:0.24, T:0.50
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:723819 original size:32 final size:33
Alignment explanation
Indices: 723783--723861 Score: 133
Period size: 32 Copynumber: 2.4 Consensus size: 33
723773 GCGATTTGTG
* *
723783 TTTCGCGTTGCGATTTTGTCGTTGTGA-TTTCA
1 TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
723815 TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
1 TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
723848 TTTCGCATTGCGAT
1 TTTCGCATTGCGAT
723862 AGCCATTTCC
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
32 25 0.57
33 19 0.43
ACGTcount: A:0.11, C:0.18, G:0.23, T:0.48
Consensus pattern (33 bp):
TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
Found at i:723860 original size:19 final size:19
Alignment explanation
Indices: 723810--723903 Score: 72
Period size: 19 Copynumber: 5.2 Consensus size: 19
723800 GTCGTTGTGA
723810 TTTCATTTCGCATTGCGA-
1 TTTCATTTCGCATTGCGAT
*
723828 TTT--TGTCG--TTGCGAT
1 TTTCATTTCGCATTGCGAT
723843 TTTCATTTCGCATTGCGAT
1 TTTCATTTCGCATTGCGAT
*** *
723862 AGCCATTTCCGCGTTGCGAT
1 TTTCATTT-CGCATTGCGAT
** *
723882 AGTCATTTCGCGTTGCGAT
1 TTTCATTTCGCATTGCGAT
723901 TTT
1 TTT
723904 AAGTTTCGTG
Statistics
Matches: 61, Mismatches: 9, Indels: 11
0.75 0.11 0.14
Matches are distributed among these distances:
14 6 0.10
15 3 0.05
16 4 0.07
17 4 0.07
18 3 0.05
19 24 0.39
20 17 0.28
ACGTcount: A:0.14, C:0.21, G:0.21, T:0.44
Consensus pattern (19 bp):
TTTCATTTCGCATTGCGAT
Found at i:723880 original size:20 final size:19
Alignment explanation
Indices: 723846--723900 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 19
723836 TTGCGATTTT
*
723846 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
723865 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
723885 CATTTCGCGTTGCGAT
1 CATTTCGCGTTGCGAT
723901 TTTAAGTTTC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 16 0.48
20 17 0.52
ACGTcount: A:0.16, C:0.25, G:0.24, T:0.35
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:724003 original size:32 final size:31
Alignment explanation
Indices: 723964--724052 Score: 115
Period size: 32 Copynumber: 2.8 Consensus size: 31
723954 TCAATCGCAA
* *
723964 TGCGATTTGTGTTTCGCGTTGCGATTTGTCGT
1 TGCGATTT-TATTTCGCATTGCGATTTGTCGT
* *
723996 TGTGATTTCATTTCGCATTGCGATTTTGTCGT
1 TGCGATTTTATTTCGCATTGCGA-TTTGTCGT
724028 TGCGATTTTCATTTCGCATTGCGAT
1 TGCGATTTT-ATTTCGCATTGCGAT
724053 AGCCATTTCC
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
31 12 0.24
32 23 0.47
33 14 0.29
ACGTcount: A:0.11, C:0.17, G:0.25, T:0.47
Consensus pattern (31 bp):
TGCGATTTTATTTCGCATTGCGATTTGTCGT
Found at i:724043 original size:33 final size:32
Alignment explanation
Indices: 723975--724052 Score: 122
Period size: 33 Copynumber: 2.4 Consensus size: 32
723965 GCGATTTGTG
* *
723975 TTTCGCGTTGCGA-TTTGTCGTTGTGATTTCA
1 TTTCGCATTGCGATTTTGTCGTTGCGATTTCA
724006 TTTCGCATTGCGATTTTGTCGTTGCGATTTTCA
1 TTTCGCATTGCGATTTTGTCGTTGCGA-TTTCA
724039 TTTCGCATTGCGAT
1 TTTCGCATTGCGAT
724053 AGCCATTTCC
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
31 12 0.28
32 12 0.28
33 19 0.44
ACGTcount: A:0.12, C:0.18, G:0.23, T:0.47
Consensus pattern (32 bp):
TTTCGCATTGCGATTTTGTCGTTGCGATTTCA
Found at i:724071 original size:20 final size:19
Alignment explanation
Indices: 724037--724092 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 19
724027 TTGCGATTTT
*
724037 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
724056 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
724076 CATTTTCGCGTTGCGAT
1 CA-TTTCGCGTTGCGAT
724093 TTTAAGTTTC
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
19 5 0.15
20 25 0.76
21 3 0.09
ACGTcount: A:0.16, C:0.25, G:0.23, T:0.36
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:724098 original size:192 final size:193
Alignment explanation
Indices: 723764--724144 Score: 721
Period size: 191 Copynumber: 2.0 Consensus size: 193
723754 GCAACGACAA
723764 AATCGCAATGCGATTTGTGTTTCGCGTTGCGATTTTGTCGTTGTGATTTCATTTCGCATTGCGAT
1 AATCGCAATGCGATTTGTGTTTCGCGTTGCGATTTTGTCGTTGTGATTTCATTTCGCATTGCGAT
723829 TTTGTCGTTGCGATTTTCATTTCGCATTGCGATAGCCATTTCCGCGTTGCGATAGTCATTTCGCG
66 TTTGTCGTTGCGATTTTCATTTCGCATTGCGATAGCCATTTCCGCGTTGCGATAGTCATTTCGCG
723894 TTGCGATTTTAAGTTTCGTGTTGCGAAAGTAAAC-TCTTCTTCTGGAATGTTTATATGTTGTC
131 TTGCGATTTTAAGTTTCGTGTTGCGAAAGTAAACTTCTTCTTCTGGAATGTTTATATGTTGTC
723956 AATCGCAATGCGATTTGTGTTTCGCGTTGCGA-TTTGTCGTTGTGATTTCATTTCGCATTGCGAT
1 AATCGCAATGCGATTTGTGTTTCGCGTTGCGATTTTGTCGTTGTGATTTCATTTCGCATTGCGAT
724020 TTTGTCGTTGCGATTTTCATTTCGCATTGCGATAGCCATTTCCGCGTTGCGATAGTCATTTTCGC
66 TTTGTCGTTGCGATTTTCATTTCGCATTGCGATAGCCATTTCCGCGTTGCGATAGTCA-TTTCGC
724085 GTTGCGATTTTAAGTTTCGTGTTGCGAAAGTAAACTATTCTTCTTCTGGAATGTTTATAT
130 GTTGCGATTTTAAGTTTCGTGTTGCGAAAGTAAAC--TTCTTCTTCTGGAATGTTTATAT
724145 ATGTTGTCCT
Statistics
Matches: 185, Mismatches: 0, Indels: 5
0.97 0.00 0.03
Matches are distributed among these distances:
191 90 0.49
192 73 0.39
195 22 0.12
ACGTcount: A:0.17, C:0.18, G:0.23, T:0.43
Consensus pattern (193 bp):
AATCGCAATGCGATTTGTGTTTCGCGTTGCGATTTTGTCGTTGTGATTTCATTTCGCATTGCGAT
TTTGTCGTTGCGATTTTCATTTCGCATTGCGATAGCCATTTCCGCGTTGCGATAGTCATTTCGCG
TTGCGATTTTAAGTTTCGTGTTGCGAAAGTAAACTTCTTCTTCTGGAATGTTTATATGTTGTC
Found at i:725924 original size:14 final size:14
Alignment explanation
Indices: 725905--725940 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
725895 ATTGTTTAAT
725905 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
* *
725919 TGATTTGTAAATGT
1 TGATTTGTAAAAGA
725933 TGATTTGT
1 TGATTTGT
725941 TTAATTGATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.47
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:726057 original size:14 final size:14
Alignment explanation
Indices: 726038--726091 Score: 54
Period size: 14 Copynumber: 3.5 Consensus size: 14
726028 CGAAATGGCT
726038 ATCGCAACGAGAAA
1 ATCGCAACGAGAAA
726052 ATCGCAATGCGAAATGAAA
1 ATCGCAA--CG--A-GAAA
*
726071 ATCGCAACGAAAAA
1 ATCGCAACGAGAAA
726085 ATCGCAA
1 ATCGCAA
726092 TGCGATTTTC
Statistics
Matches: 34, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
14 17 0.50
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 11 0.32
ACGTcount: A:0.50, C:0.20, G:0.19, T:0.11
Consensus pattern (14 bp):
ATCGCAACGAGAAA
Found at i:726064 original size:33 final size:33
Alignment explanation
Indices: 726019--726096 Score: 111
Period size: 33 Copynumber: 2.4 Consensus size: 33
726009 AAAACAGACT
* *** *
726019 ATCGCAACGCGAAATGGCTATCGCAACGAGAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGAAAAA
726052 ATCGCAATGCGAAATGAAAATCGCAACGAAAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGAAAAA
726085 ATCGCAATGCGA
1 ATCGCAATGCGA
726097 TTTTCTCGTT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 40 1.00
ACGTcount: A:0.44, C:0.22, G:0.22, T:0.13
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAAAAA
Found at i:726070 original size:19 final size:18
Alignment explanation
Indices: 726047--726096 Score: 63
Period size: 19 Copynumber: 2.9 Consensus size: 18
726037 TATCGCAACG
726047 AGAAAATCGCAATGCGAA
1 AGAAAATCGCAATGCGAA
726065 ATGAAAATCGCAA--CG-A
1 A-GAAAATCGCAATGCGAA
726081 A-AAAATCGCAATGCGA
1 AGAAAATCGCAATGCGA
726097 TTTTCTCGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
14 10 0.36
16 4 0.14
17 2 0.07
18 1 0.04
19 11 0.39
ACGTcount: A:0.50, C:0.18, G:0.20, T:0.12
Consensus pattern (18 bp):
AGAAAATCGCAATGCGAA
Found at i:726121 original size:20 final size:20
Alignment explanation
Indices: 726096--726133 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
726086 TCGCAATGCG
*
726096 ATTTTCTCGTTGCGATAGCC
1 ATTTTCGCGTTGCGATAGCC
726116 ATTTTCGCGTTGCGATAG
1 ATTTTCGCGTTGCGATAG
726134 TCAAATGAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.16, C:0.21, G:0.24, T:0.39
Consensus pattern (20 bp):
ATTTTCGCGTTGCGATAGCC
Found at i:727096 original size:24 final size:24
Alignment explanation
Indices: 727069--727122 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
727059 GTATTCAAAA
* *
