Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008439.1 Hibiscus syriacus cultivar Beakdansim tig00111238_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2703160
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 6 of 9
Found at i:1385503 original size:22 final size:22
Alignment explanation
Indices: 1385478--1385520 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
1385468 AATTTATTAG
1385478 TATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
1385500 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
1385521 TAATTATTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:1385535 original size:31 final size:31
Alignment explanation
Indices: 1385500--1385622 Score: 156
Period size: 31 Copynumber: 3.7 Consensus size: 31
1385490 TATTTTAAAA
1385500 TATGGATTGATTTATTTTAAATAATTATTAG
1 TATGGATTGATTTATTTTAAATAATTATTAG
1385531 TATGGATTGATTTATTTTAAATAATTTATTATAG
1 TATGGATTGATTTATTTTAAATAA-TTA-T-TAG
1385565 TATTGGATTGATTGATTTATTTTAAATAATATATTAG
1 TA-T-G---GATTGATTTATTTTAAATAAT-TATTAG
*
1385602 TATGAATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
1385623 ATATGAATTG
Statistics
Matches: 82, Mismatches: 1, Indels: 17
0.82 0.01 0.17
Matches are distributed among these distances:
31 24 0.29
32 19 0.23
33 1 0.01
34 5 0.06
35 2 0.02
36 2 0.02
37 5 0.06
38 2 0.02
39 22 0.27
ACGTcount: A:0.36, C:0.00, G:0.12, T:0.52
Consensus pattern (31 bp):
TATGGATTGATTTATTTTAAATAATTATTAG
Found at i:1385591 original size:124 final size:130
Alignment explanation
Indices: 1385366--1385654 Score: 428
Period size: 124 Copynumber: 2.2 Consensus size: 130
1385356 AATTTATTAG
*
1385366 TATGGATTGATTTATTTTAAATAATTTATTTGTATGGATTGATTTATTTTAAAATATGGATTGAT
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTT-AAATAT-GA-T-AT
* * * * *
1385431 TTATTATTGTTGTTGTATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTT
62 TTATTATAGTTATTGGATGGATTGATTTATTTTAAATAATATATTAGTATGAATTGATTTATTTT
1385496 AAAA
127 AAAA
1385500 TATGGATTGATTTATTTTAAATAA-TTATTAGTATGGATTGATTTATTTT-AA-AT-A-ATTTAT
1 TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAATATGATATTTAT
*
1385560 TATAG-TATTGGATTGATTGATTTATTTTAAATAATATATTAGTATGAATTGATTTATTTTAAAA
66 TATAGTTATTGGATGGATTGATTTATTTTAAATAATATATTAGTATGAATTGATTTATTTTAAAA
*
1385624 TATGAATTGATTTATTTTAAATAATTTATTA
1 TATGGATTGATTTATTTTAAATAATTTATTA
1385655 TTGTAGTTGT
Statistics
Matches: 146, Mismatches: 8, Indels: 11
0.88 0.05 0.07
Matches are distributed among these distances:
124 77 0.53
125 16 0.11
128 1 0.01
130 2 0.01
131 2 0.01
133 24 0.16
134 24 0.16
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.53
Consensus pattern (130 bp):
TATGGATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAATATGATATTTAT
TATAGTTATTGGATGGATTGATTTATTTTAAATAATATATTAGTATGAATTGATTTATTTTAAAA
Found at i:1385630 original size:22 final size:22
Alignment explanation
Indices: 1385602--1385644 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
1385592 AATATATTAG
1385602 TATGAATTGATTTATTTTAAAA
1 TATGAATTGATTTATTTTAAAA
1385624 TATGAATTGATTTATTTTAAA
1 TATGAATTGATTTATTTTAAA
1385645 TAATTTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.40, C:0.00, G:0.09, T:0.51
Consensus pattern (22 bp):
TATGAATTGATTTATTTTAAAA
Found at i:1385707 original size:124 final size:122
Alignment explanation
Indices: 1385451--1385687 Score: 300
Period size: 124 Copynumber: 1.9 Consensus size: 122
1385441 TGTTGTATGG
* * *
1385451 ATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATTTATT
1 ATTGATTTATTTTAAATAATATATTAGTATGAATTGATTTATTTTAAAATATGAATTGATTTATT
* * * * **
1385516 TTAAATAATTATTAGTATGGATTGATTTATTTTAAATAATTTATTATAGTATTGGATTG
66 TTAAATAATTATTAGTATGGATGGATTTATTTTAAAT-ATTCAGTATAGTA-TGAATAA
1385575 ATTGATTTATTTTAAATAATATATTAGTATGAATTGATTTATTTTAAAATATGAATTGATTTATT
1 ATTGATTTATTTTAAATAATATATTAGTATGAATTGATTTATTTTAAAATATGAATTGATTTATT
*
1385640 TTAAATAATTTATTATTGTAGTTGTATGGA-TTA-TTTAAAT-TTCAGTAT
66 TTAAATAA-TTATTA--GTA--TGGATGGATTTATTTTAAATATTCAGTAT
1385688 TGTAGAACTA
Statistics
Matches: 101, Mismatches: 7, Indels: 9
0.86 0.06 0.08
Matches are distributed among these distances:
124 70 0.69
125 12 0.12
127 10 0.10
128 3 0.03
129 6 0.06
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.52
Consensus pattern (122 bp):
ATTGATTTATTTTAAATAATATATTAGTATGAATTGATTTATTTTAAAATATGAATTGATTTATT
TTAAATAATTATTAGTATGGATGGATTTATTTTAAATATTCAGTATAGTATGAATAA
Found at i:1410335 original size:44 final size:44
Alignment explanation
Indices: 1410283--1410370 Score: 167
Period size: 44 Copynumber: 2.0 Consensus size: 44
1410273 TCTTAATTAA
1410283 TTTATGCCATAATGACTTTGAATCAGACTAACAATTTCCATCTT
1 TTTATGCCATAATGACTTTGAATCAGACTAACAATTTCCATCTT
*
1410327 TTTATGCCATAATGACTTTGAATCAGGCTAACAATTTCCATCTT
1 TTTATGCCATAATGACTTTGAATCAGACTAACAATTTCCATCTT
1410371 AAAATGAATT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.31, C:0.20, G:0.10, T:0.39
Consensus pattern (44 bp):
TTTATGCCATAATGACTTTGAATCAGACTAACAATTTCCATCTT
Found at i:1412318 original size:25 final size:25
Alignment explanation
Indices: 1412284--1412335 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
1412274 AGTAATTTCC
1412284 CTGCTTCCTTGGTTGCTTGTGTCTT
1 CTGCTTCCTTGGTTGCTTGTGTCTT
1412309 CTGCTTCCTTGGTTGCTTGTGTCTT
1 CTGCTTCCTTGGTTGCTTGTGTCTT
1412334 CT
1 CT
1412336 ATTTTGTTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.00, C:0.25, G:0.23, T:0.52
Consensus pattern (25 bp):
CTGCTTCCTTGGTTGCTTGTGTCTT
Found at i:1414820 original size:18 final size:18
Alignment explanation
Indices: 1414793--1414827 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
1414783 TGACCAACAA
*
1414793 AATCGTAATACGATCTCT
1 AATCGCAATACGATCTCT
*
1414811 AATCGCAATATGATCTC
1 AATCGCAATACGATCTC
1414828 CATATCGTAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.31
Consensus pattern (18 bp):
AATCGCAATACGATCTCT
Found at i:1415061 original size:22 final size:21
Alignment explanation
Indices: 1415010--1415084 Score: 80
Period size: 22 Copynumber: 3.5 Consensus size: 21
1415000 CATCTTCATC
* *
1415010 TCTCACTCTCTCGGCGACATCCG
1 TCTCA-TCTC-CGACGAAATCCG
*
1415033 TCCCATCTCCGACGAAATCCG
1 TCTCATCTCCGACGAAATCCG
*
1415054 TCATCATCTCCGGCGAAATCCG
1 TC-TCATCTCCGACGAAATCCG
1415076 TCT-ATCTCC
1 TCTCATCTCC
1415085 ATCTCTCAGA
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
20 6 0.13
21 13 0.28
22 23 0.50
23 4 0.09
ACGTcount: A:0.19, C:0.41, G:0.15, T:0.25
Consensus pattern (21 bp):
TCTCATCTCCGACGAAATCCG
Found at i:1415686 original size:25 final size:25
Alignment explanation
Indices: 1415633--1415686 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 25
1415623 TGTTTATTAT
*
1415633 TGTTTTTGTATATCTTCACAGTGTA
1 TGTTTTTGTATATCTTAACAGTGTA
1415658 -GTTTTTGGTATATC-TAACTAG-GTA
1 TGTTTTT-GTATATCTTAAC-AGTGTA
1415682 TGTTT
1 TGTTT
1415687 ATTATTTTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
24 12 0.48
25 13 0.52
ACGTcount: A:0.20, C:0.09, G:0.19, T:0.52
Consensus pattern (25 bp):
TGTTTTTGTATATCTTAACAGTGTA
Found at i:1418162 original size:20 final size:20
Alignment explanation
Indices: 1418137--1418181 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
1418127 AGGTACACAT
*
1418137 TCGCAACGCTAAACTCAAAA
1 TCGCAACGCGAAACTCAAAA
* *
1418157 TCGCAATGCGAAAGTCAAAA
1 TCGCAACGCGAAACTCAAAA
1418177 TCGCA
1 TCGCA
1418182 TATATTGTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.42, C:0.27, G:0.16, T:0.16
Consensus pattern (20 bp):
TCGCAACGCGAAACTCAAAA
Found at i:1418523 original size:20 final size:20
Alignment explanation
Indices: 1418498--1418564 Score: 73
Period size: 20 Copynumber: 3.4 Consensus size: 20
1418488 GAAATTCAGT
*
1418498 GTTGCGATAGTCAGAATCGC
1 GTTGCGATAGTCAAAATCGC
* * *
1418518 GTTGCGAT-TTACACATTCGC
1 GTTGCGATAGT-CAAAATCGC
*
1418538 ATTGCGATAGTCAAAATCGC
1 GTTGCGATAGTCAAAATCGC
1418558 GTTGCGA
1 GTTGCGA
1418565 ATCTGAAAAA
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
19 1 0.03
20 35 0.95
21 1 0.03
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.28
Consensus pattern (20 bp):
GTTGCGATAGTCAAAATCGC
Found at i:1423116 original size:180 final size:181
Alignment explanation
Indices: 1422814--1423173 Score: 663
Period size: 180 Copynumber: 2.0 Consensus size: 181
1422804 TGAGATCTCT
1422814 AGTGGACAACAAAACAATTTCGTGTTTAGGGTAAGGAGCATGAAAAAGATAGATGATTGTTTAAA
1 AGTGGACAACAAAACAATTTCGTGTTTAGGGTAAGGAGCATGAAAAAGATAGATGATTGTTTAAA
*
1422879 TTGTGTTTTTTTTTTCCTCCTTACTTTATCTGGACAATTCACACTGTTTTTTTGCCCCTCACTCT
66 TTGTG-TTTTTTTTTCCTCCTTACTTTATCTGGACAATTCACACTGTTTTTTTGCCCCCCACTCT
1422944 CTCTGCATGCAATCGCCAGTC-TGTACAGAAC-TGAGGAAGTTTCATTGTGA
130 CTCTGCATGCAATCGCCAGTCTTGTACAGAACTTGAGGAAGTTTCATTGTGA
1422994 AGTGGACAACAAAACAATTTCGTGTTTAGGGTAAGGAGCATGAAAAAGATAGATGATTTGTTTAA
1 AGTGGACAACAAAACAATTTCGTGTTTAGGGTAAGGAGCATGAAAAAGATAGATGA-TTGTTTAA
1423059 ATTGTG-TTTTTTTTCCTCCTTACTTTATCTGGACAATTCAACACTGTTTTTTTGCCCCCCACTC
65 ATTGTGTTTTTTTTTCCTCCTTACTTTATCTGGACAATTC-ACACTGTTTTTTTGCCCCCCACTC
1423123 TCTCTGCATGCAATCGCCAGTCTTGTACAGAACTTGAGGAAGTTTCATTGT
129 TCTCTGCATGCAATCGCCAGTCTTGTACAGAACTTGAGGAAGTTTCATTGT
1423174 TGAAAGTGTT
Statistics
Matches: 175, Mismatches: 1, Indels: 6
0.96 0.01 0.03
Matches are distributed among these distances:
179 33 0.19
180 101 0.58
181 24 0.14
182 17 0.10
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.36
Consensus pattern (181 bp):
AGTGGACAACAAAACAATTTCGTGTTTAGGGTAAGGAGCATGAAAAAGATAGATGATTGTTTAAA
TTGTGTTTTTTTTTCCTCCTTACTTTATCTGGACAATTCACACTGTTTTTTTGCCCCCCACTCTC
TCTGCATGCAATCGCCAGTCTTGTACAGAACTTGAGGAAGTTTCATTGTGA
Found at i:1426682 original size:2 final size:2
Alignment explanation
Indices: 1426675--1426707 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
1426665 GCCTGATAAC
1426675 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1426708 TGAAGTAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1434998 original size:26 final size:26
Alignment explanation
Indices: 1434962--1435027 Score: 132
Period size: 26 Copynumber: 2.5 Consensus size: 26
1434952 CCCAACAGCA
1434962 ATCATATATTTTTCGTGTCAGGTCGG
1 ATCATATATTTTTCGTGTCAGGTCGG
1434988 ATCATATATTTTTCGTGTCAGGTCGG
1 ATCATATATTTTTCGTGTCAGGTCGG
1435014 ATCATATATTTTTC
1 ATCATATATTTTTC
1435028 ATCCTAAATT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.21, C:0.15, G:0.18, T:0.45
Consensus pattern (26 bp):
ATCATATATTTTTCGTGTCAGGTCGG
Found at i:1435202 original size:30 final size:28
Alignment explanation
Indices: 1435166--1435222 Score: 87
Period size: 30 Copynumber: 2.0 Consensus size: 28
1435156 TCATGGATTA
1435166 AACATGTCTTCCCTTAATAATAATGAAAAG
1 AACATGTCTTCCCTT--TAATAATGAAAAG
*
1435196 AACATGTCTTCCCTTTAATACTGAAAA
