Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008442.1 Hibiscus syriacus cultivar Beakdansim tig00111244_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 816021
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 5
Found at i:6699 original size:57 final size:57
Alignment explanation
Indices: 6630--6775 Score: 170
Period size: 57 Copynumber: 2.6 Consensus size: 57
6620 TCAGGTAACT
* * *
6630 ATTTTATAACTTTTAATAGTCAGAAGACTCAATAATATAGATTATAGTCGAGAT-ATC
1 ATTTTGTAACTTTTAATAGTCAGAAGACTCAATAAAATAGATTATAATCGAG-TGATC
* ** *
6687 ATTTTGTAACTTTTAATAGTCA-ATGAACTCAATAAAATATCTTATAATTGAGTGATC
1 ATTTTGTAACTTTTAATAGTCAGAAG-ACTCAATAAAATAGATTATAATCGAGTGATC
* * *
6744 ATTTTGTAAATTTTAATAGTCAGTAGATTCAA
1 ATTTTGTAACTTTTAATAGTCAGAAGACTCAA
6776 CAAAGAAACA
Statistics
Matches: 75, Mismatches: 11, Indels: 6
0.82 0.12 0.07
Matches are distributed among these distances:
56 3 0.04
57 71 0.95
58 1 0.01
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.40
Consensus pattern (57 bp):
ATTTTGTAACTTTTAATAGTCAGAAGACTCAATAAAATAGATTATAATCGAGTGATC
Found at i:7149 original size:28 final size:28
Alignment explanation
Indices: 7117--7177 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 28
7107 TATAATGAAA
7117 TATTAATAATATA-TTATTAAAATATTTT
1 TATTAATAATATACTTATTAAAA-ATTTT
* *
7145 TATTAATAATTTACTTATTTAAAATTTT
1 TATTAATAATATACTTATTAAAAATTTT
*
7173 AATTA
1 TATTA
7178 TTTAAAAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 21 0.72
29 8 0.28
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (28 bp):
TATTAATAATATACTTATTAAAAATTTT
Found at i:7173 original size:16 final size:16
Alignment explanation
Indices: 7154--7184 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7144 TTATTAATAA
*
7154 TTTACTTATTTAAAAT
1 TTTAATTATTTAAAAT
7170 TTTAATTATTTAAAA
1 TTTAATTATTTAAAA
7185 ATAATAAAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (16 bp):
TTTAATTATTTAAAAT
Found at i:10934 original size:18 final size:18
Alignment explanation
Indices: 10911--10951 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
10901 AGTTTAGGTG
10911 TTGGGCTAGGGTTTGGGT
1 TTGGGCTAGGGTTTGGGT
*
10929 TTGGGCTCGGGTTTGGGT
1 TTGGGCTAGGGTTTGGGT
10947 TTGGG
1 TTGGG
10952 TTTGGATGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.02, C:0.07, G:0.51, T:0.39
Consensus pattern (18 bp):
TTGGGCTAGGGTTTGGGT
Found at i:10970 original size:7 final size:6
Alignment explanation
Indices: 10919--10975 Score: 69
Period size: 6 Copynumber: 9.2 Consensus size: 6
10909 TGTTGGGCTA
* * *
10919 GGGTTT GGGTTT GGGCTC GGGTTT GGGTTT GGGTTT GGATGTT GGGTATT
1 GGGTTT GGGTTT GGGTTT GGGTTT GGGTTT GGGTTT GGGT-TT GGGT-TT
10969 GGGTTT G
1 GGGTTT G
10976 TAATAAATAA
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
6 32 0.74
7 11 0.26
ACGTcount: A:0.04, C:0.04, G:0.49, T:0.44
Consensus pattern (6 bp):
GGGTTT
Found at i:10989 original size:3 final size:3
Alignment explanation
Indices: 10976--11036 Score: 72
Period size: 3 Copynumber: 20.3 Consensus size: 3
10966 ATTGGGTTTG
* *
10976 TAA TAAA TAA TAA TAA TAA TAA TAA T-A TAA TAA TAA TTTA TTA TAA
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA
11022 TAA TAA TAA T-A TAA T
1 TAA TAA TAA TAA TAA T
11037 GGTTGAAAAA
Statistics
Matches: 52, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
2 4 0.08
3 43 0.83
4 5 0.10
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (3 bp):
TAA
Found at i:11011 original size:30 final size:30
Alignment explanation
Indices: 10976--11036 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
10966 ATTGGGTTTG
10976 TAATAAATAATAATAATAATAATAATATAA
1 TAATAAATAATAATAATAATAATAATATAA
* * *
11006 TAATAATTTATTATAATAATAATAATATAA
1 TAATAAATAATAATAATAATAATAATATAA
11036 T
1 T
11037 GGTTGAAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (30 bp):
TAATAAATAATAATAATAATAATAATATAA
Found at i:11880 original size:21 final size:21
Alignment explanation
Indices: 11856--11897 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
11846 AAACGTTATT
11856 CTCATT-ATGAAGTTCTTCTCC
1 CTCATTGATG-AGTTCTTCTCC
11877 CTCATTGGATGAGTTCTTCTC
1 CTCATT-GATGAGTTCTTCTC
11898 ATTATGAACC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 6 0.32
22 10 0.53
23 3 0.16
ACGTcount: A:0.17, C:0.26, G:0.14, T:0.43
Consensus pattern (21 bp):
CTCATTGATGAGTTCTTCTCC
Found at i:13021 original size:14 final size:15
Alignment explanation
Indices: 12991--13027 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
12981 TTGAACCCTG
12991 TTTTT-TCTTTTCAC
1 TTTTTCTCTTTTCAC
*
13005 TTTTTCTCTTTT-TC
1 TTTTTCTCTTTTCAC
13019 TTTTTCTCT
1 TTTTTCTCT
13028 CCTTCATTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 15 0.71
15 6 0.29
ACGTcount: A:0.03, C:0.22, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTTTCTCTTTTCAC
Found at i:26981 original size:9 final size:10
Alignment explanation
Indices: 26963--26995 Score: 52
Period size: 9 Copynumber: 3.5 Consensus size: 10
26953 ATTGGGTTTG
26963 TAATAAATAA
1 TAATAAATAA
26973 TAA-AAATAA
1 TAATAAATAA
26982 TAATAAA-AA
1 TAATAAATAA
26991 TAATA
1 TAATA
26996 TAATGGTTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 16 0.73
10 6 0.27
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (10 bp):
TAATAAATAA
Found at i:26985 original size:12 final size:12
Alignment explanation
Indices: 26968--26995 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
26958 GTTTGTAATA
26968 AATAATAAAAAT
1 AATAATAAAAAT
26980 AATAATAAAAAT
1 AATAATAAAAAT
26992 AATA
1 AATA
26996 TAATGGTTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (12 bp):
AATAATAAAAAT
Found at i:29991 original size:23 final size:23
Alignment explanation
Indices: 29947--29991 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
29937 TTTTAATAAC
* * *
29947 TTTGTTTTTATGATACATTTTTA
1 TTTGTCTTTATGACACAGTTTTA
*
29970 TTTGTCTTTATGACACGGTTTT
1 TTTGTCTTTATGACACAGTTTT
29992 CTCTATCTTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.18, C:0.09, G:0.13, T:0.60
Consensus pattern (23 bp):
TTTGTCTTTATGACACAGTTTTA
Found at i:31294 original size:19 final size:20
Alignment explanation
Indices: 31265--31302 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
31255 ATTATAGGTA
31265 CAAATATGACAAAACCGGTC
1 CAAATATGACAAAACCGGTC
31285 CAAA-ATGACAAAACCGGT
1 CAAATATGACAAAACCGGT
31303 AAAACGCTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.47, C:0.24, G:0.16, T:0.13
Consensus pattern (20 bp):
CAAATATGACAAAACCGGTC
Found at i:31689 original size:163 final size:163
Alignment explanation
Indices: 31419--31716 Score: 492
Period size: 163 Copynumber: 1.8 Consensus size: 163
31409 TAAAAAAATA
* *
31419 TATCGATCCATAACAATATAACAAGTAAAAATATGATAAAACATGTCTCAAAATTGACAAAACCA
1 TATCGATCCATAACAATATAACAAGTAAAAATATGATAAAACACGTCTCAAAAATGACAAAACCA
* * *
31484 ATAAAACGATATCGGATATGTTGAAAGTGTCGATACTTTAATATAAGTATCAACACTTTATGAAA
66 ATAAAAAGATACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCAACACTTTATGAAA
31549 TTAAACTAAAAAATGTCGACATTTATGAAAGTG
131 TTAAACTAAAAAATGTCGACATTTATGAAAGTG
*
31582 TATCGATCCATAACAATATAACAGGTAAAAATATGATAAAACACGTCTCAAAAATGACAAAACCA
1 TATCGATCCATAACAATATAACAAGTAAAAATATGATAAAACACGTCTCAAAAATGACAAAACCA
*
31647 GA-AAAAAGATACCGGATATG-TGAAAAGTGTCGATAATTTAATATAAGTATCGACACTTTATGA
66 -ATAAAAAGATACCGGATATGTTG-AAAGTGTCGATAATTTAATATAAGTATCAACACTTTATGA
*
31710 ATTTAAA
129 AATTAAA
31717 AGAGAAGAAG
Statistics
Matches: 125, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
162 2 0.02
163 122 0.98
164 1 0.01
ACGTcount: A:0.47, C:0.13, G:0.13, T:0.27
Consensus pattern (163 bp):
TATCGATCCATAACAATATAACAAGTAAAAATATGATAAAACACGTCTCAAAAATGACAAAACCA
ATAAAAAGATACCGGATATGTTGAAAGTGTCGATAATTTAATATAAGTATCAACACTTTATGAAA
TTAAACTAAAAAATGTCGACATTTATGAAAGTG
Found at i:32101 original size:184 final size:182
Alignment explanation
Indices: 31580--32238 Score: 953
Period size: 183 Copynumber: 3.6 Consensus size: 182
31570 TTTATGAAAG
*
31580 TGTATCGATCCATAACAATATAACAGGTAAAAATATGATAAAACACGTCTCAAAAATGACAAAAC
1 TGTATCGATCCATAACAATATAACAGGTAAAAATATGATAAAACAGGTCTC-AAAATGACAAAAC
* * *
31645 CAGAAAAAAGATACCGGATATG-TGAAAAGTGTCGATAATTTAATATAAGTATCGACACTTTATG
65 CAGTAAAACGATACCGGATATGTTG-AAAGTGTCGATAATTTAATATAAATATCGACACTTTATG
* * * **
31709 AATTTAAAAGAGAAGAAGTTATAGCACCTAAAAAGTGTCGACACTTTATGAAAA
129 AATTTAAAAGAGAAGAAGTTATAGCGCCTATAAAGTGTCGATACTTTAAAAAAA
* * * * *
31763 TGTATCGATCTATAACAATATAACAGCTAAAAATATGATAAAACCGGTCTCAACAATGAAAAAAT
1 TGTATCGATCCATAACAATATAACAGGTAAAAATATGATAAAACAGGTCTCAA-AATGACAAAAC
** * * *
31828 TGGTAAAACGATACCGGATATGTTGAAAGTATCGATACTTTAATATAACTATCGACACTTT-TGG
65 CAGTAAAACGATACCGGATATGTTGAAAGTGTCGATAATTTAATATAAATATCGACACTTTAT-G
31892 AATTTAAAAGAGAAGAAGTTATAGCGCCTATAAAGTGTCGATACTTTAAAAAAA
129 AATTTAAAAGAGAAGAAGTTATAGCGCCTATAAAGTGTCGATACTTTAAAAAAA
* *
31946 TGTATCGATCCATAATAATATAACAGGTAAAAATATGATAAAACATGTCTCAAAATTGACAAAAC
1 TGTATCGATCCATAACAATATAACAGGTAAAAATATGATAAAACAGGTCTCAAAA-TGACAAAAC
* *
32011 TAGTAAAACGCTATCCGGATATGTTGAAAGTGTCGATAATTTAATATAAATATCGACACTTTATG
65 CAGTAAAACGATA-CCGGATATGTTGAAAGTGTCGATAATTTAATATAAATATCGACACTTTATG
* *
32076 AATTTAAAAGAGAAGAAGTTATAGCGTCTATAAAGTGTCGATACTTTTAAAAAA
129 AATTTAAAAGAGAAGAAGTTATAGCGCCTATAAAGTGTCGATACTTTAAAAAAA
* *
32130 TGTATCGATCCATAACAATATAACAGGTAAAAATATAATAAAACCGGTCTCAAAATGACAAAACC
1 TGTATCGATCCATAACAATATAACAGGTAAAAATATGATAAAACAGGTCTCAAAATGACAAAACC
* * * * * *
32195 GGTAAAGCGCTATCGAATATGTTGAAAGTGTCGATACTTTAATA
66 AGTAAAACGATACCGGATATGTTGAAAGTGTCGATAATTTAATA
32239 AGTACACATA
Statistics
Matches: 428, Mismatches: 42, Indels: 13
0.89 0.09 0.03
Matches are distributed among these distances:
182 34 0.08
183 242 0.57
184 151 0.35
185 1 0.00
ACGTcount: A:0.45, C:0.13, G:0.15, T:0.27
Consensus pattern (182 bp):
TGTATCGATCCATAACAATATAACAGGTAAAAATATGATAAAACAGGTCTCAAAATGACAAAACC
AGTAAAACGATACCGGATATGTTGAAAGTGTCGATAATTTAATATAAATATCGACACTTTATGAA
TTTAAAAGAGAAGAAGTTATAGCGCCTATAAAGTGTCGATACTTTAAAAAAA
Found at i:32651 original size:19 final size:19
Alignment explanation
Indices: 32627--32672 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
32617 TATTTAATAT
32627 TTATAGGTAAAAAATGATA
1 TTATAGGTAAAAAATGATA
*
32646 TTATAGGTAGAAAATGATA
1 TTATAGGTAAAAAATGATA
*
32665 TTTTAGGT
1 TTATAGGT
32673 TGTATAAATG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.43, C:0.00, G:0.20, T:0.37
Consensus pattern (19 bp):
TTATAGGTAAAAAATGATA
Found at i:32801 original size:5 final size:5
Alignment explanation
Indices: 32791--32815 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
32781 TATAACCAGT
32791 ATTTG ATTTG ATTTG ATTTG ATTTG
1 ATTTG ATTTG ATTTG ATTTG ATTTG
32816 CGCAAACTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.20, T:0.60
Consensus pattern (5 bp):
ATTTG
Found at i:33960 original size:22 final size:22
Alignment explanation
Indices: 33909--33964 Score: 60
Period size: 24 Copynumber: 2.5 Consensus size: 22
33899 AATGTTTTTG
*
33909 TTTTTTTATATAAAATGATAGTA
1 TTTTATTATATAAAATGATAG-A
*
33932 TAGTTATTATATAAAATGATA-A
1 T-TTTATTATATAAAATGATAGA
33954 CTTTTATTATA
1 -TTTTATTATA
33965 AATGCAGGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
22 9 0.32
23 2 0.07
24 17 0.61
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.50
Consensus pattern (22 bp):
TTTTATTATATAAAATGATAGA
Found at i:34681 original size:22 final size:18
Alignment explanation
Indices: 34632--34670 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
34622 GAAAAAATTT
*
34632 GAAGAAGAGAAGATGGAG
1 GAAGAAGAAAAGATGGAG
34650 GAAGAAGAAAAGATGGAG
1 GAAGAAGAAAAGATGGAG
34668 GAA
1 GAA
34671 ATGAGGAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.54, C:0.00, G:0.41, T:0.05
Consensus pattern (18 bp):
GAAGAAGAAAAGATGGAG
Found at i:36179 original size:19 final size:20
Alignment explanation
Indices: 36137--36186 Score: 75
Period size: 19 Copynumber: 2.5 Consensus size: 20
36127 AATGCAGGGT
*
36137 TAATTTTGTATAAGAATTTT
1 TAATTTTGTATAAGAATTTA
*
36157 TAATTTTGTATATG-ATTTA
1 TAATTTTGTATAAGAATTTA
36176 TAATTTTGTAT
1 TAATTTTGTAT
36187 GTGAATGTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
19 15 0.54