727069 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATATTGGTCAATACACGGAC
*
727093 TTTGATATTGGTCAATACACGGAT
1 TTTGATATTGGTCAATACACGGAC
727117 TTTGAT
1 TTTGAT
727123 GATGTATCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.39
Consensus pattern (24 bp):
TTTGATATTGGTCAATACACGGAC
Found at i:727313 original size:12 final size:12
Alignment explanation
Indices: 727296--727320 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
727286 ATATAATCTT
727296 GAAGAAGAAAAA
1 GAAGAAGAAAAA
727308 GAAGAAGAAAAA
1 GAAGAAGAAAAA
727320 G
1 G
727321 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:729625 original size:19 final size:19
Alignment explanation
Indices: 729603--729727 Score: 100
Period size: 19 Copynumber: 7.4 Consensus size: 19
729593 GGAAATTACT
729603 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
729622 ATCGCAAT--G--A-GAGA
1 ATCGCAATGCGAAATGAAA
729636 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
* *
729655 ATCGCAA--CG--CT-AAT
1 ATCGCAATGCGAAATGAAA
*
729669 TTCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
729688 ATCGCAA--CG-AA-G-GA
1 ATCGCAATGCGAAATGAAA
729702 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
729721 ATCGCAA
1 ATCGCAA
729728 CTCGAATTTA
Statistics
Matches: 81, Mismatches: 10, Indels: 30
0.67 0.08 0.25
Matches are distributed among these distances:
14 27 0.33
15 3 0.04
16 7 0.09
17 7 0.09
18 3 0.04
19 34 0.42
ACGTcount: A:0.44, C:0.18, G:0.22, T:0.16
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:729645 original size:33 final size:32
Alignment explanation
Indices: 729603--729728 Score: 182
Period size: 33 Copynumber: 3.8 Consensus size: 32
729593 GGAAATTACT
*
729603 ATCGCAATGCGAAATGAAAATCGCAATGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGA-AGA
*
729636 ATCGCAATGCGAAATGAAAATCGCAACGCTAA-T
1 ATCGCAATGCGAAATGAAAATCGCAACG--AAGA
*
729669 TTCGCAATGCGAAATGAAAATCGCAACGAAGGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAA-GA
729702 ATCGCAATGCGAAATGAAAATCGCAAC
1 ATCGCAATGCGAAATGAAAATCGCAAC
729729 TCGAATTTAA
Statistics
Matches: 84, Mismatches: 5, Indels: 8
0.87 0.05 0.08
Matches are distributed among these distances:
31 2 0.02
33 80 0.95
34 1 0.01
35 1 0.01
ACGTcount: A:0.44, C:0.19, G:0.21, T:0.16
Consensus pattern (32 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAAGA
Found at i:729710 original size:66 final size:66
Alignment explanation
Indices: 729604--729728 Score: 225
Period size: 66 Copynumber: 1.9 Consensus size: 66
729594 GAAATTACTA
*
729604 TCGCAATGCGAAATGAAAATCGCAATGAGAGAATCGCAATGCGAAATGAAAATCGCAACGCTAAT
1 TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGCTAAT
729669 T
66 T
729670 TCGCAATGCGAAATGAAAATCGCAACGA-AGGAATCGCAATGCGAAATGAAAATCGCAAC
1 TCGCAATGCGAAATGAAAATCGCAACGAGA-GAATCGCAATGCGAAATGAAAATCGCAAC
729729 TCGAATTTAA
Statistics
Matches: 57, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
65 1 0.02
66 56 0.98
ACGTcount: A:0.43, C:0.19, G:0.22, T:0.16
Consensus pattern (66 bp):
TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGCTAAT
T
Found at i:729764 original size:14 final size:14
Alignment explanation
Indices: 729745--729800 Score: 58
Period size: 14 Copynumber: 3.6 Consensus size: 14
729735 TTAATTTCGT
729745 GTTGCGATTCTCTC
1 GTTGCGATTCTCTC
*
729759 GTTGCGATTTTCATTTCGC
1 GTTGCGA--TTC---TCTC
729778 GTTGCGATTCTCTC
1 GTTGCGATTCTCTC
729792 GTTGCGATT
1 GTTGCGATT
729801 TTCATTTCGC
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
14 19 0.54
16 3 0.09
17 3 0.09
19 10 0.29
ACGTcount: A:0.09, C:0.23, G:0.23, T:0.45
Consensus pattern (14 bp):
GTTGCGATTCTCTC
Found at i:729782 original size:19 final size:19
Alignment explanation
Indices: 729758--729818 Score: 69
Period size: 19 Copynumber: 3.5 Consensus size: 19
729748 GCGATTCTCT
729758 CGTTGCGATTTTCATTTCG
1 CGTTGCGATTTTCATTTCG
*
729777 CGTTGCGA--TTC---TCT
1 CGTTGCGATTTTCATTTCG
729791 CGTTGCGATTTTCATTTCG
1 CGTTGCGATTTTCATTTCG
*
729810 CATTGCGAT
1 CGTTGCGAT
729819 AGTACTTTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 10
0.72 0.06 0.21
Matches are distributed among these distances:
14 10 0.29
16 3 0.09
17 3 0.09
19 18 0.53
ACGTcount: A:0.11, C:0.23, G:0.21, T:0.44
Consensus pattern (19 bp):
CGTTGCGATTTTCATTTCG
Found at i:729782 original size:33 final size:33
Alignment explanation
Indices: 729738--729818 Score: 144
Period size: 33 Copynumber: 2.5 Consensus size: 33
729728 CTCGAATTTA
*
729738 ATTTCGTGTTGCGATTCTCTCGTTGCGATTTTC
1 ATTTCGCGTTGCGATTCTCTCGTTGCGATTTTC
729771 ATTTCGCGTTGCGATTCTCTCGTTGCGATTTTC
1 ATTTCGCGTTGCGATTCTCTCGTTGCGATTTTC
*
729804 ATTTCGCATTGCGAT
1 ATTTCGCGTTGCGAT
729819 AGTACTTTTT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 46 1.00
ACGTcount: A:0.11, C:0.22, G:0.21, T:0.46
Consensus pattern (33 bp):
ATTTCGCGTTGCGATTCTCTCGTTGCGATTTTC
Found at i:729941 original size:13 final size:14
Alignment explanation
Indices: 729925--729960 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
729915 CATCAATTAA
729925 ACAAATCAAC-TTT
1 ACAAATCAACTTTT
*
729938 ACAAATCACCTTTT
1 ACAAATCAACTTTT
729952 ACAAATCAA
1 ACAAATCAA
729961 TTAAACAATC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
13 9 0.45
14 11 0.55
ACGTcount: A:0.47, C:0.25, G:0.00, T:0.28
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:731377 original size:42 final size:41
Alignment explanation
Indices: 731318--731523 Score: 155
Period size: 42 Copynumber: 4.9 Consensus size: 41
731308 GTGAATCGGG
* *
731318 CTCTTGAATGGTGGGAGGGACCTCTTCAACGATGACAGTGGC
1 CTCTTGAACGGTGGGAGGGA-CTCTTCAAGGATGACAGTGGC
* * *
731360 CTCTTGAACGGTGGGAGGGGACTC-TCGAGGAATGATAGGGGC
1 CTCTTGAACGGTGGGA-GGGACTCTTCAAGG-ATGACAGTGGC
* * * * * *
731402 CTCTTCAATGATAGGAGTGGACTCTTGAGGGATGACAGTGGC
1 CTCTTGAACGGTGGGAG-GGACTCTTCAAGGATGACAGTGGC
* * *
731444 CTCTTGAACGGTGGGAGGGGACTC-TCGAGGAATGATAGGGGC
1 CTCTTGAACGGTGGGA-GGGACTCTTCAAGG-ATGACAGTGGC
* * * * * *
731486 CTCTTCAATGATAGGAGTGGACTCTTGAGGGATGACAG
1 CTCTTGAACGGTGGGAG-GGACTCTTCAAGGATGACAG
731524 GCGAGTCGGG
Statistics
Matches: 125, Mismatches: 31, Indels: 16
0.73 0.18 0.09
Matches are distributed among these distances:
41 9 0.07
42 105 0.84
43 11 0.09
ACGTcount: A:0.23, C:0.17, G:0.37, T:0.23
Consensus pattern (41 bp):
CTCTTGAACGGTGGGAGGGACTCTTCAAGGATGACAGTGGC
Found at i:731384 original size:21 final size:21
Alignment explanation
Indices: 731318--731384 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
731308 GTGAATCGGG
*
731318 CTCTTGAATGGTGGGA-GGGA
1 CTCTTGAACGGTGGGAGGGGA
* * ** * *
731338 CCTCTTCAACGATGACAGTGGC
1 -CTCTTGAACGGTGGGAGGGGA
731360 CTCTTGAACGGTGGGAGGGGA
1 CTCTTGAACGGTGGGAGGGGA
731381 CTCT
1 CTCT
731385 CGAGGAATGA
Statistics
Matches: 32, Mismatches: 13, Indels: 2
0.68 0.28 0.04
Matches are distributed among these distances:
21 30 0.94
22 2 0.06
ACGTcount: A:0.19, C:0.21, G:0.36, T:0.24
Consensus pattern (21 bp):
CTCTTGAACGGTGGGAGGGGA
Found at i:731459 original size:84 final size:84
Alignment explanation
Indices: 731348--731523 Score: 352
Period size: 84 Copynumber: 2.1 Consensus size: 84
731338 CCTCTTCAAC
731348 GATGACAGTGGCCTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGGGGCCTCTTCAATGA
1 GATGACAGTGGCCTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGGGGCCTCTTCAATGA
731413 TAGGAGTGGACTCTTGAGG
66 TAGGAGTGGACTCTTGAGG
731432 GATGACAGTGGCCTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGGGGCCTCTTCAATGA
1 GATGACAGTGGCCTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGGGGCCTCTTCAATGA
731497 TAGGAGTGGACTCTTGAGG
66 TAGGAGTGGACTCTTGAGG
731516 GATGACAG
1 GATGACAG
731524 GCGAGTCGGG
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
84 92 1.00
ACGTcount: A:0.23, C:0.16, G:0.38, T:0.22
Consensus pattern (84 bp):
GATGACAGTGGCCTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGGGGCCTCTTCAATGA
TAGGAGTGGACTCTTGAGG
Found at i:731912 original size:91 final size:90
Alignment explanation
Indices: 731731--731917 Score: 286
Period size: 91 Copynumber: 2.0 Consensus size: 90
731721 TATTTTCAAA
* *
731731 ACTTCAACCAAAAGATAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAATTTA
1 ACTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTT--A-AATAAACAATTTA
731796 GCAGAATTGGCAGCAACCGAATAAATTT
63 GCAGAATTGGCAGCAACCGAATAAATTT
*
731824 ACTTCAACCAAAAGACAAAACAAAAAGACAAATACTAACTTCACAGTGTT-AATAAACAGTTTAG
1 ACTTCAACCAAAAGACAAAAC--AAAGACAAATACTAACTTCACAGTGTTAAATAAACAATTTAG
*
731888 CAGTATTGGCAGCAACCGAATAAATTT
64 CAGAATTGGCAGCAACCGAATAAATTT
731915 ACT
1 ACT
731918 AAGCAATCTA
Statistics
Matches: 88, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
91 41 0.47
93 20 0.23
95 27 0.31
ACGTcount: A:0.48, C:0.19, G:0.12, T:0.22
Consensus pattern (90 bp):
ACTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAATAAACAATTTAGCA
GAATTGGCAGCAACCGAATAAATTT
Found at i:732120 original size:63 final size:63
Alignment explanation
Indices: 732053--732202 Score: 160
Period size: 63 Copynumber: 2.4 Consensus size: 63
732043 CCATCTCACT
* *
732053 TAGAGCGA-CAACCTCAC-CACGTAAAGTAGACACCTCCACACGCCATGCACCATCGTTATCGCG
1 TAGAG-GACCAACCTC-CTCACGCAAAGCAGACACCTCCACACGCCATGCACCATCGTTATCGCG
* * * * ***
732116 TAGAGTACCGATCTCCTCACGCAAGGCATTGACCTCCACACGCCATGCACCATCGTTATCGCG
1 TAGAGGACCAACCTCCTCACGCAAAGCAGACACCTCCACACGCCATGCACCATCGTTATCGCG
* * *
732179 TAGAGTACCGATCTCCTCACGCAA
1 TAGAGGACCAACCTCCTCACGCAA
732203 GGCATTGACC
Statistics
Matches: 76, Mismatches: 9, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
62 2 0.03
63 74 0.97
ACGTcount: A:0.27, C:0.36, G:0.18, T:0.19
Consensus pattern (63 bp):
TAGAGGACCAACCTCCTCACGCAAAGCAGACACCTCCACACGCCATGCACCATCGTTATCGCG
Found at i:732203 original size:63 final size:63
Alignment explanation
Indices: 732084--732214 Score: 262
Period size: 63 Copynumber: 2.1 Consensus size: 63
732074 TAAAGTAGAC
732084 ACCTCCACACGCCATGCACCATCGTTATCGCGTAGAGTACCGATCTCCTCACGCAAGGCATTG
1 ACCTCCACACGCCATGCACCATCGTTATCGCGTAGAGTACCGATCTCCTCACGCAAGGCATTG
732147 ACCTCCACACGCCATGCACCATCGTTATCGCGTAGAGTACCGATCTCCTCACGCAAGGCATTG
1 ACCTCCACACGCCATGCACCATCGTTATCGCGTAGAGTACCGATCTCCTCACGCAAGGCATTG
732210 ACCTC
1 ACCTC
732215 ATCACGTAAC
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 68 1.00
ACGTcount: A:0.24, C:0.37, G:0.18, T:0.21
Consensus pattern (63 bp):
ACCTCCACACGCCATGCACCATCGTTATCGCGTAGAGTACCGATCTCCTCACGCAAGGCATTG
Found at i:733698 original size:20 final size:19
Alignment explanation
Indices: 733667--733773 Score: 107
Period size: 19 Copynumber: 5.8 Consensus size: 19
733657 TCTTTTGGTT
733667 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGA
* *
733686 GATAATGAGAATCGCAACGC
1 GA-AATGAAAATCGCAACGA
** *
733706 GAAATGACTATCGCAACGC
1 GAAATGAAAATCGCAACGA
*
733725 GAAATGAAAATCGCAATGA
1 GAAATGAAAATCGCAACGA
*
733744 G--A-G--AATCGCAACGC
1 GAAATGAAAATCGCAACGA
733758 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
733774 TGCGATTTTG
Statistics
Matches: 72, Mismatches: 10, Indels: 12
0.77 0.11 0.13
Matches are distributed among these distances:
14 10 0.14
16 2 0.03
17 2 0.03
19 41 0.57
20 17 0.24
ACGTcount: A:0.46, C:0.19, G:0.22, T:0.13
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGA
Found at i:733710 original size:39 final size:38
Alignment explanation
Indices: 733667--733778 Score: 108
Period size: 33 Copynumber: 3.1 Consensus size: 38
733657 TCTTTTGGTT
*
733667 GAAATGAAAATCGCAACGAGATAATGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGA-AATGAAAATCGCAACGC
** * *
733706 GAAATGACTATCGCAACGCGAAATGAAAATCGCAA--T
1 GAAATGAAAATCGCAACGAGAAATGAAAATCGCAACGC
* * *
733742 G--A-GAGAATCGCAACGCGAAATGAAAATCGCAATGC
1 GAAATGAAAATCGCAACGAGAAATGAAAATCGCAACGC
733777 GA
1 GA
733779 TTTTGGTTTC
Statistics
Matches: 62, Mismatches: 8, Indels: 9
0.78 0.10 0.11
Matches are distributed among these distances:
33 28 0.45
34 1 0.02
35 1 0.02
36 1 0.02
38 13 0.21
39 18 0.29
ACGTcount: A:0.45, C:0.19, G:0.23, T:0.13
Consensus pattern (38 bp):
GAAATGAAAATCGCAACGAGAAATGAAAATCGCAACGC
Found at i:733796 original size:19 final size:19
Alignment explanation
Indices: 733774--733818 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
733764 AAAATCGCAA
*
733774 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGATTTCGCGT
* *
733793 TGCGTTTTTTATTTCGCGT
1 TGCGATTTTGATTTCGCGT
733812 TGCGATT
1 TGCGATT
733819 CTCTCGTTGC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.07, C:0.16, G:0.27, T:0.51
Consensus pattern (19 bp):
TGCGATTTTGATTTCGCGT
Found at i:734445 original size:20 final size:20
Alignment explanation
Indices: 734360--734453 Score: 91
Period size: 20 Copynumber: 4.7 Consensus size: 20
734350 CGCTATGTAA
* *
734360 ATCGCGTTGCGAAAGTCAGA
1 ATCGCGTTGCGATAGTCAGT
*
734380 ATCGCGTTGCGAAAGTCAGT
1 ATCGCGTTGCGATAGTCAGT
* * *
734400 ATCTCGTTGCGATTTTGT-ATT
1 ATCGCGTTGCGA--TAGTCAGT
*
734421 ATCGCATTGCGATAGTCAGT
1 ATCGCGTTGCGATAGTCAGT
*
734441 ATCGCATTGCGAT
1 ATCGCGTTGCGAT
734454 TTTCCCAATT
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
19 3 0.05
20 45 0.73
21 12 0.19
22 2 0.03
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.32
Consensus pattern (20 bp):
ATCGCGTTGCGATAGTCAGT
Found at i:734472 original size:41 final size:41
Alignment explanation
Indices: 734380--734474 Score: 111
Period size: 41 Copynumber: 2.3 Consensus size: 41
734370 GAAAGTCAGA
* * * ** *
734380 ATCGCGTTGCGAAAGTCAGTATCTCGTTGCGATTTTGTATT
1 ATCGCGTTGCGATAGTCAGTATCGCATTGCGATTTTCCAAT
*
734421 ATCGCATTGCGATAGTCAGTATCGCATTGCGATTTTCCCAAT
1 ATCGCGTTGCGATAGTCAGTATCGCATTGCGATTTT-CCAAT
734463 -TCGCGTTGCGAT
1 ATCGCGTTGCGAT
734475 TTACTTATTC
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
41 43 0.96
42 2 0.04
ACGTcount: A:0.20, C:0.21, G:0.23, T:0.36
Consensus pattern (41 bp):
ATCGCGTTGCGATAGTCAGTATCGCATTGCGATTTTCCAAT
Found at i:735390 original size:29 final size:29
Alignment explanation
Indices: 735353--735417 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
735343 CTGGTTAACA
* * * *
735353 AACCTGTCATGTTATCGGTTCACTGGTTC
1 AACCGGTCATGCTATCGATTCACTAGTTC
* *
735382 AACCGGTCATGCTATCGATTTATTAGTTC
1 AACCGGTCATGCTATCGATTCACTAGTTC
735411 AACCGGT
1 AACCGGT
735418 TAAACCGGTT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (29 bp):
AACCGGTCATGCTATCGATTCACTAGTTC
Found at i:744349 original size:21 final size:21
Alignment explanation
Indices: 744310--744349 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
744300 CCCTCTATAT
*
744310 ATTATTTTTTTCAATTAAATC
1 ATTATTTTTTTCAAATAAATC
744331 ATTATTTTTATT-AAATAAA
1 ATTATTTTT-TTCAAATAAA
744350 AATAATATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 15 0.88
22 2 0.12
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (21 bp):
ATTATTTTTTTCAAATAAATC
Found at i:748111 original size:51 final size:51
Alignment explanation
Indices: 748056--748158 Score: 118
Period size: 51 Copynumber: 2.0 Consensus size: 51
748046 TGCGTTATAA
* * * **
748056 CTGATTTGACGCCACGTG-GAGTATAGCGCGTCCCCTGTACCGCGCTATACG
1 CTGATTGGACGACACGTGAGA-TATAGCGCGCCCCCTACACCGCGCTATACG
***
748107 CTGATTGGGTTACACGTGAGATATAGCGCGCCCCCTACACCGCGCTATACG
1 CTGATTGGACGACACGTGAGATATAGCGCGCCCCCTACACCGCGCTATACG
748158 C
1 C
748159 CATGTAGGGG
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
51 41 0.95
52 2 0.05
ACGTcount: A:0.19, C:0.32, G:0.26, T:0.22
Consensus pattern (51 bp):
CTGATTGGACGACACGTGAGATATAGCGCGCCCCCTACACCGCGCTATACG
Found at i:751629 original size:21 final size:21
Alignment explanation
Indices: 751603--751645 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
751593 TTTTCGGGCT
* *
751603 AGGGGAATCGGTACCCATTCA
1 AGGGGAACCGATACCCATTCA
*
751624 AGGGGAACCGATACCCCTTCA
1 AGGGGAACCGATACCCATTCA
751645 A
1 A
751646 CGAAATGAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.28, G:0.26, T:0.16
Consensus pattern (21 bp):
AGGGGAACCGATACCCATTCA
Found at i:751746 original size:68 final size:69
Alignment explanation
Indices: 751625--751778 Score: 215
Period size: 68 Copynumber: 2.2 Consensus size: 69
751615 ACCCATTCAA
* *
751625 GGGGAACCGATACCCCTTCAACGAAATGAATTTCCAGAATGTTAGAGGGGAATCGATA-CCCCCA
1 GGGGAACCGATACCCCCTCAACGAAATGAAATTCCAGAATGTTAGAGGGGAATCGATACCCCCCA
751689 -GGG
66 GGGG
* * *
751692 GGGGAACCGATACCCCCTCATCGTATATGAAATTCCAGATTGCTT-GAGGGGAATCGATACCCCC
