genome.fa.s8441.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008441.1 Hibiscus syriacus cultivar Beakdansim tig00111242_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  151049

Tables:   1   

This is table  1  of  1  ( 84 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3204--3246	9	4.7	9	85	8	52	18	4	0	76	0.95
3204--3247	20	2.1	21	84	12	56	20	4	0	75	0.98
3217--3263	21	2.2	21	77	7	51	19	8	2	70	1.24
3985--4011	2	13.5	2	100	0	54	51	0	0	48	1.00
10760--10826	15	4.5	15	70	7	55	41	25	4	28	1.74
14371--14446	33	2.3	31	82	15	82	56	0	11	31	1.35
24057--24203	60	2.5	60	83	6	174	34	17	15	32	1.92
35606--35671	31	2.1	31	86	10	91	45	7	3	43	1.47
35604--35663	19	3.6	18	70	29	51	45	6	1	46	1.39
36057--36110	20	2.5	22	72	27	62	40	33	12	12	1.82
36066--36104	20	2.0	20	90	9	64	46	33	10	10	1.72
39286--39341	23	2.3	23	90	9	85	12	1	3	82	0.88
39291--39350	23	2.7	23	82	7	70	15	3	3	78	1.01
42417--42450	16	2.3	14	90	10	50	79	5	14	0	0.91
42523--42660	69	2.0	69	91	2	224	38	23	13	23	1.91
44205--44289	31	2.5	32	81	12	100	27	21	12	38	1.90
44228--44286	31	1.9	31	96	0	109	27	22	15	35	1.94
44292--44406	36	3.2	36	80	7	142	26	21	13	39	1.90
44225--44442	118	1.8	114	79	11	242	28	20	11	38	1.88
44368--44521	63	2.4	64	82	9	188	33	21	8	37	1.84
45180--45546	110	3.4	109	87	4	485	34	24	16	23	1.95
46834--47115	2	146.5	2	69	15	76	36	4	2	57	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47045--47133	43	2.0	45	82	8	112	31	3	1	64	1.17
47353--47414	19	3.2	19	76	4	61	9	3	6	80	0.99
48640--48787	79	1.9	79	88	0	224	41	12	9	35	1.76
49791--49917	66	2.0	61	92	7	209	22	25	21	31	1.98
52776--52860	42	2.0	43	97	2	163	35	10	4	49	1.58
53041--53180	45	3.1	45	63	21	112	43	11	6	38	1.66
53026--53197	90	1.9	91	97	2	330	44	10	7	37	1.67
53040--53218	90	2.0	89	88	5	225	45	10	6	36	1.65
54160--54209	26	1.9	26	100	0	100	42	8	20	30	1.80
56575--56710	60	2.3	60	81	6	143	33	19	16	30	1.94
56738--56787	22	2.3	22	96	0	91	26	18	2	54	1.54
57383--57414	6	5.3	6	100	0	64	34	0	65	0	0.93
61383--61536	60	2.6	58	83	6	175	31	19	4	44	1.71
61667--61802	60	2.3	59	81	9	152	42	3	19	33	1.69
73513--74099	296	2.0	295	82	3	723	39	12	14	33	1.84
75851--76126	139	2.0	139	89	0	417	35	14	20	28	1.92
82005--82043	19	2.1	19	90	0	60	17	38	17	25	1.92
90235--90290	22	2.7	21	83	10	62	30	23	17	28	1.97
91816--91859	21	2.1	21	86	0	61	9	36	15	38	1.80
92889--92927	19	2.1	19	95	0	69	20	38	15	25	1.92
92826--93035	65	3.2	64	79	8	212	30	24	17	27	1.97
92826--93055	64	3.6	64	80	6	216	30	25	17	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95585--95623	12	3.2	13	92	7	57	30	0	0	69	0.89
99102--100547	770	1.9	779	85	3	2029	36	13	15	34	1.86
101635--101695	3	20.7	3	83	3	79	29	0	1	68	0.99
102623--102668	23	2.0	23	83	8	58	54	13	2	30	1.50
112803--112851	23	2.1	23	85	7	64	57	12	2	28	1.46
114442--114560	25	5.1	23	72	18	86	17	2	3	76	1.04
114443--114559	12	9.9	12	68	22	52	17	2	3	76	1.05
114446--114520	22	3.5	21	80	10	71	17	2	2	77	1.00
114492--114540	19	2.6	19	78	12	55	14	4	2	79	0.97
114494--114574	40	2.0	40	81	13	96	16	4	3	75	1.12
114469--114560	10	8.7	11	70	16	61	16	3	2	78	0.98
119021--119068	12	4.1	11	84	10	60	22	12	0	64	1.27
119038--119084	21	2.1	22	84	7	60	19	10	0	70	1.16
137305--137353	20	2.4	21	82	3	64	65	0	4	30	1.11
138149--138223	39	1.9	39	94	0	132	36	28	13	22	1.92
141863--142020	21	7.8	20	70	7	77	37	24	17	19	1.93
141988--142181	20	9.6	20	76	8	76	35	25	19	19	1.95
141988--142181	40	4.8	39	82	3	199	35	25	19	19	1.95
141988--142180	60	3.2	60	83	0	251	35	25	19	19	1.95
142325--142366	20	2.0	21	86	4	59	23	38	14	23	1.92
142559--142629	33	2.2	33	92	0	115	11	22	18	47	1.80
142750--142804	14	3.6	14	73	21	56	41	23	25	9	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
142750--142820	33	2.2	33	94	0	124	43	25	22	8	1.81
142816--142913	19	5.7	19	70	22	81	10	24	22	42	1.84
142838--142927	14	5.7	14	74	23	81	8	25	23	42	1.83
142821--142935	33	3.5	33	95	0	212	9	24	20	45	1.81
144622--144996	91	4.1	93	97	2	706	22	12	18	46	1.83
145040--145168	19	7.3	19	75	17	125	45	28	17	8	1.77
145076--145168	33	2.8	32	91	4	150	46	27	18	7	1.76
145040--145168	52	2.5	52	74	14	140	45	28	17	8	1.77
145164--145295	19	7.6	19	73	18	101	11	19	24	44	1.83
145169--145258	31	2.8	33	88	8	150	11	21	22	45	1.82
147181--147216	14	2.6	14	95	0	63	33	0	22	44	1.53
147322--147404	19	4.6	19	80	17	113	43	18	24	14	1.87
147411--147671	19	14.9	18	82	15	311	14	22	17	45	1.84
147411--147675	52	5.0	52	91	6	428	14	22	16	45	1.84
149958--149982	12	2.1	12	100	0	50	0	28	0	72	0.86
150156--150202	24	2.0	24	87	8	69	38	21	14	25	1.92
150869--151043	20	8.8	20	87	1	226	20	17	25	36	1.94
150869--151049	40	4.6	40	93	4	260	20	17	25	35	1.95

Tables:   1

The End!