Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008443.1 Hibiscus syriacus cultivar Beakdansim tig00111245_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81342
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Found at i:1474 original size:2 final size:2
Alignment explanation
Indices: 1451--1504 Score: 64
Period size: 2 Copynumber: 29.5 Consensus size: 2
1441 ATATGAATGG
*
1451 TA TA -A TA TA TA -A TA TA -A T- TA TA TA TG TA TA TA TA T- TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1488 TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA T
1505 CAATGGATAT
Statistics
Matches: 45, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
1 5 0.11
2 40 0.89
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1487 original size:17 final size:17
Alignment explanation
Indices: 1455--1502 Score: 73
Period size: 17 Copynumber: 2.9 Consensus size: 17
1445 GAATGGTATA
1455 ATATATA-ATATA-ATT
1 ATATATATATATATATT
*
1470 ATATATGTATATATATT
1 ATATATATATATATATT
1487 ATATATATATATATAT
1 ATATATATATATATAT
1503 ATCAATGGAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
15 6 0.21
16 5 0.17
17 18 0.62
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (17 bp):
ATATATATATATATATT
Found at i:1489 original size:23 final size:21
Alignment explanation
Indices: 1455--1504 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
1445 GAATGGTATA
1455 ATATATA-ATATAAT-TATAT
1 ATATATATATATAATATATAT
* *
1474 ATGTATATATATTATATATAT
1 ATATATATATATAATATATAT
1495 ATATATATAT
1 ATATATATAT
1505 CAATGGATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
19 6 0.23
20 6 0.23
21 14 0.54
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (21 bp):
ATATATATATATAATATATAT
Found at i:4547 original size:64 final size:62
Alignment explanation
Indices: 4479--4635 Score: 170
Period size: 64 Copynumber: 2.5 Consensus size: 62
4469 TTCAGTGTGT
** *
4479 ATCGATGCATAGGAAGTGCATCGATGCACCCATTAAAAATGGAAACATCGAATGCAATTAGTGC
1 ATCGATGCATAGG-AGTGCATCGATGCACCCATT-AAAATAAAAACATCGAAGGCAATTAGTGC
* * ** * *
4543 ATCGATGCATAAGGAGTGCATCGATGCACCCCCTTAAAATAAAAATATCGAAGGTGATTTGTGT
1 ATCGATGCAT-AGGAGTGCATCGATGCA-CCCATTAAAATAAAAACATCGAAGGCAATTAGTGC
* *
4607 ATCGATGCATGGGTAGTGTATCGATGCAC
1 ATCGATGCATAGG-AGTGCATCGATGCAC
4636 ATGTTAAAGA
Statistics
Matches: 79, Mismatches: 11, Indels: 7
0.81 0.11 0.07
Matches are distributed among these distances:
63 3 0.04
64 68 0.86
65 8 0.10
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.25
Consensus pattern (62 bp):
ATCGATGCATAGGAGTGCATCGATGCACCCATTAAAATAAAAACATCGAAGGCAATTAGTGC
Found at i:4668 original size:20 final size:20
Alignment explanation
Indices: 4643--4680 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
4633 CACATGTTAA
*
4643 AGAATGCATTGATGCACTGT
1 AGAATGCATCGATGCACTGT
4663 AGAATGCATCGATGCACT
1 AGAATGCATCGATGCACT
4681 TCAAAGGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (20 bp):
AGAATGCATCGATGCACTGT
Found at i:5794 original size:2 final size:2
Alignment explanation
Indices: 5787--5816 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
5777 CGTGTATTTG
5787 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
5817 GAATGGATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8406 original size:34 final size:34
Alignment explanation
Indices: 8347--8413 Score: 84
Period size: 34 Copynumber: 1.9 Consensus size: 34
8337 TTCTTGACAG
*
8347 TTGTTTTCTCCTTTTAATCAAGAGAGAA-TTGTCA
1 TTGTTTTCTCCTTGTAATC-AGAGAGAAGTTGTCA
8381 TTGTTTTCTCCTTGGTAGATC-GAGAGAAGTTGT
1 TTGTTTTCTCCTT-GTA-ATCAGAGAGAAGTTGT
8414 AATTTCTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
34 20 0.69