20 13 0.46
ACGTcount: A:0.32, C:0.00, G:0.10, T:0.58
Consensus pattern (20 bp):
TAATTTTGTATAAGAATTTA
Found at i:36869 original size:199 final size:199
Alignment explanation
Indices: 36529--37791 Score: 2265
Period size: 199 Copynumber: 6.3 Consensus size: 199
36519 GTAAACTTAT
* * *
36529 GTGTCGATACAATTATAACAAGTGTCGATCCCAAAAACATCGAAAACCATAATTATAATGTAATA
1 GTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAACCCATAATGATAATGTAATA
*
36594 GGTAAATTAGCAATATAACCGGTCTAAATATACCGGTTTTTGAGAAAACAGGTGTACAAAAAGTA
66 GGTAAATTAGCAATATAACCGGTCTAAATATACCAGTTTTTGAGAAAACAGGTGTACAAAAAGTA
36659 TCGACACAAATCAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTA
131 TCGACACAAATCAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTA
36724 AAAA
196 AAAA
* * *
36728 GTGTCGATACATTTATAACAAATGTCGATCCCAAAATCATCGAAACCCATAATGATAAAGTAATA
1 GTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAACCCATAATGATAATGTAATA
* *** * * * *
36793 GGTAAACTAGCAATATAGTTGGTCTAAATATACCGGTTTTTGAGAAAATAGGTGTACAAAAAATT
66 GGTAAATTAGCAATATAACCGGTCTAAATATACCAGTTTTTGAGAAAACAGGTGTACAAAAAGTA
*
36858 TCGACACAAATCAAACAAGTGTCGATACTTTTGGTCCATAATGTATTTCAAAACCAAGTGCACTA
131 TCGACACAAATCAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTA
36923 AAAA
196 AAAA
36927 GTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAACCCATAATGATAATGTAATA
1 GTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAACCCATAATGATAATGTAATA
36992 GGTAAATTAGCAATATAACCGGTCTAAATATACCAGTTTTTGAGAAAACAGGTGTACAAAAAGTA
66 GGTAAATTAGCAATATAACCGGTCTAAATATACCAGTTTTTGAGAAAACAGGTGTACAAAAAGTA
37057 TCGACACAAATCAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTA
131 TCGACACAAATCAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTA
37122 AAAA
196 AAAA
* * *
37126 GTGTCGATACATTTATAACAAATGTCGATCCCAAAATCATCGAAACCCATAATGATAAAGTAATA
1 GTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAACCCATAATGATAATGTAATA
* * * *
37191 GGTAAACTAGCAATATAGCCGGTCTAAATATACCGGTTTTTGAGAAAATAGGTGTACAAAAAGTA
66 GGTAAATTAGCAATATAACCGGTCTAAATATACCAGTTTTTGAGAAAACAGGTGTACAAAAAGTA
*
37256 TCGACACAAATCAAACAAGTGTCGATACTTTTGGTCCATAATGTATTTCAAAACCAAGTGCACTA
131 TCGACACAAATCAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTA
37321 AAAA
196 AAAA
37325 GTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAACCCATAATGATAATGTAATA
1 GTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAACCCATAATGATAATGTAATA
37390 GGTAAATTAGCAATATAACCGGTCTAAATATACCAGTTTTTGAGAAAACAGGTGTACAAAAAGTA
66 GGTAAATTAGCAATATAACCGGTCTAAATATACCAGTTTTTGAGAAAACAGGTGTACAAAAAGTA
37455 TCGACACAAATCAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTA
131 TCGACACAAATCAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTA
37520 AAAA
196 AAAA
* *
37524 GTGTCAATACATTTATAACAAGTGTCGATCCCAAAAACATCAAAACCCATAATGATAATGTAATA
1 GTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAACCCATAATGATAATGTAATA
*
37589 GGTAAATTAGCAATATAACCGATCTAAATATACCAGTTTTTGAGAAAACAGGTGTACAAAAAGTA
66 GGTAAATTAGCAATATAACCGGTCTAAATATACCAGTTTTTGAGAAAACAGGTGTACAAAAAGTA
37654 TCGACACAAATCAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTA
131 TCGACACAAATCAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTA
37719 AAAA
196 AAAA
* *
37723 GTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATATAATA
1 GTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAACCCATAATGATAATGTAATA
37788 GGTA
66 GGTA
37792 GCAATGTAAC
Statistics
Matches: 1015, Mismatches: 49, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
199 1015 1.00
ACGTcount: A:0.42, C:0.17, G:0.15, T:0.26
Consensus pattern (199 bp):
GTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAACCCATAATGATAATGTAATA
GGTAAATTAGCAATATAACCGGTCTAAATATACCAGTTTTTGAGAAAACAGGTGTACAAAAAGTA
TCGACACAAATCAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTA
AAAA
Found at i:38196 original size:15 final size:15
Alignment explanation
Indices: 38178--38211 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
38168 ATCTCTTCTT
38178 AACCCACCTCTTCCC
1 AACCCACCTCTTCCC
**
38193 AACCCAGTTCTTCCC
1 AACCCACCTCTTCCC
38208 AACC
1 AACC
38212 ACAACCTCCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.24, C:0.53, G:0.03, T:0.21
Consensus pattern (15 bp):
AACCCACCTCTTCCC
Found at i:39112 original size:9 final size:9
Alignment explanation
Indices: 39098--39123 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
39088 CAATGATGGA
39098 AGAAGCTCC
1 AGAAGCTCC
39107 AGAAGCTCC
1 AGAAGCTCC
39116 AGAAGCTC
1 AGAAGCTC
39124 AAGTTGGATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.35, C:0.31, G:0.23, T:0.12
Consensus pattern (9 bp):
AGAAGCTCC
Found at i:41103 original size:200 final size:200
Alignment explanation
Indices: 40789--42535 Score: 2815
Period size: 200 Copynumber: 8.8 Consensus size: 200
40779 TACCTTTTTC
* *
40789 AAATATACCAGTTTTTGAGAAAACAGGTGTACAAAAAGTATCGAAACAAATAAAAAAAAGTGTCG
1 AAATATACCGGTTTTTGAGAAAACAGGTGTACAAAAAGTATCGACACAAAT-AAAAAAAGTGTCG
*
40854 ATACATCTTGTCCATATTGTATTTTAAAAACCAAGTGCACAACAAAGTGTCGATACATTTAAAAC
65 ATACATCTTGTCCAGATTGTATTTTAAAAACCAAGTGCACAACAAAGTGTCGATACATTTAAAAC
*
40919 AAGTGTCGATCCCAAAAACATCGAAAAACATAATTATAATGTAATAGGTAAATTATTAATGTAAC
130 AAGTGTCGATCCCGAAAACATCGAAAAACATAATTATAATGTAATAGGTAAATTATTAATGTAAC
40984 CGGTCT
195 CGGTCT
* *
40990 AAATATACCGGTTTTTGAGAAAACAGATGTACAAAAAGTATCGACACAAATAAAAAAAGTATCGA
1 AAATATACCGGTTTTTGAGAAAACAGGTGTACAAAAAGTATCGACACAAATAAAAAAAGTGTCGA
* *
41055 TACATCTTATCCAGATTGTATTTTAAAAACCAAGTGCACAATAAAGTGTCGATACATTTAAAACA
66 TACATCTTGTCCAGATTGTATTTTAAAAACCAAGTGCACAACAAAGTGTCGATACATTTAAAACA
* * *
41120 ATTGTCGATCCCGAAAACATTGAAAAACATAATTATAATGTAATAGGTAAATTATTAATGTAACT
131 AGTGTCGATCCCGAAAACATCGAAAAACATAATTATAATGTAATAGGTAAATTATTAATGTAACC
41185 GGTCT
196 GGTCT
* *
41190 AAATATACCAGTTTTTGAGAAAACATGTGTACAAAAAGTATCGACACAAATAAAAAAAGTGTCGA
1 AAATATACCGGTTTTTGAGAAAACAGGTGTACAAAAAGTATCGACACAAATAAAAAAAGTGTCGA
* * *
41255 TACATCTTGTCAAGATTGTATTTTAAAAACCAAGTGCACAACAAAGTGTCGAT-C--CT-GAA-A
66 TACATCTTGTCCAGATTGTATTTTAAAAACCAAGTGCACAACAAAGTGTCGATACATTTAAAACA
**
41315 A----C-AT--------CA---AAAAACATAATTATAATGTAATAGGTGTATTATTAATGTAACC
131 AGTGTCGATCCCGAAAACATCGAAAAACATAATTATAATGTAATAGGTAAATTATTAATGTAACC
41364 GGTCT
196 GGTCT
** * *
41369 AAATATATAGGTTTTTGAGAAAACATGTGTACAAAAAGTATCGACACAAATAAAAAAAGTGTTGA
1 AAATATACCGGTTTTTGAGAAAACAGGTGTACAAAAAGTATCGACACAAATAAAAAAAGTGTCGA
* * * *
41434 TACATCTTGTCCATATTCTATTTTAAAAACAAAGTGCACAACAAAGTGTCAATACATTTAAAACA
66 TACATCTTGTCCAGATTGTATTTTAAAAACCAAGTGCACAACAAAGTGTCGATACATTTAAAACA
41499 AGTGTCGATCCCGAAAACATCGAAAAACATAATTATAATGTAATAGGTAAATTATTAATGTAACC
131 AGTGTCGATCCCGAAAACATCGAAAAACATAATTATAATGTAATAGGTAAATTATTAATGTAACC
41564 GGTCT
196 GGTCT
* *
41569 AAATATACCAGTTTTTGAGAAAATAGGTGTACAAAAAGTATCGACACAAATAAAAAAAGTGTCGA
1 AAATATACCGGTTTTTGAGAAAACAGGTGTACAAAAAGTATCGACACAAATAAAAAAAGTGTCGA
* *
41634 TACATCTTGTCCAGATTGTATTTTAAAAACCAAGTGCACAACAAAGTGTCGATATATTTAAAATA
66 TACATCTTGTCCAGATTGTATTTTAAAAACCAAGTGCACAACAAAGTGTCGATACATTTAAAACA
*
41699 AGTGTCGATCCCGAAAACATCGAAAAACATAATTATAATGTAATAAGTAAATTATTAATGTAACC
131 AGTGTCGATCCCGAAAACATCGAAAAACATAATTATAATGTAATAGGTAAATTATTAATGTAACC
41764 GGTCT
196 GGTCT
* *
41769 AAATATACCGGTTTTTGAGAAAACAGGTGTATAAAAAGTATCG--ACAAA-AAAAAAAGTGTTGA
1 AAATATACCGGTTTTTGAGAAAACAGGTGTACAAAAAGTATCGACACAAATAAAAAAAGTGTCGA
41831 TACATCTTGTCCAGATTGTATTTTAAAAACCAAGTGCACAACAAAGTGTCGATACATTTAAAACA
66 TACATCTTGTCCAGATTGTATTTTAAAAACCAAGTGCACAACAAAGTGTCGATACATTTAAAACA
*
41896 AGTGTCGATCCCGAAAACATC-AAAAAGCATAATTATAATGTAATAGGTATATTATTAATGTAAC
131 AGTGTCGATCCCGAAAACATCGAAAAA-CATAATTATAATGTAATAGGTAAATTATTAATGTAAC
*
41960 TGGTCT
195 CGGTCT
* **
41966 AAATATACCGGTTTTTGAGAAAACATGTGTACAAAAAGTATCGACACAAATAAAAAAAAGTGTTA
1 AAATATACCGGTTTTTGAGAAAACAGGTGTACAAAAAGTATCGACACAAAT-AAAAAAAGTGTCG
42031 ATACATCTTGTCCAGATTGTATTTTAAAAACCAAGTGCACAACAAAGTGTCGATACATTTAAAAC
65 ATACATCTTGTCCAGATTGTATTTTAAAAACCAAGTGCACAACAAAGTGTCGATACATTTAAAAC
*
42096 AAGTGTCGATCCCGAAAACATCGAAAAGCATAATTATAATGTAATAGGTAAATTATTAATGTAAC
130 AAGTGTCGATCCCGAAAACATCGAAAAACATAATTATAATGTAATAGGTAAATTATTAATGTAAC
*
42161 CAGTCT
195 CGGTCT
* * *
42167 AAATATACCGATTTTTGAGAAAACAGGTGTACAAAAAGTATCGACATAAATAAAAAAAAGTGGCG
1 AAATATACCGGTTTTTGAGAAAACAGGTGTACAAAAAGTATCGACACAAAT-AAAAAAAGTGTCG
*
42232 ATACATCTTGTCCAGATTGTATTTTAAAAATCAAGTGCACAACAAAGTGTCGATACATTTAAAAC
65 ATACATCTTGTCCAGATTGTATTTTAAAAACCAAGTGCACAACAAAGTGTCGATACATTTAAAAC
*
42297 AAGTGTCGATCCCGAAAATATCGAAAAACATAATTATAATGTAATAGGTAAATTATTAATGTAAC
130 AAGTGTCGATCCCGAAAACATCGAAAAACATAATTATAATGTAATAGGTAAATTATTAATGTAAC
42362 CGGTCT
195 CGGTCT
* *
42368 AAATATACCGGTTTTTGAGAAAACAAGTTTACAAAAAGTATCGACACAAATAAAAAAAGTGTCGA
1 AAATATACCGGTTTTTGAGAAAACAGGTGTACAAAAAGTATCGACACAAATAAAAAAAGTGTCGA
* *
42433 TACATCTTGTCCATATTGTATTTTAAAAACCAAGTGCACAACAAAGTGTCGATACATTTATAACA
66 TACATCTTGTCCAGATTGTATTTTAAAAACCAAGTGCACAACAAAGTGTCGATACATTTAAAACA
* * *
42498 AGTATCAATCCCGAAAACATCGAAAAATATAATTATAA
131 AGTGTCGATCCCGAAAACATCGAAAAACATAATTATAA
42536 CCAAATGTCT
Statistics
Matches: 1432, Mismatches: 87, Indels: 55
0.91 0.06 0.03
Matches are distributed among these distances:
179 154 0.11
180 1 0.00
182 3 0.00
183 2 0.00
184 2 0.00
188 1 0.00
189 2 0.00
190 2 0.00
191 1 0.00
195 2 0.00
196 7 0.00
197 181 0.13
198 5 0.00
199 6 0.00
200 634 0.44
201 425 0.30
202 4 0.00
ACGTcount: A:0.44, C:0.14, G:0.14, T:0.28
Consensus pattern (200 bp):
AAATATACCGGTTTTTGAGAAAACAGGTGTACAAAAAGTATCGACACAAATAAAAAAAGTGTCGA
TACATCTTGTCCAGATTGTATTTTAAAAACCAAGTGCACAACAAAGTGTCGATACATTTAAAACA
AGTGTCGATCCCGAAAACATCGAAAAACATAATTATAATGTAATAGGTAAATTATTAATGTAACC
GGTCT
Found at i:41343 original size:179 final size:179
Alignment explanation
Indices: 41122--41483 Score: 600
Period size: 179 Copynumber: 2.0 Consensus size: 179
41112 TTAAAACAAT
** *
41122 TGTCGATCCCGAAAACATTGAAAAACATAATTATAATGTAATAGGTAAATTATTAATGTAACTGG
1 TGTCGATCCCGAAAACATCAAAAAACATAATTATAATGTAATAGGTAAATTATTAATGTAACCGG
41187 TCTAAATATACCA-GTTTTTGAGAAAACATGTGTACAAAAAGTATCGACACAAATAAAAAAAGTG
66 TCTAAATATA-CAGGTTTTTGAGAAAACATGTGTACAAAAAGTATCGACACAAATAAAAAAAGTG
* *
41251 TCGATACATCTTGTCAAGATTGTATTTTAAAAACCAAGTGCACAACAAAG
130 TCGATACATCTTGTCAAGATTCTATTTTAAAAACAAAGTGCACAACAAAG
* **
41301 TGTCGATCCTGAAAACATCAAAAAACATAATTATAATGTAATAGGTGTATTATTAATGTAACCGG
1 TGTCGATCCCGAAAACATCAAAAAACATAATTATAATGTAATAGGTAAATTATTAATGTAACCGG
*
41366 TCTAAATATATAGGTTTTTGAGAAAACATGTGTACAAAAAGTATCGACACAAATAAAAAAAGTGT
66 TCTAAATATACAGGTTTTTGAGAAAACATGTGTACAAAAAGTATCGACACAAATAAAAAAAGTGT
* * *
41431 TGATACATCTTGTCCATATTCTATTTTAAAAACAAAGTGCACAACAAAG
131 CGATACATCTTGTCAAGATTCTATTTTAAAAACAAAGTGCACAACAAAG
41480 TGTC
1 TGTC
41484 AATACATTTA
Statistics
Matches: 170, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
178 1 0.01
179 169 0.99
ACGTcount: A:0.43, C:0.13, G:0.14, T:0.29
Consensus pattern (179 bp):
TGTCGATCCCGAAAACATCAAAAAACATAATTATAATGTAATAGGTAAATTATTAATGTAACCGG
TCTAAATATACAGGTTTTTGAGAAAACATGTGTACAAAAAGTATCGACACAAATAAAAAAAGTGT
CGATACATCTTGTCAAGATTCTATTTTAAAAACAAAGTGCACAACAAAG
Found at i:45691 original size:86 final size:87
Alignment explanation
Indices: 45491--45739 Score: 437
Period size: 86 Copynumber: 2.9 Consensus size: 87
45481 AAATAGGTCA
45491 ATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTT
1 ATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTT
*
45556 CTGGTTAAATGCCTATTTTATT
66 CCGGTTAAATGCCTATTTTATT
** *
45578 ATATAAGTACTACCTATTACATTATATAAGCGCTACCTAATATGTTACTGTACTTGATAA-ATTT
1 ATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTT
45642 CCGGTTAAATGCCTATTTTATT
66 CCGGTTAAATGCCTATTTTATT
* *
45664 ATATAAACGCTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTGCTTGATAATATTT
1 ATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTT
45729 CCGGTTAAATG
66 CCGGTTAAATG
45740 ATATAATATA
Statistics
Matches: 152, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
86 80 0.53
87 72 0.47
ACGTcount: A:0.32, C:0.16, G:0.12, T:0.41
Consensus pattern (87 bp):
ATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTT
CCGGTTAAATGCCTATTTTATT
Found at i:45711 original size:23 final size:23