1 GGGGAACCGATACCCCCTCAACG-AAATGAAATTCCAGAATG-TTAGAGGGGAATCGATACCCCC
751756 CAGGGG
64 CAGGGG
*
751762 GGGGAACCGATTCCCCC
1 GGGGAACCGATACCCCC
751779 ATGAGAAAAA
Statistics
Matches: 77, Mismatches: 6, Indels: 5
0.88 0.07 0.06
Matches are distributed among these distances:
67 21 0.27
68 29 0.38
69 8 0.10
70 19 0.25
ACGTcount: A:0.27, C:0.27, G:0.27, T:0.18
Consensus pattern (69 bp):
GGGGAACCGATACCCCCTCAACGAAATGAAATTCCAGAATGTTAGAGGGGAATCGATACCCCCCA
GGGG
Found at i:752179 original size:30 final size:30
Alignment explanation
Indices: 752145--752203 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
752135 GTTATATGAG
* *
752145 CTATGTGATAAAGGTATGTAAATGATATGT
1 CTATGTGATAAAGGTATGGAAATAATATGT
752175 CTATGTGATAAAGGTATGGAAATAATATG
1 CTATGTGATAAAGGTATGGAAATAATATG
752204 ACTACGCGAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.39, C:0.03, G:0.24, T:0.34
Consensus pattern (30 bp):
CTATGTGATAAAGGTATGGAAATAATATGT
Found at i:752477 original size:23 final size:22
Alignment explanation
Indices: 752417--752484 Score: 127
Period size: 22 Copynumber: 3.0 Consensus size: 22
752407 TTATGGACAT
752417 AATTCTACGGGCACTTCGGTGC
1 AATTCTACGGGCACTTCGGTGC
752439 AATTCTACGGGCACTTCGGTGC
1 AATTCTACGGGCACTTCGGTGC
752461 AATTCTACGGGGCACTTCGGTGC
1 AATTCTAC-GGGCACTTCGGTGC
752484 A
1 A
752485 TTTATACGAG
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
22 30 0.67
23 15 0.33
ACGTcount: A:0.19, C:0.26, G:0.28, T:0.26
Consensus pattern (22 bp):
AATTCTACGGGCACTTCGGTGC
Found at i:763114 original size:21 final size:21
Alignment explanation
Indices: 763088--763130 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
763078 TTTTCGGGCT
* *
763088 AGGGGAATCGGTACCCATTCA
1 AGGGGAACCGATACCCATTCA
*
763109 AGGGGAACCGATACCCCTTCA
1 AGGGGAACCGATACCCATTCA
763130 A
1 A
763131 CGAAATGAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.28, G:0.26, T:0.16
Consensus pattern (21 bp):
AGGGGAACCGATACCCATTCA
Found at i:763231 original size:68 final size:68
Alignment explanation
Indices: 763110--763262 Score: 220
Period size: 68 Copynumber: 2.2 Consensus size: 68
763100 ACCCATTCAA
* *
763110 GGGGAACCGATACCCCTTCAACGAAATGAATTTCCAGAATGTTAGAGGGGAATCGATA-CCCCCA
1 GGGGAACCGATACCCCCTCAACGAAATGAAATTCCAGAATGTTAGAGGGGAATCGATACCCCCCA
763174 GGG
66 GGG
* * *
763177 GGGGAACCGATACCCCCTCATCGTATATGAAATTCCAGATTGCTT-GAGGGGAATCGATACCCCC
1 GGGGAACCGATACCCCCTCAACG-AAATGAAATTCCAGAATG-TTAGAGGGGAATCGATACCCCC
763241 CAGGG
64 CAGGG
*
763246 GGGGAACCGATTCCCCC
1 GGGGAACCGATACCCCC
763263 ATGAGAAAAA
Statistics
Matches: 77, Mismatches: 6, Indels: 4
0.89 0.07 0.05
Matches are distributed among these distances:
67 21 0.27
68 29 0.38
69 27 0.35
ACGTcount: A:0.27, C:0.27, G:0.27, T:0.18
Consensus pattern (68 bp):
GGGGAACCGATACCCCCTCAACGAAATGAAATTCCAGAATGTTAGAGGGGAATCGATACCCCCCA
GGG
Found at i:763663 original size:30 final size:30
Alignment explanation
Indices: 763629--763687 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
763619 GTTATATGAG
* *
763629 CTATGTGATAAAGGTATGTAAATGATATGT
1 CTATGTGATAAAGGTATGGAAATAATATGT
763659 CTATGTGATAAAGGTATGGAAATAATATG
1 CTATGTGATAAAGGTATGGAAATAATATG
763688 ACTACGCGAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.39, C:0.03, G:0.24, T:0.34
Consensus pattern (30 bp):
CTATGTGATAAAGGTATGGAAATAATATGT
Found at i:763961 original size:23 final size:22
Alignment explanation
Indices: 763901--763968 Score: 127
Period size: 22 Copynumber: 3.0 Consensus size: 22
763891 TTATGGACAT
763901 AATTCTACGGGCACTTCGGTGC
1 AATTCTACGGGCACTTCGGTGC
763923 AATTCTACGGGCACTTCGGTGC
1 AATTCTACGGGCACTTCGGTGC
763945 AATTCTACGGGGCACTTCGGTGC
1 AATTCTAC-GGGCACTTCGGTGC
763968 A
1 A
763969 TTTATACGAG
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
22 30 0.67
23 15 0.33
ACGTcount: A:0.19, C:0.26, G:0.28, T:0.26
Consensus pattern (22 bp):
AATTCTACGGGCACTTCGGTGC
Found at i:765278 original size:25 final size:24
Alignment explanation
Indices: 765227--765283 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
765217 ATTAAATGAT
* *
765227 AAATAAAAAAATTACAATTTAACA
1 AAATAAAAAAAATACAATATAACA
*
765251 AAATAAAAAAAATACAAATATAATA
1 AAATAAAAAAAATAC-AATATAACA
765276 AAA-AAAAA
1 AAATAAAAA
765284 TCTATTGATG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 19 0.66
25 10 0.34
ACGTcount: A:0.75, C:0.05, G:0.00, T:0.19
Consensus pattern (24 bp):
AAATAAAAAAAATACAATATAACA
Found at i:765783 original size:18 final size:18
Alignment explanation
Indices: 765760--765794 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
765750 GAGATGACGG
* *
765760 CATCATATATGGTTGCGA
1 CATCATAAATGGCTGCGA
765778 CATCATAAATGGCTGCG
1 CATCATAAATGGCTGCG
765795 GTGGCTGCTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (18 bp):
CATCATAAATGGCTGCGA
Found at i:767441 original size:111 final size:111
Alignment explanation
Indices: 767303--767521 Score: 402
Period size: 111 Copynumber: 2.0 Consensus size: 111
767293 ATTACAAAAA
767303 TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAATTATTACTAATAATTTAAATTA
1 TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAATTATTACTAATAATTTAAATTA
* *
767368 AATTAAAACGTTAAAATGTTACCGTATCATCAAAGTGTCGAGACAT
66 AATTAAAACGTTAAAATGTTACCGTATCAGCAAAGTGTAGAGACAT
*
767414 TTAATTCTTAATCTAATAATCATGCATTAATTAAATCAACTAATTATTACTAATAATTTAAATTA
1 TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAATTATTACTAATAATTTAAATTA
*
767479 AATTAAAATGTTAAAATGTTACCGTATCAGCAAAGTGTAGAGA
66 AATTAAAACGTTAAAATGTTACCGTATCAGCAAAGTGTAGAGA
767522 TATATGATTT
Statistics
Matches: 104, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
111 104 1.00
ACGTcount: A:0.44, C:0.11, G:0.08, T:0.37
Consensus pattern (111 bp):
TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAATTATTACTAATAATTTAAATTA
AATTAAAACGTTAAAATGTTACCGTATCAGCAAAGTGTAGAGACAT
Found at i:767934 original size:51 final size:51
Alignment explanation
Indices: 767816--767947 Score: 149
Period size: 51 Copynumber: 2.6 Consensus size: 51
767806 AGATAACCAG
* * *
767816 GTATAGCGCGGATCAGGGGGCGCGTTATAC-CCACGTGGCGTCAAATCACC
1 GTATAGCGCGGATCAGGGGGCGCGCTATACTCCACGTGACGCCAAATCACC
* * ** * *
767866 GTATATCGAGGGCCAGGGGGCGCGCTATACTCCATGTGACGCCAAATCAGC
1 GTATAGCGCGGATCAGGGGGCGCGCTATACTCCACGTGACGCCAAATCACC
* * *
767917 GTATAGCGCGGTTCAGGGGGCACGCTTTACT
1 GTATAGCGCGGATCAGGGGGCGCGCTATACT
767948 GCTACATGTA
Statistics
Matches: 66, Mismatches: 15, Indels: 1
0.80 0.18 0.01
Matches are distributed among these distances:
50 25 0.38
51 41 0.62
ACGTcount: A:0.21, C:0.27, G:0.33, T:0.20
Consensus pattern (51 bp):
GTATAGCGCGGATCAGGGGGCGCGCTATACTCCACGTGACGCCAAATCACC
Found at i:771123 original size:76 final size:75
Alignment explanation
Indices: 771022--771174 Score: 261
Period size: 76 Copynumber: 2.0 Consensus size: 75
771012 TTTATGAAGG
*
771022 TTACTAATTTTTTTTATGTTGATCTTCATTCTCAAAAGAATATTTCATTTTTCTTTGTATCTTTG
1 TTACTAATTTTTTTTATGTTGATCTTCATTCTCAAAAGAATATTTCATTTCTCTTTGTATCTTTG
*
771087 GATTTAATAC
66 AATTTAATAC
* *
771097 TTACTGAATTTTTTTTATGTTGATCTTTATTCTCAAAGGAATATTTCATTTCTCTTTGTATCTTT
1 TTACT-AATTTTTTTTATGTTGATCTTCATTCTCAAAAGAATATTTCATTTCTCTTTGTATCTTT
771162 GAATTTAATAC
65 GAATTTAATAC
771173 TT
1 TT
771175 TTATTTTGTT
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
75 5 0.07
76 68 0.93
ACGTcount: A:0.25, C:0.12, G:0.08, T:0.55
Consensus pattern (75 bp):
TTACTAATTTTTTTTATGTTGATCTTCATTCTCAAAAGAATATTTCATTTCTCTTTGTATCTTTG
AATTTAATAC
Found at i:774989 original size:32 final size:32
Alignment explanation
Indices: 774849--774989 Score: 193
Period size: 32 Copynumber: 4.5 Consensus size: 32
774839 ACCATTAGAA
774849 TACACATAAAATTATATTATTTAATACACTTTT
1 TACAC-TAAAATTATATTATTTAATACACTTTT
*
774882 TACACTGAAATTATATTATTTAATACACTTTT
1 TACACTAAAATTATATTATTTAATACACTTTT
*
774914 TACACTAAAATTATATTATTGAATACACTTTT
1 TACACTAAAATTATATTATTTAATACACTTTT
* * *
774946 TACACTAATATTAT-TGA--TGATA-A-TTTT
1 TACACTAAAATTATATTATTTAATACACTTTT
774973 TACACTAAAATTATATT
1 TACACTAAAATTATATT
774990 CTCATTTCTC
Statistics
Matches: 98, Mismatches: 9, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