1 AACATGTCTTCCCTTTAATAATGAAAA
1435223 AAGAAAACAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 11 0.42
30 15 0.58
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (28 bp):
AACATGTCTTCCCTTTAATAATGAAAAG
Found at i:1436470 original size:186 final size:185
Alignment explanation
Indices: 1436157--1436528 Score: 719
Period size: 186 Copynumber: 2.0 Consensus size: 185
1436147 TCAGATAGAA
1436157 AGAGCTGAGAAACAACTTTCAGATCGAGAAGATGACCAGGCAAAACGCTGCTCGATTTAGTCCTA
1 AGAGCTGAGAAACAACTTTCAGATCGAGAAGATGACCAGGCAAAACGCTGCTCGATTTAGTCCTA
1436222 AGAGCTCTGGGCGAATCCAGGCTTCGACGAAGAATCCTTCCCATGGCAAAAATGGGGTGCTCCGT
66 AGAGCTCTGGGCGAATCCAGGCTTCGACGAAGAATCCTTCCCATGGCAAAAATGGGGTGCTCCGT
1436287 CTTATCAGAAGGATTCCACGCCCT-AACTTCTCGCAGCAAACTGATGTGTCGCTCC
131 CTTATCAGAAGGATTCCACGCCCTAAACTTCTCGCAG-AAACTGATGTGTCGCTCC
1436342 AGAGCTGAGAAACAACTTTCAGATCGAAGAAGATGACCAGGCAAAACGCTGCTCGATTTAGTCCT
1 AGAGCTGAGAAACAACTTTCAGATCG-AGAAGATGACCAGGCAAAACGCTGCTCGATTTAGTCCT
1436407 AAGAGCTCTGGGCGAATCCAGGCTTCGACGAAGAATCCTTCCCATGGCAAAAATGGGGTGCTCCG
65 AAGAGCTCTGGGCGAATCCAGGCTTCGACGAAGAATCCTTCCCATGGCAAAAATGGGGTGCTCCG
1436472 TCTTATCAGAAGGATTCCACGCCCTAAACTTCTCGCAGAAACTGATGTGTCGCTCC
130 TCTTATCAGAAGGATTCCACGCCCTAAACTTCTCGCAGAAACTGATGTGTCGCTCC
1436528 A
1 A
1436529 ACGCTTCCTC
Statistics
Matches: 185, Mismatches: 0, Indels: 3
0.98 0.00 0.02
Matches are distributed among these distances:
185 26 0.14
186 147 0.79
187 12 0.06
ACGTcount: A:0.29, C:0.26, G:0.24, T:0.22
Consensus pattern (185 bp):
AGAGCTGAGAAACAACTTTCAGATCGAGAAGATGACCAGGCAAAACGCTGCTCGATTTAGTCCTA
AGAGCTCTGGGCGAATCCAGGCTTCGACGAAGAATCCTTCCCATGGCAAAAATGGGGTGCTCCGT
CTTATCAGAAGGATTCCACGCCCTAAACTTCTCGCAGAAACTGATGTGTCGCTCC
Found at i:1440105 original size:17 final size:16
Alignment explanation
Indices: 1440082--1440120 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
1440072 TCGTGTTTAA
1440082 AATTTTAAATTATTAT
1 AATTTTAAATTATTAT
* *
1440098 ATATTTTAATTTTTTAT
1 A-ATTTTAAATTATTAT
1440115 AATTTT
1 AATTTT
1440121 TATTAAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (16 bp):
AATTTTAAATTATTAT
Found at i:1440594 original size:17 final size:16
Alignment explanation
Indices: 1440568--1440599 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
1440558 AAAAAAATTA
1440568 GGTTAAACCGGTTCAC
1 GGTTAAACCGGTTCAC
1440584 GGTTCAAACCGGTTCA
1 GGTT-AAACCGGTTCA
1440600 AATGGTTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (16 bp):
GGTTAAACCGGTTCAC
Found at i:1440699 original size:27 final size:27
Alignment explanation
Indices: 1440668--1440728 Score: 115
Period size: 27 Copynumber: 2.3 Consensus size: 27
1440658 AATAGAATAG
1440668 ACCAGACCAATCAACGGTTCCGGTCGA
1 ACCAGACCAATCAACGGTTCCGGTCGA
1440695 ACCAGACCAATCAACGGTTCCGGTCGA
1 ACCAGACCAATCAACGGTTCCGGTCGA
1440722 ACC-GACC
1 ACCAGACC
1440729 GATCCGATTT
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 4 0.12
27 30 0.88
ACGTcount: A:0.30, C:0.36, G:0.21, T:0.13
Consensus pattern (27 bp):
ACCAGACCAATCAACGGTTCCGGTCGA
Found at i:1451190 original size:3 final size:3
Alignment explanation
Indices: 1451171--1451229 Score: 82
Period size: 3 Copynumber: 19.0 Consensus size: 3
1451161 TTGTAATTTT
**
1451171 TAA TAAA TAA TATA TAA TAA TAA TAA TAA TAA TAA TAA TAA TTT TAA
1 TAA T-AA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1451218 TAA TAA TAA TAA
1 TAA TAA TAA TAA
1451230 GCTTAAATGA
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
3 44 0.88
4 6 0.12
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:1451407 original size:45 final size:45
Alignment explanation
Indices: 1451356--1451503 Score: 260
Period size: 45 Copynumber: 3.3 Consensus size: 45
1451346 GATGGAAATG
* *
1451356 TTTGAAAACATCATGCACTGAAGGGCTTACAGATAACCCGAAGGT
1 TTTGAAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGT
1451401 TTTGAAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGT
1 TTTGAAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGT
* *
1451446 TTTGAAAACATCATGCACTGAAGGACTTACAGATGACCCTAAGGC
1 TTTGAAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGT
1451491 TTTGAAAACATCA
1 TTTGAAAACATCA
1451504 AAAAGCTACC
Statistics
Matches: 99, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 99 1.00
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.23
Consensus pattern (45 bp):
TTTGAAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGT
Found at i:1451536 original size:76 final size:76
Alignment explanation
Indices: 1451437--1452462 Score: 1879
Period size: 76 Copynumber: 13.6 Consensus size: 76
1451427 TTACAGATGA
* *
1451437 CCCGAAGG--TTTTGAAAACATCATGCACTGAAGGACTTACAGATGACCCTAAGGCTTTGAAAAC
1 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
1451500 ATCAAAAAGCT
66 ATCAAAAAGCT
*
1451511 ACCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
1 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
1451576 ATCAAAAAGCT
66 ATCAAAAAGCT
* *
1451587 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAAC
1 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
1451652 ATCAAAAAGCT
66 ATCAAAAAGCT
1451663 CCCGAAGGCTTTTTGG-AA-ATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
1 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
1451726 ATCAAAAAGCT
66 ATCAAAAAGCT
1451737 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
1 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
1451802 ATCAAAAAGCT
66 ATCAAAAAGCT
*
1451813 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTAAAAAC
1 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
1451878 ATCAAAAAGCT
66 ATCAAAAAGCT
* * *
1451889 CCCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCTGAAGGATTTGAAAAC
1 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
1451954 ATCAAAAAGCT
66 ATCAAAAAGCT
* *
1451965 CCCGAAGGCTTTTTTGAAATATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
1 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
1452030 ATCAAAAAGCT
66 ATCAAAAAGCT
1452041 -CCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
1 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
1452105 ATC-AAAAGCT
66 ATCAAAAAGCT
1452115 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
1 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
1452180 ATCAAAAAGCT
66 ATCAAAAAGCT
*
1452191 CCCGAAGGC-TTTTGGAAACATCATGCACTGAAGGACTTACAGATAACCCGAAGGCTTTGAAAAC
1 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
1452255 ATCAAAAAGCT
66 ATCAAAAAGCT
1452266 -CCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
1 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
1452330 ATCAAAAAGCT
66 ATCAAAAAGCT
1452341 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
1 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
1452406 ATCAAAAAGCT
66 ATCAAAAAGCT
*
1452417 TCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATG
1 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATG
1452463 TGAGAAATAG
Statistics
Matches: 921, Mismatches: 23, Indels: 14
0.96 0.02 0.01
Matches are distributed among these distances:
74 92 0.10
75 266 0.29
76 563 0.61
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.22
Consensus pattern (76 bp):
CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
ATCAAAAAGCT
Found at i:1451736 original size:150 final size:152
Alignment explanation
Indices: 1451437--1452462 Score: 1879
Period size: 150 Copynumber: 6.8 Consensus size: 152
1451427 TTACAGATGA
* *
1451437 CCCGAAGG--TTTTGAAAACATCATGCACTGAAGGACTTACAGATGACCCTAAGGCTTTGAAAAC
1 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
*
1451500 ATCAAAAAGCTACCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAG
66 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAG
1451565 GCTTTGAAAACATCAAAAAGCT
131 GCTTTGAAAACATCAAAAAGCT
* *
1451587 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGGCTTACAGATGACCCGAAGGTTTTGAAAAC
1 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
1451652 ATCAAAAAGCTCCCGAAGGCTTTTTGG-AA-ATCATGCACTGAAGGACTTACAGATGACCCGAAG
66 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAG
1451715 GCTTTGAAAACATCAAAAAGCT
131 GCTTTGAAAACATCAAAAAGCT
1451737 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
1 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
1451802 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAG
66 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAG
*
1451867 GCTTTAAAAACATCAAAAAGCT
131 GCTTTGAAAACATCAAAAAGCT
* * *
1451889 CCCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCTGAAGGATTTGAAAAC
1 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
* *
1451954 ATCAAAAAGCTCCCGAAGGCTTTTTTGAAATATCATGCACTGAAGGACTTACAGATGACCCGAAG
66 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAG
1452019 GCTTTGAAAACATCAAAAAGCT
131 GCTTTGAAAACATCAAAAAGCT
1452041 -CCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
1 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
1452105 ATC-AAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAG
66 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAG
1452169 GCTTTGAAAACATCAAAAAGCT
131 GCTTTGAAAACATCAAAAAGCT
*
1452191 CCCGAAGGC-TTTTGGAAACATCATGCACTGAAGGACTTACAGATAACCCGAAGGCTTTGAAAAC
1 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
1452255 ATCAAAAAGCT-CCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAG
66 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAG
1452319 GCTTTGAAAACATCAAAAAGCT
131 GCTTTGAAAACATCAAAAAGCT
1452341 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
1 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
*
1452406 ATCAAAAAGCTTCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATG
66 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATG
1452463 TGAGAAATAG
Statistics
Matches: 847, Mismatches: 21, Indels: 14
0.96 0.02 0.02
Matches are distributed among these distances:
150 376 0.44
151 148 0.17
152 323 0.38
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.22
Consensus pattern (152 bp):
CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAG
GCTTTGAAAACATCAAAAAGCT
Found at i:1451831 original size:226 final size:227
Alignment explanation
Indices: 1451437--1452462 Score: 1875
Period size: 226 Copynumber: 4.5 Consensus size: 227
1451427 TTACAGATGA
* *
1451437 CCCGAAGG--TTTTGAAAACATCATGCACTGAAGGACTTACAGATGACCCTAAGGCTTTGAAAAC
1 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
*
1451500 ATCAAAAAGCTACCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAG
66 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAG
*
1451565 GCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGGCTTACAG
131 GCTTTGAAAACATCAAAAAGCT-CCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAG
*
1451630 ATGACCCGAAGGTTTTGAAAACATCAAAAAGCT
195 ATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
1451663 CCCGAAGGCTTTTTGG-AA-ATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
1 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
1451726 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAG
66 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAG
1451791 GCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAG
131 GCTTTGAAAACATCAAAAAGCT-CCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAG
*
1451856 ATGACCCGAAGGCTTTAAAAACATCAAAAAGCT
195 ATGACCCGAAGGCTTTGAAAACATCAAAAAGCT
* * *
1451889 CCCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCTGAAGGATTTGAAAAC
1 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
* *
1451954 ATCAAAAAGCTCCCGAAGGCTTTTTTGAAATATCATGCACTGAAGGACTTACAGATGACCCGAAG
66 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAG
1452019 GCTTTGAAAACATCAAAAAGCTCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGA
131 GCTTTGAAAACATCAAAAAGCTCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGA
1452084 TGACCCGAAGGCTTTGAAAACATC-AAAAGCT
196 TGACCCGAAGGCTTTGAAAACATCAAAAAGCT
1452115 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
1 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
*
1452180 ATCAAAAAGCTCCCGAAGGC-TTTTGGAAACATCATGCACTGAAGGACTTACAGATAACCCGAAG
66 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAG
1452244 GCTTTGAAAACATCAAAAAGCTCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGA
131 GCTTTGAAAACATCAAAAAGCTCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGA
1452309 TGACCCGAAGGCTTTGAAAACATCAAAAAGCT
196 TGACCCGAAGGCTTTGAAAACATCAAAAAGCT
1452341 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
1 CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
*
1452406 ATCAAAAAGCTTCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATG
66 ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATG
1452463 TGAGAAATAG
Statistics
Matches: 774, Mismatches: 20, Indels: 11
0.96 0.02 0.01
Matches are distributed among these distances:
225 130 0.17
226 407 0.53
227 105 0.14
228 132 0.17
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.22
Consensus pattern (227 bp):
CCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAAC
ATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAG
GCTTTGAAAACATCAAAAAGCTCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGA
TGACCCGAAGGCTTTGAAAACATCAAAAAGCT
Found at i:1453613 original size:54 final size:54
Alignment explanation
Indices: 1453531--1453642 Score: 161
Period size: 54 Copynumber: 2.1 Consensus size: 54
1453521 CGAATAGCAG
***
1453531 GTTCGTAAAACATTTAACAGTGCATTCATCCTTTCCTGTGGCTTCTGCTCAGAT
1 GTTCGTAAAACATTTAACAACACATTCATCCTTTCCTGTGGCTTCTGCTCAGAT
* ** *
1453585 GTTCGTAAAACATTTGACAACACATTCATCCTTTTTTGTGGCTTCTGCTCAGCT
1 GTTCGTAAAACATTTAACAACACATTCATCCTTTCCTGTGGCTTCTGCTCAGAT
1453639 GTTC
1 GTTC
1453643 TCAATCATTG
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.21, C:0.24, G:0.16, T:0.38
Consensus pattern (54 bp):
GTTCGTAAAACATTTAACAACACATTCATCCTTTCCTGTGGCTTCTGCTCAGAT
Found at i:1455028 original size:114 final size:114
Alignment explanation
Indices: 1454828--1455167 Score: 572
Period size: 114 Copynumber: 3.0 Consensus size: 114
1454818 GATCATGCAG
* * ** * * * * * *
1454828 TTCATCTTTCAATTCCAATGATCAGTTCTGGGGTTCTTACCGAATCAGATCAGATAACTCAAAGA
1 TTCATCTTTTAAATCCAATGATTGGTTTTGGAGTTCATACCAAACCAGATCAGATAACTTAAAGA
* *
1454893 ACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTATGAGCAAA
66 ACACTTCCAGAAGATGCTATTGAGTCTTCTTATTTCTACTATGAGCAAA
1454942 TTCATCTTTTAAATCCAATGATTGGTTTTGGAGTTCATACCAAACCAGATCAGATAACTTAAAGA
1 TTCATCTTTTAAATCCAATGATTGGTTTTGGAGTTCATACCAAACCAGATCAGATAACTTAAAGA
1455007 ACACTTCCAGAAGATGCTATTGAGTCTTCTTATTTCTACTATGAGCAAA
66 ACACTTCCAGAAGATGCTATTGAGTCTTCTTATTTCTACTATGAGCAAA
1455056 TTCATCTTTTAAATCCAATGATTGGTTTTGGAGTTCATACCAAACCAGATCAGATAACTTAAAGA
1 TTCATCTTTTAAATCCAATGATTGGTTTTGGAGTTCATACCAAACCAGATCAGATAACTTAAAGA
1455121 ACACTTCCAGAAGATGCTATTGAGTCTTCTTATTTCTACTATGAGCA
66 ACACTTCCAGAAGATGCTATTGAGTCTTCTTATTTCTACTATGAGCA
1455168 CGTGGCACTT
Statistics
Matches: 214, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
114 214 1.00
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.34
Consensus pattern (114 bp):
TTCATCTTTTAAATCCAATGATTGGTTTTGGAGTTCATACCAAACCAGATCAGATAACTTAAAGA
ACACTTCCAGAAGATGCTATTGAGTCTTCTTATTTCTACTATGAGCAAA
Found at i:1457436 original size:17 final size:16
Alignment explanation
Indices: 1457414--1457447 Score: 59
Period size: 17 Copynumber: 2.1 Consensus size: 16
1457404 TTCAATTTTC
1457414 TTTTTTCTTCTTCTCTT
1 TTTTTTCTTCTT-TCTT
1457431 TTTTTTCTTCTTTCTT
1 TTTTTTCTTCTTTCTT
1457447 T
1 T
1457448 GTTGGATAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (16 bp):
TTTTTTCTTCTTTCTT
Found at i:1462008 original size:9 final size:9
Alignment explanation
Indices: 1461988--1462030 Score: 54
Period size: 9 Copynumber: 4.9 Consensus size: 9
1461978 AAAACTTGAA
1461988 AATAAA-AT
1 AATAAATAT
1461996 AATAAATAT
1 AATAAATAT
1462005 AATAAATAT
1 AATAAATAT
*
1462014 TATGAAA-AT
1 AAT-AAATAT
1462023 AATAAATA
1 AATAAATA
1462031 ATAAAAAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
8 9 0.30
9 18 0.60
10 3 0.10
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (9 bp):
AATAAATAT
Found at i:1462039 original size:18 final size:18
Alignment explanation
Indices: 1461993--1462040 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
1461983 TTGAAAATAA
*
1461993 AATAATAAATATAATAAAT
1 AATAA-AAAAATAATAAAT
* **
1462012 ATTATGAAAATAATAAAT
1 AATAAAAAAATAATAAAT
1462030 AATAAAAAAAT
1 AATAAAAAAAT
1462041 TGAAATAAAA
Statistics
Matches: 22, Mismatches: 7, Indels: 1
0.73 0.23 0.03
Matches are distributed among these distances:
18 19 0.86
19 3 0.14
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (18 bp):
AATAAAAAAATAATAAAT
Found at i:1462046 original size:17 final size:17
Alignment explanation
Indices: 1462025--1462066 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
1462015 ATGAAAATAA
*
1462025 TAAATAATA-AAAAAAT
1 TAAATAAAAGAAAAAAT
1462041 TGAAATAAAAGAAAAAAT
1 T-AAATAAAAGAAAAAAT
1462059 TAAATAAA
1 TAAATAAA
1462067 TGATTTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
16 1 0.04
17 14 0.61
18 8 0.35
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.21
Consensus pattern (17 bp):
TAAATAAAAGAAAAAAT
Found at i:1464283 original size:3 final size:3
Alignment explanation
Indices: 1464264--1464325 Score: 70
Period size: 3 Copynumber: 20.0 Consensus size: 3
1464254 TTGTAATTTT
** **
1464264 TAA TAAA TAA TATA TAA TAA TAA TAA TAA TAA TAA TAA TTT TAA TTT
1 TAA T-AA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1464311 TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA
1464326 GCTTAAATGA
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
3 43 0.88
4 6 0.12
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (3 bp):
TAA
Found at i:1469189 original size:29 final size:29
Alignment explanation
Indices: 1469144--1469210 Score: 107
Period size: 29 Copynumber: 2.3 Consensus size: 29
1469134 AACTAAATTG
*
1469144 ATGACATCATTACTTAAATGATGTAAGCA
1 ATGACATCATTAATTAAATGATGTAAGCA
* *
1469173 ATGACATCTTTAATTAAATGATGTAAGTA
1 ATGACATCATTAATTAAATGATGTAAGCA
1469202 ATGACATCA
1 ATGACATCA
1469211 ATTTAGTTTG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.42, C:0.12, G:0.13, T:0.33
Consensus pattern (29 bp):
ATGACATCATTAATTAAATGATGTAAGCA
Found at i:1473949 original size:29 final size:29
Alignment explanation
Indices: 1473904--1473970 Score: 107
Period size: 29 Copynumber: 2.3 Consensus size: 29
1473894 AACTAAATTG
*
1473904 ATGACATCATTACTTAAATGATGTAAGCA
1 ATGACATCATTAATTAAATGATGTAAGCA
* *
1473933 ATGACATCTTTAATTAAATGATGTAAGTA
1 ATGACATCATTAATTAAATGATGTAAGCA
1473962 ATGACATCA
1 ATGACATCA
1473971 ATTTAGTTTG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.42, C:0.12, G:0.13, T:0.33
Consensus pattern (29 bp):
ATGACATCATTAATTAAATGATGTAAGCA
Found at i:1479846 original size:25 final size:26
Alignment explanation
Indices: 1479799--1479848 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
1479789 AAATTTATTT
*
1479799 AAAAAATCATAAAACCATAAAATGTC
1 AAAAAATCATAAAACAATAAAATGTC
1479825 AAAAAATC-TAAAA-AATACAAATGT
1 AAAAAATCATAAAACAATA-AAATGT
1479849 TATTTTTAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 3 0.14
25 11 0.50
26 8 0.36
ACGTcount: A:0.64, C:0.12, G:0.04, T:0.20
Consensus pattern (26 bp):
AAAAAATCATAAAACAATAAAATGTC
Found at i:1479939 original size:23 final size:21
Alignment explanation
Indices: 1479913--1479958 Score: 56
Period size: 23 Copynumber: 2.1 Consensus size: 21
1479903 TATCAATTTT
* *
1479913 AATTTTTTAAACAAGTATAATAA
1 AATTTTTGAAA-AA-TAAAATAA
1479936 AATTTTTGAAAAATAAAATAA
1 AATTTTTGAAAAATAAAATAA
1479957 AA
1 AA
1479959 ATTAAAACAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 9 0.43
22 2 0.10
23 10 0.48
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (21 bp):
AATTTTTGAAAAATAAAATAA
Found at i:1480614 original size:2 final size:2
Alignment explanation
Indices: 1480551--1480596 Score: 85
Period size: 2 Copynumber: 23.5 Consensus size: 2
1480541 ATTATGCTTT
1480551 TA TA TA TA TA TA TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1480592 TA TA T
1 TA TA T
1480597 TATCTTTCAA
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 42 0.98
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1482801 original size:16 final size:17
Alignment explanation
Indices: 1482777--1482820 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
1482767 TTTTAAAATT
* *
1482777 TTTAGAATTTAATAT-A
1 TTTATAATTAAATATAA
*
1482793 TTTTTAATTAAATATAA
1 TTTATAATTAAATATAA
1482810 TTTATAATTAA
1 TTTATAATTAA
1482821 TTTAAATAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
16 12 0.52
17 11 0.48
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (17 bp):
TTTATAATTAAATATAA
Found at i:1503221 original size:17 final size:18
Alignment explanation
Indices: 1503186--1503227 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
1503176 CAGAGGTCCC
1503186 TTAA-TTATTATCAAATAA
1 TTAATTTATTAT-AAATAA
1503204 TTAATTTATTAT-AATAA
1 TTAATTTATTATAAATAA
*
1503221 TAAATTT
1 TTAATTT
1503228 TGATAATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 11 0.50
18 4 0.18
19 7 0.32
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (18 bp):
TTAATTTATTATAAATAA
Found at i:1504564 original size:2 final size:2
Alignment explanation
Indices: 1504557--1504608 Score: 104
Period size: 2 Copynumber: 26.0 Consensus size: 2
1504547 ACCCGACCCA