Alignment explanation
Indices: 45661--45705 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
45651 TGCCTATTTT
*
45661 ATTATATAAACGCTACCTATTAC
1 ATTATATAAACGCTACCTAATAC
*
45684 ATTATATAAGCGCTACCTAATA
1 ATTATATAAACGCTACCTAATA
45706 TGTTATTGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.40, C:0.20, G:0.07, T:0.33
Consensus pattern (23 bp):
ATTATATAAACGCTACCTAATAC
Found at i:47521 original size:21 final size:22
Alignment explanation
Indices: 47475--47523 Score: 66
Period size: 20 Copynumber: 2.3 Consensus size: 22
47465 CTATGTATTT
* *
47475 TTTTATTAAATTTATGTTTGTG
1 TTTTATTAAATTAATGTTTGCG
47497 -TTTATT-AATTAATGTTTGCG
1 TTTTATTAAATTAATGTTTGCG
47517 TTTTATT
1 TTTTATT
47524 TTTCCATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 12 0.50
21 12 0.50
ACGTcount: A:0.22, C:0.02, G:0.12, T:0.63
Consensus pattern (22 bp):
TTTTATTAAATTAATGTTTGCG
Found at i:48343 original size:17 final size:16
Alignment explanation
Indices: 48303--48362 Score: 70
Period size: 15 Copynumber: 3.8 Consensus size: 16
48293 AAATCCGGGT
*
48303 ATTCGGGTACCCG-AC
1 ATTCGGGTACCCGAAA
*
48318 ATACGGGTACCCGTAAA
1 ATTCGGGTACCCG-AAA
48335 ATTCGGGTACCCGAAA
1 ATTCGGGTACCCGAAA
*
48351 A-CCGGGTACCCG
1 ATTCGGGTACCCG
48363 GATCATCCGG
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
15 22 0.56
16 4 0.10
17 13 0.33
ACGTcount: A:0.27, C:0.30, G:0.27, T:0.17
Consensus pattern (16 bp):
ATTCGGGTACCCGAAA
Found at i:48374 original size:32 final size:32
Alignment explanation
Indices: 48306--48374 Score: 77
Period size: 32 Copynumber: 2.2 Consensus size: 32
48296 TCCGGGTATT
* * *
48306 CGGGTACCCGACATACGGGTACCCGTAAAATT
1 CGGGTACCCGACAAACGGGTACCCGGAAAATC
**
48338 CGGGTACCCGA-AAACCGGGTACCCGGATCATC
1 CGGGTACCCGACAAA-CGGGTACCCGGAAAATC
48370 CGGGT
1 CGGGT
48375 CGGGACACGG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
31 2 0.06
32 29 0.94
ACGTcount: A:0.25, C:0.30, G:0.29, T:0.16
Consensus pattern (32 bp):
CGGGTACCCGACAAACGGGTACCCGGAAAATC
Found at i:48432 original size:15 final size:16
Alignment explanation
Indices: 48412--48441 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
48402 CCGGATGATC
48412 CGGATACCC-GATTTT
1 CGGATACCCGGATTTT
48427 CGGATACCCGGATTT
1 CGGATACCCGGATTT
48442 GCACACCCCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.20, C:0.27, G:0.23, T:0.30
Consensus pattern (16 bp):
CGGATACCCGGATTTT
Found at i:48653 original size:22 final size:21
Alignment explanation
Indices: 48602--48655 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
48592 TCAATAAAAA
**
48602 TTATATAAAATATTTTTATTT
1 TTATATAAAATATTAATATTT
*
48623 TTATCTAAAATATTAATATTT
1 TTATATAAAATATTAATATTT
*
48644 TTTTAATAAAAT
1 TTAT-ATAAAAT
48656 TAATAAAGCG
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
21 21 0.78
22 6 0.22
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.56
Consensus pattern (21 bp):
TTATATAAAATATTAATATTT
Found at i:49110 original size:16 final size:18
Alignment explanation
Indices: 49089--49124 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
49079 AAAAAATATA
49089 TTTTAA-TTATT-TATCT
1 TTTTAATTTATTATATCT
49105 TTTTAATTTATTATATCT
1 TTTTAATTTATTATATCT
49123 TT
1 TT
49125 GTCATTCTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 6 0.33
17 5 0.28
18 7 0.39
ACGTcount: A:0.25, C:0.06, G:0.00, T:0.69
Consensus pattern (18 bp):
TTTTAATTTATTATATCT
Found at i:49279 original size:32 final size:32
Alignment explanation
Indices: 49243--49343 Score: 97
Period size: 32 Copynumber: 3.2 Consensus size: 32
49233 GCAATCATCA
49243 ATATTTTTTAGTATATTGTATCATTGAATATG
1 ATATTTTTTAGTATATTGTATCATTGAATATG
* * *
49275 ATA--TTTTA--CT-TT-TACCATATGCAATCATCA
1 ATATTTTTTAGTATATTGTATCAT-TG-AAT-AT-G
49305 ATATTTTTTAGTATATTGTATCATTGAATATG
1 ATATTTTTTAGTATATTGTATCATTGAATATG
49337 ATATTTT
1 ATATTTT
49344 ACTTTTACTA
Statistics
Matches: 53, Mismatches: 6, Indels: 20
0.67 0.08 0.25
Matches are distributed among these distances:
26 5 0.09
27 4 0.08
28 4 0.08
29 2 0.04
30 8 0.15
32 15 0.28
33 2 0.04
34 4 0.08
35 4 0.08
36 5 0.09
ACGTcount: A:0.32, C:0.08, G:0.09, T:0.51
Consensus pattern (32 bp):
ATATTTTTTAGTATATTGTATCATTGAATATG
Found at i:49288 original size:36 final size:36
Alignment explanation
Indices: 49248--49350 Score: 84
Period size: 36 Copynumber: 3.1 Consensus size: 36
49238 CATCAATATT
49248 TTTTAGTATATTGTATCATTGAATATGATATTTTAC
1 TTTTAGTATATTGTATCATTGAATATGATATTTTAC
** * *
49284 TTTTACCATA-TG---C----AATCATCA-ATATT--
1 TTTTAGTATATTGTATCATTGAAT-ATGATATTTTAC
49310 TTTTAGTATATTGTATCATTGAATATGATATTTTAC
1 TTTTAGTATATTGTATCATTGAATATGATATTTTAC
49346 TTTTA
1 TTTTA
49351 CTATTTTAAA
Statistics
Matches: 47, Mismatches: 8, Indels: 24
0.59 0.10 0.30
Matches are distributed among these distances:
26 8 0.17
27 2 0.04
28 7 0.15
29 3 0.06
30 1 0.02
32 1 0.02
33 3 0.06
34 7 0.15
35 2 0.04
36 13 0.28
ACGTcount: A:0.31, C:0.09, G:0.09, T:0.51
Consensus pattern (36 bp):
TTTTAGTATATTGTATCATTGAATATGATATTTTAC
Found at i:49297 original size:62 final size:62
Alignment explanation
Indices: 49229--49351 Score: 246
Period size: 62 Copynumber: 2.0 Consensus size: 62
49219 ATATTTTATT
49229 ATATGCAATCATCAATATTTTTTAGTATATTGTATCATTGAATATGATATTTTACTTTTACC
1 ATATGCAATCATCAATATTTTTTAGTATATTGTATCATTGAATATGATATTTTACTTTTACC
49291 ATATGCAATCATCAATATTTTTTAGTATATTGTATCATTGAATATGATATTTTACTTTTAC
1 ATATGCAATCATCAATATTTTTTAGTATATTGTATCATTGAATATGATATTTTACTTTTAC
49352 TATTTTAAAT
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 61 1.00
ACGTcount: A:0.33, C:0.11, G:0.08, T:0.49
Consensus pattern (62 bp):
ATATGCAATCATCAATATTTTTTAGTATATTGTATCATTGAATATGATATTTTACTTTTACC
Found at i:49564 original size:17 final size:17
Alignment explanation
Indices: 49542--49589 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
49532 TAACCGGTTT
49542 CGGTTTTAAAAAAAAAC
1 CGGTTTTAAAAAAAAAC
***
49559 CGGTTTTTTTAAAAAAC
1 CGGTTTTAAAAAAAAAC
*
49576 CGGTTATAAAAAAA
1 CGGTTTTAAAAAAA
49590 CCGATTTTAA
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.48, C:0.10, G:0.12, T:0.29
Consensus pattern (17 bp):
CGGTTTTAAAAAAAAAC
Found at i:49794 original size:21 final size:21
Alignment explanation
Indices: 49770--49822 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
49760 ACACTTAGGG
49770 AACCGATTCCCTATGAGAGGA
1 AACCGATTCCCTATGAGAGGA
*
49791 AACCGATTCCCTATGAGAGGG
1 AACCGATTCCCTATGAGAGGA
*
49812 TACCGATTCCC
1 AACCGATTCCC
49823 CCACGCTCCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (21 bp):
AACCGATTCCCTATGAGAGGA
Found at i:50039 original size:13 final size:13
Alignment explanation
Indices: 50018--50072 Score: 58
Period size: 13 Copynumber: 4.2 Consensus size: 13
50008 AAGTTCGATA
*
50018 AATTCAAATACTT
1 AATTGAAATACTT
50031 AATTGAAATACTT
1 AATTGAAATACTT
* *
50044 AATT-AACTCAACAT
1 AATTGAAAT--ACTT
50058 AATTGAAATACTT
1 AATTGAAATACTT
50071 AA
1 AA
50073 ATACTTCCAA
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
12 3 0.09
13 21 0.62
14 7 0.21
15 3 0.09
ACGTcount: A:0.49, C:0.13, G:0.04, T:0.35
Consensus pattern (13 bp):
AATTGAAATACTT
Found at i:50154 original size:32 final size:33
Alignment explanation
Indices: 50058--50156 Score: 155
Period size: 33 Copynumber: 3.0 Consensus size: 33
50048 AACTCAACAT
* * **
50058 AATTGAAATACTTAAATACTTCCAAGTTTAATA
1 AATTCAAATACTTAAAAACTTCCAAGTTCGATA
50091 AATTCAAATACTTAAAAACTTCCAAGTTCGATA
1 AATTCAAATACTTAAAAACTTCCAAGTTCGATA
50124 AATTCAAATACTTAAAAACTT-CAAGTTCGATA
1 AATTCAAATACTTAAAAACTTCCAAGTTCGATA
50156 A
1 A
50157 TTGAAACAAA
Statistics
Matches: 62, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
32 12 0.19
33 50 0.81
ACGTcount: A:0.46, C:0.15, G:0.06, T:0.32
Consensus pattern (33 bp):
AATTCAAATACTTAAAAACTTCCAAGTTCGATA
Found at i:50175 original size:21 final size:21
Alignment explanation
Indices: 50151--50190 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
50141 ACTTCAAGTT
50151 CGATAATTGAAACAAAGTTTA
1 CGATAATTGAAACAAAGTTTA
*
50172 CGATAATTGAAATAAAGTT
1 CGATAATTGAAACAAAGTT
50191 ATAAAATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.47, C:0.07, G:0.15, T:0.30
Consensus pattern (21 bp):
CGATAATTGAAACAAAGTTTA
Found at i:52510 original size:11 final size:12
Alignment explanation
Indices: 52489--52528 Score: 53
Period size: 12 Copynumber: 3.1 Consensus size: 12
52479 TCCGGATAAA
52489 AACCGGTTTTTT
1 AACCGGTTTTTT
52501 AACCGGTTTTTTT
1 AACCGG-TTTTTT
52514 CAAACCGGTTTTTT
1 --AACCGGTTTTTT
52528 A
1 A
52529 TCTGGTAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
12 7 0.28
13 6 0.24
14 6 0.24
15 6 0.24
ACGTcount: A:0.20, C:0.17, G:0.15, T:0.47
Consensus pattern (12 bp):
AACCGGTTTTTT
Found at i:52519 original size:15 final size:14
Alignment explanation
Indices: 52488--52527 Score: 57
Period size: 15 Copynumber: 2.9 Consensus size: 14
52478 TTCCGGATAA
52488 AAACCGG-TTTTTT
1 AAACCGGTTTTTTT
52501 -AACCGGTTTTTTT
1 AAACCGGTTTTTTT
52514 CAAACCGGTTTTTT
1 -AAACCGGTTTTTT
52528 ATCTGGTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 6 0.25
13 6 0.25
15 12 0.50
ACGTcount: A:0.20, C:0.17, G:0.15, T:0.47
Consensus pattern (14 bp):
AAACCGGTTTTTTT
Found at i:60549 original size:25 final size:25
Alignment explanation
Indices: 60521--60572 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
60511 ACTCTTAGAA
*
60521 AGTTAAATAGATAAGGATTACTACT
1 AGTTAAATAGATAAGGATAACTACT
60546 AGTTAAATAGATAAGGATAACTACT
1 AGTTAAATAGATAAGGATAACTACT
60571 AG
1 AG
60573 GTAGTTTGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.46, C:0.08, G:0.17, T:0.29
Consensus pattern (25 bp):
AGTTAAATAGATAAGGATAACTACT
Found at i:66206 original size:2 final size:2
Alignment explanation
Indices: 66199--66237 Score: 60
Period size: 2 Copynumber: 18.5 Consensus size: 2
66189 AGACAAACTT
66199 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GTA GA GTA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA G-A GA G-A GA G
66238 TAACGATTAA
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
2 31 0.89
3 4 0.11
ACGTcount: A:0.46, C:0.00, G:0.49, T:0.05
Consensus pattern (2 bp):
GA
Found at i:68961 original size:95 final size:95
Alignment explanation
Indices: 68832--69020 Score: 333
Period size: 95 Copynumber: 2.0 Consensus size: 95
68822 ACCAAAAGAT
* * *
68832 CAAAAGTCCTCGAGTGAAACATTCCAACCGCTATTTATAGCCCACTCAAAGATGTTAAAGTAACG
1 CAAAAGTCCTCAAATGAAACATTCCAACCCCTATTTATAGCCCACTCAAAGATGTTAAAGTAACG
68897 GTTATAGAAGGGCGTGACTAAACATGTAAC
66 GTTATAGAAGGGCGTGACTAAACATGTAAC
* *
68927 CAAAAGTTCTCAAATGAAACATTTCAACCCCTATTTATAGCCCACTCAAAGATGTTAAAGTAACG
1 CAAAAGTCCTCAAATGAAACATTCCAACCCCTATTTATAGCCCACTCAAAGATGTTAAAGTAACG
68992 GTTATAGAAGGGCGTGACTAAACATGTAA
66 GTTATAGAAGGGCGTGACTAAACATGTAA
69021 TAAGTTATTA
Statistics
Matches: 89, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
95 89 1.00
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.24
Consensus pattern (95 bp):
CAAAAGTCCTCAAATGAAACATTCCAACCCCTATTTATAGCCCACTCAAAGATGTTAAAGTAACG
GTTATAGAAGGGCGTGACTAAACATGTAAC
Found at i:75234 original size:7 final size:7
Alignment explanation
Indices: 75222--75259 Score: 53
Period size: 7 Copynumber: 5.6 Consensus size: 7
75212 ATCTTACTAC
75222 ATAAATT
1 ATAAATT
75229 ATAAATT
1 ATAAATT
75236 CAT-AATT
1 -ATAAATT
75243 -TAAATT
1 ATAAATT
75249 ATAAATT
1 ATAAATT
75256 ATAA
1 ATAA
75260 TAAAAACAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
5 1 0.04
6 4 0.14
7 21 0.75
8 2 0.07
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (7 bp):
ATAAATT
Found at i:75248 original size:20 final size:19
Alignment explanation
Indices: 75223--75260 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 19
75213 TCTTACTACA
75223 TAAATTATAAATTCATAATT
1 TAAATTATAAATT-ATAATT
75243 TAAATTATAAATTATAAT
1 TAAATTATAAATTATAAT
75261 AAAAACAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (19 bp):
TAAATTATAAATTATAATT
Found at i:77034 original size:68 final size:68
Alignment explanation
Indices: 76922--78077 Score: 1871
Period size: 68 Copynumber: 17.0 Consensus size: 68
76912 CAAGATTAAT
** *
76922 GGCCTAACTGTGCATTTGACAGAAATATGTCAATCATGCTAGTTAGATGAAAGGCTAAGTGCCTT