35 6 0.21
36 3 0.10
ACGTcount: A:0.22, C:0.13, G:0.21, T:0.43
Consensus pattern (34 bp):
TTGTTTTCTCCTTGTAATCAGAGAGAAGTTGTCA
Found at i:10146 original size:21 final size:21
Alignment explanation
Indices: 10122--10166 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
10112 TCATTGATTG
* * *
10122 TTATGGTGTTGATGTGATAGT
1 TTATGGTATTGACGTGACAGT
10143 TTATGGTATTGACGTGACAGT
1 TTATGGTATTGACGTGACAGT
10164 TTA
1 TTA
10167 CGCTACTTAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.22, C:0.04, G:0.29, T:0.44
Consensus pattern (21 bp):
TTATGGTATTGACGTGACAGT
Found at i:11607 original size:11 final size:11
Alignment explanation
Indices: 11591--11617 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
11581 TATAACTTCC
11591 TAATAGATTTT
1 TAATAGATTTT
11602 TAATAGATTTT
1 TAATAGATTTT
11613 TAATA
1 TAATA
11618 TAACTTTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (11 bp):
TAATAGATTTT
Found at i:12796 original size:17 final size:17
Alignment explanation
Indices: 12774--12807 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
12764 TATCCCATAA
12774 ATTTTAATAAAAATTAT
1 ATTTTAATAAAAATTAT
* *
12791 ATTTTATTAAAACTTAT
1 ATTTTAATAAAAATTAT
12808 CGTGTATCAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTTTAATAAAAATTAT
Found at i:22696 original size:6 final size:6
Alignment explanation
Indices: 22685--22715 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
22675 TTCCATCGTG
22685 GATTCC GATTCC GATTCC GATTCC GATTCC G
1 GATTCC GATTCC GATTCC GATTCC GATTCC G
22716 TTATTTCGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.16, C:0.32, G:0.19, T:0.32
Consensus pattern (6 bp):
GATTCC
Found at i:24533 original size:2 final size:2
Alignment explanation
Indices: 24526--24571 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
24516 GGAATGAATA
24526 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
24568 AT AT
1 AT AT
24572 CAGTACAGAA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:24926 original size:40 final size:35
Alignment explanation
Indices: 24850--24928 Score: 95
Period size: 35 Copynumber: 2.1 Consensus size: 35
24840 AAGATCATTA
*
24850 AATATAAAATAATCTTAATTATTAAACTTTTAAAT
1 AATATAAAATAATCTTAATTATCAAACTTTTAAAT
*
24885 AATATAAAATAATCATTAAATGTATCAAATTATTATAAAT
1 AATATAAAATAATC-TT-AAT-TATCAAACT-TT-TAAAT
24925 AATA
1 AATA
24929 ATAATAAATT
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
35 14 0.38
36 2 0.05
37 3 0.08
38 7 0.19
39 2 0.05
40 9 0.24
ACGTcount: A:0.54, C:0.05, G:0.01, T:0.39
Consensus pattern (35 bp):
AATATAAAATAATCTTAATTATCAAACTTTTAAAT
Found at i:24993 original size:26 final size:28
Alignment explanation
Indices: 24954--25006 Score: 76
Period size: 26 Copynumber: 2.0 Consensus size: 28
24944 ATGTTTAATG
24954 AATATATTATATAATA-TATCAAAAAATA
1 AATATATTATATAATAGT-TCAAAAAATA
24982 AATAT-TTA-ATAATAGTTCAAAAAAT
1 AATATATTATATAATAGTTCAAAAAAT
25007 TTAATCAATC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 15 0.62
27 4 0.17
28 5 0.21
ACGTcount: A:0.58, C:0.04, G:0.02, T:0.36
Consensus pattern (28 bp):
AATATATTATATAATAGTTCAAAAAATA
Found at i:27642 original size:2 final size:2
Alignment explanation
Indices: 27635--27663 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
27625 CTTATCCTAT
27635 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
27664 GAGAATAAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:27943 original size:49 final size:49
Alignment explanation
Indices: 27890--27993 Score: 174
Period size: 49 Copynumber: 2.1 Consensus size: 49
27880 TAAATTCCTA
*
27890 TTTTT-CACAATTATGTTACTTTTTTTTACTGTATTGTTATTTATATTACT
1 TTTTTCCACAATTATGTTA--TTTTTTTACTGTATTGTTATTAATATTACT