1504557 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1504599 AT AT AT AT AT
1 AT AT AT AT AT
1504609 TTAGAGATAA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1506102 original size:6 final size:6
Alignment explanation
Indices: 1506091--1506134 Score: 88
Period size: 6 Copynumber: 7.3 Consensus size: 6
1506081 AAGGATGGAT
1506091 TAGGGA TAGGGA TAGGGA TAGGGA TAGGGA TAGGGA TAGGGA TA
1 TAGGGA TAGGGA TAGGGA TAGGGA TAGGGA TAGGGA TAGGGA TA
1506135 ATGTTGAGCG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.34, C:0.00, G:0.48, T:0.18
Consensus pattern (6 bp):
TAGGGA
Found at i:1507783 original size:5 final size:5
Alignment explanation
Indices: 1507773--1507805 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
1507763 GGGAGGACAA
1507773 AATTT AATTT AATTT AATTT AATTT AA-TT AATT
1 AATTT AATTT AATTT AATTT AATTT AATTT AATT
1507806 ATGACTTTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 23 0.85
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
AATTT
Found at i:1509364 original size:18 final size:19
Alignment explanation
Indices: 1509325--1509364 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 19
1509315 CCCATTAGTC
1509325 CATT-ATTCGATAGAATTT
1 CATTAATTCGATAGAATTT
*
1509343 -ATTAATTCG-TATAATTT
1 CATTAATTCGATAGAATTT
1509360 CATTA
1 CATTA
1509365 TTGATGCATT
Statistics
Matches: 19, Mismatches: 1, Indels: 4
0.79 0.04 0.17
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.35, C:0.10, G:0.07, T:0.47
Consensus pattern (19 bp):
CATTAATTCGATAGAATTT
Found at i:1515133 original size:23 final size:23
Alignment explanation
Indices: 1515098--1515151 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 23
1515088 TTTAATTATT
1515098 ATTATA-TTTTTTTAAAATGTTTA
1 ATTATATTTTTTTTAAAAT-TTTA
*
1515121 ATTA-ATTTATTTTTAGAATTTTA
1 ATTATATTT-TTTTTAAAATTTTA
1515144 ATTATATT
1 ATTATATT
1515152 CGAAAAACAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
22 1 0.04
23 14 0.52
24 12 0.44
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (23 bp):
ATTATATTTTTTTTAAAATTTTA
Found at i:1527928 original size:14 final size:14
Alignment explanation
Indices: 1527909--1527971 Score: 72
Period size: 14 Copynumber: 4.4 Consensus size: 14
1527899 ATGTTATTTT
1527909 AATTTCAGCCTTTA
1 AATTTCAGCCTTTA
*
1527923 AATTTCAGCATTTA
1 AATTTCAGCCTTTA
*
1527937 CATTTCAGTCCTTTA
1 AATTTCAG-CCTTTA
* *
1527952 AATTCCAGCTTTTA
1 AATTTCAGCCTTTA
*
1527966 ATTTTC
1 AATTTC
1527972 TGAATTGTTT
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
14 29 0.73
15 11 0.28
ACGTcount: A:0.27, C:0.21, G:0.06, T:0.46
Consensus pattern (14 bp):
AATTTCAGCCTTTA
Found at i:1527941 original size:28 final size:28
Alignment explanation
Indices: 1527906--1527969 Score: 94
Period size: 29 Copynumber: 2.3 Consensus size: 28
1527896 TTTATGTTAT
*
1527906 TTTAATTTCAG-CCTTTAAATTTCAGCA
1 TTTAATTTCAGTCCTTTAAATTCCAGCA
*
1527933 TTTACATTTCAGTCCTTTAAATTCCAGCT
1 TTTA-ATTTCAGTCCTTTAAATTCCAGCA
1527962 TTTAATTT
1 TTTAATTT
1527970 TCTGAATTGT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
27 4 0.12
28 11 0.33
29 18 0.55
ACGTcount: A:0.27, C:0.19, G:0.06, T:0.48
Consensus pattern (28 bp):
TTTAATTTCAGTCCTTTAAATTCCAGCA
Found at i:1536257 original size:209 final size:207
Alignment explanation
Indices: 1535906--1536312 Score: 751
Period size: 209 Copynumber: 2.0 Consensus size: 207
1535896 TAATAATAGG
*
1535906 AAAGAAGATAATTATATGTATGCGTGGATATATATATATAGATGAATATATGAAAGGTGCATAGT
1 AAAGAAGATAACTATATGTATGCGTGGATATATATATATAGATGAATATATGAAAGGTGCATAGT
1535971 AAGAATTATTATATGTATATGTGGGTGTGATGCTTGTATGTGATATGTTAGTAGAAATTATTCAA
66 AAGAATTATTATATGTATATGTGGGTGTGATGCTTGTATGTGATATGTTAGTAGAAATTATTCAA
* *
1536036 GCATGCTTACGAGTTAGAGTTTTATTATATGTTTTATGCCTCACTAAGTCAACGACTTAGCGTGT
131 GCATGATTACGAGTTAGAGTTTTATTATATGTTTTATGCCTCACTAAGTCAACGACTTAGCATGT
1536101 GATAATGATAAT
196 GATAATGATAAT
1536113 AAAGAAGATAACTATATGTATGCGTGGATATATATATATATAGATGAATATATGAAAGGTGCATA
1 AAAGAAGATAACTATATGTATGCGTGG--ATATATATATATAGATGAATATATGAAAGGTGCATA
* *
1536178 GTAGGAATTATTATATGTATATGTGGGTGTGATGCTTGTATGTGATATGTTAGTAGAAATTGTTC
64 GTAAGAATTATTATATGTATATGTGGGTGTGATGCTTGTATGTGATATGTTAGTAGAAATTATTC
1536243 AAGCATGATTACGAGTTAGAGTTTTATTATATGTTTTATGCCTCACTAAGTCAACGACTTAGCAT
129 AAGCATGATTACGAGTTAGAGTTTTATTATATGTTTTATGCCTCACTAAGTCAACGACTTAGCAT
1536308 GTGAT
194 GTGAT
1536313 TGTTTCATAC
Statistics
Matches: 193, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
207 26 0.13
209 167 0.87
ACGTcount: A:0.34, C:0.07, G:0.22, T:0.37
Consensus pattern (207 bp):
AAAGAAGATAACTATATGTATGCGTGGATATATATATATAGATGAATATATGAAAGGTGCATAGT
AAGAATTATTATATGTATATGTGGGTGTGATGCTTGTATGTGATATGTTAGTAGAAATTATTCAA
GCATGATTACGAGTTAGAGTTTTATTATATGTTTTATGCCTCACTAAGTCAACGACTTAGCATGT
GATAATGATAAT
Found at i:1536896 original size:8 final size:8
Alignment explanation
Indices: 1536883--1536914 Score: 64
Period size: 8 Copynumber: 4.0 Consensus size: 8
1536873 GTGTACACGT
1536883 GAAAGAGA
1 GAAAGAGA
1536891 GAAAGAGA
1 GAAAGAGA
1536899 GAAAGAGA
1 GAAAGAGA
1536907 GAAAGAGA
1 GAAAGAGA
1536915 AAGACCAGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (8 bp):
GAAAGAGA
Found at i:1541779 original size:2 final size:2
Alignment explanation
Indices: 1541774--1541804 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
1541764 AACTTAAAAT
1541774 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1541805 TAAAAATTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1541826 original size:17 final size:18
Alignment explanation
Indices: 1541804--1541838 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
1541794 TATATATATA
1541804 TTAAAAAT-TCAAAAAAT
1 TTAAAAATCTCAAAAAAT
*
1541821 TTAAAAATCTTAAAAAAT
1 TTAAAAATCTCAAAAAAT
1541839 ATCCCAAAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (18 bp):
TTAAAAATCTCAAAAAAT
Found at i:1545948 original size:276 final size:276
Alignment explanation
Indices: 1545444--1546287 Score: 1399
Period size: 291 Copynumber: 3.0 Consensus size: 276
1545434 TTTGATACTT
* * *
1545444 ATGGTGTCTATGTAATTTCCATGTGCAAAGTTGATAATTCCCATTGCATCAAATGGTTCATATT-
1 ATGGTCTCTATATAATTTCCATGTTCAAAGTTGATAATTCCCATTGCATCAAATGGTTCATATTC
* * * * *
1545508 TTTTTCCTTGGGTTGATGGGTACTGATTGTAGTTCTTTGATTTTAATATGAATAAACATACCTTA
66 TTTTTCCTTGGATTGATGGGTACTGATGGTAGTTCTTTGATTTTAATGTGAATGAACATACCCTA
* * * *
1545573 AAGTTATTTCTTCCATCACATACCCTCGCATATCTCATTAGCTATCATTTGTGAATATCCCTCGT
131 AAGTTATTTCTTCCATCACATCCCCTCACATATCTCAATAGCTATCATTTGTGAATATCCCTCAT
* *
1545638 ATATGTATTGAGAATTCACGATTCTTTTCCAGTGATTCTTGTTGTTCATTTGAGGCATTTTAGAG
196 ATATGTATTGAGCATTCACGATACTTTTCCAGTGATTCTTGTTGTTCATTTGAGGCATTTTAGAG
1545703 AGAATAATATGGAAAG
261 AGAATAATATGGAAAG
1545719 ATGGTCTCTATATAATTTCCATGTTCAAAGTTGATAATTCCCATTGCATCAAATGGTTCATATTC
1 ATGGTCTCTATATAATTTCCATGTTCAAAGTTGATAATTCCCATTGCATCAAATGGTTCATATTC
1545784 TTTTTCCTTGGATTGATGGGTACTGATGGTAGTTCTTTGATTTTAATGTGAATGAACATACCCTA
66 TTTTTCCTTGGATTGATGGGTACTGATGGTAGTTCTTTGATTTTAATGTGAATGAACATACCCTA
1545849 AAGTTATTTCTTCCATCACATCCCCTCACATATCTCAATAGCTATCATTTGTGAATATCCCTCAT
131 AAGTTATTTCTTCCATCACATCCCCTCACATATCTCAATAGCTATCATTTGTGAATATCCCTCAT
1545914 ATATGTATTGAGCATTCACGATACTTTTCCAGTGATTCTTGTTCATTTGAGGCTTGTTGTTCATT
196 ATATGTATTGAGCATTCACGATACTTTTCCA--G-----TG---A-TT----CTTGTTGTTCATT
1545979 TGAGGCATTTTAGAGAGAATAATATGGAAAG
246 TGAGGCATTTTAGAGAGAATAATATGGAAAG
1546010 ATGGTCTCTATATAATTTCCATGTTCAAAGTTGATAATTCCCATTGCATCAAATGGTTCATATTC
1 ATGGTCTCTATATAATTTCCATGTTCAAAGTTGATAATTCCCATTGCATCAAATGGTTCATATTC
1546075 TTTTTCCTTGGATTGATGGGTACTGATGGTAGTTCTTTGATTTTAATGTGAATGAACATACCCTA
66 TTTTTCCTTGGATTGATGGGTACTGATGGTAGTTCTTTGATTTTAATGTGAATGAACATACCCTA
1546140 AAGTTATTTCTTCCATCACATCCCCTCACATATCTCAATAGCTATCATTTGTGAATATCCCTCAT
131 AAGTTATTTCTTCCATCACATCCCCTCACATATCTCAATAGCTATCATTTGTGAATATCCCTCAT
1546205 ATATGTATTGAGCATTCACGATACTTTTCCAGTGATTC---TTGTTCATTTGAGGCATTTTAGAG
196 ATATGTATTGAGCATTCACGATACTTTTCCAGTGATTCTTGTTGTTCATTTGAGGCATTTTAGAG
1546267 AGAATAATATGGAAAG
261 AGAATAATATGGAAAG
1546283 ATGGT
1 ATGGT
1546288 TACAATTAAC
Statistics
Matches: 539, Mismatches: 14, Indels: 34
0.92 0.02 0.06
Matches are distributed among these distances:
273 45 0.08
275 61 0.11
276 151 0.28
278 1 0.00
280 2 0.00
281 1 0.00
283 2 0.00
284 2 0.00
286 1 0.00
287 2 0.00
289 1 0.00
291 270 0.50
ACGTcount: A:0.27, C:0.17, G:0.16, T:0.40
Consensus pattern (276 bp):
ATGGTCTCTATATAATTTCCATGTTCAAAGTTGATAATTCCCATTGCATCAAATGGTTCATATTC
TTTTTCCTTGGATTGATGGGTACTGATGGTAGTTCTTTGATTTTAATGTGAATGAACATACCCTA
AAGTTATTTCTTCCATCACATCCCCTCACATATCTCAATAGCTATCATTTGTGAATATCCCTCAT
ATATGTATTGAGCATTCACGATACTTTTCCAGTGATTCTTGTTGTTCATTTGAGGCATTTTAGAG
AGAATAATATGGAAAG
Found at i:1554792 original size:29 final size:29
Alignment explanation
Indices: 1554741--1554798 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
1554731 GTGTTGGTCG
1554741 TAGGTCGCCATGCCTTCCGGGCGACCTAC
1 TAGGTCGCCATGCCTTCCGGGCGACCTAC
* *
1554770 TAGGTCGCCATGTCTTTCC-GGCGAGCTAC
1 TAGGTCGCCATG-CCTTCCGGGCGACCTAC
1554799 AAGAGATAGC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 21 0.81
30 5 0.19
ACGTcount: A:0.14, C:0.34, G:0.28, T:0.24
Consensus pattern (29 bp):
TAGGTCGCCATGCCTTCCGGGCGACCTAC
Found at i:1554886 original size:20 final size:20
Alignment explanation
Indices: 1554855--1555021 Score: 237
Period size: 20 Copynumber: 8.2 Consensus size: 20
1554845 GGCCATCCGA
*
1554855 CCGAGGCTATCCGAGAGCAT
1 CCGAGGCCATCCGAGAGCAT
*
1554875 CTGAGGCCATCCGAGAGCAT
1 CCGAGGCCATCCGAGAGCAT
1554895 CCGAGGCCATCCGAGAGC-T
1 CCGAGGCCATCCGAGAGCAT
1554914 CCGAGGCCATCCGAGAGCAT
1 CCGAGGCCATCCGAGAGCAT
1554934 CCGAGGCCATCCGAGAGCAT
1 CCGAGGCCATCCGAGAGCAT
1554954 CCGAGGCCATCCGAGAGCAT
1 CCGAGGCCATCCGAGAGCAT
*
1554974 TCGAGGCCATCCGAACGAGCTAT
1 CCGAGGCCATCCG-A-GAGC-AT
* * * *
1554997 GCGAGGGCATCCGAGGGCAG
1 CCGAGGCCATCCGAGAGCAT
1555017 CCGAG
1 CCGAG
1555022 CGAGCTATGC
Statistics
Matches: 134, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
19 19 0.14
20 93 0.69
21 4 0.03
22 5 0.04
23 13 0.10
ACGTcount: A:0.24, C:0.32, G:0.32, T:0.11
Consensus pattern (20 bp):
CCGAGGCCATCCGAGAGCAT
Found at i:1554932 original size:59 final size:59
Alignment explanation
Indices: 1554837--1555021 Score: 236
Period size: 59 Copynumber: 3.2 Consensus size: 59
1554827 AACATGCTGG
* *
1554837 GCATCCGAGGCCATCC--GA---CCGAGGCTATCCGAGAGCATCTGAGGCCATCCGAGA
1 GCATCCGAGGCCATCCGAGAGCTCCGAGGCCATCCGAGAGCATCCGAGGCCATCCGAGA
1554891 GCATCCGAGGCCATCCGAGAGCTCCGAGGCCATCCGAGAGCATCCGAGGCCATCCGAGA
1 GCATCCGAGGCCATCCGAGAGCTCCGAGGCCATCCGAGAGCATCCGAGGCCATCCGAGA
* * * *
1554950 GCATCCGAGGCCATCCGAGAGCATTCGAGGCCATCCGAACGAGCTATGCGAGGGCATCCGAGG