1 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTT
76987 TGA
66 TGA
* **
76990 GGCCTAACTGTGCATTTGAAAGAAAAATGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTT
1 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTT
77055 TGA
66 TGA
* *
77058 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCTAGTTAGATGAAAGGCTAAGTGTCTT
1 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTT
77123 TGA
66 TGA
* * * * * * *
77126 GGCCTAAATATGAATTTGATAGAAATGCGTCAATCATGCCTGTTAGATGAAAGGCTAAGTGCCTT
1 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTT
77191 TGA
66 TGA
* * * *
77194 AGTCTAACTGTGCATTTGATAGAAAGGTGTCAATCATGCCAATTAGATGAAAGGCTAAGTGCCTT
1 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTT
77259 TGA
66 TGA
* * *
77262 GGCCTAACTGTTCATTTGACAGAAAGGTGTCAATCATACCAGTTAGATGAAAGGCTAAGTGTCTT
1 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTT
77327 TGA
66 TGA
*
77330 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAGTCATGCCAGTTAGATGAAAGGCTAAGTGCCTT
1 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTT
77395 TGA
66 TGA
* *
77398 GGCCTAACTGTGCATTTGATAGAAAGGTGTCAATCATACCAGTTAGATGAAAGGCTAAGTGCCTT
1 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTT
77463 TGA
66 TGA
* *
77466 GACCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCATT
1 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTT
77531 TGA
66 TGA
* * * *
77534 GGCCTAACTGTACATTTGACAGAAATGTGTTAATCATGCCAGTTAGATGAAAGGCTAAGTGTCTT
1 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTT
77599 TGA
66 TGA
**
77602 GGCCTAACTGTGCATTTGACAGAAATATGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTT
1 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTT
77667 TGA
66 TGA
77670 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTT
1 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTT
77735 TGA
66 TGA
** * *
77738 GGAATAACTGTGCATTTGACAAAAAGATGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTT
1 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTT
77803 TGA
66 TGA
* *
77806 GGCCTAACTGTGCATTTGACAGAAAGATGTCAATCATGGCAGTTAGATGAAAGGCTAAGTGCCTT
1 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTT
77871 TGA
66 TGA
* * * * *
77874 GGCTTAACTATGCATTTGACAGAAATGTGTCAATCATGACAGTTAGATGAAAGGCTAAGTGCCTA
1 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTT
*
77939 TAA
66 TGA
* * *
77942 GGCCTAACTGTGCATTTGACAGAAAGATGTCAATCATGCCACTTAGATGAAAGGCTAACTGCCTT
1 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTT
78007 TGA
66 TGA
*
78010 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATTCCAGTTAGATGAAAGGCTAAGTGCCTT
1 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTT
78075 TGA
66 TGA
78078 TAGAAAGGTG
Statistics
Matches: 1004, Mismatches: 84, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
68 1004 1.00
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.28
Consensus pattern (68 bp):
GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTT
TGA
Found at i:77272 original size:204 final size:204
Alignment explanation
Indices: 76922--78649 Score: 2675
Period size: 204 Copynumber: 8.6 Consensus size: 204
76912 CAAGATTAAT
** *
76922 GGCCTAACTGTGCATTTGACAGAAATATGTCAATCATGCTAGTTAGATGAAAGGCTAAGTGCCTT
1 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTT
* **
76987 TGAGGCCTAACTGTGCATTTGAAAGAAAAATGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGC
66 TGAGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGC
*
77052 CTTTGAGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCTAGTTAGATGAAAGGCTAAG
131 CTTTGAGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAG
*
77117 TGTCTTTGA
196 TGCCTTTGA
* * * * * * *
77126 GGCCTAAATATGAATTTGATAGAAATGCGTCAATCATGCCTGTTAGATGAAAGGCTAAGTGCCTT
1 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTT
* * * *
77191 TGAAGTCTAACTGTGCATTTGATAGAAAGGTGTCAATCATGCCAATTAGATGAAAGGCTAAGTGC
66 TGAGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGC
* *
77256 CTTTGAGGCCTAACTGTTCATTTGACAGAAAGGTGTCAATCATACCAGTTAGATGAAAGGCTAAG
131 CTTTGAGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAG
*
77321 TGTCTTTGA
196 TGCCTTTGA
*
77330 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAGTCATGCCAGTTAGATGAAAGGCTAAGTGCCTT
1 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTT
* *
77395 TGAGGCCTAACTGTGCATTTGATAGAAAGGTGTCAATCATACCAGTTAGATGAAAGGCTAAGTGC
66 TGAGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGC
*
77460 CTTTGAGACCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAG
131 CTTTGAGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAG
*
77525 TGCATTTGA
196 TGCCTTTGA
* * * *
77534 GGCCTAACTGTACATTTGACAGAAATGTGTTAATCATGCCAGTTAGATGAAAGGCTAAGTGTCTT
1 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTT
**
77599 TGAGGCCTAACTGTGCATTTGACAGAAATATGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGC
66 TGAGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGC
77664 CTTTGAGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAG
131 CTTTGAGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAG
77729 TGCCTTTGA
196 TGCCTTTGA
** * *
77738 GGAATAACTGTGCATTTGACAAAAAGATGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTT
1 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTT
* *
77803 TGAGGCCTAACTGTGCATTTGACAGAAAGATGTCAATCATGGCAGTTAGATGAAAGGCTAAGTGC
66 TGAGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGC
* * * *
77868 CTTTGAGGCTTAACTATGCATTTGACAGAAATGTGTCAATCATGACAGTTAGATGAAAGGCTAAG
131 CTTTGAGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAG
* *
77933 TGCCTATAA
196 TGCCTTTGA
* * *
77942 GGCCTAACTGTGCATTTGACAGAAAGATGTCAATCATGCCACTTAGATGAAAGGCTAACTGCCTT
1 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTT
*
78007 TGAGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATTCCAGTTAGATGAAAGGCTAA--G-
66 TGAGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGC
*
78069 ---T---GCCT---T-TG-A--T---AGAAAGGTGTCAATCATGCCAGTTAGATTAAAGGCTAAG
131 CTTTGAGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAG
78118 TGCCTTTGA
196 TGCCTTTGA
78127 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTT
1 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTT
* * *
78192 TGAGGACTAACTATGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGT
66 TGAGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGC
* * *
78257 CTTTGAGGCCTAATTATGCATTTGATAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAG
131 CTTTGAGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAG
78322 TGCCTTTGA
196 TGCCTTTGA
* *
78331 GGCCTAACTGTGCATTTGACAGAAAGATGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCAT
1 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTT
* * * *
78396 TGAGGCCTAATTGTGCATTGGACAGAAAGGTGGCAATCATGCCAGCTAGATGAAAGGCTAAGTGC
66 TGAGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGC
* * * * * *
78461 CTATGAGGCCTAAGTGTGCATTTGACATAAAGGTGTCAATCATGTCAGATAGATAAAAGGCTAAG
131 CTTTGAGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAG
78526 TGCCTTTGA
196 TGCCTTTGA
* * *
78535 GGCCTAACTGTGCATTTGACAAAAAGGTGTCAATCATGCCAGTTAGATTAAAGGCTAAGTGACTT
1 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTT
*
78600 TGAGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGA
66 TGAGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGA
78650 CGAACGATTA
Statistics
Matches: 1396, Mismatches: 109, Indels: 38
0.90 0.07 0.02
Matches are distributed among these distances:
185 163 0.12
187 1 0.00
188 1 0.00
190 1 0.00
191 3 0.00
192 1 0.00
194 4 0.00
195 3 0.00
197 1 0.00
198 3 0.00
199 1 0.00
201 1 0.00
202 1 0.00
204 1212 0.87
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (204 bp):
GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTT
TGAGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGC
CTTTGAGGCCTAACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAG
TGCCTTTGA
Found at i:78095 original size:117 final size:117
Alignment explanation
Indices: 77951--78194 Score: 425
Period size: 117 Copynumber: 2.1 Consensus size: 117
77941 AGGCCTAACT
*
77951 GTGCATTTGACAGAAAGATGTCAATCATGCCACTTAGATGAAAGGCTAACTGCCTTTGAGGCCTA
1 GTGCCTTTGACAGAAAGATGTCAATCATGCCACTTAGATGAAAGGCTAACTGCCTTTGAGGCCTA
*
78016 ACTGTGCATTTGACAGAAAGGTGTCAATCATTCCAGTTAGATGAAAGGCTAA
66 ACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAA
* * * * *
78068 GTGCCTTTGATAGAAAGGTGTCAATCATGCCAGTTAGATTAAAGGCTAAGTGCCTTTGAGGCCTA
1 GTGCCTTTGACAGAAAGATGTCAATCATGCCACTTAGATGAAAGGCTAACTGCCTTTGAGGCCTA
78133 ACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAA
66 ACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAA
78185 GTGCCTTTGA
1 GTGCCTTTGA
78195 GGACTAACTA
Statistics
Matches: 120, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
117 120 1.00
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (117 bp):
GTGCCTTTGACAGAAAGATGTCAATCATGCCACTTAGATGAAAGGCTAACTGCCTTTGAGGCCTA
ACTGTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAA
Found at i:78101 original size:49 final size:49
Alignment explanation
Indices: 78019--78126 Score: 180
Period size: 49 Copynumber: 2.2 Consensus size: 49
78009 AGGCCTAACT
* *
78019 GTGCATTTGACAGAAAGGTGTCAATCATTCCAGTTAGATGAAAGGCTAA
1 GTGCCTTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAA
* *
78068 GTGCCTTTGATAGAAAGGTGTCAATCATGCCAGTTAGATTAAAGGCTAA
1 GTGCCTTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAA
78117 GTGCCTTTGA
1 GTGCCTTTGA
78127 GGCCTAACTG
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 55 1.00
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (49 bp):
GTGCCTTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAA
Found at i:78212 original size:185 final size:185
Alignment explanation
Indices: 77888--78262 Score: 633
Period size: 185 Copynumber: 2.0 Consensus size: 185
77878 TAACTATGCA
*
77888 TTTGACAGAAATGTGTCAATCATGACAGTTAGATGAAAGGCTAAGTGCCTATAAGGCCTAACTGT
1 TTTGACAGAAAGGTGTCAATCATGACAGTTAGATGAAAGGCTAAGTGCCTATAAGGCCTAACTGT
*
77953 GCATTTGACAGAAAGATGTCAATCATGCCACTTAGATGAAAGGCTAACTGCCTTTGAGGCCTAAC
66 GCATTTGACAGAAAGATGTCAATCATGCCACTTAGATGAAAGGCTAACTGCCTTTGAGGACTAAC
* *
78018 TGTGCATTTGACAGAAAGGTGTCAATCATTCCAGTTAGATGAAAGGCTAAGTGCC
131 TATGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCC
* * * * *
78073 TTTGATAGAAAGGTGTCAATCATGCCAGTTAGATTAAAGGCTAAGTGCCTTTGAGGCCTAACTGT
1 TTTGACAGAAAGGTGTCAATCATGACAGTTAGATGAAAGGCTAAGTGCCTATAAGGCCTAACTGT
* * *
78138 GCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGACTAAC
66 GCATTTGACAGAAAGATGTCAATCATGCCACTTAGATGAAAGGCTAACTGCCTTTGAGGACTAAC
*
78203 TATGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGTC
131 TATGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCC
78258 TTTGA
1 TTTGA
78263 GGCCTAATTA
Statistics
Matches: 177, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
185 177 1.00
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (185 bp):
TTTGACAGAAAGGTGTCAATCATGACAGTTAGATGAAAGGCTAAGTGCCTATAAGGCCTAACTGT
GCATTTGACAGAAAGATGTCAATCATGCCACTTAGATGAAAGGCTAACTGCCTTTGAGGACTAAC
TATGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCC
Found at i:78671 original size:68 final size:68
Alignment explanation
Indices: 78068--78649 Score: 939
Period size: 68 Copynumber: 8.6 Consensus size: 68
78058 GAAAGGCTAA
* * *
78068 GTGCCTTTGATAGAAAGGTGTCAATCATGCCAGTTAGATTAAAGGCTAAGTGCCTTTGAGGCCTA
1 GTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCCTA
78133 ACT
66 ACT
*
78136 GTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGACTA
1 GTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCCTA
78201 ACT
66 ACT
* *
78204 ATGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGTCTTTGAGGCCTA
1 GTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCCTA
*
78269 ATT
66 ACT
* *
78272 ATGCATTTGATAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCCTA
1 GTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCCTA
78337 ACT
66 ACT
* *
78340 GTGCATTTGACAGAAAGATGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCATTGAGGCCTA
1 GTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCCTA
*
78405 ATT
66 ACT
* * * *
78408 GTGCATTGGACAGAAAGGTGGCAATCATGCCAGCTAGATGAAAGGCTAAGTGCCTATGAGGCCTA
1 GTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCCTA
*
78473 AGT
66 ACT
* * * *
78476 GTGCATTTGACATAAAGGTGTCAATCATGTCAGATAGATAAAAGGCTAAGTGCCTTTGAGGCCTA
1 GTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCCTA
78541 ACT
66 ACT
* * *
78544 GTGCATTTGACAAAAAGGTGTCAATCATGCCAGTTAGATTAAAGGCTAAGTGACTTTGAGGCCTA
1 GTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCCTA
78609 ACT
66 ACT
*
78612 GTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGA
1 GTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGA
78650 CGAACGATTA
Statistics
Matches: 476, Mismatches: 38, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
68 476 1.00
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27
Consensus pattern (68 bp):
GTGCATTTGACAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCCTA
ACT
Found at i:78751 original size:81 final size:81
Alignment explanation
Indices: 78603--78824 Score: 284
Period size: 81 Copynumber: 2.7 Consensus size: 81
78593 GTGACTTTGA
* * * * *
78603 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGACGAACGATTATATACCGT
1 GGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAATACCGT
78668 TGAGTAAAAGATTAAT
66 TGAGTAAAAGATTAAT
* *
78684 GGCCTAGCTGTGTATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAATACTGT
1 GGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAATACCGT
*
78749 TGAGTAAGAGATTAAT
66 TGAGTAAAAGATTAAT
* * * * * * * *
78765 AGCCTAGCTTTGCAATTGGCA-AGAAGGTGTCAATCATGCAAGTTAGGTGAAAGGCTAAAT
1 GGCCTAGCTGTGCATTTGGCAGA-AAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAAT
78825 CTCTTTAGGT
Statistics
Matches: 123, Mismatches: 17, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
80 1 0.01
81 122 0.99
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (81 bp):
GGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAATACCGT
TGAGTAAAAGATTAAT
Found at i:81365 original size:42 final size:42
Alignment explanation
Indices: 81301--81622 Score: 263
Period size: 42 Copynumber: 7.9 Consensus size: 42
81291 GAAAAATTAT
* * *
81301 GACGTTTATTACAAAAATGCCACTAAGGTGCATGGCTTTCGC
1 GACGTTTATTACAAAAACGCCACTAAGGTGCATGACTATCGC
* *
81343 GCCGTTTATTACAAAAACGCCACTAAGGTGCATGACTATCAC
1 GACGTTTATTACAAAAACGCCACTAAGGTGCATGACTATCGC
* ****
81385 GACGTTT-TTCACAAAAATGATGTTAAGGTGCATGACTATCGC
1 GACGTTTATT-ACAAAAACGCCACTAAGGTGCATGACTATCGC
* *
81427 GACATTTATTACAAAAACACCACTAAGGTGCATGACTATCGC
1 GACGTTTATTACAAAAACGCCACTAAGGTGCATGACTATCGC
* * * * *
81469 GACGTTTATTA-AAAAAAGGC-C----G-CCATGACTATTGT
1 GACGTTTATTACAAAAACGCCACTAAGGTGCATGACTATCGC
* * * ** *
81504 GACATTTA-T-CAAAAATGCCGCTAAGGAACATGACTATTGC
1 GACGTTTATTACAAAAACGCCACTAAGGTGCATGACTATCGC
* * * * *
81544 GGCGTTTAGTACAAAAATGCCACTAAGGTGCATGAATATTGC
1 GACGTTTATTACAAAAACGCCACTAAGGTGCATGACTATCGC
* * * *
81586 GGCG-TTAATA-AAAAACGCCACTAGGGTGTATGACTAT
1 GACGTTTATTACAAAAACGCCACTAAGGTGCATGACTAT
81623 TGCTTCTAAG
Statistics
Matches: 227, Mismatches: 42, Indels: 24
0.77 0.14 0.08
Matches are distributed among these distances:
34 8 0.04
35 18 0.08
36 1 0.00
39 1 0.00
40 41 0.18
41 14 0.06
42 142 0.63
43 2 0.01
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (42 bp):
GACGTTTATTACAAAAACGCCACTAAGGTGCATGACTATCGC
Found at i:81540 original size:75 final size:77
Alignment explanation
Indices: 81415--81560 Score: 179
Period size: 75 Copynumber: 1.9 Consensus size: 77
81405 TGTTAAGGTG
** *
81415 CATGACTATCGCGACATTTATTACAAAAACACCACTAAGGTGCATGACTATCGCGACGTTTATTA
1 CATGACTATCGCGACATTTATTACAAAAACACCACTAAGGAACATGACTATCGCGACGTTTAGTA
81480 AAAAAAGGCCGC
66 AAAAAAGGCCGC
* * ** * * *
81492 CATGACTATTGTGACATTTA-T-CAAAAATGCCGCTAAGGAACATGACTATTGCGGCGTTTAGTA
1 CATGACTATCGCGACATTTATTACAAAAACACCACTAAGGAACATGACTATCGCGACGTTTAGTA
*
81555 CAAAAA
66 AAAAAA
81561 TGCCACTAAG
Statistics
Matches: 58, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
75 39 0.67
76 1 0.02
77 18 0.31
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Consensus pattern (77 bp):
CATGACTATCGCGACATTTATTACAAAAACACCACTAAGGAACATGACTATCGCGACGTTTAGTA
AAAAAAGGCCGC
Found at i:81624 original size:40 final size:42
Alignment explanation
Indices: 81492--81625 Score: 132
Period size: 40 Copynumber: 3.3 Consensus size: 42
81482 AAAAGGCCGC
* * * * * **
81492 CATGACTATTGTGACATTT-AT-CAAAAATGCCGCTAAGGAA
1 CATGACTATTGCGGCGTTTAATACAAAAACGCCACTAAGGTG
* *
81532 CATGACTATTGCGGCGTTTAGTACAAAAATGCCACTAAGGTG
1 CATGACTATTGCGGCGTTTAATACAAAAACGCCACTAAGGTG
* *
81574 CATGAATATTGCGGCG-TTAATA-AAAAACGCCACTAGGGTG
1 CATGACTATTGCGGCGTTTAATACAAAAACGCCACTAAGGTG
*
81614 TATGACTATTGC
1 CATGACTATTGC
81626 TTCTAAGGTG
Statistics
Matches: 79, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
40 42 0.53
41 6 0.08
42 31 0.39
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.27
Consensus pattern (42 bp):
CATGACTATTGCGGCGTTTAATACAAAAACGCCACTAAGGTG
Found at i:81701 original size:29 final size:29
Alignment explanation
Indices: 81663--81719 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
81653 TTATCACAAA
*
81663 AATGCTGCTAAGGTGCATGACTATTGCGG
1 AATGCCGCTAAGGTGCATGACTATTGCGG
*
81692 AATGCCGCTATGGTGCATGACTATTGCG
1 AATGCCGCTAAGGTGCATGACTATTGCG
81720 ACATTTATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (29 bp):
AATGCCGCTAAGGTGCATGACTATTGCGG
Found at i:84620 original size:21 final size:21
Alignment explanation
Indices: 84594--84668 Score: 68
Period size: 21 Copynumber: 3.6 Consensus size: 21
84584 TTTTTGTTTA
*
84594 TTCATTT-ATTATCTTATTTTT
1 TTCATTTGATT-TATTATTTTT
84615 TTCATTTGATTTATTATTTTT
1 TTCATTTGATTTATTATTTTT
*
84636 TT-ATTTTCATTT-TTAATGTTTT
1 TTCA-TTTGATTTATT-AT-TTTT
84658 TTC-TTTGATTT
1 TTCATTTGATTT
84669 TTTTAATATT
Statistics
Matches: 46, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
20 3 0.07
21 34 0.74
22 9 0.20
ACGTcount: A:0.17, C:0.07, G:0.04, T:0.72
Consensus pattern (21 bp):
TTCATTTGATTTATTATTTTT
Found at i:84642 original size:26 final size:26
Alignment explanation
Indices: 84597--84647 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
84587 TTGTTTATTC
84597 ATTTATTATCTTATTTTTTTCATTTG
1 ATTTATTATCTTATTTTTTTCATTTG
*
84623 ATTTATTAT-TTTTTTATTTTCATTT
1 ATTTATTATCTTATTT-TTTTCATTT
84648 TTAATGTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.20, C:0.06, G:0.02, T:0.73
Consensus pattern (26 bp):
ATTTATTATCTTATTTTTTTCATTTG
Found at i:84693 original size:46 final size:43
Alignment explanation
Indices: 84611--84696 Score: 102
Period size: 43 Copynumber: 1.9 Consensus size: 43
84601 ATTATCTTAT
**
84611 TTTTTTCATTTGATTTATTATTTTTTTATTTTCATTTTTAATG
1 TTTTTTCATTTGATTTATTATTTTTTTATTAACATTTTTAATG
*
84654 TTTTTTC-TTTGATTTTTTTAATATTTTTTATCTAACATTTTTA
1 TTTTTTCATTTGA-TTTATT-AT-TTTTTTAT-TAACATTTTTA
84697 CTCTTTTAGA
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
42 5 0.14
43 12 0.33
44 2 0.06
45 8 0.22
46 9 0.25
ACGTcount: A:0.20, C:0.06, G:0.03, T:0.71
Consensus pattern (43 bp):
TTTTTTCATTTGATTTATTATTTTTTTATTAACATTTTTAATG
Found at i:87411 original size:95 final size:95
Alignment explanation
Indices: 87246--87501 Score: 318
Period size: 95 Copynumber: 2.7 Consensus size: 95
87236 ATTATAATAT
* *
87246 ATATACAATAAAGCTTGAGCTGTCCCTCTAAAGCAATTGGTTAAACGCCCCGGCTTTATGGATAA
1 ATATACAATAAAGCTTGAGCTATCCCTCTAGAGCAATTGGTTAAACGCCCCGGCTTTATGGATAA
* * *
87311 GATTCAGCTAACCTGATAAAAGTGATTATA
66 AATTCAGCTAACCTAATAAAAGCGATTATA
* * *
87341 ATATACAATAAAGCTTGAGTTATCCCTCTAGAGCAATTGGTTAAACGCTCTGGCTTTAT-GAGTA
1 ATATACAATAAAGCTTGAGCTATCCCTCTAGAGCAATTGGTTAAACGCCCCGGCTTTATGGA-TA
* *
87405 AAATTCAGCTAGCCTAATAAAGGCGATTATA
65 AAATTCAGCTAACCTAATAAAAGCGATTATA
* * * * *
87436 ATAT-CTATACAATGATATTAAGCTATCCCTCTAGAGCAATTGGTTAAACACCCCGACTTTATGG
1 ATATACAATA-AA-G--CTTGAGCTATCCCTCTAGAGCAATTGGTTAAACGCCCCGGCTTTATGG
87500 AT
62 AT
87502 TCAGCTAGCC
Statistics
Matches: 137, Mismatches: 18, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
94 6 0.04
95 88 0.64
96 1 0.01
98 40 0.29
99 2 0.01
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (95 bp):
ATATACAATAAAGCTTGAGCTATCCCTCTAGAGCAATTGGTTAAACGCCCCGGCTTTATGGATAA
AATTCAGCTAACCTAATAAAAGCGATTATA
Found at i:88985 original size:29 final size:29
Alignment explanation
Indices: 88885--88986 Score: 177
Period size: 29 Copynumber: 3.5 Consensus size: 29
88875 TCTTGAGACA
* *
88885 GTTTTCCTTGAAATAAAATCTTTGAATAT
1 GTTTTCCTTGAAACAAAATCTTTGAATCT
*
88914 GTTTTCCTTGAATCAAAATCTTTGAATCT
1 GTTTTCCTTGAAACAAAATCTTTGAATCT
88943 GTTTTCCTTGAAACAAAATCTTTGAATCT
1 GTTTTCCTTGAAACAAAATCTTTGAATCT
88972 GTTTTCCTTGAAACA
1 GTTTTCCTTGAAACA
88987 GATTTCGTCT
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 69 1.00
ACGTcount: A:0.30, C:0.16, G:0.11, T:0.43
Consensus pattern (29 bp):
GTTTTCCTTGAAACAAAATCTTTGAATCT
Found at i:89070 original size:34 final size:36
Alignment explanation
Indices: 88972--89303 Score: 279
Period size: 37 Copynumber: 9.3 Consensus size: 36
88962 CTTTGAATCT
* * * *
88972 GTTTTCCTTGAAACAGATTTCGTCTCCCTTGAAGACA
1 GTTTCCCTTGAAACAAATTTTGTCTCTCTTG-AGACA
** * * *
89009 GTTTCTTTTGGAACTAAGTTTTGTCTCTCTTTAGACA
1 GTTTCCCTTGAAAC-AAATTTTGTCTCTCTTGAGACA
* ** *
89046 ATTTATCTTGAAACAAA-TTT-TCTCTCTGGAGACA
1 GTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACA
*
89080 GTTTCCCTTGAATCAAATTTTTGTCTCTCTTGAGACA
1 GTTTCCCTTGAAACAAA-TTTTGTCTCTCTTGAGACA
* *
89117 GTTTCCCTTGAAACAAA------ATCT-TTGA-ATA
1 GTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACA
* * * *
89145 TGTTTTCCTTTAAACAAATTTCGTCTCTCTCGAGACA
1 -GTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACA
* ** * *
89182 ATTTCTTTTGGAACTAAGTTTTGTCTCTCTTGAGACA
1 GTTTCCCTTGAAAC-AAATTTTGTCTCTCTTGAGACA
* *
89219 GTTTCTCTTGAAACAAATTTTATCTCTCTTGAGACA
1 GTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACA
*
89255 GTTTCCATTGAAACAAAGTTTTGTCTCTCTTGAGACA
1 GTTTCCCTTGAAACAAA-TTTTGTCTCTCTTGAGACA
*
89292 GTTTCACTTGAA
1 GTTTCCCTTGAA
89304 GCACAAATCT
Statistics
Matches: 232, Mismatches: 48, Indels: 30
0.75 0.15 0.10
Matches are distributed among these distances:
28 2 0.01
29 19 0.08
30 3 0.01
34 25 0.11
35 6 0.03
36 51 0.22
37 114 0.49
38 12 0.05
ACGTcount: A:0.26, C:0.20, G:0.14, T:0.41
Consensus pattern (36 bp):
GTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACA
Found at i:89238 original size:173 final size:176
Alignment explanation
Indices: 88943--89336 Score: 582
Period size: 175 Copynumber: 2.2 Consensus size: 176
88933 CTTTGAATCT
* * * *
88943 GTTTTCCTTGAAACAAAATCTTTGAATCTGTTTTCCTTGAAACAGATTTCGTCTCCCTTGAAGAC
1 GTTTCCCTTGAAACAAAATCTTTGAATATGTTTTCCTTGAAACAAATTTCGTCTCCCTCGAAGAC
* *
89008 AGTTTCTTTTGGAACTAAGTTTTGTCTCTCTTTAGACAATTTATCTTGAAACAAA-TTT-TCTCT
66 AATTTCTTTTGGAACTAAGTTTTGTCTCTCTTGAGACAATTTATCTTGAAACAAATTTTATCTCT
* * *
89071 CTGGAGACAGTTTCCCTTGAATCAAATTTTTGTCTCTCTTGAGACA
131 CTGGAGACAGTTTCCATTGAAACAAAGTTTTGTCTCTCTTGAGACA
* *
89117 GTTTCCCTTGAAACAAAATCTTTGAATATGTTTTCCTTTAAACAAATTTCGTCTCTCTCG-AGAC
1 GTTTCCCTTGAAACAAAATCTTTGAATATGTTTTCCTTGAAACAAATTTCGTCTCCCTCGAAGAC
* *
89181 AATTTCTTTTGGAACTAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAATTTTATCTCT
66 AATTTCTTTTGGAACTAAGTTTTGTCTCTCTTGAGACAATTTATCTTGAAACAAATTTTATCTCT
*
89246 CTTGAGACAGTTTCCATTGAAACAAAGTTTTGTCTCTCTTGAGACA
131 CTGGAGACAGTTTCCATTGAAACAAAGTTTTGTCTCTCTTGAGACA
* *
89292 GTTTCACTTGAAGCACAAATCTTTGAA-AT-TGTTTCTCTTGAAACA
1 GTTTCCCTTGAAACA-AAATCTTTGAATATGT-TTTC-CTTGAAACA
89337 CAAAAACACC
Statistics
Matches: 198, Mismatches: 17, Indels: 8
0.89 0.08 0.04
Matches are distributed among these distances:
173 55 0.28
174 58 0.29
175 66 0.33
176 19 0.10
ACGTcount: A:0.27, C:0.19, G:0.13, T:0.41
Consensus pattern (176 bp):
GTTTCCCTTGAAACAAAATCTTTGAATATGTTTTCCTTGAAACAAATTTCGTCTCCCTCGAAGAC
AATTTCTTTTGGAACTAAGTTTTGTCTCTCTTGAGACAATTTATCTTGAAACAAATTTTATCTCT
CTGGAGACAGTTTCCATTGAAACAAAGTTTTGTCTCTCTTGAGACA
Found at i:89275 original size:73 final size:72
Alignment explanation
Indices: 89148--89303 Score: 213
Period size: 73 Copynumber: 2.1 Consensus size: 72
89138 TTGAATATGT
* * ** * *