27940 TTTTTCCACAATTATGTTATTTTTTTACTGTATTGTTATTAATATTACT
1 TTTTTCCACAATTATGTTATTTTTTTACTGTATTGTTATTAATATTACT
27989 TTTTT
1 TTTTT
27994 GTACAAAAAC
Statistics
Matches: 52, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
49 34 0.65
50 5 0.10
51 13 0.25
ACGTcount: A:0.22, C:0.10, G:0.06, T:0.62
Consensus pattern (49 bp):
TTTTTCCACAATTATGTTATTTTTTTACTGTATTGTTATTAATATTACT
Found at i:29061 original size:15 final size:15
Alignment explanation
Indices: 29022--29069 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
29012 ACAAACGCAC
*
29022 AATATACTAATTATAT
1 AATATATTAA-TATAT
* *
29038 AATAGATTAATATTT
1 AATATATTAATATAT
29053 AATATATTAATTATAT
1 AATATATTAA-TATAT
29069 A
1 A
29070 TAATCAGACT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 13 0.50
16 13 0.50
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (15 bp):
AATATATTAATATAT
Found at i:30547 original size:38 final size:38
Alignment explanation
Indices: 30496--30569 Score: 130
Period size: 38 Copynumber: 1.9 Consensus size: 38
30486 ACGTCGTTTT
30496 AAAAAACTCAAATATACACCAAAACAACATTGTTTTAA
1 AAAAAACTCAAATATACACCAAAACAACATTGTTTTAA
* *
30534 AAAAAACTCAAATATACACCAAAACGACGTTGTTTT
1 AAAAAACTCAAATATACACCAAAACAACATTGTTTT
30570 GAATCCTCGT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.51, C:0.19, G:0.05, T:0.24
Consensus pattern (38 bp):
AAAAAACTCAAATATACACCAAAACAACATTGTTTTAA
Found at i:34352 original size:20 final size:20
Alignment explanation
Indices: 34329--34380 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
34319 AACGCGATCC
34329 CCAGAATCGCAAATCAGTTT
1 CCAGAATCGCAAATCAGTTT
34349 CCAGAATCGCAAATCAGTTT
1 CCAGAATCGCAAATCAGTTT
*
34369 CCAAAATCGCAA
1 CCAGAATCGCAA
34381 CGCGATTCTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.38, C:0.27, G:0.13, T:0.21
Consensus pattern (20 bp):
CCAGAATCGCAAATCAGTTT
Found at i:34397 original size:21 final size:20
Alignment explanation
Indices: 34370--34468 Score: 72
Period size: 21 Copynumber: 4.8 Consensus size: 20
34360 AATCAGTTTC
34370 CAAAATCGCAACGCGATTCTT
1 CAAAATCGCAACGCGATT-TT
* * * * *
34391 GAAAATCGCGATGCGATAGTA
1 CAAAATCGCAACGCGAT-TTT
* **
34412 CAAATTCGCATTGCGATTTT
1 CAAAATCGCAACGCGATTTT
* *
34432 CCAAAATCGCAACGCGAATAT
1 -CAAAATCGCAACGCGATTTT
*
34453 GAAAATCGCAACGCGA
1 CAAAATCGCAACGCGA
34469 ACACATAAAT
Statistics
Matches: 59, Mismatches: 17, Indels: 5
0.73 0.21 0.06
Matches are distributed among these distances:
20 16 0.27
21 43 0.73
ACGTcount: A:0.36, C:0.23, G:0.19, T:0.21
Consensus pattern (20 bp):
CAAAATCGCAACGCGATTTT
Found at i:34497 original size:20 final size:20
Alignment explanation
Indices: 34435--34628 Score: 221
Period size: 20 Copynumber: 9.7 Consensus size: 20
34425 CGATTTTCCA
* ** *
34435 AAATCGCAACGCGAATATGA
1 AAATCGCAACGCGTATCCGT
* *
34455 AAATCGCAACGCG-AACACAT
1 AAATCGCAACGCGTATC-CGT
34475 AAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
34495 AAATCGCAACGTGTATCCGT
1 AAATCGCAACGCGTATCCGT
**
34515 AAATCGCAACGCGTATGGGT
1 AAATCGCAACGCGTATCCGT
*
34535 AAATCGCAATGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
34555 ATATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
* * *
34575 AAATCGCAACG-ATAATACAT
1 AAATCGCAACGCGT-ATCCGT
34595 AAAATCGCAACGCGTATCCGT
1 -AAATCGCAACGCGTATCCGT
34616 AAATCGCAACGCG
1 AAATCGCAACGCG
34629 ATATTTAAAG
Statistics
Matches: 146, Mismatches: 23, Indels: 10
0.82 0.13 0.06
Matches are distributed among these distances:
19 2 0.01
20 126 0.86
21 17 0.12
22 1 0.01
ACGTcount: A:0.36, C:0.26, G:0.20, T:0.19
Consensus pattern (20 bp):
AAATCGCAACGCGTATCCGT
Found at i:34519 original size:60 final size:60