1 GCATCCGAGGCCATCCGAGAGC-TCCGAGGCCATCCG-A-GAGC-ATCCGAGGCCATCCGAGA
*
1555013 GCAGCCGAG
1 GCATCCGAG
1555022 CGAGCTATGC
Statistics
Matches: 115, Mismatches: 7, Indels: 9
0.88 0.05 0.07
Matches are distributed among these distances:
54 16 0.14
56 2 0.02
59 56 0.49
60 13 0.11
61 1 0.01
62 4 0.03
63 23 0.20
ACGTcount: A:0.24, C:0.33, G:0.32, T:0.11
Consensus pattern (59 bp):
GCATCCGAGGCCATCCGAGAGCTCCGAGGCCATCCGAGAGCATCCGAGGCCATCCGAGA
Found at i:1555013 original size:10 final size:10
Alignment explanation
Indices: 1554835--1555054 Score: 154
Period size: 10 Copynumber: 21.1 Consensus size: 10
1554825 CCAACATGCT
1554835 GGGCATCCGA
1 GGGCATCCGA
*
1554845 GGCCATCCGA
1 GGGCATCCGA
1554855 CCGAGGCTATCCGA
1 --G-GGC-ATCCGA
* *
1554869 GAGCATCTGA
1 GGGCATCCGA
*
1554879 GGCCATCCGA
1 GGGCATCCGA
*
1554889 GAGCATCCGA
1 GGGCATCCGA
*
1554899 GGCCATCCGA
1 GGGCATCCGA
*
1554909 GAGC-TCCGA
1 GGGCATCCGA
*
1554918 GGCCATCCGA
1 GGGCATCCGA
*
1554928 GAGCATCCGA
1 GGGCATCCGA
*
1554938 GGCCATCCGA
1 GGGCATCCGA
*
1554948 GAGCATCCGA
1 GGGCATCCGA
*
1554958 GGCCATCCGA
1 GGGCATCCGA
* *
1554968 GAGCATTCGA
1 GGGCATCCGA
*
1554978 GGCCATCCGAA
1 GGGCATCCG-A
* *
1554989 CGAGCTATGCGA
1 -GGGC-ATCCGA
1555001 GGGCATCCGA
1 GGGCATCCGA
*
1555011 GGGCAGCCGA
1 GGGCATCCGA
*
1555021 GCGAGCTATGCGA
1 G-G-GC-ATCCGA
*
1555034 GGGAATCCGA
1 GGGCATCCGA
*
1555044 GGGCAGCCGA
1 GGGCATCCGA
1555054 G
1 G
1555055 CGAGGATAGG
Statistics
Matches: 158, Mismatches: 41, Indels: 22
0.71 0.19 0.10
Matches are distributed among these distances:
9 7 0.04
10 118 0.75
11 8 0.05
12 8 0.05
13 11 0.07
14 6 0.04
ACGTcount: A:0.24, C:0.31, G:0.34, T:0.11
Consensus pattern (10 bp):
GGGCATCCGA
Found at i:1555026 original size:33 final size:33
Alignment explanation
Indices: 1554965--1555058 Score: 134
Period size: 33 Copynumber: 2.8 Consensus size: 33
1554955 CGAGGCCATC
* * * * *
1554965 CGAGAGCATTCGAGGCCATCCGAACGAGCTATG
1 CGAGGGCATCCGAGGGCAGCCGAGCGAGCTATG
1554998 CGAGGGCATCCGAGGGCAGCCGAGCGAGCTATG
1 CGAGGGCATCCGAGGGCAGCCGAGCGAGCTATG
*
1555031 CGAGGGAATCCGAGGGCAGCCGAGCGAG
1 CGAGGGCATCCGAGGGCAGCCGAGCGAG
1555059 GATAGGTCAC
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 55 1.00
ACGTcount: A:0.24, C:0.27, G:0.39, T:0.10
Consensus pattern (33 bp):
CGAGGGCATCCGAGGGCAGCCGAGCGAGCTATG
Found at i:1555095 original size:29 final size:29
Alignment explanation
Indices: 1555062--1555117 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
1555052 GAGCGAGGAT
* * *
1555062 AGGTCACCCGGAGTGCATGGCGACCTACA
1 AGGTCACCCGAAGGGCATGACGACCTACA
*
1555091 AGGTCGCCCGAAGGGCATGACGACCTA
1 AGGTCACCCGAAGGGCATGACGACCTA
1555118 TGTGTCGGGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.25, C:0.30, G:0.32, T:0.12
Consensus pattern (29 bp):
AGGTCACCCGAAGGGCATGACGACCTACA
Found at i:1558830 original size:48 final size:48
Alignment explanation
Indices: 1558777--1558877 Score: 175
Period size: 48 Copynumber: 2.1 Consensus size: 48
1558767 ACCTTTGCGA
* **
1558777 GATGGTTTTGGAGACGGTTGTGAGTTTGCCGGTGGGGTTTGTGGAGTT
1 GATGGTTTTGGAGACGGTTGTGAATTTGCCGGCAGGGTTTGTGGAGTT
1558825 GATGGTTTTGGAGACGGTTGTGAATTTGCCGGCAGGGTTTGTGGAGTT
1 GATGGTTTTGGAGACGGTTGTGAATTTGCCGGCAGGGTTTGTGGAGTT
1558873 GATGG
1 GATGG
1558878 GGTCGATGGA
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.13, C:0.07, G:0.45, T:0.36
Consensus pattern (48 bp):
GATGGTTTTGGAGACGGTTGTGAATTTGCCGGCAGGGTTTGTGGAGTT
Found at i:1559137 original size:2 final size:2
Alignment explanation
Indices: 1559130--1559156 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
1559120 TGAGGCAGAA
1559130 AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG A
1559157 TCTGCCTTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:1572815 original size:31 final size:31
Alignment explanation
Indices: 1572780--1572848 Score: 113
Period size: 30 Copynumber: 2.3 Consensus size: 31
1572770 TTTGTTGGAC
**
1572780 CCCTTTTGGGGAAAAAAGGAAATTTTTATGG
1 CCCTTTTGGAAAAAAAAGGAAATTTTTATGG
1572811 CCCTTTT-GAAAAAAAAGGAAATTTTTATGG
1 CCCTTTTGGAAAAAAAAGGAAATTTTTATGG
1572841 CCCTTTTG
1 CCCTTTTG
1572849 TCCCAAGTTC
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
30 28 0.80
31 7 0.20
ACGTcount: A:0.32, C:0.13, G:0.20, T:0.35
Consensus pattern (31 bp):
CCCTTTTGGAAAAAAAAGGAAATTTTTATGG
Found at i:1572835 original size:29 final size:30
Alignment explanation
Indices: 1572791--1572848 Score: 116
Period size: 30 Copynumber: 1.9 Consensus size: 30
1572781 CCTTTTGGGG
1572791 AAAAAAGGAAATTTTTATGGCCCTTTTGAA
1 AAAAAAGGAAATTTTTATGGCCCTTTTGAA
1572821 AAAAAAGGAAATTTTTATGGCCCTTTTG
1 AAAAAAGGAAATTTTTATGGCCCTTTTG
1572849 TCCCAAGTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.34
Consensus pattern (30 bp):
AAAAAAGGAAATTTTTATGGCCCTTTTGAA
Found at i:1573106 original size:43 final size:43
Alignment explanation
Indices: 1573058--1573146 Score: 169
Period size: 43 Copynumber: 2.1 Consensus size: 43
1573048 TTCCCTAATT
*
1573058 TTTAATTGATTTGATGTTCAAGCCTTATTTGCCTTGCTTCATA
1 TTTAATTGATTTGATATTCAAGCCTTATTTGCCTTGCTTCATA
1573101 TTTAATTGATTTGATATTCAAGCCTTATTTGCCTTGCTTCATA
1 TTTAATTGATTTGATATTCAAGCCTTATTTGCCTTGCTTCATA
1573144 TTT
1 TTT
1573147 TCTCTACGAT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.21, C:0.16, G:0.12, T:0.51
Consensus pattern (43 bp):
TTTAATTGATTTGATATTCAAGCCTTATTTGCCTTGCTTCATA
Found at i:1590836 original size:17 final size:18
Alignment explanation
Indices: 1590796--1590836 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
1590786 ATATTACTTT
*
1590796 TAAAATTTTTATTTATAA
1 TAAAATTCTTATTTATAA
*
1590814 T-TAATTCTTATTT-TAA
1 TAAAATTCTTATTTATAA
1590830 TAAAATT
1 TAAAATT
1590837 ATAAATTTAC
Statistics
Matches: 19, Mismatches: 3, Indels: 3
0.76 0.12 0.12
Matches are distributed among these distances:
16 4 0.21
17 14 0.74
18 1 0.05
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.56
Consensus pattern (18 bp):
TAAAATTCTTATTTATAA
Found at i:1602844 original size:16 final size:17
Alignment explanation
Indices: 1602808--1602853 Score: 67
Period size: 16 Copynumber: 2.7 Consensus size: 17
1602798 TTTATGAGAA
*
1602808 AATTGGAATCTGTGAAGG
1 AATTGAAATCTGT-AAGG
1602826 AATTGAAATCTGT-AGG
1 AATTGAAATCTGTAAGG
1602842 AATTGAAATCTG
1 AATTGAAATCTG
1602854 AATCTGAAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
16 15 0.56
18 12 0.44
ACGTcount: A:0.37, C:0.07, G:0.26, T:0.30
Consensus pattern (17 bp):
AATTGAAATCTGTAAGG
Found at i:1606478 original size:6 final size:6
Alignment explanation
Indices: 1606469--1606500 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
1606459 GGAATCAGAT
1606469 GAAGTG GAAGTG GAAGTG GAAGTG GAAGTG GA
1 GAAGTG GAAGTG GAAGTG GAAGTG GAAGTG GA
1606501 GCTAAAGAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.50, T:0.16
Consensus pattern (6 bp):
GAAGTG
Found at i:1607948 original size:60 final size:58
Alignment explanation
Indices: 1607852--1608027 Score: 192
Period size: 60 Copynumber: 2.9 Consensus size: 58
1607842 ATGTCCCTAG
1607852 ACTATGATCATCATTCTAAATTGATACCTAAACTTTTAAATATTCTATTTTCATCCTCAA
1 ACTATGAT-ATCATTCTAAATTGAT-CCTAAACTTTTAAATATTCTATTTTCATCCTCAA
* * * * * *
1607912 ACTATGATATTCATTCTAAATTGGTCCTTGAGCTTTTGAATATTCTAATTTCATCCTCAG
1 ACTATGATA-TCATTCTAAATTGATCC-TAAACTTTTAAATATTCTATTTTCATCCTCAA
* * * *
1607972 ACTACGACCATCATTCTAAATT-ACTCCCCAAACTTTTAAATATTCCATTTTCATCC
1 ACTATGA-TATCATTCTAAATTGA-T-CCTAAACTTTTAAATATTCTATTTTCATCC
1608028 AAAGTTCATC
Statistics
Matches: 96, Mismatches: 15, Indels: 10
0.79 0.12 0.08
Matches are distributed among these distances:
59 3 0.03
60 90 0.94
61 3 0.03
ACGTcount: A:0.31, C:0.23, G:0.06, T:0.40
Consensus pattern (58 bp):
ACTATGATATCATTCTAAATTGATCCTAAACTTTTAAATATTCTATTTTCATCCTCAA
Found at i:1608442 original size:19 final size:20
Alignment explanation
Indices: 1608427--1608494 Score: 72
Period size: 19 Copynumber: 3.5 Consensus size: 20
1608417 TTTTTTAATT
1608427 TAATTATAAATATTT-ATAA
1 TAATTATAAATATTTAATAA
1608446 TAATTATAAATATTT-ATAA
1 TAATTATAAATATTTAATAA
* *
1608465 T-ATTATGATATTATTTAATTA
1 TAATTAT-A-AATATTTAATAA
1608486 TAATT-TAAA
1 TAATTATAAA
1608495 CGATTTTCTA
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
18 5 0.12
19 22 0.52
20 7 0.17
21 5 0.12
22 3 0.07
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (20 bp):
TAATTATAAATATTTAATAA
Found at i:1608445 original size:10 final size:9
Alignment explanation
Indices: 1608430--1608468 Score: 51
Period size: 9 Copynumber: 4.1 Consensus size: 9
1608420 TTTAATTTAA
1608430 TTATAAATAT
1 TTAT-AATAT
*
1608440 TTATAATAA
1 TTATAATAT
1608449 TTATAAATAT
1 TTAT-AATAT
1608459 TTATAATAT
1 TTATAATAT
1608468 T
1 T
1608469 ATGATATTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
9 14 0.54
10 12 0.46
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (9 bp):
TTATAATAT
Found at i:1610462 original size:2 final size:2
Alignment explanation
Indices: 1610455--1610490 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
1610445 AACTTCAAGA
1610455 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1610491 GCAATAAGAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1610681 original size:35 final size:35
Alignment explanation
Indices: 1610614--1610685 Score: 117
Period size: 35 Copynumber: 2.1 Consensus size: 35
1610604 TTGTGTTTTA
* *
1610614 TTGGTTTAGCAGGAATGTAAGATTACCGTGTTTGG
1 TTGGTTTAGCAGGAATGTAAGATTAACATGTTTGG
*
1610649 TTGGTTTAGCAGGAATGTAAGATTAATATGTTTGG
1 TTGGTTTAGCAGGAATGTAAGATTAACATGTTTGG
1610684 TT
1 TT
1610686 AAAGGAATAA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.25, C:0.06, G:0.29, T:0.40
Consensus pattern (35 bp):
TTGGTTTAGCAGGAATGTAAGATTAACATGTTTGG
Found at i:1611985 original size:16 final size:16
Alignment explanation
Indices: 1611964--1612000 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
1611954 CATTAATTTA
*
1611964 AATTTAAGCATTATAT
1 AATTTAAGCATTAAAT
*
1611980 AATTTAATCATTAAAT
1 AATTTAAGCATTAAAT
1611996 AATTT
1 AATTT
1612001 TTATAATTCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.46, C:0.05, G:0.03, T:0.46
Consensus pattern (16 bp):
AATTTAAGCATTAAAT
Found at i:1617175 original size:21 final size:20
Alignment explanation
Indices: 1617133--1617175 Score: 50
Period size: 21 Copynumber: 2.1 Consensus size: 20
1617123 TGATCTTAAT
* **
1617133 TTAAATTTAATTAAAATTTA
1 TTAAATTAAATTAAAAAATA
1617153 TTAAATTGAAATTAAAAAATA
1 TTAAATT-AAATTAAAAAATA
1617174 TT
1 TT
1617176 TGTAATCAGG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (20 bp):
TTAAATTAAATTAAAAAATA
Found at i:1619949 original size:15 final size:15
Alignment explanation
Indices: 1619926--1619956 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1619916 GCTTTTTTTC