89148 TTTCCTTTAAACAAATTTCGTCTCTCTCGAGACAATTTCTTTTGGAACTAAGTTTTGTCTCTCTT
1 TTTCCTTGAAACAAATTTCATCTCTCTCGAGACAATTTCCATTGAAACAAAGTTTTGTCTCTCTT
89213 GAGACAG
66 GAGACAG
* * *
89220 TTTCTCTTGAAACAAATTTTATCTCTCTTGAGACAGTTTCCATTGAAACAAAGTTTTGTCTCTCT
1 TTTC-CTTGAAACAAATTTCATCTCTCTCGAGACAATTTCCATTGAAACAAAGTTTTGTCTCTCT
89285 TGAGACAG
65 TGAGACAG
89293 TTTCACTTGAA
1 TTTC-CTTGAA
89304 GCACAAATCT
Statistics
Matches: 73, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
72 4 0.05
73 69 0.95
ACGTcount: A:0.26, C:0.20, G:0.13, T:0.41
Consensus pattern (72 bp):
TTTCCTTGAAACAAATTTCATCTCTCTCGAGACAATTTCCATTGAAACAAAGTTTTGTCTCTCTT
GAGACAG
Found at i:89620 original size:36 final size:35
Alignment explanation
Indices: 89552--89644 Score: 118
Period size: 36 Copynumber: 2.6 Consensus size: 35
89542 GCCTCCCTAT
* *
89552 AAATAGTTTCTCTTGAA-ACATAAAAAATCCTTTG-
1 AAAT-GTTTCTCTTGAACACAAAAAAAAACCTTTGA
*
89586 AAATCGTTTCGCTTGAAACACAAAAAAAAACCTTTGA
1 AAAT-GTTTCTCTTG-AACACAAAAAAAAACCTTTGA
89623 AAATGTTTCTCTTGAACACAAA
1 AAATGTTTCTCTTGAACACAAA
89645 GGCCTTCGAG
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
34 13 0.25
35 10 0.20
36 24 0.47
37 4 0.08
ACGTcount: A:0.43, C:0.17, G:0.10, T:0.30
Consensus pattern (35 bp):
AAATGTTTCTCTTGAACACAAAAAAAAACCTTTGA
Found at i:89621 original size:271 final size:268
Alignment explanation
Indices: 89108--89638 Score: 684
Period size: 271 Copynumber: 2.0 Consensus size: 268
89098 TTTTGTCTCT
* * *
89108 CTTGAGACAGTTTCCCTTGAAACAAAATCTTTGAATATGTTTTCCTTTAAACAAATTTCGTCTCT
1 CTTGAGACAGTTTCCCTTCAAACAAAATCTTTGAATATATTTTCCTTTAAACAAATTTCGTCTCC
89173 CTCGAGACAATTTCTTTTGGAACTAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAATT
66 CTCGAGACAATTTCTTTTGGAACTAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAA--
* * * *
89238 TTATCTCTCTTGAGACAGTTTCCATTGAAACAAAGTTTTGTCTCTCTTGAGACAGTTTCACTTGA
129 -TATCTCTCTTGAGACAGTTTCCATTGAAACAAAATTTTGCCTCCCTTGAAACAGTTTCACTTGA
* * * * * *
89303 AGCACAAATCTTTGAAATTGTTTCTCTTGAAACACAAAAACACCTTTG-AAATAGTTTTTCTTGA
193 AACAAAAATCTTTGAAATCGTTTCGCTTGAAACACAAAAAAACCTTTGAAAAT-GTTTCTCTTGA
89367 AAGATAAAAGAC
257 AAGATAAAAGAC
89379 CTTGAGACAGTTTCCCTTCAAACAAAATCTTTGAATATATTTT-CTTTGAAACAAATTTCGTCTC
1 CTTGAGACAGTTTCCCTTCAAACAAAATCTTTGAATATATTTTCCTTT-AAACAAATTTCGTCTC
* ** *
89443 CCTTGAGACTGTTTCTTTTGGAACTAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACACCA
65 CCTCGAGACAATTTCTTTTGGAACTAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACA-AA
* * *
89508 -A-C-CT-TTGA-ATATGTTTCTC-TTGAAACAAAATTTTGCCTCCCTAT-AAATAGTTTCTCTT
129 TATCTCTCTTGAGACA-GTTTC-CATTGAAACAAAATTTTGCCTCCCT-TGAAACAGTTTCACTT
89566 GAAACATAAAAAATCCTTTGAAATCGTTTCGCTTGAAACACAAAAAAAAACCTTTGAAAATGTTT
191 GAAAC---AAAAAT-CTTTGAAATCGTTTCGCTTGAAACAC--AAAAAAACCTTTGAAAATGTTT
89631 CTCTTGAA
250 CTCTTGAA
89639 CACAAAGGCC
Statistics
Matches: 228, Mismatches: 20, Indels: 24
0.84 0.07 0.09
Matches are distributed among these distances:
264 2 0.01
265 44 0.19
266 4 0.02
267 1 0.00
268 6 0.03
269 24 0.11
270 4 0.02
271 138 0.61
272 5 0.02
ACGTcount: A:0.31, C:0.19, G:0.12, T:0.37
Consensus pattern (268 bp):
CTTGAGACAGTTTCCCTTCAAACAAAATCTTTGAATATATTTTCCTTTAAACAAATTTCGTCTCC
CTCGAGACAATTTCTTTTGGAACTAAGTTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAATA
TCTCTCTTGAGACAGTTTCCATTGAAACAAAATTTTGCCTCCCTTGAAACAGTTTCACTTGAAAC
AAAAATCTTTGAAATCGTTTCGCTTGAAACACAAAAAAACCTTTGAAAATGTTTCTCTTGAAAGA
TAAAAGAC
Found at i:89856 original size:11 final size:11
Alignment explanation
Indices: 89840--89865 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
89830 CAGCTCGATG
89840 ACACCTCAATC
1 ACACCTCAATC
89851 ACACCTCAATC
1 ACACCTCAATC
89862 ACAC
1 ACAC
89866 TACTGTCCGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.46, G:0.00, T:0.15
Consensus pattern (11 bp):
ACACCTCAATC
Found at i:90663 original size:21 final size:21
Alignment explanation
Indices: 90637--90911 Score: 246
Period size: 21 Copynumber: 13.2 Consensus size: 21
90627 GTTTCCAGAT
*
90637 TCGCAACGCGAACTTCGACTA
1 TCGCAATGCGAACTTCGACTA
90658 TCGCAATGCGAACTTCGACTA
1 TCGCAATGCGAACTTCGACTA
* * *
90679 TCACAATGCAAACTTTGACTA
1 TCGCAATGCGAACTTCGACTA
** *
90700 TCGCAATATGAAATTCGACTA
1 TCGCAATGCGAACTTCGACTA
*
90721 TCGCAATGCGAACTTGGACTA
1 TCGCAATGCGAACTTCGACTA
*
90742 TCGCAATGCGATA-GTCGACTA
1 TCGCAATGCGA-ACTTCGACTA
* *
90763 TCGCAATGCGAACTTGGGCTA
1 TCGCAATGCGAACTTCGACTA
*
90784 TCGCAATGCGAACTTGGACTA
1 TCGCAATGCGAACTTCGACTA
*
90805 TCGCAATGCGAA-TAT-GTA-AA
1 TCGCAATGCGAACT-TCG-ACTA
* *
90825 TCGCAATGCGATA-GTCGGCTA
1 TCGCAATGCGA-ACTTCGACTA
*
90846 TCGCAATGCGAA-TAT-GTA-AA
1 TCGCAATGCGAACT-TCG-ACTA
*
90866 TCGCAATGCGATA-GTCGAC-A
1 TCGCAATGCGA-ACTTCGACTA
* *
90886 TCGTAATGCGAACTTGGACTA
1 TCGCAATGCGAACTTCGACTA
90907 TCGCA
1 TCGCA
90912 TTGTGATTTA
Statistics
Matches: 208, Mismatches: 32, Indels: 28
0.78 0.12 0.10
Matches are distributed among these distances:
19 1 0.00
20 47 0.23
21 159 0.76
22 1 0.00
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.24
Consensus pattern (21 bp):
TCGCAATGCGAACTTCGACTA
Found at i:90699 original size:42 final size:42
Alignment explanation
Indices: 90637--90911 Score: 278
Period size: 42 Copynumber: 6.6 Consensus size: 42
90627 GTTTCCAGAT
* *
90637 TCGCAACGCGAACTTCGACTATCGCAATGCGAACTTCGACTA
1 TCGCAATGCGAACTTGGACTATCGCAATGCGAACTTCGACTA
* * * ** *
90679 TCACAATGCAAACTTTGACTATCGCAATATGAAATTCGACTA
1 TCGCAATGCGAACTTGGACTATCGCAATGCGAACTTCGACTA
*
90721 TCGCAATGCGAACTTGGACTATCGCAATGCGATA-GTCGACTA
1 TCGCAATGCGAACTTGGACTATCGCAATGCGA-ACTTCGACTA
* *
90763 TCGCAATGCGAACTTGGGCTATCGCAATGCGAACTTGGACTA
1 TCGCAATGCGAACTTGGACTATCGCAATGCGAACTTCGACTA
* * * *
90805 TCGCAATGCGAA-TATGTA-AATCGCAATGCGATA-GTCGGCTA
1 TCGCAATGCGAACT-TGGACTATCGCAATGCGA-ACTTCGACTA
* * *
90846 TCGCAATGCGAA-TATGTA-AATCGCAATGCGATA-GTCGAC-A
1 TCGCAATGCGAACT-TGGACTATCGCAATGCGA-ACTTCGACTA
*
90886 TCGTAATGCGAACTTGGACTATCGCA
1 TCGCAATGCGAACTTGGACTATCGCA
90912 TTGTGATTTA
Statistics
Matches: 201, Mismatches: 26, Indels: 13
0.84 0.11 0.05
Matches are distributed among these distances:
40 15 0.07
41 64 0.32
42 121 0.60
43 1 0.00
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.24
Consensus pattern (42 bp):
TCGCAATGCGAACTTGGACTATCGCAATGCGAACTTCGACTA
Found at i:90829 original size:20 final size:20
Alignment explanation
Indices: 90804--90876 Score: 94
Period size: 20 Copynumber: 3.6 Consensus size: 20
90794 AACTTGGACT
90804 ATCGCAATGCGAATATGTAA
1 ATCGCAATGCGAATATGTAA
***
90824 ATCGCAATGCG-ATAGTCGGCT
1 ATCGCAATGCGAATA-T-GTAA
90845 ATCGCAATGCGAATATGTAA
1 ATCGCAATGCGAATATGTAA
90865 ATCGCAATGCGA
1 ATCGCAATGCGA
90877 TAGTCGACAT
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
19 3 0.07
20 25 0.57
21 13 0.30
22 3 0.07
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.23
Consensus pattern (20 bp):
ATCGCAATGCGAATATGTAA
Found at i:90952 original size:21 final size:21
Alignment explanation
Indices: 90926--91029 Score: 122
Period size: 21 Copynumber: 5.0 Consensus size: 21
90916 GATTTACATA
*
90926 TTCGCATTGCGATAGTCCAAG
1 TTCGCATTGCGATAGTCCAAC
* *
90947 TTCGCATTGTGATAGT-CGAC
1 TTCGCATTGCGATAGTCCAAC
*
90967 TATCGCATTGCGATAGTCCAAG
1 T-TCGCATTGCGATAGTCCAAC
* *
90989 TTCGCATTGCGATAAT-CGAC
1 TTCGCATTGCGATAGTCCAAC
91009 TATCGCATTGCGATAGTCCAA
1 T-TCGCATTGCGATAGTCCAA
91030 AATCGCAACG
Statistics
Matches: 68, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
20 6 0.09
21 57 0.84
22 5 0.07
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (21 bp):
TTCGCATTGCGATAGTCCAAC
Found at i:91036 original size:42 final size:42
Alignment explanation
Indices: 90927--91029 Score: 188
Period size: 42 Copynumber: 2.5 Consensus size: 42
90917 ATTTACATAT
* *
90927 TCGCATTGCGATAGTCCAAGTTCGCATTGTGATAGTCGACTA
1 TCGCATTGCGATAGTCCAAGTTCGCATTGCGATAATCGACTA
90969 TCGCATTGCGATAGTCCAAGTTCGCATTGCGATAATCGACTA
1 TCGCATTGCGATAGTCCAAGTTCGCATTGCGATAATCGACTA
91011 TCGCATTGCGATAGTCCAA
1 TCGCATTGCGATAGTCCAA
91030 AATCGCAACG
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 59 1.00
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.29
Consensus pattern (42 bp):
TCGCATTGCGATAGTCCAAGTTCGCATTGCGATAATCGACTA
Found at i:91791 original size:21 final size:21
Alignment explanation
Indices: 91758--91901 Score: 103
Period size: 21 Copynumber: 7.1 Consensus size: 21
91748 CGTTGCGATT
91758 TTGGAAT--ATCGCAACGAAC
1 TTGGAATAAATCGCAACGAAC
91777 TTGGAATAAATCGCAACGCGAAC
1 TTGGAATAAATCGCAA--CGAAC
* * *
91800 TTCGACT--ATCG----G-AT
1 TTGGAATAAATCGCAACGAAC
*
91814 TTGGAATAAATCGCAACGAAT
1 TTGGAATAAATCGCAACGAAC
91835 TTGGAATAAATCGCAACGCGAAC
1 TTGGAATAAATCGCAA--CGAAC
* *
91858 TTCGACT--ATCGCAACGAAC
1 TTGGAATAAATCGCAACGAAC
91877 TTGGAATAAATCGCAATGCGAAC
1 TTGGAATAAATCGCAA--CGAAC
91900 TT
1 TT
91902 AGACTATCGC
Statistics
Matches: 98, Mismatches: 10, Indels: 30
0.71 0.07 0.22
Matches are distributed among these distances:
14 6 0.06
15 1 0.01
16 4 0.04
19 17 0.17
20 1 0.01
21 43 0.44
23 26 0.27
ACGTcount: A:0.36, C:0.21, G:0.20, T:0.23
Consensus pattern (21 bp):
TTGGAATAAATCGCAACGAAC
Found at i:91845 original size:58 final size:56
Alignment explanation
Indices: 91757--91868 Score: 197
Period size: 58 Copynumber: 2.0 Consensus size: 56
91747 TCGTTGCGAT
91757 TTTGGAATATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTCGACTATCGGA
1 TTTGGAATATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTCGACTATCGGA
*
91813 TTTGGAATAAATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTCGACTATCG
1 TTTGGAAT--ATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTCGACTATCG
91869 CAACGAACTT
Statistics
Matches: 53, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
56 8 0.15
58 45 0.85
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.24
Consensus pattern (56 bp):
TTTGGAATATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTCGACTATCGGA
Found at i:91882 original size:42 final size:42
Alignment explanation
Indices: 91823--91913 Score: 155
Period size: 42 Copynumber: 2.2 Consensus size: 42
91813 TTTGGAATAA
* *
91823 ATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTCGACT
1 ATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTAGACT
*
91865 ATCGCAACGAACTTGGAATAAATCGCAATGCGAACTTAGACT
1 ATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTAGACT
91907 ATCGCAA
1 ATCGCAA
91914 TGCGAATATG
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.37, C:0.23, G:0.19, T:0.21
Consensus pattern (42 bp):
ATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTAGACT
Found at i:91910 original size:21 final size:21
Alignment explanation
Indices: 91844--91919 Score: 84
Period size: 21 Copynumber: 3.6 Consensus size: 21
91834 TTTGGAATAA
* *
91844 ATCGCAACGCGAACTTCGACT
1 ATCGCAATGCGAACTTAGACT
* *
91865 ATCGCAA--CGAACTTGGAAT
1 ATCGCAATGCGAACTTAGACT
91884 AAATCGCAATGCGAACTTAGACT
1 --ATCGCAATGCGAACTTAGACT
91907 ATCGCAATGCGAA
1 ATCGCAATGCGAA
91920 TATGTAAATC
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
19 10 0.21
21 27 0.57
23 10 0.21
ACGTcount: A:0.36, C:0.25, G:0.20, T:0.20
Consensus pattern (21 bp):
ATCGCAATGCGAACTTAGACT
Found at i:93218 original size:21 final size:21
Alignment explanation
Indices: 93192--93266 Score: 68
Period size: 21 Copynumber: 3.6 Consensus size: 21
93182 TTTTTGTTTA
*
93192 TTCATTT-ATTATCTTATTTTT
1 TTCATTTGATT-TATTATTTTT
93213 TTCATTTGATTTATTATTTTT
1 TTCATTTGATTTATTATTTTT
*
93234 TT-ATTTTCATTT-TTAATGTTTT
1 TTCA-TTTGATTTATT-AT-TTTT
93256 TT-ATTTGATTT
1 TTCATTTGATTT
93267 TTTTAATATT
Statistics
Matches: 47, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
20 3 0.06
21 34 0.72
22 10 0.21
ACGTcount: A:0.19, C:0.05, G:0.04, T:0.72
Consensus pattern (21 bp):
TTCATTTGATTTATTATTTTT
Found at i:93240 original size:26 final size:26
Alignment explanation
Indices: 93195--93245 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
93185 TTGTTTATTC
93195 ATTTATTATCTTATTTTTTTCATTTG
1 ATTTATTATCTTATTTTTTTCATTTG
*
93221 ATTTATTAT-TTTTTTATTTTCATTT
1 ATTTATTATCTTATTT-TTTTCATTT
93246 TTAATGTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.20, C:0.06, G:0.02, T:0.73