27 17 0.17
28 2 0.02
29 3 0.03
31 2 0.02
32 69 0.70
33 5 0.05
ACGTcount: A:0.40, C:0.11, G:0.03, T:0.45
Consensus pattern (32 bp):
TACACTAAAATTATATTATTTAATACACTTTT
Found at i:779191 original size:3 final size:3
Alignment explanation
Indices: 779183--779215 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
779173 ACCAATTACC
779183 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
779216 TGTGGGATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:785165 original size:277 final size:277
Alignment explanation
Indices: 784671--785225 Score: 1110
Period size: 277 Copynumber: 2.0 Consensus size: 277
784661 AGACTCGTTA
784671 TTTTATGTGAAATATAAAATTTTTAAAAAATATAAGGAATAAATGCCTTCATTCGCCCCAATCGA
1 TTTTATGTGAAATATAAAATTTTTAAAAAATATAAGGAATAAATGCCTTCATTCGCCCCAATCGA
784736 GAATATGTTTTCAGGCATTTCCACCTCTTTGTTTGATGACCTGTAACCCAAGGAAAGAAATCAGT
66 GAATATGTTTTCAGGCATTTCCACCTCTTTGTTTGATGACCTGTAACCCAAGGAAAGAAATCAGT
784801 AAATGATATATTACTTAACATTTCTAGTAAAATTAATGGGAATGAATAGAAAATCACAAAAGAGG
131 AAATGATATATTACTTAACATTTCTAGTAAAATTAATGGGAATGAATAGAAAATCACAAAAGAGG
784866 AAAGATAACCATTGTATGAGTTGGATTTTCTTGACTGAAGTTCCACACATTTTGGAGATTTTTTA
196 AAAGATAACCATTGTATGAGTTGGATTTTCTTGACTGAAGTTCCACACATTTTGGAGATTTTTTA
784931 GAACGGATTATAAAATC
261 GAACGGATTATAAAATC
784948 TTTTATGTGAAATATAAAATTTTTAAAAAATATAAGGAATAAATGCCTTCATTCGCCCCAATCGA
1 TTTTATGTGAAATATAAAATTTTTAAAAAATATAAGGAATAAATGCCTTCATTCGCCCCAATCGA
785013 GAATATGTTTTCAGGCATTTCCACCTCTTTGTTTGATGACCTGTAACCCAAGGAAAGAAATCAGT
66 GAATATGTTTTCAGGCATTTCCACCTCTTTGTTTGATGACCTGTAACCCAAGGAAAGAAATCAGT
785078 AAATGATATATTACTTAACATTTCTAGTAAAATTAATGGGAATGAATAGAAAATCACAAAAGAGG
131 AAATGATATATTACTTAACATTTCTAGTAAAATTAATGGGAATGAATAGAAAATCACAAAAGAGG
785143 AAAGATAACCATTGTATGAGTTGGATTTTCTTGACTGAAGTTCCACACATTTTGGAGATTTTTTA
196 AAAGATAACCATTGTATGAGTTGGATTTTCTTGACTGAAGTTCCACACATTTTGGAGATTTTTTA
785208 GAACGGATTATAAAATC
261 GAACGGATTATAAAATC
785225 T
1 T
785226 GGAAACACTA
Statistics
Matches: 278, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
277 278 1.00
ACGTcount: A:0.38, C:0.13, G:0.16, T:0.33
Consensus pattern (277 bp):
TTTTATGTGAAATATAAAATTTTTAAAAAATATAAGGAATAAATGCCTTCATTCGCCCCAATCGA
GAATATGTTTTCAGGCATTTCCACCTCTTTGTTTGATGACCTGTAACCCAAGGAAAGAAATCAGT
AAATGATATATTACTTAACATTTCTAGTAAAATTAATGGGAATGAATAGAAAATCACAAAAGAGG
AAAGATAACCATTGTATGAGTTGGATTTTCTTGACTGAAGTTCCACACATTTTGGAGATTTTTTA
GAACGGATTATAAAATC
Found at i:786884 original size:12 final size:13
Alignment explanation
Indices: 786853--786895 Score: 63
Period size: 12 Copynumber: 3.5 Consensus size: 13
786843 TCTTAAAAAA
786853 TAAAATATTATTT
1 TAAAATATTATTT
*
786866 T-ATATATT-TTT
1 TAAAATATTATTT
786877 TAAAATATTATTT
1 TAAAATATTATTT
786890 TAAAAT
1 TAAAAT
786896 CTAAAATTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
11 4 0.15
12 12 0.46
13 10 0.38
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TAAAATATTATTT
Found at i:791889 original size:34 final size:34
Alignment explanation
Indices: 791846--791924 Score: 106
Period size: 34 Copynumber: 2.3 Consensus size: 34
791836 CTGCCTGCCT
* *
791846 GCCTCTACCTCTA-CTCATTAGGGTTGGACTGTCG
1 GCCTCTACCTCTATC-CATCAGGGTTGGACCGTCG
*
791880 GCCTCTACCTCTATCCATCAGTGTTGGACCGTCG
1 GCCTCTACCTCTATCCATCAGGGTTGGACCGTCG
*
791914 GCTTCTACCTC
1 GCCTCTACCTC
791925 CGACTTCTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
34 39 0.98
35 1 0.03
ACGTcount: A:0.14, C:0.34, G:0.20, T:0.32
Consensus pattern (34 bp):
GCCTCTACCTCTATCCATCAGGGTTGGACCGTCG
Found at i:807438 original size:30 final size:30
Alignment explanation
Indices: 807374--807446 Score: 78
Period size: 31 Copynumber: 2.4 Consensus size: 30
807364 TTAAATAGTT
*
807374 ATTATTTTTTATATTAATATATTTATGTAAA
1 ATTATTTTTTATATAAATATATTTA-GTAAA
*
807405 ATTATTTTATTAT-TAAATAATATTTA-TATA
1 ATTATTTT-TTATATAAAT-ATATTTAGTAAA
*
807435 ATTATTATTTAT
1 ATTATTTTTTAT
807447 TTAGAATTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
29 4 0.11
30 10 0.27
31 12 0.32
32 11 0.30
ACGTcount: A:0.40, C:0.00, G:0.01, T:0.59
Consensus pattern (30 bp):
ATTATTTTTTATATAAATATATTTAGTAAA
Found at i:807446 original size:32 final size:32
Alignment explanation
Indices: 807363--807447 Score: 84
Period size: 32 Copynumber: 2.7 Consensus size: 32
807353 TTAGTATTTT
* * * *
807363 TTTAAATAGTTATTATTTTTTATATTAATATA
1 TTTATATAATTATTATTTATTATATAAATATA
* *
807395 TTTATGTAA-AATTATTTTATTAT-TAAATAATA
1 TTTATATAATTATTA-TTTATTATATAAAT-ATA
807427 TTTATATAATTATTATTTATT
1 TTTATATAATTATTATTTATT
807448 TAGAATTATT
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
31 8 0.19
32 30 0.71
33 4 0.10
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (32 bp):
TTTATATAATTATTATTTATTATATAAATATA
Found at i:809196 original size:21 final size:21
Alignment explanation
Indices: 809166--809213 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
809156 GCAGGGGTAC
* *
809166 ATGCCCAGCCCTCCACTTCAT
1 ATGCCAAGCCCACCACTTCAT
* *
809187 ATGCCAAGCCCACCAGTTTAT
1 ATGCCAAGCCCACCACTTCAT
809208 ATGCCA
1 ATGCCA
809214 TCTCCGCAGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.25, C:0.40, G:0.12, T:0.23
Consensus pattern (21 bp):
ATGCCAAGCCCACCACTTCAT
Found at i:809243 original size:21 final size:21
Alignment explanation
Indices: 809217--809310 Score: 129
Period size: 21 Copynumber: 4.5 Consensus size: 21
809207 TATGCCATCT
* *
809217 CCGCAGGGTTACATTCCGAGC
1 CCGCAGGGTTACATGCCTAGC
*
809238 CCGCAGGGTTACATTCCTAGC
1 CCGCAGGGTTACATGCCTAGC
809259 CCGCCA-GGTTACATGCCTAGC
1 CCG-CAGGGTTACATGCCTAGC
809280 CCGCCA-GGTTACATGCCTAGC
1 CCG-CAGGGTTACATGCCTAGC
809301 CCGCAGGGTT
1 CCGCAGGGTT
809311 TTATACCATA
Statistics
Matches: 69, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
20 2 0.03
21 65 0.94
22 2 0.03
ACGTcount: A:0.18, C:0.35, G:0.27, T:0.20
Consensus pattern (21 bp):
CCGCAGGGTTACATGCCTAGC
Found at i:809891 original size:33 final size:34
Alignment explanation
Indices: 809832--809928 Score: 133
Period size: 33 Copynumber: 2.9 Consensus size: 34
809822 AAATGTTTTT
*
809832 AAAATACAAATTATATTATTCGAAATTTAAAATA
1 AAAATAAAAATTATATTATTCGAAATTTAAAATA
* * *
809866 AAAATAAAAATAATATTATTC-AAATTTAAATTT
1 AAAATAAAAATTATATTATTCGAAATTTAAAATA
* *
809899 AAAATATAAATTATAGTATTCGAAATTTAA
1 AAAATAAAAATTATATTATTCGAAATTTAA
809929 CATTAAATTT
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
33 28 0.51
34 27 0.49
ACGTcount: A:0.56, C:0.04, G:0.03, T:0.37
Consensus pattern (34 bp):
AAAATAAAAATTATATTATTCGAAATTTAAAATA
Found at i:809935 original size:34 final size:33
Alignment explanation
Indices: 809830--809935 Score: 133
Period size: 34 Copynumber: 3.2 Consensus size: 33
809820 ATAAATGTTT
*
809830 TTAAAATACAAATTATATTATTCGAAATTTAAAA
1 TTAAAATAAAAATTATATTATTCGAAATTT-AAA
* *
809864 TAAAAATAAAAATAATATTATTC-AAATTTAAA
1 TTAAAATAAAAATTATATTATTCGAAATTTAAA
* *
809896 TTTAAAATATAAATTATAGTATTCGAAATTTAACA
1 -TTAAAATAAAAATTATATTATTCGAAATTTAA-A
809931 TTAAA
1 TTAAA
809936 TTTAAACTTA
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
32 3 0.05
33 25 0.40
34 33 0.53
35 1 0.02
ACGTcount: A:0.55, C:0.05, G:0.03, T:0.38
Consensus pattern (33 bp):
TTAAAATAAAAATTATATTATTCGAAATTTAAA
Found at i:810542 original size:126 final size:126
Alignment explanation
Indices: 810317--810603 Score: 547
Period size: 126 Copynumber: 2.3 Consensus size: 126
810307 TTAAGTTATT
*
810317 CCCCGAGGGACATGAGTGACATAATAGGGCAATGATAATATTCTCTGACGAAATAATGGAAGGCG
1 CCCCGAGGGACATGAATGACATAATAGGGCAATGATAATATTCTCTGACGAAATAATGGAAGGCG
*
810382 CGTCCCCGGGAACGCGCCTTCACGTGAATAGTGAAATAATAGGTACTGATATATCTAGTGA
66 CGCCCCCGGGAACGCGCCTTCACGTGAATAGTGAAATAATAGGTACTGATATATCTAGTGA
810443 CCCCGAGGGACATGAATGACATAATAGGGCAATGATAATATTCTCTGACGAAATAATGGAAGGCG
1 CCCCGAGGGACATGAATGACATAATAGGGCAATGATAATATTCTCTGACGAAATAATGGAAGGCG
*
810508 CGCCCCCGGGAACGCGCCTTCACGTGAATAGTGAAATAATAGGTATTGATATATCTAGTGA
66 CGCCCCCGGGAACGCGCCTTCACGTGAATAGTGAAATAATAGGTACTGATATATCTAGTGA
810569 CCCCGAGGGACATGAATGACATAATAGGGCAATGA
1 CCCCGAGGGACATGAATGACATAATAGGGCAATGA
810604 CATGAATGAC
Statistics
Matches: 158, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
126 158 1.00