*
1619926 TTGTGTCATTCATTA
1 TTGTCTCATTCATTA
1619941 TTGTCTCATTCATTA
1 TTGTCTCATTCATTA
1619956 T
1 T
1619957 AAAAGCTCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.16, G:0.10, T:0.55
Consensus pattern (15 bp):
TTGTCTCATTCATTA
Found at i:1624757 original size:84 final size:83
Alignment explanation
Indices: 1624587--1624748 Score: 308
Period size: 83 Copynumber: 2.0 Consensus size: 83
1624577 TGTGAGTTTA
1624587 TGAACACATGAAATAATAAAGTTTGTTCTTTATTTCCTCTGAAACCCAAAGTTGTTCTTAATTTC
1 TGAACACATGAAATAATAAAGTTTGTTCTTTATTTCCTCTGAAACCCAAAGTTGTTCTTAATTTC
1624652 CTCTTTTCTTTAGGGATG
66 CTCTTTTCTTTAGGGATG
1624670 TGAACACATGAAATAATAAAGTTTGTTTCTTTATTTCCTCTGAAACCCAAAGTTGTT-TTAATTT
1 TGAACACATGAAATAATAAAGTTTG-TTCTTTATTTCCTCTGAAACCCAAAGTTGTTCTTAATTT
1624734 CCTCTTTTCTTTAGG
65 CCTCTTTTCTTTAGG
1624749 ATGAGTGAAG
Statistics
Matches: 78, Mismatches: 0, Indels: 2
0.98 0.00 0.03
Matches are distributed among these distances:
83 47 0.60
84 31 0.40
ACGTcount: A:0.28, C:0.17, G:0.12, T:0.43
Consensus pattern (83 bp):
TGAACACATGAAATAATAAAGTTTGTTCTTTATTTCCTCTGAAACCCAAAGTTGTTCTTAATTTC
CTCTTTTCTTTAGGGATG
Found at i:1628018 original size:15 final size:15
Alignment explanation
Indices: 1627976--1628010 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
1627966 ATCCAGTCGG
**
1627976 TTTTGATCAGTTTTT
1 TTTTGATCTTTTTTT
1627991 TTTTGATCTTTTTTT
1 TTTTGATCTTTTTTT
1628006 TTTTG
1 TTTTG
1628011 TTTGTTTTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.09, C:0.06, G:0.11, T:0.74
Consensus pattern (15 bp):
TTTTGATCTTTTTTT
Found at i:1641569 original size:8 final size:8
Alignment explanation
Indices: 1641556--1641597 Score: 50
Period size: 8 Copynumber: 5.0 Consensus size: 8
1641546 CCCAGTCCCT
1641556 CCTCTCTC
1 CCTCTCTC
1641564 CCTCTCTC
1 CCTCTCTC
1641572 CCTCTC-C
1 CCTCTCTC
1641579 CTCTCCTTCTC
1 C-CT-C-TCTC
1641590 CCTCTCTC
1 CCTCTCTC
1641598 AAATAATTGG
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
7 2 0.07
8 20 0.67
9 2 0.07
10 4 0.13
11 2 0.07
ACGTcount: A:0.00, C:0.62, G:0.00, T:0.38
Consensus pattern (8 bp):
CCTCTCTC
Found at i:1650493 original size:19 final size:20
Alignment explanation
Indices: 1650469--1650521 Score: 65
Period size: 19 Copynumber: 2.6 Consensus size: 20
1650459 TATAATAAAA
1650469 TGTTATTTAAAAAATT-ATT
1 TGTTATTTAAAAAATTAATT
*
1650488 TGTTA-TTAGAAATATTAATT
1 TGTTATTTA-AAAAATTAATT
1650508 TCGTTATTTAAAAA
1 T-GTTATTTAAAAA
1650522 TCAGTAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
18 3 0.11
19 11 0.39
20 4 0.14
21 7 0.25
22 3 0.11
ACGTcount: A:0.42, C:0.02, G:0.08, T:0.49
Consensus pattern (20 bp):
TGTTATTTAAAAAATTAATT
Found at i:1650584 original size:45 final size:44
Alignment explanation
Indices: 1650535--1650631 Score: 142
Period size: 45 Copynumber: 2.2 Consensus size: 44
1650525 GTAAAAAAAA
*
1650535 TTTAAATAACGTTTAATATTAATATATT-TAATAAAAAAATAATAT
1 TTTAAATAACATTTAATATTAATAT-TTCTAAT-AAAAAATAATAT
* *
1650580 TTTAAGTAACATTTAATATTAATATTTCTAATAAAAATTAATAT
1 TTTAAATAACATTTAATATTAATATTTCTAATAAAAAATAATAT
1650624 TTTAAATA
1 TTTAAATA
1650632 GTACTTTACC
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
44 20 0.43
45 27 0.57
ACGTcount: A:0.51, C:0.03, G:0.02, T:0.44
Consensus pattern (44 bp):
TTTAAATAACATTTAATATTAATATTTCTAATAAAAAATAATAT
Found at i:1650606 original size:25 final size:24
Alignment explanation
Indices: 1650534--1650624 Score: 75
Period size: 25 Copynumber: 3.9 Consensus size: 24
1650524 AGTAAAAAAA
* *
1650534 ATTTAAATAACGTTTAATATTAAT
1 ATTTTAATAACATTTAATATTAAT
*
1650558 ATATTTAATAA-A---AA-AATAAT
1 AT-TTTAATAACATTTAATATTAAT
1650578 ATTTTAAGTAACATTTAATATTAAT
1 ATTTTAA-TAACATTTAATATTAAT
* *
1650603 ATTTCTAATAAAAATTAATATT
1 ATTT-TAATAACATTTAATATT
1650625 TTAAATAGTA
Statistics
Matches: 53, Mismatches: 6, Indels: 15
0.72 0.08 0.20
Matches are distributed among these distances:
19 5 0.09
20 10 0.19
21 3 0.06
24 4 0.08
25 28 0.53
26 3 0.06
ACGTcount: A:0.51, C:0.03, G:0.02, T:0.44
Consensus pattern (24 bp):
ATTTTAATAACATTTAATATTAAT
Found at i:1651063 original size:15 final size:15
Alignment explanation
Indices: 1651043--1651090 Score: 69
Period size: 15 Copynumber: 3.2 Consensus size: 15
1651033 TTTCCTTATT
1651043 CTTCTCATTCCCCTC
1 CTTCTCATTCCCCTC
* *
1651058 CTTCTCCTCCCCCTC
1 CTTCTCATTCCCCTC
*
1651073 CTTCTCATTCTCCTC
1 CTTCTCATTCCCCTC
1651088 CTT
1 CTT
1651091 TTTCTTCTTT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.04, C:0.54, G:0.00, T:0.42
Consensus pattern (15 bp):
CTTCTCATTCCCCTC
Found at i:1665066 original size:17 final size:16
Alignment explanation
Indices: 1665046--1665078 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
1665036 TATTTTTATC
1665046 AATAATAAATTTTAAAT
1 AATAATAAA-TTTAAAT
1665063 AATAATAAATTTAAAT
1 AATAATAAATTTAAAT
1665079 TGATGGAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
AATAATAAATTTAAAT
Found at i:1673377 original size:2 final size:2
Alignment explanation
Indices: 1673370--1673399 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
1673360 CCGACCCGAT
1673370 TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1673400 TTTATATTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1673450 original size:12 final size:12
Alignment explanation
Indices: 1673433--1673457 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1673423 ATAAAATATT
1673433 TTCGGGTTTGGG
1 TTCGGGTTTGGG
1673445 TTCGGGTTTGGG
1 TTCGGGTTTGGG
1673457 T
1 T
1673458 ATAATATTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.08, G:0.48, T:0.44
Consensus pattern (12 bp):
TTCGGGTTTGGG
Found at i:1675868 original size:3 final size:3
Alignment explanation
Indices: 1675860--1675895 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
1675850 TATCCTAGTA
1675860 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1675896 TTGCCACTTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:1698629 original size:21 final size:20
Alignment explanation
Indices: 1698605--1698662 Score: 55
Period size: 21 Copynumber: 2.8 Consensus size: 20
1698595 TTAGCTTTAC
1698605 ATTCTATTTTTATTTAATTTT
1 ATTC-ATTTTTATTTAATTTT
* *
1698626 ATTCACTTTTAATTCT-TTTTT
1 ATTCA-TTTTTATT-TAATTTT
1698647 ATTGCATTTTTATTTA
1 ATT-CATTTTTATTTA
1698663 TTTAAAAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
20 2 0.07
21 25 0.83
22 3 0.10
ACGTcount: A:0.22, C:0.09, G:0.02, T:0.67
Consensus pattern (20 bp):
ATTCATTTTTATTTAATTTT
Found at i:1698635 original size:10 final size:10
Alignment explanation
Indices: 1698605--1698665 Score: 50
Period size: 10 Copynumber: 5.8 Consensus size: 10
1698595 TTAGCTTTAC
1698605 ATTCTATTTTT
1 ATTC-ATTTTT
* *
1698616 ATTTAATTTT
1 ATTCATTTTT
*
1698626 ATTCACTTTTA
1 ATTCA-TTTTT
*
1698637 ATTCTTTTTT
1 ATTCATTTTT
1698647 ATTGCATTTTT
1 ATT-CATTTTT
*
1698658 ATTTATTT
1 ATTCATTT
1698666 AAAAAAAAGT
Statistics
Matches: 39, Mismatches: 9, Indels: 5
0.74 0.17 0.09
Matches are distributed among these distances:
10 20 0.51
11 19 0.49
ACGTcount: A:0.21, C:0.08, G:0.02, T:0.69
Consensus pattern (10 bp):
ATTCATTTTT
Found at i:1703739 original size:21 final size:21
Alignment explanation
Indices: 1703713--1703806 Score: 120
Period size: 21 Copynumber: 4.5 Consensus size: 21
1703703 TATGCCATCT
* *
1703713 CCGCAGGGTTACATTCCGAGC
1 CCGCAGGGTTACATGCCTAGC
*
1703734 CCGCAGGGTTACATTCCTAGC
1 CCGCAGGGTTACATGCCTAGC
1703755 CCGCCA-GGTTACATGCCTAGC
1 CCG-CAGGGTTACATGCCTAGC
*
1703776 CCGCCA-GGTTACATGCCTAAC
1 CCG-CAGGGTTACATGCCTAGC
1703797 CCGCAGGGTT
1 CCGCAGGGTT
1703807 TTACCATATG
Statistics
Matches: 68, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
20 2 0.03
21 64 0.94
22 2 0.03
ACGTcount: A:0.19, C:0.35, G:0.26, T:0.20
Consensus pattern (21 bp):
CCGCAGGGTTACATGCCTAGC
Found at i:1704392 original size:34 final size:34
Alignment explanation
Indices: 1704319--1704385 Score: 116
Period size: 34 Copynumber: 2.0 Consensus size: 34
1704309 GATAAATGTT
1704319 TTTAAAATACAAATTATACTATTCGAAATTTAAA
1 TTTAAAATACAAATTATACTATTCGAAATTTAAA
* *
1704353 TTTAAAATATAAATTATAGTATTCGAAATTTAA
1 TTTAAAATACAAATTATACTATTCGAAATTTAA
1704386 CATTAAATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.49, C:0.06, G:0.04, T:0.40
Consensus pattern (34 bp):
TTTAAAATACAAATTATACTATTCGAAATTTAAA
Found at i:1704887 original size:20 final size:21
Alignment explanation
Indices: 1704848--1704890 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
1704838 CTGACGAAAT
1704848 AATGGAAGGCGCGCCCCCGGG
1 AATGGAAGGCGCGCCCCCGGG
1704869 AATGGAAGGCGCG-CCCCGGG
1 AATGGAAGGCGCGCCCCCGGG
1704889 AA
1 AA
1704891 CGCGCCTTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 9 0.41
21 13 0.59
ACGTcount: A:0.23, C:0.30, G:0.42, T:0.05
Consensus pattern (21 bp):
AATGGAAGGCGCGCCCCCGGG
Found at i:1705065 original size:128 final size:127
Alignment explanation
Indices: 1704869--1705295 Score: 802
Period size: 128 Copynumber: 3.4 Consensus size: 127
1704859 CGCCCCCGGG
*
1704869 AATGGAAGGCGCGCCCCGGGAACGCGCCTTCATGTGAATAGTG-AATAATAGGTACTGATATATC
1 AATGGAAGGCGCGCCCCGGGAACGCGCCTTCATATGAATAGTGAAATAATAGGTACTGATATATC
1704933 TAGTGTCCCCGAGGGACATGAATGACATAATAGGGCAATGATAACATATTCTCTGACGAAAT
66 TAGTGTCCCCGAGGGACATGAATGACATAATAGGGCAATGATAACATATTCTCTGACGAAAT
1704995 AATGGAAGGCGCGTCCCCGGGAACGCGCCTTCATATGAATAGTGAAATAATAGGTACTGATATAT
1 AATGGAAGGCGCG-CCCCGGGAACGCGCCTTCATATGAATAGTGAAATAATAGGTACTGATATAT
*
1705060 CTAGTGTCCCCGAGGGACATGAGTGACATAATAGGGCAATGATAACATATTCTCTGACGAAAT
65 CTAGTGTCCCCGAGGGACATGAATGACATAATAGGGCAATGATAACATATTCTCTGACGAAAT
*
1705123 AATGGAAGGCGCGCCCCCGGGAACGCGCCTTCATGTGAATAGTGAAATAATAGGTACTGATATAT
1 AATGGAAGGCGCG-CCCCGGGAACGCGCCTTCATATGAATAGTGAAATAATAGGTACTGATATAT
1705188 CTAGTGTCCCCGAGGGACATGAATGACATAATAGGGCAATGATAACATATTCTCTGACGAAAT
65 CTAGTGTCCCCGAGGGACATGAATGACATAATAGGGCAATGATAACATATTCTCTGACGAAAT
1705251 AATGGAAGGCGCGCCCCGGGAACGCGCCTTCATATGAATAGTGAA
1 AATGGAAGGCGCGCCCCGGGAACGCGCCTTCATATGAATAGTGAA
1705296 CCGATTATAG
Statistics
Matches: 293, Mismatches: 6, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
126 13 0.04
127 60 0.20
128 220 0.75
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.22
Consensus pattern (127 bp):
AATGGAAGGCGCGCCCCGGGAACGCGCCTTCATATGAATAGTGAAATAATAGGTACTGATATATC
TAGTGTCCCCGAGGGACATGAATGACATAATAGGGCAATGATAACATATTCTCTGACGAAAT
Found at i:1705375 original size:8 final size:8
Alignment explanation
Indices: 1705362--1705400 Score: 53
Period size: 8 Copynumber: 5.0 Consensus size: 8
1705352 TCACAATCTT
1705362 TCAAATTC
1 TCAAATTC
1705370 TCAAATTC
1 TCAAATTC
* *
1705378 CCAAACTC
1 TCAAATTC
1705386 T-AAATTC
1 TCAAATTC
1705393 TCAAATTC
1 TCAAATTC
1705401 CCTGAAAATG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