Consensus pattern (26 bp):
ATTTATTATCTTATTTTTTTCATTTG
Found at i:93248 original size:23 final size:24
Alignment explanation
Indices: 93196--93282 Score: 60
Period size: 26 Copynumber: 3.7 Consensus size: 24
93186 TGTTTATTCA
* *
93196 TTTATTATCTTATTT-TTTTCATTT
1 TTTATTATATTTTTTATTTTCA-TT
93220 GATTTATTAT-TTTTTTATTTTCATT
1 --TTTATTATATTTTTTATTTTCATT
* *
93245 TTTA--ATGTTTTTTA-TTTGATT
1 TTTATTATATTTTTTATTTTCATT
93266 TTT-TTAATATTTTTTAT
1 TTTATT-ATATTTTTTAT
93283 CTAACATTTT
Statistics
Matches: 52, Mismatches: 3, Indels: 14
0.75 0.04 0.20
Matches are distributed among these distances:
21 11 0.21
22 7 0.13
23 13 0.25
25 7 0.13
26 14 0.27
ACGTcount: A:0.20, C:0.03, G:0.03, T:0.74
Consensus pattern (24 bp):
TTTATTATATTTTTTATTTTCATT
Found at i:93268 original size:22 final size:21
Alignment explanation
Indices: 93207--93282 Score: 75
Period size: 21 Copynumber: 3.5 Consensus size: 21
93197 TTATTATCTT
*
93207 ATTTTTTTCATTTGATTTATT-
1 ATTTTTTT-ATTTGATTTTTTA
*
93228 ATTTTTTTATTTTCA-TTTTTA
1 ATTTTTTTA-TTTGATTTTTTA
93249 ATGTTTTTTATTTGATTTTTTTA
1 AT-TTTTTTATTTGA-TTTTTTA
93272 ATATTTTTTAT
1 AT-TTTTTTAT
93283 CTAACATTTT
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
20 5 0.11
21 18 0.39
22 7 0.15
23 16 0.35
ACGTcount: A:0.20, C:0.03, G:0.04, T:0.74
Consensus pattern (21 bp):
ATTTTTTTATTTGATTTTTTA
Found at i:93292 original size:23 final size:23
Alignment explanation
Indices: 93241--93294 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
93231 TTTTTATTTT
* * *
93241 CATTTTTAATGTTTTTTATTTGA
1 CATTTTTAATATTTTTTATCTAA
**
93264 TTTTTTTAATATTTTTTATCTAA
1 CATTTTTAATATTTTTTATCTAA
93287 CATTTTTA
1 CATTTTTA
93295 CTCTTTTAGA
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.24, C:0.06, G:0.04, T:0.67
Consensus pattern (23 bp):
CATTTTTAATATTTTTTATCTAA
Found at i:93292 original size:46 final size:43
Alignment explanation
Indices: 93209--93294 Score: 102
Period size: 43 Copynumber: 1.9 Consensus size: 43
93199 ATTATCTTAT
**
93209 TTTTTTCATTTGATTTATTATTTTTTTATTTTCATTTTTAATG
1 TTTTTTCATTTGATTTATTATTTTTTTATTAACATTTTTAATG
*
93252 TTTTTT-ATTTGATTTTTTTAATATTTTTTATCTAACATTTTTA
1 TTTTTTCATTTGA-TTTATT-AT-TTTTTTAT-TAACATTTTTA
93295 CTCTTTTAGA
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
42 6 0.17
43 11 0.31
44 2 0.06
45 8 0.22
46 9 0.25
ACGTcount: A:0.21, C:0.05, G:0.03, T:0.71
Consensus pattern (43 bp):
TTTTTTCATTTGATTTATTATTTTTTTATTAACATTTTTAATG
Found at i:95138 original size:57 final size:62
Alignment explanation
Indices: 95047--95197 Score: 182
Period size: 57 Copynumber: 2.6 Consensus size: 62
95037 AAAGAGGTTT
*
95047 TATTTA-ATTTT-ATA-TATT-T-GAT-TTTAATTTTAATATTAATTTTTAAA-AAATTAA-A
1 TATTTATATTTTAATATTATTATAGATATTTAATTTTAATATTAATTTTTAAATAAA-AAATA
95102 TA-TTATATTTTAATA-T-TTATAGATA-TTAATTTTAATATTAATTTTTAAATAAAAAATA
1 TATTTATATTTTAATATTATTATAGATATTTAATTTTAATATTAATTTTTAAATAAAAAATA
* *
95160 TATTTTTTTTTTAATATTATTATAGATATTTAATTTTA
1 TATTTATATTTTAATATTATTATAGATATTTAATTTTA
95198 TATCATATAA
Statistics
Matches: 82, Mismatches: 3, Indels: 15
0.82 0.03 0.15
Matches are distributed among these distances:
54 3 0.04
55 9 0.11
56 5 0.06
57 29 0.35
58 6 0.07
59 11 0.13
60 1 0.01
61 9 0.11
62 9 0.11
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (62 bp):
TATTTATATTTTAATATTATTATAGATATTTAATTTTAATATTAATTTTTAAATAAAAAATA
Found at i:96055 original size:17 final size:17
Alignment explanation
Indices: 96033--96066 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
96023 GAAATATAAA
96033 ATAAAAAAAATTAAAAT
1 ATAAAAAAAATTAAAAT
* *
96050 ATAAAAGAATTTAAAAT
1 ATAAAAAAAATTAAAAT
96067 TTTCAAAAGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (17 bp):
ATAAAAAAAATTAAAAT
Found at i:108441 original size:19 final size:20
Alignment explanation
Indices: 108417--108454 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
108407 ACTACTATAT
*
108417 TACTTGCATCGA-TTGTGTA
1 TACTTGCATAGATTTGTGTA
108436 TACTTGCATAGATTTGTGT
1 TACTTGCATAGATTTGTGT
108455 GCCATAACAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.21, C:0.13, G:0.21, T:0.45
Consensus pattern (20 bp):
TACTTGCATAGATTTGTGTA
Found at i:108739 original size:21 final size:21
Alignment explanation
Indices: 108685--108741 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
108675 TTATTTCTAA
* *
108685 TACCAATATTACTCTTACCAG
1 TACCAGTATTACTATTACCAG
* * * *
108706 TATCGGTACTACTATTATCAG
1 TACCAGTATTACTATTACCAG
108727 TACCAGTATTACTAT
1 TACCAGTATTACTAT
108742 ATAGTATCAA
Statistics
Matches: 27, Mismatches: 9, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.32, C:0.23, G:0.09, T:0.37
Consensus pattern (21 bp):
TACCAGTATTACTATTACCAG
Found at i:110914 original size:60 final size:60
Alignment explanation
Indices: 110826--110972 Score: 179
Period size: 60 Copynumber: 2.5 Consensus size: 60
110816 AAAAAAGGGC
* * *
110826 AAAG-TACACAAATAGTTATCCGACTATAGGGCGTTGTTTTGTTGAGTCCTCCGACTATTA
1 AAAGTTACA-AAATAGTCATCCGACTATAGGGCGCTGCTTTGTTGAGTCCTCCGACTATTA
* * * **
110886 AAAGTTATAAAATAGTCATTCGATTATAGGGCGCTGCTTTGTTGAGTCCTTGGACTATTA
1 AAAGTTACAAAATAGTCATCCGACTATAGGGCGCTGCTTTGTTGAGTCCTCCGACTATTA
* * *
110946 AAAGTTACAAAATTGTCACCCGGCTAT
1 AAAGTTACAAAATAGTCATCCGACTAT
110973 TTATATGTTC
Statistics
Matches: 72, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
60 69 0.96
61 3 0.04
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (60 bp):
AAAGTTACAAAATAGTCATCCGACTATAGGGCGCTGCTTTGTTGAGTCCTCCGACTATTA
Found at i:111536 original size:19 final size:19
Alignment explanation
Indices: 111512--111565 Score: 54
Period size: 23 Copynumber: 2.6 Consensus size: 19
111502 TATTTTCTGA
111512 TTTTTTATTTTTGTTATTT
1 TTTTTTATTTTTGTTATTT
111531 TTTTTTACTTTCTTTTGTTATTT
1 TTTTTTA---T-TTTTGTTATTT
*
111554 TCTTTTTCTTTT
1 T-TTTTTATTTT
111566 CCTTTTCTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 9
0.74 0.03 0.23
Matches are distributed among these distances:
19 7 0.24
20 3 0.10
21 1 0.03
22 1 0.03
23 12 0.41
24 5 0.17
ACGTcount: A:0.07, C:0.07, G:0.04, T:0.81
Consensus pattern (19 bp):
TTTTTTATTTTTGTTATTT
Found at i:111550 original size:23 final size:23
Alignment explanation
Indices: 111520--111564 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
111510 GATTTTTTAT
111520 TTTTGTTATTTT-TTTTTACTTTC
1 TTTTGTTATTTTCTTTTT-CTTTC
111543 TTTTGTTATTTTCTTTTTCTTT
1 TTTTGTTATTTTCTTTTTCTTT
111565 TCCTTTTCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 16 0.76
24 5 0.24
ACGTcount: A:0.07, C:0.09, G:0.04, T:0.80
Consensus pattern (23 bp):
TTTTGTTATTTTCTTTTTCTTTC
Found at i:111588 original size:29 final size:29
Alignment explanation
Indices: 111525--111594 Score: 74
Period size: 28 Copynumber: 2.5 Consensus size: 29
111515 TTTATTTTTG
**
111525 TTATTTTT-TTTTACTTTCTTTTGTTATT
1 TTATTTTTCTTTTACTTTCTTTTGTTACA
* *
111553 TTCTTTTTCTTTTCCTTT-TCTTTGTTACA
1 TTATTTTTCTTTTACTTTCT-TTTGTTACA
111582 TTA-TTTTCTTTTA
1 TTATTTTTCTTTTA
111595 TTCTATCTTT
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
28 17 0.50
29 17 0.50
ACGTcount: A:0.10, C:0.13, G:0.03, T:0.74
Consensus pattern (29 bp):
TTATTTTTCTTTTACTTTCTTTTGTTACA
Found at i:112167 original size:18 final size:18
Alignment explanation
Indices: 112144--112178 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
112134 ATAATATGTG
112144 CATGTTGT-AGATTTAATT
1 CATGTTGTCA-ATTTAATT
112162 CATGTTGTCAATTTAAT
1 CATGTTGTCAATTTAAT
112179 CATTTTAAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 15 0.94
19 1 0.06
ACGTcount: A:0.29, C:0.09, G:0.14, T:0.49
Consensus pattern (18 bp):
CATGTTGTCAATTTAATT
Found at i:112703 original size:19 final size:17
Alignment explanation
Indices: 112665--112706 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
112655 GAGCTAATTT
*
112665 TATTTAAAATTAGAAAA
1 TATTTAAAATTAAAAAA
112682 TATTTAAAATTATAATAAA
1 TATTTAAAATTA-AA-AAA
112701 TATTTA
1 TATTTA
112707 CAATAAAACT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 12 0.55
18 1 0.05
19 9 0.41
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (17 bp):
TATTTAAAATTAAAAAA
Found at i:115244 original size:38 final size:36
Alignment explanation
Indices: 115155--115237 Score: 87
Period size: 38 Copynumber: 2.2 Consensus size: 36
115145 ATTAATATAG
* * *
115155 TATAGTTTTTGAAAA-TATTTTTTAAAAAATATAATA
1 TATAG-TTTTGAAAACGATTTTTGAAAATATATAATA
*
115191 TATAGATTTTAGAAAACGGTTTTTGAAAATATATAATA
1 TATAG-TTTT-GAAAACGATTTTTGAAAATATATAATA
*
115229 TATACTTTT
1 TATAGTTTT
115238 AAGAAAATCG
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
36 9 0.23
37 9 0.23
38 21 0.54
ACGTcount: A:0.43, C:0.02, G:0.08, T:0.46
Consensus pattern (36 bp):
TATAGTTTTGAAAACGATTTTTGAAAATATATAATA
Found at i:115270 original size:93 final size:94
Alignment explanation
Indices: 115154--115332 Score: 274
Period size: 93 Copynumber: 1.9 Consensus size: 94
115144 TATTAATATA
* *
115154 GTATAGTTTTTGAAAATATTTTTTAAAAAATATAATATATAGATTTTAGAAAACGGTTTTTGAAA
1 GTATAGTTTTTGAAAACAATTTTTAAAAAATATAATATATAG-TTTT-GAAAACGGTTTTTGAAA
115219 ATATATA-A-TATATACTTTTAAGAAAATCG
64 ATATATATATTATATACTTTTAAGAAAATCG
* *
115248 GTATAG-TTTTGAAAACAATTTTTGAAAAATATATTATATAGTTTTGAAAACGGTTTTTGAAAAT
1 GTATAGTTTTTGAAAACAATTTTTAAAAAATATAATATATAGTTTTGAAAACGGTTTTTGAAAAT
*
115312 ATATATATTATATAGTTTTAA
66 ATATATATTATATACTTTTAA
115333 AAACAATTTT
Statistics
Matches: 78, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
91 24 0.31
92 5 0.06
93 43 0.55
94 6 0.08
ACGTcount: A:0.43, C:0.03, G:0.11, T:0.43
Consensus pattern (94 bp):
GTATAGTTTTTGAAAACAATTTTTAAAAAATATAATATATAGTTTTGAAAACGGTTTTTGAAAAT
ATATATATTATATACTTTTAAGAAAATCG
Found at i:115327 original size:38 final size:37
Alignment explanation
Indices: 115249--115553 Score: 399
Period size: 38 Copynumber: 8.2 Consensus size: 37
115239 AGAAAATCGG
115249 TATAGTTTTGAAAACAATTTTTG-AAAA-ATATATTA
1 TATAGTTTTGAAAACAATTTTTGAAAAATATATATTA
**
115284 TATAGTTTTGAAAACGGTTTTTGAAAATATATATATTA
1 TATAGTTTTGAAAACAATTTTTGAAAA-ATATATATTA
*
115322 TATAGTTTTAAAAACAATTTTTGAAAATATATATATTA
1 TATAGTTTTGAAAACAATTTTTGAAAA-ATATATATTA
** *
115360 TATAGTTTTGAAAATGATTTTTGAATATATATATATTA
1 TATAGTTTTGAAAACAATTTTTGAA-AAATATATATTA
115398 TATAGTTTTGAAAACAATTTTTG-AAAATATATATTA
1 TATAGTTTTGAAAACAATTTTTGAAAAATATATATTA
*
115434 TATAGTTTTGAAAACGATTTTT-AAAAA-ATATATTA
1 TATAGTTTTGAAAACAATTTTTGAAAAATATATATTA
* * *
115469 TATAGTTTTGAAAATCAGCTTTTGGAAACA-ATATATTA
1 TATAGTTTTGAAAA-CA-ATTTTTGAAAAATATATATTA
*
115507 TATAG-TTTGAAAAATAATTTTTGAAAAAATATATATTA
1 TATAGTTTTG-AAAACAATTTTTG-AAAAATATATATTA
115545 TATAGTTTT
1 TATAGTTTT
115554 AATTTTTTTT
Statistics
Matches: 237, Mismatches: 21, Indels: 20
0.85 0.08 0.07
Matches are distributed among these distances:
35 43 0.18
36 45 0.19
37 15 0.06
38 130 0.55
39 4 0.02
ACGTcount: A:0.43, C:0.03, G:0.10, T:0.45
Consensus pattern (37 bp):
TATAGTTTTGAAAACAATTTTTGAAAAATATATATTA
Found at i:116868 original size:22 final size:22
Alignment explanation
Indices: 116840--116886 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
116830 CTTTTAAATT
* *
116840 TTTTATTCTCTTTTTTATT-TTA
1 TTTTATT-TCATTTTCATTATTA
116862 TTTTATTTCATTTTCATTATTA
1 TTTTATTTCATTTTCATTATTA
116884 TTT
1 TTT
116887 CACATTAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 9 0.41
22 13 0.59
ACGTcount: A:0.17, C:0.09, G:0.00, T:0.74
Consensus pattern (22 bp):
TTTTATTTCATTTTCATTATTA
Found at i:117040 original size:5 final size:5
Alignment explanation
Indices: 117030--117055 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
117020 TCTTTGTTTG
117030 TTTTA TTTTA TTTTA TTTTA TTTTA T
1 TTTTA TTTTA TTTTA TTTTA TTTTA T
117056 CATTTAACAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:123019 original size:32 final size:34
Alignment explanation
Indices: 122982--123051 Score: 108
Period size: 34 Copynumber: 2.1 Consensus size: 34
122972 CCTTACAAAC
*
122982 TCCCTAG-TTTTTC-CGGGCTAACCTAGAACCTT
1 TCCCTAGCTTTTACACGGGCTAACCTAGAACCTT
*
123014 TCCCTAGCTTTTACACGGGCTAAGCTAGAACCTT
1 TCCCTAGCTTTTACACGGGCTAACCTAGAACCTT
123048 TCCC
1 TCCC
123052 CTTTACAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