ACGTcount: A:0.33, C:0.19, G:0.26, T:0.21
Consensus pattern (126 bp):
CCCCGAGGGACATGAATGACATAATAGGGCAATGATAATATTCTCTGACGAAATAATGGAAGGCG
CGCCCCCGGGAACGCGCCTTCACGTGAATAGTGAAATAATAGGTACTGATATATCTAGTGA
Found at i:810613 original size:9 final size:9
Alignment explanation
Indices: 810599--810624 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
810589 ATAATAGGGC
810599 AATGACATG
1 AATGACATG
810608 AATGACATG
1 AATGACATG
810617 AATGACAT
1 AATGACAT
810625 TCGCATTTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.46, C:0.12, G:0.19, T:0.23
Consensus pattern (9 bp):
AATGACATG
Found at i:811081 original size:25 final size:28
Alignment explanation
Indices: 811053--811107 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 28
811043 ATACATAAAT
811053 ATATTTA-A-TATATTTATTTA-A-TATA
1 ATATTTATATTATATTT-TTTACATTATA
811078 ATATTTATATTATATTTTTTACATTATA
1 ATATTTATATTATATTTTTTACATTATA
811106 AT
1 AT
811108 CGAAACATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
25 7 0.27
26 5 0.19
27 8 0.31
28 6 0.23
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (28 bp):
ATATTTATATTATATTTTTTACATTATA
Found at i:811119 original size:21 final size:22
Alignment explanation
Indices: 811094--811150 Score: 98
Period size: 23 Copynumber: 2.6 Consensus size: 22
811084 ATATTATATT
811094 TTTTACAT-TATAATCGAAACA
1 TTTTACATATATAATCGAAACA
811115 TTTTACATAATATAATCGAAACA
1 TTTTACAT-ATATAATCGAAACA
811138 TTTTACATATATA
1 TTTTACATATATA
811151 TTATTAATTT
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
21 8 0.24
22 5 0.15
23 21 0.62
ACGTcount: A:0.44, C:0.12, G:0.04, T:0.40
Consensus pattern (22 bp):
TTTTACATATATAATCGAAACA
Found at i:812336 original size:9 final size:9
Alignment explanation
Indices: 812322--812347 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
812312 CTTATGTCCC
812322 TGCCTTCCT
1 TGCCTTCCT
812331 TGCCTTCCT
1 TGCCTTCCT
812340 TGCCTTCC
1 TGCCTTCC
812348 GTGAGGTAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.00, C:0.46, G:0.12, T:0.42
Consensus pattern (9 bp):
TGCCTTCCT
Found at i:815353 original size:23 final size:24
Alignment explanation
Indices: 815306--815354 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
815296 TGTTTGTGAT
*
815306 CATGTTCATTTATATATTCACAAA
1 CATGTTCATTTAGATATTCACAAA
*
815330 CATGTTCATTTAGA-ATTCATAAA
1 CATGTTCATTTAGATATTCACAAA
815353 CA
1 CA
815355 AATTCGTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 10 0.43
24 13 0.57
ACGTcount: A:0.39, C:0.16, G:0.06, T:0.39
Consensus pattern (24 bp):
CATGTTCATTTAGATATTCACAAA
Found at i:820719 original size:23 final size:24
Alignment explanation
Indices: 820671--820716 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
820661 TATCAATAAG
* *
820671 AAATTTAA-AATAGTAAACTTATT
1 AAATTTAAGAAAAATAAACTTATT
*
820694 AAATTTAAGAAAAATAAATTTAT
1 AAATTTAAGAAAAATAAACTTAT
820717 AAAGTTTTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 8 0.42
24 11 0.58
ACGTcount: A:0.57, C:0.02, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATTTAAGAAAAATAAACTTATT
Found at i:828171 original size:20 final size:19
Alignment explanation
Indices: 828138--828231 Score: 80
Period size: 20 Copynumber: 4.6 Consensus size: 19
828128 CATTCTGAAC
*
828138 CATTCTTCTTCCATAAATT
1 CATTCTTCTTCCATAAACT
*
828157 CATTGCTTCTACCATAAACT
1 CATT-CTTCTTCCATAAACT
*
828177 CGTTTCTTCTTCCATAAACT
1 C-ATTCTTCTTCCATAAACT
* *
828197 CGTTTCTTTTTCTTCCATAAACC
1 C-ATTC---TTCTTCCATAAACT
828220 CATTTCTTCTTC
1 CA-TTCTTCTTC
828232 TTCCATAACC
Statistics
Matches: 63, Mismatches: 6, Indels: 11
0.79 0.08 0.14
Matches are distributed among these distances:
19 4 0.06
20 40 0.63
21 2 0.03
23 17 0.27
ACGTcount: A:0.21, C:0.30, G:0.03, T:0.46
Consensus pattern (19 bp):
CATTCTTCTTCCATAAACT
Found at i:828188 original size:23 final size:23
Alignment explanation
Indices: 828162--828255 Score: 99
Period size: 23 Copynumber: 4.3 Consensus size: 23
828152 AAATTCATTG
*
828162 CTTCTACCATAAACTCG--T-TT
1 CTTCTTCCATAAACTCGTTTCTT
828182 CTTCTTCCATAAACTCGTTTCTT
1 CTTCTTCCATAAACTCGTTTCTT
* * *
828205 TTTCTTCCATAAACCCATTTCTT
1 CTTCTTCCATAAACTCGTTTCTT
* *
828228 CTTCTTCCAT-AAC-CATTTCTC
1 CTTCTTCCATAAACTCGTTTCTT
828249 CTTCTTC
1 CTTCTTC
828256 AATTCGTCTA
Statistics
Matches: 65, Mismatches: 6, Indels: 5
0.86 0.08 0.07
Matches are distributed among these distances:
20 16 0.25
21 14 0.22
22 4 0.06
23 31 0.48
ACGTcount: A:0.19, C:0.33, G:0.02, T:0.46
Consensus pattern (23 bp):
CTTCTTCCATAAACTCGTTTCTT
Found at i:828301 original size:48 final size:48
Alignment explanation
Indices: 828242--828338 Score: 167
Period size: 48 Copynumber: 2.0 Consensus size: 48
828232 TTCCATAACC
828242 ATTTCTCCTTCTTCAATTCGTCTAAGAGAAAAAGTAGTGAGAAAAACG
1 ATTTCTCCTTCTTCAATTCGTCTAAGAGAAAAAGTAGTGAGAAAAACG
* * *
828290 ATTTCTTCTTCTTCCATTTGTCTAAGAGAAAAAGTAGTGAGAAAAACG
1 ATTTCTCCTTCTTCAATTCGTCTAAGAGAAAAAGTAGTGAGAAAAACG
828338 A
1 A
828339 GCAAAGAGAA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.31
Consensus pattern (48 bp):
ATTTCTCCTTCTTCAATTCGTCTAAGAGAAAAAGTAGTGAGAAAAACG
Found at i:829757 original size:13 final size:13
Alignment explanation
Indices: 829739--829773 Score: 61
Period size: 14 Copynumber: 2.6 Consensus size: 13
829729 AATTAGTATA
829739 TTTAAATACTTAT
1 TTTAAATACTTAT
829752 TTTAAAATACTTAT
1 TTT-AAATACTTAT
829766 TTTAAATA
1 TTTAAATA
829774 GTGGTTATCC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 8 0.38
14 13 0.62
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.51
Consensus pattern (13 bp):
TTTAAATACTTAT
Found at i:830583 original size:42 final size:42
Alignment explanation
Indices: 830524--830618 Score: 172
Period size: 42 Copynumber: 2.3 Consensus size: 42
830514 TTCCCCGAAA
*
830524 TCCCGTGTTTGTTTCACGTAATTCGTTTTCTGGAAAATGTTT
1 TCCCGTGTTTGTTTCACGTAATTCGTTTTCCGGAAAATGTTT
830566 TCCCGTGTTTGTTTCACGTAATTCGTTTTCCGGAAAATGTTT
1 TCCCGTGTTTGTTTCACGTAATTCGTTTTCCGGAAAATGTTT
*
830608 TCCAGTGTTTG
1 TCCCGTGTTTG
830619 GTTGAAGGAA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 51 1.00
ACGTcount: A:0.16, C:0.18, G:0.20, T:0.46
Consensus pattern (42 bp):
TCCCGTGTTTGTTTCACGTAATTCGTTTTCCGGAAAATGTTT
Found at i:830804 original size:14 final size:14
Alignment explanation
Indices: 830785--830833 Score: 62
Period size: 14 Copynumber: 3.4 Consensus size: 14
830775 GAATTTACTA
830785 TTAATAAAATATTT
1 TTAATAAAATATTT
*
830799 TTAATATAATATTT
1 TTAATAAAATATTT
* *
830813 ATAATAATATATTT
1 TTAATAAAATATTT
830827 ATTAATA
1 -TTAATA
830834 TTATAATAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
14 24 0.83
15 5 0.17
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (14 bp):
TTAATAAAATATTT
Found at i:830846 original size:28 final size:29
Alignment explanation
Indices: 830787--830858 Score: 76
Period size: 28 Copynumber: 2.5 Consensus size: 29
830777 ATTTACTATT
* * *
830787 AATAAAATATTT-TTAATATAATATTTAT
1 AATAATATATTTATTAATATAATATATAA
*
830815 AATAATATATTTATTAATATTATA-ATAA
1 AATAATATATTTATTAATATAATATATAA
*
830843 AATAATAAATTATATT
1 AATAATATATT-TATT
830859 TTAAATATTT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.62
29 14 0.38
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (29 bp):
AATAATATATTTATTAATATAATATATAA
Found at i:830849 original size:59 final size:59
Alignment explanation
Indices: 830786--830905 Score: 140
Period size: 59 Copynumber: 2.0 Consensus size: 59
830776 AATTTACTAT
* *
830786 TAATAAAATAT-TTTTAATATAATATTT-ATAA-TAATATATTT-ATTAATATTATAATAAAA
1 TAATAAAATATATTTTAA-AT-AT-TTTCATAATTAATAT-TTTGATTAAAAATATAATAAAA
* *
830845 TAATAAATTATATTTTAAATATTTTCATAATTAATATTTTGATTAAAAATATATTAAAA
1 TAATAAAATATATTTTAAATATTTTCATAATTAATATTTTGATTAAAAATATAATAAAA
830904 TA
1 TA
830906 TTTTATTAAT
Statistics
Matches: 53, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
57 3 0.06
58 9 0.17
59 35 0.66
60 6 0.11
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (59 bp):
TAATAAAATATATTTTAAATATTTTCATAATTAATATTTTGATTAAAAATATAATAAAA
Found at i:831137 original size:42 final size:42
Alignment explanation
Indices: 831081--831175 Score: 163