7 6 0.23
8 20 0.77
ACGTcount: A:0.38, C:0.28, G:0.00, T:0.33
Consensus pattern (8 bp):
TCAAATTC
Found at i:1713383 original size:12 final size:12
Alignment explanation
Indices: 1713353--1713388 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
1713343 GTAATTTATT
1713353 AATTATTAA-TA
1 AATTATTAATTA
*
1713364 AATCATTAATTA
1 AATTATTAATTA
1713376 AATTATTAATTA
1 AATTATTAATTA
1713388 A
1 A
1713389 TTGTAAAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 8 0.36
12 14 0.64
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (12 bp):
AATTATTAATTA
Found at i:1713390 original size:11 final size:11
Alignment explanation
Indices: 1713329--1713390 Score: 61
Period size: 11 Copynumber: 5.5 Consensus size: 11
1713319 CTTTAATAAT
1713329 TTAATTATTAA
1 TTAATTATTAA
* * * *
1713340 ATAGTAATTTA
1 TTAATTATTAA
1713351 TTAATTATTAA
1 TTAATTATTAA
* *
1713362 TAAATCATTAA
1 TTAATTATTAA
1713373 TTAAATTATTAA
1 TT-AATTATTAA
1713385 TTAATT
1 TTAATT
1713391 GTAAAATATG
Statistics
Matches: 38, Mismatches: 12, Indels: 2
0.73 0.23 0.04
Matches are distributed among these distances:
11 28 0.74
12 10 0.26
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (11 bp):
TTAATTATTAA
Found at i:1714883 original size:130 final size:129
Alignment explanation
Indices: 1714625--1714883 Score: 493
Period size: 128 Copynumber: 2.0 Consensus size: 129
1714615 ATAGAATAAT
*
1714625 CACCAGTTGTAATGGTTGAAGTGCCTTTAATTCATCCACTTTCATTAATATTTTCAGTATATTCT
1 CACCAGTTGTAATGGTTGAAGTGCCTTTAATTCATCCACTTTCATTAATATTTTCAG-ATAGTCT
1714690 CTTTCCTTATTATTCTCTAATATACAAAACTAAGTCTAAAACAACTACAGTGACTCCTTCACACA
65 CTTTCCTTATTATTCTCTAATATACAAAACTAAGTCTAAAACAACTACAGTGACTCCTTCACACA
1714755 CACCAGTTGTAATGGTTGAAGTGCCTTTAATTCATCCACTTTCATTAATATTTTCAG-TAGTCTC
1 CACCAGTTGTAATGGTTGAAGTGCCTTTAATTCATCCACTTTCATTAATATTTTCAGATAGTCTC
1714819 TTTCCTTATTATTCTCTAATATACAAAACTAAGTCTAAAACAACTACAGTGACTCCTTCACACA
66 TTTCCTTATTATTCTCTAATATACAAAACTAAGTCTAAAACAACTACAGTGACTCCTTCACACA
1714883 C
1 C
1714884 TCCGGCCATT
Statistics
Matches: 128, Mismatches: 1, Indels: 2
0.98 0.01 0.02
Matches are distributed among these distances:
128 71 0.55
130 57 0.45
ACGTcount: A:0.31, C:0.23, G:0.09, T:0.37
Consensus pattern (129 bp):
CACCAGTTGTAATGGTTGAAGTGCCTTTAATTCATCCACTTTCATTAATATTTTCAGATAGTCTC
TTTCCTTATTATTCTCTAATATACAAAACTAAGTCTAAAACAACTACAGTGACTCCTTCACACA
Found at i:1735772 original size:17 final size:17
Alignment explanation
Indices: 1735752--1735786 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
1735742 TATTATAATT
*
1735752 TTATGTGGTAAAAAATA
1 TTATATGGTAAAAAATA
*
1735769 TTATATTGTAAAAAATA
1 TTATATGGTAAAAAATA
1735786 T
1 T
1735787 AAAAAAATTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.49, C:0.00, G:0.11, T:0.40
Consensus pattern (17 bp):
TTATATGGTAAAAAATA
Found at i:1746528 original size:12 final size:12
Alignment explanation
Indices: 1746495--1746528 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
1746485 TCCAGATCCG
1746495 ACCACGACCATT
1 ACCACGACCATT
**
1746507 ACCATTACCATT
1 ACCACGACCATT
1746519 ACCACGACCA
1 ACCACGACCA
1746529 CGACCCCGAC
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.35, C:0.41, G:0.06, T:0.18
Consensus pattern (12 bp):
ACCACGACCATT
Found at i:1747090 original size:12 final size:12
Alignment explanation
Indices: 1747064--1747108 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 12
1747054 CTCGGGTCGG
**
1747064 GGTCGTGGTCGT
1 GGTCGTGGTAAT
1747076 GGTCGTGGTAAT
1 GGTCGTGGTAAT
**
1747088 GGTAATGGTAAT
1 GGTCGTGGTAAT
1747100 GGTCGTGGT
1 GGTCGTGGT
1747109 CGGATCTGGA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.13, C:0.09, G:0.44, T:0.33
Consensus pattern (12 bp):
GGTCGTGGTAAT
Found at i:1755711 original size:3 final size:3
Alignment explanation
Indices: 1755703--1755736 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
1755693 CTCACCATCG
*
1755703 ATT ATT ATT AAT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1755737 CATCCGTGCA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:1758472 original size:6 final size:6
Alignment explanation
Indices: 1758456--1758645 Score: 213
Period size: 6 Copynumber: 30.7 Consensus size: 6
1758446 TTGCGAAAAT
*
1758456 GACCAAC GACCAC GACCAC GACCAC GACCAC GACCAC GACCAC GACCGC
1 GACC-AC GACCAC GACCAC GACCAC GACCAC GACCAC GACCAC GACCAC
* * * * * * *
1758505 G-CGGAC GTGTCGAA GA-CAC GTATTACCAC TACCAC TACCAC TACCAC
1 GAC-CAC --GACCAC GACCAC G----ACCAC GACCAC GACCAC GACCAC
*
1758552 TACCAC GACCAC GACCAC GACCAC GACCAC GACCAC GACCAC GACCAC
1 GACCAC GACCAC GACCAC GACCAC GACCAC GACCAC GACCAC GACCAC
1758600 GACCAC GACCAC GACCAC GACCAC GACCAC GACCAC GACCAC GACC
1 GACCAC GACCAC GACCAC GACCAC GACCAC GACCAC GACCAC GACC
1758646 CGAGACGAGA
Statistics
Matches: 165, Mismatches: 9, Indels: 19
0.85 0.05 0.10
Matches are distributed among these distances:
5 3 0.02
6 150 0.91
7 4 0.02
8 3 0.02
9 2 0.01
10 3 0.02
ACGTcount: A:0.32, C:0.46, G:0.17, T:0.05
Consensus pattern (6 bp):
GACCAC
Found at i:1759157 original size:6 final size:6
Alignment explanation
Indices: 1759146--1759256 Score: 222
Period size: 6 Copynumber: 18.5 Consensus size: 6
1759136 TCTCGTCTCG
1759146 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT
1 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT
1759194 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT
1 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT
1759242 GGTCGT GGTCGT GGT
1 GGTCGT GGTCGT GGT
1759257 AATACGTGTC
Statistics
Matches: 105, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 105 1.00
ACGTcount: A:0.00, C:0.16, G:0.50, T:0.33
Consensus pattern (6 bp):
GGTCGT
Found at i:1759384 original size:20 final size:20
Alignment explanation
Indices: 1759359--1759578 Score: 281
Period size: 20 Copynumber: 10.8 Consensus size: 20
1759349 CTCATTTTCT
1759359 GAATCGCGTTGCGATTCTTG
1 GAATCGCGTTGCGATTCTTG
*
1759379 GAATCGCGTTGCGATT-TTCT
1 GAATCGCGTTGCGATTCTT-G
1759399 GAATCGCGTTGCGATTCTTG
1 GAATCGCGTTGCGATTCTTG
1759419 GAATCGCGTTGCGATTTTCTT-
1 GAATCGCGTTGCGA--TTCTTG
1759440 -AATCGCGTTGCGATTCTTG
1 GAATCGCGTTGCGATTCTTG
1759459 GAATCGCGTTGCGATTTTCTT-
1 GAATCGCGTTGCGA--TTCTTG
1759480 -AATCGCGTTGCGATTCTTG
1 GAATCGCGTTGCGATTCTTG
1759499 GAATCGCGTTGCGATTCTTG
1 GAATCGCGTTGCGATTCTTG
1759519 GAAGATCGCGTTGCGATTCTCT-
1 G-A-ATCGCGTTGCGATTCT-TG
* *
1759541 TAATCGCATTGCGATTCTTG
1 GAATCGCGTTGCGATTCTTG
1759561 GAATATCGCGTTGCGATT
1 G-A-ATCGCGTTGCGATT
1759579 TTCTTTTGAC
Statistics
Matches: 178, Mismatches: 6, Indels: 30
0.83 0.03 0.14
Matches are distributed among these distances:
18 10 0.06
19 3 0.02
20 120 0.67
21 5 0.03
22 39 0.22
23 1 0.01
ACGTcount: A:0.16, C:0.20, G:0.26, T:0.37
Consensus pattern (20 bp):
GAATCGCGTTGCGATTCTTG
Found at i:1759407 original size:40 final size:40
Alignment explanation
Indices: 1759352--1759578 Score: 316
Period size: 40 Copynumber: 5.6 Consensus size: 40
1759342 GAATTTACTC
1759352 ATTTTCTGAATCGCGTTGCGATTCTTGGAATCGCGTTGCG
1 ATTTTCTGAATCGCGTTGCGATTCTTGGAATCGCGTTGCG
1759392 ATTTTCTGAATCGCGTTGCGATTCTTGGAATCGCGTTGCG
1 ATTTTCTGAATCGCGTTGCGATTCTTGGAATCGCGTTGCG
*
1759432 ATTTTCTTAATCGCGTTGCGATTCTTGGAATCGCGTTGCG
1 ATTTTCTGAATCGCGTTGCGATTCTTGGAATCGCGTTGCG
*
1759472 ATTTTCTTAATCGCGTTGCGATTCTTGGAATCGCGTTGCG
1 ATTTTCTGAATCGCGTTGCGATTCTTGGAATCGCGTTGCG
* * *
1759512 ATTCTT-GGAAGATCGCGTTGCGATTCTCT-TAATCGCATTGCG
1 ATT-TTCTG-A-ATCGCGTTGCGATTCT-TGGAATCGCGTTGCG
*
1759554 ATTCTT-GGAATATCGCGTTGCGATT
1 ATT-TTCTG-A-ATCGCGTTGCGATT
1759579 TTCTTTTGAC
Statistics
Matches: 177, Mismatches: 6, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
40 122 0.69
41 3 0.02
42 51 0.29
43 1 0.01
ACGTcount: A:0.16, C:0.20, G:0.26, T:0.38
Consensus pattern (40 bp):
ATTTTCTGAATCGCGTTGCGATTCTTGGAATCGCGTTGCG
Found at i:1759615 original size:62 final size:64
Alignment explanation
Indices: 1759352--1759640 Score: 290
Period size: 60 Copynumber: 4.7 Consensus size: 64
1759342 GAATTTACTC
*
1759352 ATTTTCTGAATCGCGTTGCGATTCTTGG-AATCGCGTTGCGATTTTC-TG-A-ATCGCGTTGCG
1 ATTTTCTTAATCGCGTTGCGATTCTTGGAAATCGCGTTGCGATTTTCTTGAAGATCGCGTTGCG
*** *
1759412 A--TTCTTGGAATCGCGTTGCGATT-TTCTTAATCGCGTTGCGA--TTCTTGGA-ATCGCGTTGC
1 ATTTTCTT--AATCGCGTTGCGATTCTTGGAAATCGCGTTGCGATTTTCTTGAAGATCGCGTTGC
1759471 G
64 G
1759472 ATTTTCTTAATCGCGTTGCGATTCTTGG-AATCGCGTTGCGA--TTCTTGGAAGATCGCGTTGCG
1 ATTTTCTTAATCGCGTTGCGATTCTTGGAAATCGCGTTGCGATTTTCTT-GAAGATCGCGTTGCG
* * **
1759534 ATTCTCTTAATCGCATTGCGATTCTTGGAATATCGCGTTGCGATTTTCTT-TTGA-C-CGTTGCG
1 ATTTTCTTAATCGCGTTGCGATTCTTGGAA-ATCGCGTTGCGATTTTCTTGAAGATCGCGTTGCG
* * **
1759596 ATTTTCTT-TTCAACGTTGCGATT-TTCTAAATCGCGTTGCGATTTT
1 ATTTTCTTAATC-GCGTTGCGATTCTTGGAAATCGCGTTGCGATTTT
1759641 TATTTCGCGT
Statistics
Matches: 198, Mismatches: 16, Indels: 30
0.81 0.07 0.12
Matches are distributed among these distances:
58 7 0.04
59 4 0.02
60 91 0.46
61 10 0.05
62 65 0.33
63 2 0.01
64 14 0.07
66 5 0.03
ACGTcount: A:0.16, C:0.20, G:0.24, T:0.40
Consensus pattern (64 bp):
ATTTTCTTAATCGCGTTGCGATTCTTGGAAATCGCGTTGCGATTTTCTTGAAGATCGCGTTGCG
Found at i:1759632 original size:20 final size:20
Alignment explanation
Indices: 1759352--1759659 Score: 253
Period size: 20 Copynumber: 15.2 Consensus size: 20
1759342 GAATTTACTC
1759352 ATTTTCTGAATCGCGTTGCG
1 ATTTTCTGAATCGCGTTGCG
*
1759372 ATTCTT-GGAATCGCGTTGCG
1 ATT-TTCTGAATCGCGTTGCG
1759392 ATTTTCTGAATCGCGTTGCG
1 ATTTTCTGAATCGCGTTGCG
*
1759412 ATTCTT-GGAATCGCGTTGCG
1 ATT-TTCTGAATCGCGTTGCG
*
1759432 ATTTTCTTAATCGCGTTGCG
1 ATTTTCTGAATCGCGTTGCG
*
1759452 ATTCTT-GGAATCGCGTTGCG
1 ATT-TTCTGAATCGCGTTGCG
*
1759472 ATTTTCTTAATCGCGTTGCG
1 ATTTTCTGAATCGCGTTGCG
*
1759492 ATTCTT-GGAATCGCGTTGCG
1 ATT-TTCTGAATCGCGTTGCG
*
1759512 ATTCTT-GGAAGATCGCGTTGCG
1 ATT-TTCTG-A-ATCGCGTTGCG
* * *
1759534 ATTCTCTTAATCGCATTGCG
1 ATTTTCTGAATCGCGTTGCG
*
1759554 ATTCTT-GGAATATCGCGTTGCG
1 ATT-TTCTG-A-ATCGCGTTGCG
1759576 ATTTTCTTTTG-A-C-CGTTGCG
1 ATTTTC---TGAATCGCGTTGCG
** *
1759596 ATTTTCT-TTTCAACGTTGCG
1 ATTTTCTGAATC-GCGTTGCG
*
1759616 ATTTTCTAAATCGCGTTGCG
1 ATTTTCTGAATCGCGTTGCG
*
1759636 ATTTT-T-ATTTCGCGTTGCG
1 ATTTTCTGA-ATCGCGTTGCG
1759655 ATTTT
1 ATTTT
1759660 GTTGGTCATT
Statistics
Matches: 240, Mismatches: 25, Indels: 47
0.77 0.08 0.15
Matches are distributed among these distances:
17 1 0.00
18 2 0.01
19 22 0.09
20 168 0.70
21 18 0.08
22 28 0.12
25 1 0.00
ACGTcount: A:0.16, C:0.19, G:0.24, T:0.41
Consensus pattern (20 bp):
ATTTTCTGAATCGCGTTGCG
Found at i:1761707 original size:49 final size:49
Alignment explanation
Indices: 1761610--1761755 Score: 181
Period size: 49 Copynumber: 3.0 Consensus size: 49
1761600 TTGAATTAGC