Alignment explanation
Indices: 34435--34628 Score: 253
Period size: 60 Copynumber: 3.2 Consensus size: 60
34425 CGATTTTCCA
* ** * *
34435 AAATCGCAACGCGAATATGAAAATCGCAACGCGAACACATAAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGT
* * *** *
34495 AAATCGCAACGTGTATCCGTAAATCGCAACGCGTATGGGTAAATCGCAATGCGTATCCGT
1 AAATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGT
* **
34555 ATATCGCAACGCGTATCCGTAAATCGCAACGATAATACATAAAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGTAAATCGCAACGCGAATACAT-AAATCGCAACGCGTATCCGT
34616 AAATCGCAACGCG
1 AAATCGCAACGCG
34629 ATATTTAAAG
Statistics
Matches: 112, Mismatches: 21, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
60 81 0.72
61 31 0.28
ACGTcount: A:0.36, C:0.26, G:0.20, T:0.19
Consensus pattern (60 bp):
AAATCGCAACGCGTATCCGTAAATCGCAACGCGAATACATAAATCGCAACGCGTATCCGT
Found at i:34799 original size:21 final size:22
Alignment explanation
Indices: 34773--34826 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
34763 CTCTCTACGG
34773 CGAAGAAATCCGT-CCCATCTC
1 CGAAGAAATCCGTCCCCATCTC
**
34794 CGAAGATTTCCGTCCCCATCTC
1 CGAAGAAATCCGTCCCCATCTC
**
34816 CGGCGAAATCC
1 CGAAGAAATCC
34827 CTCACAACCA
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
21 11 0.42
22 15 0.58
ACGTcount: A:0.24, C:0.39, G:0.17, T:0.20
Consensus pattern (22 bp):
CGAAGAAATCCGTCCCCATCTC
Found at i:35047 original size:33 final size:33
Alignment explanation
Indices: 35008--35078 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
34998 TTCACTTAGA
*
35008 TTTCATTTCGCGTTACGATTCTGTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
* *
35041 TTTCATTTCGCGTTGCTATTCTCTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
35074 TTTCA
1 TTTCA
35079 AGTTAGTATT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.11, C:0.23, G:0.18, T:0.48
Consensus pattern (33 bp):
TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
Found at i:35218 original size:14 final size:14
Alignment explanation
Indices: 35199--35253 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
35189 AGAATGACTG
35199 TCGCAACGAGAGAA
1 TCGCAACGAGAGAA
*
35213 TCGCAACGCGAAATGGAAA
1 TCGCAA--CGAGA--G-AA
35232 TCGCAACGAGAGAA
1 TCGCAACGAGAGAA
35246 TCGCAACG
1 TCGCAACG
35254 CGAAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
14 16 0.47
15 1 0.03
16 4 0.12
17 4 0.12
18 1 0.03
19 8 0.24
ACGTcount: A:0.40, C:0.24, G:0.27, T:0.09
Consensus pattern (14 bp):
TCGCAACGAGAGAA
Found at i:35266 original size:33 final size:33
Alignment explanation
Indices: 35199--35269 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
35189 AGAATGACTG
***
35199 TCGCAACGAGAGAATCGCAACGCGAAATGGAAA
1 TCGCAACGAGAGAATCGCAACGCGAAACCAAAA
35232 TCGCAACGAGAGAATCGCAACGCGAAACCAAAA
1 TCGCAACGAGAGAATCGCAACGCGAAACCAAAA
35265 TCGCA
1 TCGCA
35270 TTGCGATTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.42, C:0.25, G:0.24, T:0.08
Consensus pattern (33 bp):
TCGCAACGAGAGAATCGCAACGCGAAACCAAAA
Found at i:35287 original size:19 final size:19
Alignment explanation
Indices: 35265--35362 Score: 81
Period size: 19 Copynumber: 5.7 Consensus size: 19
35255 GAAACCAAAA
*
35265 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
35284 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
*
35298 TCTCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
35317 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* * *
35331 TCTCGTTGCGATTGTCATC
1 TCGCGTTGCGATTTTCATT
35350 TCGCGTTGCGATT
1 TCGCGTTGCGATT
35363 CTCTCGTTGC
Statistics
Matches: 63, Mismatches: 6, Indels: 20
0.71 0.07 0.22
Matches are distributed among these distances:
14 20 0.32
16 5 0.08
