Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000844.1 Hibiscus syriacus cultivar Beakdansim tig00001628_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63146

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14502--14554
27
2.0
26
88
3
79
64
0
0
35
0.94
14486--14539
18
2.9
19
73
10
58
68
0
0
31
0.90
16648--16778
68
1.9
68
87
6
194
48
16
12
23
1.79
16649--16795
68
2.2
68
84
7
183
48
15
11
23
1.78
18404--18588
61
3.1
58
77
9
183
35
4
25
34
1.76
18424--18592
61
2.8
60
81
4
196
36
4
25
34
1.75
18837--18876
2
20.0
2
100
0
80
50
0
0
50
1.00
19306--19372
13
5.4
13
74
16
70
49
0
0
50
1.00
19308--19369
22
2.8
23
85
4
83
50
0
0
50
1.00
21935--21968
16
2.1
16
88
0
50
50
0
2
47
1.16
22008--22041
16
2.0
18
88
11
54
26
2
5
64
1.30
23138--23210
35
2.1
35
92
0
119
34
1
21
42
1.62
24800--25510
211
3.4
210
91
1
1134
51
7
11
28
1.66
25517--25573
7
8.1
7
82
7
53
21
0
31
47
1.51
25517--25573
21
2.7
21
82
12
73
21
0
31
47
1.51
25576--25614
6
6.5
6
93
0
69
30
0
2
66
1.05
25635--25683
24
1.9
26
88
12
75
38
6
2
53
1.38
25646--25739
33
2.9
33
87
6
131
42
7
4
45
1.51
25633--25683
13
3.8
13
82
12
68
39
5
1
52
1.37
25690--25741
13
3.6
13
75
22
50
46
9
5
38
1.61
25697--25934
18
12.7
18
68
26
122
42
9
7
39
1.67
25705--25772
22
3.2
22
72
16
79
45
8
5
39
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25685--25778
42
2.2
43
83
14
133
45
9
5
39
1.59
25786--25902
38
2.9
39
80
12
148
41
8
8
41
1.66
25931--26061
2
63.0
2
69
18
72
42
5
4
47
1.46
25937--26056
55
2.2
53
88
2
168
42
5
4
47
1.46
25880--26015
33
4.3
33
76
14
142
41
8
5
43
1.60
25900--26085
20
9.5
20
65
23
58
43
6
4
44
1.52
27778--27818
17
2.4
17
95
0
73
46
7
0
46
1.30
30351--30403
26
2.0
26
100
0
106
26
24
15
33
1.95
32998--33024
13
2.1
13
100
0
54
33
29
22
14
1.94
36625--36688
31
2.1
31
87
0
92
35
28
28
7
1.85
47758--47934
46
3.8
46
86
0
228
24
20
10
44
1.82
47818--47934
26
5.0
25
64
28
78
22
18
11
47
1.81
51287--51320
16
2.1
17
88
5
52
35
0
0
64
0.94
51281--51326
23
2.0
23
82
0
56
39
0
0
60
0.97

Tables:   1

The End!