Period size: 42 Copynumber: 2.3 Consensus size: 42
831071 TTCCTTCAAC
* * *
831081 CAAACACTGGAAAACATTTTCCGGAAAACGAATTATGTGAAA
1 CAAACACGGGAAAACATTTTCCGGAAAACGAATTACGAGAAA
831123 CAAACACGGGAAAACATTTTCCGGAAAACGAATTACGAGAAA
1 CAAACACGGGAAAACATTTTCCGGAAAACGAATTACGAGAAA
831165 CAAACACGGGA
1 CAAACACGGGA
831176 TTTCGGGGGA
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 50 1.00
ACGTcount: A:0.46, C:0.19, G:0.19, T:0.16
Consensus pattern (42 bp):
CAAACACGGGAAAACATTTTCCGGAAAACGAATTACGAGAAA
Found at i:837682 original size:27 final size:27
Alignment explanation
Indices: 837652--837707 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
837642 TTGGAAGATA
837652 ACTAAATATAAGGGGAAATAGCTTATT
1 ACTAAATATAAGGGGAAATAGCTTATT
837679 ACTAAATATAAGGGGAAATAGCTTATT
1 ACTAAATATAAGGGGAAATAGCTTATT
837706 AC
1 AC
837708 AAGAAATCAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.45, C:0.09, G:0.18, T:0.29
Consensus pattern (27 bp):
ACTAAATATAAGGGGAAATAGCTTATT
Found at i:839364 original size:29 final size:28
Alignment explanation
Indices: 839307--839367 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 28
839297 CAGTATTTAA
839307 ATTTAATAATTCATTAATAATTTAAAATG
1 ATTTAATAATTCATTAATAATTT-AAATG
*
839336 ATTTATTAATTCATTAATAGAATTT-AATG
1 ATTTAATAATTCATTAAT--AATTTAAATG
839365 ATT
1 ATT
839368 CGTTATCACG
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
29 24 0.83
31 5 0.17
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (28 bp):
ATTTAATAATTCATTAATAATTTAAATG
Found at i:843671 original size:29 final size:30
Alignment explanation
Indices: 843638--843694 Score: 89
Period size: 29 Copynumber: 1.9 Consensus size: 30
843628 ATGTATGTTT
*
843638 TTTTAGTTTAATGTCTAACG-TTTATTTCG
1 TTTTAGTTTAATGCCTAACGTTTTATTTCG
*
843667 TTTTAGTTTGATGCCTAACGTTTTATTT
1 TTTTAGTTTAATGCCTAACGTTTTATTT
843695 TGTTATTCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 18 0.72
30 7 0.28
ACGTcount: A:0.19, C:0.11, G:0.14, T:0.56
Consensus pattern (30 bp):
TTTTAGTTTAATGCCTAACGTTTTATTTCG
Found at i:845525 original size:21 final size:20
Alignment explanation
Indices: 845495--845537 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
845485 CTCTTTTCAT
845495 AATTTATAT-TTT-TTAAATA
1 AATTTATATATTTATT-AATA
845514 AATTTATATATTTATTAATA
1 AATTTATATATTTATTAATA
845534 AATT
1 AATT
845538 ATAAAAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 9 0.41
20 11 0.50
21 2 0.09
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (20 bp):
AATTTATATATTTATTAATA
Found at i:845539 original size:19 final size:20
Alignment explanation
Indices: 845495--845540 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 20
845485 CTCTTTTCAT
*
845495 AATT-TATATTTTTTAAATA
1 AATTATATATTTATTAAATA
845514 AATTTATATATTTATT-AATA
1 AA-TTATATATTTATTAAATA
845534 AATTATA
1 AATTATA
845541 AAAAATTATA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
19 7 0.29
20 8 0.33
21 9 0.38
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (20 bp):
AATTATATATTTATTAAATA
Found at i:848736 original size:141 final size:139
Alignment explanation
Indices: 848482--848761 Score: 542
Period size: 141 Copynumber: 2.0 Consensus size: 139
848472 GATCATCCAG
848482 CTAGCTATGATTTGTTCCTGTGCGAAATGACGACAAACGTACCTTTAAAAACCTTTTATATAAAT
1 CTAGCTATGATTTGTTCCTGTGCGAAATGACGACAAACGTACCTTTAAAAACCTTTTATATAAAT
848547 ATATGTATAGAAGAATATGAATGGAATGGAATGGAGAGACAAAAGTAGCTCTCTGAATGCAATAT
66 ATATGTATAGAAGAATATGAATGGAATGGAATGGAGAGACAAAAGTAG--CTCTGAATGCAATAT
848612 TCGACTTTGGT
129 TCGACTTTGGT
848623 CTAGCTATGATTTGTTCCTGTGCGAAATGACGACAAACGTACCTTTAAAAACCTTTTATATAAAT
1 CTAGCTATGATTTGTTCCTGTGCGAAATGACGACAAACGTACCTTTAAAAACCTTTTATATAAAT
848688 ATATGTATAGAAGAATATGAATGGAATGGAATGGAGAGACAAAAGTAGCTCTGAATGCAATATTC
66 ATATGTATAGAAGAATATGAATGGAATGGAATGGAGAGACAAAAGTAGCTCTGAATGCAATATTC
848753 GACTTTGGT
131 GACTTTGGT
848762 TATTGAGGGT
Statistics
Matches: 139, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
139 26 0.19
141 113 0.81
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.30
Consensus pattern (139 bp):
CTAGCTATGATTTGTTCCTGTGCGAAATGACGACAAACGTACCTTTAAAAACCTTTTATATAAAT
ATATGTATAGAAGAATATGAATGGAATGGAATGGAGAGACAAAAGTAGCTCTGAATGCAATATTC
GACTTTGGT
Found at i:853494 original size:745 final size:745
Alignment explanation
Indices: 850374--854080 Score: 6903
Period size: 745 Copynumber: 5.0 Consensus size: 745
850364 GGGAAAGAGG
* * *
850374 GTCATCTTTGGTTGGGCAAGAGCACCACCCTCTAACTACAATTAGCACAAGGAAAACACCAATCA
1 GTCATCTTTGGCTGGGCCAGAGCACCACCTTCTAACTACAATTAGCACAAGGAAAACACCAATCA
*
850439 AAAGCAACACTCATCTCAGGAGAAGAATCACATGCCTAAGCAATTATTAGTTACCAACTTCAACA
66 AAAGCAATACTCATCTCAGGAGAAGAATCACATGCCTAAGCAATTATTAGTTACCAACTTCAACA
850504 GTTTTAGGCATAAAGTACCTGTCCTTTGGAATTCTGCACATGGCAATATATGCACTCAATAAAGT
131 GTTTTAGGCATAAAGTACCTGTCCTTTGGAATTCTGCACATGGCAATATATGCACTCAATAAAGT
850569 GGCAAGTAACTTCATCAAAGCTTGTCACGGGCCTGAGAATTACAAGAAACCCAAAGAAACAATGA
196 GGCAAGTAACTTCATCAAAGCTTGTCACGGGCCTGAGAATTACAAGAAACCCAAAGAAACAATGA
850634 CACTAATGCTTACAGAGATGCACAGTAGTGTATTGAATAGAAGTCATATAGTTGTCAATATTACA
261 CACTAATGCTTACAGAGATGCACAGTAGTGTATTGAATAGAAGTCATATAGTTGTCAATATTACA
850699 TATCCTGGGAATAT-ACAATTAAAGATTTAACAATAATGGCATAAGTGAAGACATGGTGTTAAAT
326 TATCCTGGGAATATAACAATTAAAGATTTAACAATAATGGCATAAGTGAAGACATGGTGTTAAAT
850763 AAAATAATAGATAAAAGAGGCACTTCACAATTAAAGAAGCTAAATGATTTCTAATGGTACCATAA
391 AAAATAATAGATAAAAGAGGCACTTCACAATTAAAGAAGCTAAATGATTTCTAATGGTACCATAA
850828 GTACAAACTAAATGCAACTAGGGTGAACAATGATAGATTCTCAGACAGTAGGTTCTTTTGGCATC
456 GTACAAACTAAATGCAACTAGGGTGAACAATGATAGATTCTCAGACAGTAGGTTCTTTTGGCATC
850893 AATTTCTCATTGCAATGCCAAACCAGAGCAGGCAAATAATTAAACACCAACAACAAAGCAATGAA
521 AATTTCTCATTGCAATGCCAAACCAGAGCAGGCAAATAATTAAACACCAACAACAAAGCAATGAA
850958 ATGTTCTAAGTAGCATAAAACAACTTCCATCCTTTTTTTGACTTTCCTGCTTGCTTCATTGAGAA
586 ATGTTCTAAGTAGCATAAAACAACTTCCATCCTTTTTTTGACTTTCCTGCTTGCTTCATTGAGAA
851023 TTTAGAGAAAGCTAACTTAACAAACACATATAAATGAGTTCATATAAACAATGCCACTTGATATG
651 TTTAGAGAAAGCTAACTTAACAAACACATATAAATGAGTTCATATAAACAATGCCACTTGATATG
851088 GCTCGCACAGGAATGCTCAATGATGAATCT
716 GCTCGCACAGGAATGCTCAATGATGAATCT
851118 GTCATCTTTGGCTGGGCCAGAGCACCACCTTCTAACTACAATTAGCACAAGGAAAACACCAATCA
1 GTCATCTTTGGCTGGGCCAGAGCACCACCTTCTAACTACAATTAGCACAAGGAAAACACCAATCA
851183 AAAGCAATACTCATCTCAGGAGAAGAATCACATGCCTAAGCAATTATTAGTTACCAACTTCAACA
66 AAAGCAATACTCATCTCAGGAGAAGAATCACATGCCTAAGCAATTATTAGTTACCAACTTCAACA
851248 GTTTTAGGCATAAAGTACCTGTCCTTTGGAATTCTGCACATGGCAATATATGCACTCAATAAAGT
131 GTTTTAGGCATAAAGTACCTGTCCTTTGGAATTCTGCACATGGCAATATATGCACTCAATAAAGT
*
851313 GGCAAGTAACTTCATCAAAGCTTGTCACGGGCCTGAGAA-TACAAGAAA-CCAAAGAAACAACGA
196 GGCAAGTAACTTCATCAAAGCTTGTCACGGGCCTGAGAATTACAAGAAACCCAAAGAAACAATGA
851376 CACTAATGCTTACAGAGATGCACAGTAGTGTATTGAATAGAAGTCATATAGTTGTCAATATTACA
261 CACTAATGCTTACAGAGATGCACAGTAGTGTATTGAATAGAAGTCATATAGTTGTCAATATTACA
851441 TATCCTGGGAATATAACAATTAAAGATTTAACAATAATGGCATAAGTGAAGACATGGTGTTAAAT
326 TATCCTGGGAATATAACAATTAAAGATTTAACAATAATGGCATAAGTGAAGACATGGTGTTAAAT
851506 AAAATAATAGATAAAAGAGGCACTTCACAATTAAAGAAGCTAAATGATTTCTAATGGTACCATAA
391 AAAATAATAGATAAAAGAGGCACTTCACAATTAAAGAAGCTAAATGATTTCTAATGGTACCATAA
851571 GTACAAACTAAATGCAACTAGGGTGAACAATGATAGATTCTCAGACAGTAGGTTCTTTTGGCATC
456 GTACAAACTAAATGCAACTAGGGTGAACAATGATAGATTCTCAGACAGTAGGTTCTTTTGGCATC
851636 AATTTCTCATTGCAATGCCAAACCAGAGCAGGCAAATAATTAAACACCAACAACAAAGCAATGAA
521 AATTTCTCATTGCAATGCCAAACCAGAGCAGGCAAATAATTAAACACCAACAACAAAGCAATGAA
851701 ATGTTCTAAGTAGCATAAAACAACTTCCATCCTTTTTTTGACTTTCCTGCTTGCTTCATTGAGAA
586 ATGTTCTAAGTAGCATAAAACAACTTCCATCCTTTTTTTGACTTTCCTGCTTGCTTCATTGAGAA
* *
851766 TTTAGAGAAAGCTAACTTAACAAGCACATATAAATGAGTTCATATAAACAATACCACTTGATATG
651 TTTAGAGAAAGCTAACTTAACAAACACATATAAATGAGTTCATATAAACAATGCCACTTGATATG
851831 GCTCGCACAGGAATGCTCAATGATGAATCT
716 GCTCGCACAGGAATGCTCAATGATGAATCT
851861 GTCATCTTTGGCTGGGCCAGAGCACCACCTTCTAACTACAATTAGCACAAGGAAAACACCAATCA
1 GTCATCTTTGGCTGGGCCAGAGCACCACCTTCTAACTACAATTAGCACAAGGAAAACACCAATCA
851926 AAAGCAATACTCATCTCAGGAGAAGAATCACATGCCTAAGCAATTATTAGTTACCAACTTCAACA
66 AAAGCAATACTCATCTCAGGAGAAGAATCACATGCCTAAGCAATTATTAGTTACCAACTTCAACA