* * * * *
1761610 AAATAGAATCTGCAATGGCA-GGGAAATAATGTAGAACAGCAGATGCTA
1 AAATGGAATCTGCAATGGTACGGGAAACAATGTAGATCATCAGATGCTA
*
1761658 AAATGGAATCTGCAATGGTACGGAAAACAATGTAGATCATCAGATGCTA
1 AAATGGAATCTGCAATGGTACGGGAAACAATGTAGATCATCAGATGCTA
* * *
1761707 AAATGGATTCCGCAATGGT-CAGGGAAAC-ATGTAGATGATCAGATGCTA
1 AAATGGAATCTGCAATGGTAC-GGGAAACAATGTAGATCATCAGATGCTA
1761755 A
1 A
1761756 GTGGGTATGT
Statistics
Matches: 86, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
48 39 0.45
49 47 0.55
ACGTcount: A:0.40, C:0.14, G:0.25, T:0.21
Consensus pattern (49 bp):
AAATGGAATCTGCAATGGTACGGGAAACAATGTAGATCATCAGATGCTA
Found at i:1763050 original size:59 final size:57
Alignment explanation
Indices: 1762970--1763109 Score: 147
Period size: 57 Copynumber: 2.4 Consensus size: 57
1762960 AATCGGTTTC
* * * * * * *
1762970 TAAATTTTAAAA-AGTTATATATGAGTCCCCAATCTTTGACCCTATTCTAAATTGATACT
1 TAAACTTTAAAACA-TTTTATATCAGTCCCCAAACTATGA-CC-ATTCTAAAATGACACT
** *
1763029 TAAACTTTAAAACATTTTATATCAGTTTCCAAACTATGACCATTCTAAAATGACCCT
1 TAAACTTTAAAACATTTTATATCAGTCCCCAAACTATGACCATTCTAAAATGACACT
*
1763086 TAAACCTTAAAACATTTTATATCA
1 TAAACTTTAAAACATTTTATATCA
1763110 ATCTTCAAAC
Statistics
Matches: 69, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
57 36 0.52
58 2 0.03
59 30 0.43
60 1 0.01
ACGTcount: A:0.39, C:0.19, G:0.06, T:0.37
Consensus pattern (57 bp):
TAAACTTTAAAACATTTTATATCAGTCCCCAAACTATGACCATTCTAAAATGACACT
Found at i:1764536 original size:19 final size:20
Alignment explanation
Indices: 1764498--1764538 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
1764488 TGGAAGTTGG
1764498 AACCAACAAGGAAAAGAAAA
1 AACCAACAAGGAAAAGAAAA
* *
1764518 AACCAA-AAGTAAAATAAAA
1 AACCAACAAGGAAAAGAAAA
1764537 AA
1 AA
1764539 TGGAGCACAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.73, C:0.12, G:0.10, T:0.05
Consensus pattern (20 bp):
AACCAACAAGGAAAAGAAAA
Found at i:1765081 original size:37 final size:38
Alignment explanation
Indices: 1764996--1765081 Score: 106
Period size: 37 Copynumber: 2.3 Consensus size: 38
1764986 ATTAAACCTT
*
1764996 TTTTATATTTTTAATTTTATAAAAAAAATTATATAAATA
1 TTTTATA-ATTTAATTTTATAAAAAAAATTATATAAATA
* *
1765035 --TTATGAATTTAATTTTTTAAAGAAAA-TATATAAATA
1 TTTTAT-AATTTAATTTTATAAAAAAAATTATATAAATA
1765071 TTTTATAATTT
1 TTTTATAATTT
1765082 GTAATATTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
36 10 0.24
37 26 0.63
38 5 0.12
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (38 bp):
TTTTATAATTTAATTTTATAAAAAAAATTATATAAATA
Found at i:1768162 original size:69 final size:72
Alignment explanation
Indices: 1768081--1768221 Score: 211
Period size: 68 Copynumber: 2.0 Consensus size: 72
1768071 TTTTTAAATT
*
1768081 TAATAATTAAAAAAAAAATTTAAACATAA-TTTT-TTTAAATAA-TC-GAAAACATGATAATTCA
1 TAATAATT-AAAAAAAAATTTAAACATAACTTTTATTTAAAAAATTCAG-AAACATGATAATTCA
1768142 GTG-GACCC
64 GTGAGACCC
1768150 TAATAATTAAAAAAAAATTTAAACATAATCTTTTATTTAAAAAATTCAGAAACATGATAATTCAG
1 TAATAATTAAAAAAAAATTTAAACATAA-CTTTTATTTAAAAAATTCAGAAACATGATAATTCAG
1768215 TGAGACC
65 TGAGACC
1768222 TATTTTAATG
Statistics
Matches: 65, Mismatches: 1, Indels: 8
0.88 0.01 0.11
Matches are distributed among these distances:
68 20 0.31
69 8 0.12
70 4 0.06
71 8 0.12
72 20 0.31
73 5 0.08
ACGTcount: A:0.51, C:0.10, G:0.07, T:0.32
Consensus pattern (72 bp):
TAATAATTAAAAAAAAATTTAAACATAACTTTTATTTAAAAAATTCAGAAACATGATAATTCAGT
GAGACCC
Found at i:1773587 original size:17 final size:17
Alignment explanation
Indices: 1773565--1773602 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
1773555 TTAGCAAGAC
1773565 TCACTTCTGCACAAAAT
1 TCACTTCTGCACAAAAT
1773582 TCACTTCTGCACAAAAT
1 TCACTTCTGCACAAAAT
1773599 TCAC
1 TCAC
1773603 ACAGAGATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.34, C:0.32, G:0.05, T:0.29
Consensus pattern (17 bp):
TCACTTCTGCACAAAAT
Found at i:1773838 original size:51 final size:51
Alignment explanation
Indices: 1773722--1773848 Score: 201
Period size: 51 Copynumber: 2.6 Consensus size: 51
1773712 TAAAGGGCTT
*
1773722 CAAC-GCCTGCACTACTTCAACAAT-A--ATGATATGACATTCACTATTCC
1 CAACAGCCTGCACTACTTCAAAAATAATTATGATATGACATTCACTATTCC
1773769 CAACAGCCTGCACTACTTCAAAAATAATTATGGATATGACATTCACTATT-C
1 CAACAGCCTGCACTACTTCAAAAATAATTAT-GATATGACATTCACTATTCC
1773820 CAACAGCCTGCACTACTTCAAAAATAATT
1 CAACAGCCTGCACTACTTCAAAAATAATT
1773849 TTTAAGTAGA
Statistics
Matches: 74, Mismatches: 1, Indels: 6
0.91 0.01 0.07
Matches are distributed among these distances:
47 4 0.05
48 19 0.26
49 1 0.01
51 32 0.43
52 18 0.24
ACGTcount: A:0.37, C:0.27, G:0.09, T:0.28
Consensus pattern (51 bp):
CAACAGCCTGCACTACTTCAAAAATAATTATGATATGACATTCACTATTCC
Found at i:1785133 original size:2 final size:2
Alignment explanation
Indices: 1785126--1785150 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
1785116 CGTCACTAAT
1785126 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
1785151 GAAAATATTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1785399 original size:21 final size:21
Alignment explanation
Indices: 1785373--1785545 Score: 136
Period size: 21 Copynumber: 8.4 Consensus size: 21
1785363 GCTTTGCATT
* *
1785373 TCGCGTTGCGATAATTGGAAA
1 TCGCGTTGCGATAGTTGAAAA
1785394 TCGCGTTGCGATAGTTGAAAA
1 TCGCGTTGCGATAGTTGAAAA
* * * ** **
1785415 TCGCGTTACAAT-TTTTCATT
1 TCGCGTTGCGATAGTTGAAAA
* ** **
1785435 TCGCGTTGCGAT-TTTCCATT
1 TCGCGTTGCGATAGTTGAAAA
*
1785455 TCGCGTTGCAATAGTTGAAAA
1 TCGCGTTGCGATAGTTGAAAA
* ** **
1785476 TCGCGTTGCGAT-TTTCCAGT
1 TCGCGTTGCGATAGTTGAAAA
*
1785496 TCACGTTGCGATAGTTGAAAA
1 TCGCGTTGCGATAGTTGAAAA
1785517 TCGCGTTGCGATAGTTGAAAA
1 TCGCGTTGCGATAGTTGAAAA
1785538 TCGCGTTG
1 TCGCGTTG
1785546 TGATTTTCTA
Statistics
Matches: 119, Mismatches: 31, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
20 45 0.38
21 74 0.62
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.35
Consensus pattern (21 bp):
TCGCGTTGCGATAGTTGAAAA
Found at i:1785440 original size:20 final size:20
Alignment explanation
Indices: 1785415--1785466 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
1785405 TAGTTGAAAA
* *
1785415 TCGCGTTACAATTTTTCATT
1 TCGCGTTGCAATTTTCCATT
*
1785435 TCGCGTTGCGATTTTCCATT
1 TCGCGTTGCAATTTTCCATT
1785455 TCGCGTTGCAAT
1 TCGCGTTGCAAT
1785467 AGTTGAAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.15, C:0.23, G:0.17, T:0.44
Consensus pattern (20 bp):
TCGCGTTGCAATTTTCCATT
Found at i:1785476 original size:61 final size:62
Alignment explanation
Indices: 1785376--1785544 Score: 205
Period size: 61 Copynumber: 2.7 Consensus size: 62
1785366 TTGCATTTCG
* ** * * *
1785376 CGTTGCGATAATTGGAAATCGCGTTGCGATAGTTGAAAATCGCGTTACAATTTTTCATTTCG
1 CGTTGCGATAGTTCAAAATCGCGTTGCGATAGTTGAAAATCGCGTTACAATTTTCCAGTTCA
* * ** * * *
1785438 CGTTGCGAT-TTTCCATTTCGCGTTGCAATAGTTGAAAATCGCGTTGCGATTTTCCAGTTCA
1 CGTTGCGATAGTTCAAAATCGCGTTGCGATAGTTGAAAATCGCGTTACAATTTTCCAGTTCA
*
1785499 CGTTGCGATAGTTGAAAATCGCGTTGCGATAGTTGAAAATCGCGTT
1 CGTTGCGATAGTTCAAAATCGCGTTGCGATAGTTGAAAATCGCGTT
1785545 GTGATTTTCT
Statistics
Matches: 89, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
61 50 0.56
62 39 0.44
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.35
Consensus pattern (62 bp):
CGTTGCGATAGTTCAAAATCGCGTTGCGATAGTTGAAAATCGCGTTACAATTTTCCAGTTCA
Found at i:1785480 original size:41 final size:41
Alignment explanation
Indices: 1785435--1785528 Score: 161
Period size: 41 Copynumber: 2.3 Consensus size: 41
1785425 ATTTTTCATT
* *
1785435 TCGCGTTGCGATTTTCCATTTCGCGTTGCAATAGTTGAAAA
1 TCGCGTTGCGATTTTCCAGTTCACGTTGCAATAGTTGAAAA
*
1785476 TCGCGTTGCGATTTTCCAGTTCACGTTGCGATAGTTGAAAA
1 TCGCGTTGCGATTTTCCAGTTCACGTTGCAATAGTTGAAAA
1785517 TCGCGTTGCGAT
1 TCGCGTTGCGAT
1785529 AGTTGAAAAT
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 50 1.00
ACGTcount: A:0.20, C:0.20, G:0.24, T:0.35
Consensus pattern (41 bp):
TCGCGTTGCGATTTTCCAGTTCACGTTGCAATAGTTGAAAA
Found at i:1785590 original size:62 final size:61
Alignment explanation
Indices: 1785380--1785571 Score: 174
Period size: 61 Copynumber: 3.1 Consensus size: 61
1785370 ATTTCGCGTT
* * * * * * *
1785380 GCGATAATTGGAAATCGCGTTGCGATAGTTGAAAATCGCGTTACAATTTTTC-ATTTCGCGTT
1 GCGATAGTTGAAAATCGCGTTGCGATAGTTGAAAATCGCGTTGCGA-TTTTCAAATT-ACGTA
* ** ** * * * *
1785442 GCGAT-TTTCCATTTCGCGTTGCAATAGTTGAAAATCGCGTTGCGATTTTCCAGTTCACGTT
1 GCGATAGTTGAAAATCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTCAAATT-ACGTA
*
1785503 GCGATAGTTGAAAATCGCGTTGCGATAGTTGAAAATCGCGTTGTGATTTTCTAAATT-CGTA
1 GCGATAGTTGAAAATCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTC-AAATTACGTA
1785564 GCGATAGT
1 GCGATAGT
1785572 CTACAGTTGT
Statistics
Matches: 107, Mismatches: 20, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
60 5 0.05
61 56 0.52
62 43 0.40
63 3 0.03
ACGTcount: A:0.24, C:0.17, G:0.23, T:0.35
Consensus pattern (61 bp):
GCGATAGTTGAAAATCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTCAAATTACGTA
Found at i:1786212 original size:6 final size:6
Alignment explanation
Indices: 1786201--1786225 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
1786191 CTCGTCTCGA
1786201 GACGTG GACGTG GACGTG GACGTG G
1 GACGTG GACGTG GACGTG GACGTG G
1786226 TAATACGTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.16, G:0.52, T:0.16
Consensus pattern (6 bp):
GACGTG
Found at i:1787535 original size:5 final size:5
Alignment explanation
Indices: 1787525--1787613 Score: 66
Period size: 5 Copynumber: 18.6 Consensus size: 5
1787515 TAGATATAAA
* * **
1787525 AAAAT AAAAT AAAAT -AAAT -AAAT -AAAT AAATT CAACC AAAAT AAAA-
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
1787571 AGAAAT AAAAT AAAAT AAAAT AATAA- ATAAAT -AAAT -AAAT AAA
1 A-AAAT AAAAT AAAAT AAAAT AA-AAT A-AAAT AAAAT AAAAT AAA
1787614 GCATAGAAAA
Statistics
Matches: 70, Mismatches: 7, Indels: 14
0.77 0.08 0.15
Matches are distributed among these distances:
4 21 0.30
5 45 0.64
6 4 0.06
ACGTcount: A:0.75, C:0.03, G:0.01, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:1787545 original size:4 final size:4
Alignment explanation
Indices: 1787520--1787613 Score: 61
Period size: 4 Copynumber: 22.2 Consensus size: 4
1787510 CATGTTAGAT
*
1787520 ATAA AAAA ATAAA ATAAA ATAA ATAA ATAA ATAA ATTCAA CCA-AA AT-A
1 ATAA ATAA AT-AA AT-AA ATAA ATAA ATAA ATAA A-T-AA --ATAA ATAA
*
1787568 A-AA AGAA ATAAA ATAAA ATAA A-ATA ATAA ATAA ATAA ATAA ATAA A
1 ATAA ATAA AT-AA AT-AA ATAA ATA-A ATAA ATAA ATAA ATAA ATAA A
1787614 GCATAGAAAA
Statistics
Matches: 76, Mismatches: 3, Indels: 22
0.75 0.03 0.22
Matches are distributed among these distances:
3 6 0.08
4 45 0.59
5 22 0.29
6 2 0.03
8 1 0.01
ACGTcount: A:0.76, C:0.03, G:0.01, T:0.20
Consensus pattern (4 bp):
ATAA
Done.