17 6 0.10
19 32 0.51
ACGTcount: A:0.10, C:0.24, G:0.22, T:0.43
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:35306 original size:14 final size:14
Alignment explanation
Indices: 35287--35376 Score: 81
Period size: 14 Copynumber: 5.7 Consensus size: 14
35277 TTTCATTTCG
35287 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
35301 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
35320 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
35334 CGTTGCGATTGTCATCT
1 CGTTGCGA-T-TC-TCT
35351 CGCGTTGCGATTCTCT
1 --CGTTGCGATTCTCT
35367 CGTTGCGATT
1 CGTTGCGATT
35377 TTCATTTCAA
Statistics
Matches: 64, Mismatches: 2, Indels: 20
0.74 0.02 0.23
Matches are distributed among these distances:
14 28 0.44
15 1 0.02
16 8 0.12
17 8 0.12
18 1 0.02
19 18 0.28
ACGTcount: A:0.09, C:0.26, G:0.23, T:0.42
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:35312 original size:33 final size:33
Alignment explanation
Indices: 35270--35384 Score: 212
Period size: 33 Copynumber: 3.5 Consensus size: 33
35260 CAAAATCGCA
35270 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
35303 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
* *
35336 TTGCGATTGTCATCTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
35369 TTGCGATTTTCATTTC
1 TTGCGATTTTCATTTC
35385 AACCAAAAGA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 78 1.00
ACGTcount: A:0.10, C:0.24, G:0.21, T:0.45
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
Found at i:37312 original size:185 final size:186
Alignment explanation
Indices: 37082--37463 Score: 748
Period size: 185 Copynumber: 2.1 Consensus size: 186
37072 TAGATTGCTT
37082 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
37147 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
37212 GTGTATTCTTTAACACTGTGAAATA-TATTTGTCTTTGTTTTGTCTTTTGGTTGAA
131 GTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAA
*
37267 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
37332 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
37397 GTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAA
131 GTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAA
37453 AGTAAATTTAT
1 AGTAAATTTAT
37464 CCATTCAAGT
Statistics
Matches: 194, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
185 154 0.79
186 40 0.21
ACGTcount: A:0.23, C:0.13, G:0.19, T:0.46
Consensus pattern (186 bp):
AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
TTTGTCTTTGTTTTGTCTTTTGGTTGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACT
GTGTATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAA
Found at i:37396 original size:93 final size:93
Alignment explanation
Indices: 37082--37461 Score: 744
Period size: 93 Copynumber: 4.1 Consensus size: 93
37072 TAGATTGCTT
*
37082 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
37147 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
37175 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATA-TA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
37239 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
37267 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
37332 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
37360 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
37425 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
37453 AGTAAATTT
1 AGTAAATTT
37462 ATCCATTCAA
Statistics
Matches: 285, Mismatches: 1, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
92 92 0.32
93 193 0.68
ACGTcount: A:0.22, C:0.13, G:0.19, T:0.46
Consensus pattern (93 bp):
AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
TTTGTCTTTGTTTTGTCTTTTGGTTGAA