32 7 0.21
33 5 0.15
34 22 0.65
ACGTcount: A:0.20, C:0.33, G:0.16, T:0.31
Consensus pattern (34 bp):
TCCCTAGCTTTTACACGGGCTAACCTAGAACCTT
Found at i:125383 original size:28 final size:28
Alignment explanation
Indices: 125331--125387 Score: 80
Period size: 28 Copynumber: 2.0 Consensus size: 28
125321 CCGCTGTTGC
* *
125331 TTTCAAGCACTGACTCTATGGCATAATG
1 TTTCAAGCACTGACTCAATGACATAATG
125359 TTTCAAGCACTTG-CTCAATGACATAATG
1 TTTCAAGCAC-TGACTCAATGACATAATG
125387 T
1 T
125388 AAATGGAAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
28 24 0.92
29 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (28 bp):
TTTCAAGCACTGACTCAATGACATAATG
Found at i:125748 original size:31 final size:31
Alignment explanation
Indices: 125713--125787 Score: 132
Period size: 31 Copynumber: 2.4 Consensus size: 31
125703 AAATTACACA
*
125713 TTTAGTACCTAAAATATCAATTTTGATCCAT
1 TTTAGTACCTAAAATATCAATTCTGATCCAT
*
125744 TTTAGTACCTAAAATATCAATTCTGGTCCAT
1 TTTAGTACCTAAAATATCAATTCTGATCCAT
125775 TTTAGTACCTAAA
1 TTTAGTACCTAAA
125788 CTTTTACTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.35, C:0.17, G:0.08, T:0.40
Consensus pattern (31 bp):
TTTAGTACCTAAAATATCAATTCTGATCCAT
Found at i:126641 original size:36 final size:35
Alignment explanation
Indices: 126564--126644 Score: 101
Period size: 35 Copynumber: 2.3 Consensus size: 35
126554 AACACAGTCA
* **
126564 TCAATTATATTCTAAAACCCAAATTCCAAAATGTT
1 TCAATTACATTCTAAAACCCAAATTCCAAAATAAT
*
126599 TTAATTACATTCT-AAACCTCAAATTCCAAAAATAAT
1 TCAATTACATTCTAAAACC-CAAATTCC-AAAATAAT
126635 TCAATTACAT
1 TCAATTACAT
126645 GCCCAACCCC
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
34 5 0.13
35 19 0.49
36 15 0.38
ACGTcount: A:0.44, C:0.20, G:0.01, T:0.35
Consensus pattern (35 bp):
TCAATTACATTCTAAAACCCAAATTCCAAAATAAT
Found at i:126658 original size:36 final size:35
Alignment explanation
Indices: 126581--126660 Score: 88
Period size: 36 Copynumber: 2.3 Consensus size: 35
126571 TATTCTAAAA
** * * *
126581 CCCAAATTCCAAAATGTTTTAATTACATTCTAAAC
1 CCCAAATTCCAAAATAATTCAATTACATGCCAAAC
* *
126616 CTCAAATTCCAAAAATAATTCAATTACATGCCCAAC
1 CCCAAATTCC-AAAATAATTCAATTACATGCCAAAC
126652 CCCAAATTC
1 CCCAAATTC
126661 ATAAACCATT
Statistics
Matches: 36, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
35 9 0.25
36 27 0.75
ACGTcount: A:0.41, C:0.28, G:0.03, T:0.29
Consensus pattern (35 bp):
CCCAAATTCCAAAATAATTCAATTACATGCCAAAC
Found at i:127582 original size:17 final size:17
Alignment explanation
Indices: 127560--127595 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
127550 TGTAATTAAA
127560 GTATTTTGGAATTTGAG
1 GTATTTTGGAATTTGAG
127577 GTATTTTGGAATTTGAG
1 GTATTTTGGAATTTGAG
127594 GT
1 GT
127596 TTAGAATGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.22, C:0.00, G:0.31, T:0.47
Consensus pattern (17 bp):
GTATTTTGGAATTTGAG
Found at i:130681 original size:19 final size:19
Alignment explanation
Indices: 130659--130698 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
130649 TTCGCGACCC
*
130659 GTCCGACGATGGATCCGAA
1 GTCCGACGATGGATCCAAA
*
130678 GTCCGACTATGGATCCAAA
1 GTCCGACGATGGATCCAAA
130697 GT
1 GT
130699 ATATCGTATC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.28, C:0.25, G:0.28, T:0.20
Consensus pattern (19 bp):
GTCCGACGATGGATCCAAA
Found at i:131758 original size:31 final size:31
Alignment explanation
Indices: 131720--131792 Score: 94
Period size: 31 Copynumber: 2.3 Consensus size: 31
131710 AACTTTTAAA
131720 ATTTGCAATACAATCCC-CTAACATTTAGTCC
1 ATTTGCAATACAATCCCTC-AACATTTAGTCC
***
131751 ATTTGCAATATGGTCCCTCAACATTTAGTCC
1 ATTTGCAATACAATCCCTCAACATTTAGTCC
131782 ATTTGTCAATA
1 ATTTG-CAATA
131793 TGGTCCCTGA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
31 31 0.84
32 6 0.16
ACGTcount: A:0.30, C:0.25, G:0.10, T:0.36
Consensus pattern (31 bp):
ATTTGCAATACAATCCCTCAACATTTAGTCC
Found at i:131797 original size:32 final size:30
Alignment explanation
Indices: 131735--131800 Score: 114
Period size: 31 Copynumber: 2.1 Consensus size: 30
131725 CAATACAATC
131735 CCCTAACATTTAGTCCATTTGCAATATGGT
1 CCCTAACATTTAGTCCATTTGCAATATGGT
131765 CCCTCAACATTTAGTCCATTTGTCAATATGGT
1 CCCT-AACATTTAGTCCATTTG-CAATATGGT
131797 CCCT
1 CCCT
131801 GATGTAACTG
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
30 4 0.12
31 17 0.50
32 13 0.38
ACGTcount: A:0.24, C:0.27, G:0.12, T:0.36
Consensus pattern (30 bp):
CCCTAACATTTAGTCCATTTGCAATATGGT
Found at i:133801 original size:31 final size:31
Alignment explanation
Indices: 133763--133828 Score: 123
Period size: 31 Copynumber: 2.1 Consensus size: 31
133753 AGTTACATCG
133763 GGGACCATATTGCAAATGAACTAAATGTTGA
1 GGGACCATATTGCAAATGAACTAAATGTTGA
*
133794 GGGACCATATTGTAAATGAACTAAATGTTGA
1 GGGACCATATTGCAAATGAACTAAATGTTGA
133825 GGGA
1 GGGA
133829 TTGTATTACA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.38, C:0.11, G:0.26, T:0.26
Consensus pattern (31 bp):
GGGACCATATTGCAAATGAACTAAATGTTGA
Found at i:134786 original size:2 final size:2
Alignment explanation
Indices: 134781--134821 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
134771 ACATATAGTT
134781 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
134822 GTTAGCATGA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:138830 original size:28 final size:29
Alignment explanation
Indices: 138799--138954 Score: 104
Period size: 29 Copynumber: 5.4 Consensus size: 29
138789 TAACTTTGGG
*
138799 TTTTTATTGTAAATTGTAAAAAG-TATGT
1 TTTTTATTGTAAATTGTAAAAAGTTATGC
*
138827 TTTTTATTAT-AATTGTAAAAAAGTATAT--
1 TTTTTATTGTAAATTGT-AAAAAGT-TATGC
* * * * *
138855 TTCATTCTTGTAATTTGTAAGAAGTTTTGC
1 TT-TTTATTGTAAATTGTAAAAAGTTATGC
** * *
138885 TTTTTATTGTATTTTGTAAGAAGTTTTGC
1 TTTTTATTGTAAATTGTAAAAAGTTATGC
** * * *
138914 TTTTTATTGTATTTTGTAAGAAGTTTTGG
1 TTTTTATTGTAAATTGTAAAAAGTTATGC
*
138943 TCTTTATTGTAA
1 TTTTTATTGTAA
138955 TTTATAAGAA
Statistics
Matches: 108, Mismatches: 13, Indels: 13
0.81 0.10 0.10
Matches are distributed among these distances:
27 6 0.06
28 19 0.18
29 73 0.68
30 10 0.09
ACGTcount: A:0.28, C:0.03, G:0.15, T:0.54
Consensus pattern (29 bp):
TTTTTATTGTAAATTGTAAAAAGTTATGC
Found at i:138894 original size:29 final size:29
Alignment explanation
Indices: 138862--138970 Score: 173
Period size: 29 Copynumber: 3.8 Consensus size: 29
138852 TATTTCATTC
138862 TTGTAATTTGTAAGAAGTTTTGCTTTTTA
1 TTGTAATTTGTAAGAAGTTTTGCTTTTTA
*
138891 TTGTATTTTGTAAGAAGTTTTGCTTTTTA
1 TTGTAATTTGTAAGAAGTTTTGCTTTTTA
* * *
138920 TTGTATTTTGTAAGAAGTTTTGGTCTTTA
1 TTGTAATTTGTAAGAAGTTTTGCTTTTTA
*
138949 TTGTAATTTATAAGAAGTTTTG
1 TTGTAATTTGTAAGAAGTTTTG
138971 GTCTTAACTA
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 75 1.00
ACGTcount: A:0.24, C:0.03, G:0.18, T:0.55
Consensus pattern (29 bp):
TTGTAATTTGTAAGAAGTTTTGCTTTTTA
Found at i:138984 original size:29 final size:29
Alignment explanation
Indices: 138930--138997 Score: 100
Period size: 29 Copynumber: 2.3 Consensus size: 29
138920 TTGTATTTTG
* * *
138930 TAAGAAGTTTTGGTCTTTATTGTAATTTA
1 TAAGAAGTTTTGGTCTTAACTATAATTTA
138959 TAAGAAGTTTTGGTCTTAACTATAATTTA
1 TAAGAAGTTTTGGTCTTAACTATAATTTA
*
138988 TAAAAAGTTT
1 TAAGAAGTTT
138998 GTCCTCGGTT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.34, C:0.04, G:0.15, T:0.47
Consensus pattern (29 bp):
TAAGAAGTTTTGGTCTTAACTATAATTTA
Found at i:138996 original size:58 final size:58
Alignment explanation
Indices: 138865--138997 Score: 158
Period size: 58 Copynumber: 2.3 Consensus size: 58
138855 TTCATTCTTG
* * * * * * *
138865 TAATTTGTAAGAAGTTTTGCTTTTTATTGTATTTTGTAAGAAGTTTTGCTTTTTATTG
1 TAATTTGTAAGAAGTTTTGCTCTTTATTGTAATTTATAAGAAGTTTTGCTCTTAACTA
* * *
138923 TATTTTGTAAGAAGTTTTGGTCTTTATTGTAATTTATAAGAAGTTTTGGTCTTAACTA
1 TAATTTGTAAGAAGTTTTGCTCTTTATTGTAATTTATAAGAAGTTTTGCTCTTAACTA
* *
138981 TAATTTATAAAAAGTTT
1 TAATTTGTAAGAAGTTT
138998 GTCCTCGGTT
Statistics
Matches: 62, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
58 62 1.00
ACGTcount: A:0.28, C:0.04, G:0.16, T:0.53
Consensus pattern (58 bp):
TAATTTGTAAGAAGTTTTGCTCTTTATTGTAATTTATAAGAAGTTTTGCTCTTAACTA
Found at i:139101 original size:28 final size:29
Alignment explanation
Indices: 139031--139120 Score: 155
Period size: 29 Copynumber: 3.1 Consensus size: 29
139021 TAATTTGTTA
*
139031 TTTATTATCATTTATAAAAACTTTAGACT
1 TTTATTATAATTTATAAAAACTTTAGACT
139060 TTTATTATAATTTATAAAAACTTTAGACT
1 TTTATTATAATTTATAAAAACTTTAGACT
*
139089 TTTATTAT-ATTTATAAAAACTTTAGACA
1 TTTATTATAATTTATAAAAACTTTAGACT
139117 TTTA
1 TTTA
139121 ATTTAATGTA
Statistics
Matches: 59, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
28 23 0.39
29 36 0.61
ACGTcount: A:0.40, C:0.08, G:0.03, T:0.49
Consensus pattern (29 bp):
TTTATTATAATTTATAAAAACTTTAGACT
Found at i:140394 original size:3 final size:3
Alignment explanation
Indices: 140386--140447 Score: 124
Period size: 3 Copynumber: 20.7 Consensus size: 3
140376 ACTTATTACT
140386 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
140434 TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TA
140448 TACAATGTAG
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:140732 original size:82 final size:81
Alignment explanation
Indices: 140621--140852 Score: 322
Period size: 82 Copynumber: 2.8 Consensus size: 81
140611 TTTCTTCCTC
** * * *
140621 TTTTGGGTAGTCAAATCAATTTTGGAAGACGTGTCTTTTCCACTATTCATTAAGGGGAGATCAGA
1 TTTTGGGTAGTCAAATCAATTTTGGAAGACGTGTCTGCTCTACTATTCATTCAGGGGAGATAAGA
*
140686 CTTGAT-TTGTCCATCTT
66 CTTGATAATG-CC-TCTT
* * *
140703 TTTTGGGTAGTCATATTAATTTTGAAAGACGTGTCTGCTCTACTATTCATTCAGGGGAGATAAGA
1 TTTTGGGTAGTCAAATCAATTTTGGAAGACGTGTCTGCTCTACTATTCATTCAGGGGAGATAAGA
140768 CTTGATCAATGCCTCTT
66 CTTGAT-AATGCCTCTT
* * *
140785 TTTTGGGTAGTCAGATCAATTTTGGAAGACGTGTCTGCTCTATTATTCATTCAGGGGAGATAAAA
1 TTTTGGGTAGTCAAATCAATTTTGGAAGACGTGTCTGCTCTACTATTCATTCAGGGGAGATAAGA
140850 CTT
66 CTT
140853 TAGAAATTTT
Statistics
Matches: 134, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
82 130 0.97
83 2 0.01
84 2 0.01
ACGTcount: A:0.25, C:0.15, G:0.22, T:0.38
Consensus pattern (81 bp):
TTTTGGGTAGTCAAATCAATTTTGGAAGACGTGTCTGCTCTACTATTCATTCAGGGGAGATAAGA
CTTGATAATGCCTCTT
Found at i:141116 original size:88 final size:88
Alignment explanation
Indices: 140934--141185 Score: 314
Period size: 88 Copynumber: 2.8 Consensus size: 88
140924 ATGGGTCTGC
* * * * * *
140934 CGGGAAGACCAAATCT-AAA-ATTAGAAGAATCTGCTCCATTACTCTTCTCTGATGATCAGACTT
1 CGGGAAGACCAAATCTGAAATATT-G-AGAATTTGTTCCACTACTCTTCTGTGGTGAT-AGACTC
*
140997 GAGATTGATTTGTTTCACTACTCTTT
63 GAGATTGATTTGTCTCACTACTCTTT
* *
141023 CGGGAAGACCAAATATGAAATATTGAGAATTTGTTCCACTACTCTTCTGTGGTGATAAACTCGAG
1 CGGGAAGACCAAATCTGAAATATTGAGAATTTGTTCCACTACTCTTCTGTGGTGATAGACTCGAG
*
141088 ATTGATTTGTCTCGCTACTCTTT
66 ATTGATTTGTCTCACTACTCTTT
* *
141111 CGGGAAGACCAAATCTGAAATATAGAGAATCTT-TTCCACTACACTT-TCGTGGTGATTAGACTC
1 CGGGAAGACCAAATCTGAAATATTGAGAAT-TTGTTCCACTACTCTTCT-GTGGTGA-TAGACTC
141174 GAGATTGATTTG
63 GAGATTGATTTG
141186 CCTTGAAGAC
Statistics
Matches: 144, Mismatches: 14, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
87 1 0.01
88 75 0.52
89 61 0.42
90 4 0.03
91 3 0.02
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.34
Consensus pattern (88 bp):
CGGGAAGACCAAATCTGAAATATTGAGAATTTGTTCCACTACTCTTCTGTGGTGATAGACTCGAG
ATTGATTTGTCTCACTACTCTTT
Found at i:141240 original size:76 final size:76
Alignment explanation
Indices: 141114--141262 Score: 201
Period size: 76 Copynumber: 2.0 Consensus size: 76
141104 ACTCTTTCGG
** * * *
141114 GAAGACCAAATCTGAAATATAGAGAATCTTTTCCACTACACTTTCGTGGTGATTAGACTCGAGAT
1 GAAGACCAAATCTGAAATATAGAGAATCTGCTCCACTACACTTCCGTGGTGATCAGACTCGAAAT
141179 TGATTTGCCTT
66 TGATTTGCCTT
* * * *
141190 GAAGACCAAATCTGACATA-AGAAGAATCTGCTCTACTACTCTTCCGTGGTGATCAGACTTGAAA
1 GAAGACCAAATCTGAAATATAG-AGAATCTGCTCCACTACACTTCCGTGGTGATCAGACTCGAAA
141254 TTGATTTGC
65 TTGATTTGC
141263 TTCGCTACTC
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
75 2 0.03
76 61 0.97
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (76 bp):
GAAGACCAAATCTGAAATATAGAGAATCTGCTCCACTACACTTCCGTGGTGATCAGACTCGAAAT
TGATTTGCCTT
Done.