851991 GTTTTAGGCATAAAGTACCTGTCCTTTGGAATTCTGCACATGGCAATATATGCACTCAATAAAGT
131 GTTTTAGGCATAAAGTACCTGTCCTTTGGAATTCTGCACATGGCAATATATGCACTCAATAAAGT
852056 GGCAAGTAACTTCATCAAAGCTTGTCACGGGCCTGAGAATTACAAGAAACCCAAAGAAACAATGA
196 GGCAAGTAACTTCATCAAAGCTTGTCACGGGCCTGAGAATTACAAGAAACCCAAAGAAACAATGA
852121 CACTAATGCTTACAGAGATGCACAGTAGTGTATTGAATAGAAGTCATATAGTTGTCAATATTACA
261 CACTAATGCTTACAGAGATGCACAGTAGTGTATTGAATAGAAGTCATATAGTTGTCAATATTACA
852186 TATCCTGGGAATATAACAA-TAATAGATTTAACAATAATGGCATAAGTGAAGACATGGTGTTAAA
326 TATCCTGGGAATATAACAATTAA-AGATTTAACAATAATGGCATAAGTGAAGACATGGTGTTAAA
*
852250 TAAAATAATAGATAAAAGAGGCACTTCAC-ATCGAAAGAAGCTAATAAATGATTTCTAATGGTAC
390 TAAAATAATAGATAAAAGAGGCACTTCACAAT-TAAAGAAGC---TAAATGATTTCTAATGGTAC
852314 CATAAGTACAAACTAAATGCAACTAGGGTGAACAATGATAGATTCTCAGACAGTAGGTTCTTTTG
451 CATAAGTACAAACTAAATGCAACTAGGGTGAACAATGATAGATTCTCAGACAGTAGGTTCTTTTG
* *
852379 TCATCAATTTCTCATTGCAATGCCAAACCAGAGCAAGCAAATAATTAAACACCAACAACAAAGCA
516 GCATCAATTTCTCATTGCAATGCCAAACCAGAGCAGGCAAATAATTAAACACCAACAACAAAGCA
852444 ATGAAATGTTCTAAGTAGCATAAAACAACTTCCATCCTTTTTTTGACTTTCCTGCTTGCTTCATT
581 ATGAAATGTTCTAAGTAGCATAAAACAACTTCCATCCTTTTTTTGACTTTCCTGCTTGCTTCATT
852509 GAGAATTTAGAGAAAGCTAACTTAACAAACACATATAAATGAGTTCATATAAACAATGCCACTTG
646 GAGAATTTAGAGAAAGCTAACTTAACAAACACATATAAATGAGTTCATATAAACAATGCCACTTG
852574 ATATGGCTCGCACAGGAATGCTCAATGATGAATCT
711 ATATGGCTCGCACAGGAATGCTCAATGATGAATCT
852609 GTCATCTTTGGCTGGGCCAGAGCACCACCTTCTAACTACAATTAGCACAAGGAAAACACCACCAA
1 GTCATCTTTGGCTGGGCCAGAGCACCACCTTCTAACTACAATTAGCACAAGG-AAA-A-CACCAA
852674 TC-AAAGCAATACTCATCTCAGGAGAAGAATCACATGCCTAAGCAATTATTAGTTACCAACTTCA
63 TCAAAAGCAATACTCATCTCAGGAGAAGAATCACATGCCTAAGCAATTATTAGTTACCAACTTCA
*
852738 ACAGTTTTAGGCGTAAAGTACCTGTCCTTTGGAATTCTGCACATGGCAATATATGCACTCAATAA
128 ACAGTTTTAGGCATAAAGTACCTGTCCTTTGGAATTCTGCACATGGCAATATATGCACTCAATAA
852803 AGTGGCAAGTAACTTCATCAAAGCTTGTCACGGGCCTGAGAATTACAAGAAACCCAAAGAAACAA
193 AGTGGCAAGTAACTTCATCAAAGCTTGTCACGGGCCTGAGAATTACAAGAAACCCAAAGAAACAA
*
852868 CGACACTAATGCTTACAGAGATGCACAGTAGTGTATTGAATAGAAGTCATATAGTTGTCAATATT
258 TGACACTAATGCTTACAGAGATGCACAGTAGTGTATTGAATAGAAGTCATATAGTTGTCAATATT
852933 ACATATCCTGGGAATATAACAATTAAAGATTTAACAATAATGGCATAAGTGAAGACATGGTGTTA
323 ACATATCCTGGGAATATAACAATTAAAGATTTAACAATAATGGCATAAGTGAAGACATGGTGTTA
852998 AATAAAATAATAGATAAAAGAGGCACTTCACAATTAAAGAAGCTAAATGA-TTCTAATGGTACCA
388 AATAAAATAATAGATAAAAGAGGCACTTCACAATTAAAGAAGCTAAATGATTTCTAATGGTACCA
853062 TAAGTACAAACT-AATGCAACTAGGGTGAACAATGATAGATTCTCAGACAGTAGGTTCTTTTGGC
453 TAAGTACAAACTAAATGCAACTAGGGTGAACAATGATAGATTCTCAGACAGTAGGTTCTTTTGGC
*
853126 ATCAATTTCTCATTGCAATACCAAACCAGAGCAGGCAAATAATTAAACACCAACAACAAAGCAAT
518 ATCAATTTCTCATTGCAATGCCAAACCAGAGCAGGCAAATAATTAAACACCAACAACAAAGCAAT
853191 GAAATGTTCTAAGTAGCATAAAACAACTTCCATCCTTTTTTTGACTTTCCTGCTTGCTTCATTGA
583 GAAATGTTCTAAGTAGCATAAAACAACTTCCATCCTTTTTTTGACTTTCCTGCTTGCTTCATTGA
*
853256 GAATTTAGAGAAAGCTAACTTAACAAACACATATAAATGAGTTCATCTAAACAATGCCACTTGAT
648 GAATTTAGAGAAAGCTAACTTAACAAACACATATAAATGAGTTCATATAAACAATGCCACTTGAT
853321 ATGGCTCGCACAGGAATGCTCAATGATGAATC-
713 ATGGCTCGCACAGGAATGCTCAATGATGAATCT
853353 GTCATCTTTGGCTGGGCCAGAGCACACACCTTCTAACCTACAATTAGCACAAGGAAAAACACCAA
1 GTCATCTTTGGCTGGGCCAGAGCAC-CACCTTCTAA-CTACAATTAGCACAAGG-AAAACACCAA
853418 TCAAAAGCAATACTCATCTCAGGAGAAGAATCACATGCCTAAGCAATTATTAGTTACCAACTTCA
63 TCAAAAGCAATACTCATCTCAGGAGAAGAATCACATGCCTAAGCAATTATTAGTTACCAACTTCA
853483 ACAGTTTTAGGCATAAAGTACCTGTCCTTTGGAATTCTGCACATGGCAATATATGCACTCAATAA
128 ACAGTTTTAGGCATAAAGTACCTGTCCTTTGGAATTCTGCACATGGCAATATATGCACTCAATAA
853548 AGTGGCAAGTAACTTCATCAAAGCTTGTCACGGGCCTGAGAATTACAAGAAACCCAAAGAAACAA
193 AGTGGCAAGTAACTTCATCAAAGCTTGTCACGGGCCTGAGAATTACAAGAAACCCAAAGAAACAA
853613 TGACACTAATGCTTACAGAGATGCACAGTAGTGTATTGAATAGAAGTCATATAGTTGTCAATATT
258 TGACACTAATGCTTACAGAGATGCACAGTAGTGTATTGAATAGAAGTCATATAGTTGTCAATATT
* *
853678 ACATATCCTGGGAATATAACAATTAAAGATTTAACAATAAGGGGGCAAATGGCAGAATTGAAGAC
323 ACATATCCTGGGAATATAACAATTAAAGATTTAACAAT---------AATGGCATAAGTGAAGAC
* * *
853743 ATGGTGTTAAATAAAATAATAGATGAAAGAGGCACTGCAC-ATAGAAAGAAGCTAAATGATTTCT
379 ATGGTGTTAAATAAAATAATAGATAAAAGAGGCACTTCACAAT-TAAAGAAGCTAAATGATTTCT
* *
853807 AATGGTACCATAAGTACAAACTAAATGCAACTAAGGTGAACAATGATAGATTATCAGACAGTAGG
443 AATGGTACCATAAGTACAAACTAAATGCAACTAGGGTGAACAATGATAGATTCTCAGACAGTAGG
* *
853872 TTCTTTTGGCATCAATTTCTCATTGCAATACCAAACCAGAGCAGGCAAATAATTAAACACAAACA
508 TTCTTTTGGCATCAATTTCTCATTGCAATGCCAAACCAGAGCAGGCAAATAATTAAACACCAACA
* *
853937 ACAAAGCAATGAAATGTTCTAAGAAGCATAAAACAACTTCCATCCTTGTTTTGACTTTCCTGCTT
573 ACAAAGCAATGAAATGTTCTAAGTAGCATAAAACAACTTCCATCCTTTTTTTGACTTTCCTGCTT
* * *
854002 GCTTCATTGAGAATATAGAGAAAGCTAACTTAACAAACACATATAGATGAGTTCAAATAAACAAT
638 GCTTCATTGAGAATTTAGAGAAAGCTAACTTAACAAACACATATAAATGAGTTCATATAAACAAT
854067 GCCACTTGATATGG
703 GCCACTTGATATGG
854081 ACCAGATGGC
Statistics
Matches: 2899, Mismatches: 36, Indels: 44
0.97 0.01 0.01
Matches are distributed among these distances:
742 93 0.03
743 646 0.22
744 277 0.10
745 755 0.26
746 47 0.02
747 7 0.00
748 363 0.13
749 3 0.00
750 356 0.12
751 13 0.00
753 2 0.00
754 69 0.02
755 26 0.01
756 242 0.08
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.26
Consensus pattern (745 bp):
GTCATCTTTGGCTGGGCCAGAGCACCACCTTCTAACTACAATTAGCACAAGGAAAACACCAATCA
AAAGCAATACTCATCTCAGGAGAAGAATCACATGCCTAAGCAATTATTAGTTACCAACTTCAACA
GTTTTAGGCATAAAGTACCTGTCCTTTGGAATTCTGCACATGGCAATATATGCACTCAATAAAGT
GGCAAGTAACTTCATCAAAGCTTGTCACGGGCCTGAGAATTACAAGAAACCCAAAGAAACAATGA
CACTAATGCTTACAGAGATGCACAGTAGTGTATTGAATAGAAGTCATATAGTTGTCAATATTACA
TATCCTGGGAATATAACAATTAAAGATTTAACAATAATGGCATAAGTGAAGACATGGTGTTAAAT
AAAATAATAGATAAAAGAGGCACTTCACAATTAAAGAAGCTAAATGATTTCTAATGGTACCATAA
GTACAAACTAAATGCAACTAGGGTGAACAATGATAGATTCTCAGACAGTAGGTTCTTTTGGCATC
AATTTCTCATTGCAATGCCAAACCAGAGCAGGCAAATAATTAAACACCAACAACAAAGCAATGAA
ATGTTCTAAGTAGCATAAAACAACTTCCATCCTTTTTTTGACTTTCCTGCTTGCTTCATTGAGAA
TTTAGAGAAAGCTAACTTAACAAACACATATAAATGAGTTCATATAAACAATGCCACTTGATATG
GCTCGCACAGGAATGCTCAATGATGAATCT
Found at i:855278 original size:21 final size:21
Alignment explanation
Indices: 855220--855267 Score: 96
Period size: 21 Copynumber: 2.3 Consensus size: 21
855210 TACCCTGATT
855220 GAAACATATATTCATTTAAAG
1 GAAACATATATTCATTTAAAG
855241 GAAACATATATTCATTTAAAG
1 GAAACATATATTCATTTAAAG
855262 GAAACA
1 GAAACA
855268 AATTAAGATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.50, C:0.10, G:0.10, T:0.29
Consensus pattern (21 bp):
GAAACATATATTCATTTAAAG
Found at i:866559 original size:106 final size:105
Alignment explanation
Indices: 866374--866593 Score: 248
Period size: 106 Copynumber: 2.1 Consensus size: 105
866364 AGTATAGGTT
* * *
866374 ACAACATCAGGCTCAATGCCTTGCTTTCTCATCGTGTCAACAATGTCTTCAGCTTTAGAAACCAT
1 ACAACATCAGGCTCAATGCCTTGCTTTCTCATCGTGTAAACAATATCTTCAGCTTCAGAAACCAT
* * *
866439 TCCCTCCTTGCAATAAGCA-TCAACCAATATATTTATATGTG
66 ACACTCCTTGCAATAAG-AGTCAACCAAGATA-TTATATGTG
* * ***
866480 ACAACATCAGGCTCAATGTCTTGCTTTCTCATTGTGTAAATGGTATCTAT-AGCTTCAGAAATCC
1 ACAACATCAGGCTCAATGCCTTGCTTTCTCATCGTGTAAACAATATCT-TCAGCTTCAGAAA-CC
* * *
866544 -TACACTCCTTGCAATATGAGTCGATCAAGATATTATATGTG
64 ATACACTCCTTGCAATAAGAGTCAACCAAGATATTATATGTG
*
866585 ATAACATCA
1 ACAACATCA
866594 AGTGAAATAT
Statistics
Matches: 96, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
105 18 0.19
106 75 0.78
107 3 0.03
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (105 bp):
ACAACATCAGGCTCAATGCCTTGCTTTCTCATCGTGTAAACAATATCTTCAGCTTCAGAAACCAT
ACACTCCTTGCAATAAGAGTCAACCAAGATATTATATGTG
Found at i:869342 original size:31 final size:30
Alignment explanation
Indices: 869287--869354 Score: 84
Period size: 29 Copynumber: 2.2 Consensus size: 30
869277 CCCTCTAATG
*
869287 TTTTAAATTTTTATATAATTTAATTAT-TT
1 TTTTAAATTTTTATATAATATAATTATATT
* *
869316 TTTTATATTTTTATTGATAATATAATTTTATT
1 TTTTAAATTTTTA-T-ATAATATAATTATATT
869348 TTTTAAA
1 TTTTAAA
869355 ATCTTATAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
29 12 0.38
30 1 0.03
31 11 0.34
32 8 0.25
ACGTcount: A:0.34, C:0.00, G:0.01, T:0.65
Consensus pattern (30 bp):
TTTTAAATTTTTATATAATATAATTATATT
Done.