Found at i:37545 original size:19 final size:19
Alignment explanation
Indices: 37505--37633 Score: 125
Period size: 19 Copynumber: 7.3 Consensus size: 19
37495 TAGTTTACTT
* *
37505 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAAC-CAAAA
37525 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
**
37544 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAACCAAAA
*
37563 TCGCAA--CG--A-CAGAA
1 TCGCAACGCGAAACCAAAA
37577 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
*
37596 TCGCAA--CG--A-CAAGA
1 TCGCAACGCGAAACCAAAA
37610 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
37629 TCGCA
1 TCGCA
37634 TTGCGATTTT
Statistics
Matches: 90, Mismatches: 9, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 19 0.21
15 2 0.02
16 4 0.04
17 4 0.04
18 2 0.02
19 46 0.51
20 13 0.14
ACGTcount: A:0.46, C:0.29, G:0.17, T:0.09
Consensus pattern (19 bp):
TCGCAACGCGAAACCAAAA
Found at i:37584 original size:33 final size:32
Alignment explanation
Indices: 37541--37633 Score: 150
Period size: 33 Copynumber: 2.8 Consensus size: 32
37531 CGCGAAACCA
**
37541 AAATCGCAACGCGAAATGAAAATCGCAACGAC
1 AAATCGCAACGCGAAACCAAAATCGCAACGAC
37573 AGAATCGCAACGCGAAACCAAAATCGCAACGAC
1 A-AATCGCAACGCGAAACCAAAATCGCAACGAC
37606 AAGATCGCAACGCGAAACCAAAATCGCA
1 AA-ATCGCAACGCGAAACCAAAATCGCA
37634 TTGCGATTTT
Statistics
Matches: 57, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
32 2 0.04
33 55 0.96
ACGTcount: A:0.46, C:0.28, G:0.18, T:0.08
Consensus pattern (32 bp):
AAATCGCAACGCGAAACCAAAATCGCAACGAC
Found at i:37631 original size:52 final size:52
Alignment explanation
Indices: 37505--37633 Score: 140
Period size: 52 Copynumber: 2.5 Consensus size: 52
37495 TAGTTTACTT
**
37505 TCGCAACACGAAACTTAAAATCGCAACGCGAAACCAAAATCGCAACGCGAAA
1 TCGCAACACGAAACACAAAATCGCAACGCGAAACCAAAATCGCAACGCGAAA
* * *
37557 T-G-AAAATCGCAACGACAGAATCGCAACGCGAAACCAAAATCGCAACGAC-AAGA
1 TCGCAACA-CGAAAC-ACAAAATCGCAACGCGAAACCAAAATCGCAACG-CGAA-A
*
37610 TCGCAACGCGAAAC-CAAAATCGCA
1 TCGCAACACGAAACACAAAATCGCA
37634 TTGCGATTTT
Statistics
Matches: 62, Mismatches: 9, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
50 3 0.05
51 6 0.10
52 42 0.68
53 3 0.05
54 6 0.10
55 2 0.03
ACGTcount: A:0.46, C:0.29, G:0.17, T:0.09
Consensus pattern (52 bp):
TCGCAACACGAAACACAAAATCGCAACGCGAAACCAAAATCGCAACGCGAAA
Found at i:37651 original size:19 final size:19
Alignment explanation
Indices: 37629--37746 Score: 130
Period size: 19 Copynumber: 6.7 Consensus size: 19
37619 GAAACCAAAA
*
37629 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
37648 TCGCGTTGCGA--TTC-TT
1 TCGCGTTGCGATTTTCATT
37664 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
*
37681 TCGCGTTGCGA--TTC-TG
1 TCGCGTTGCGATTTTCATT
37697 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
**
37714 TCGCGTTGCGATTTTGGTT
1 TCGCGTTGCGATTTTCATT
37733 TCGCGTTGCGATTT
1 TCGCGTTGCGATTT
37747 AAGTTTCGTG
Statistics
Matches: 84, Mismatches: 5, Indels: 20
0.77 0.05 0.18
Matches are distributed among these distances:
14 16 0.19
16 11 0.13
17 11 0.13
19 46 0.55
ACGTcount: A:0.09, C:0.20, G:0.24, T:0.47
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:37670 original size:14 final size:14
Alignment explanation
Indices: 37651--37707 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
37641 TTTCATTTCG
37651 CGTTGCGATTCTTT
1 CGTTGCGATTCTTT
37665 CGTTGCGATTTTCATTT
1 CGTTGCGA--TTC-TTT
*
37682 CGCGTTGCGATTCTGT
1 --CGTTGCGATTCTTT
37698 CGTTGCGATT
1 CGTTGCGATT
37708 TTCATTTCGC
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 18 0.49
16 5 0.14
17 6 0.16
19 8 0.22
ACGTcount: A:0.09, C:0.21, G:0.25, T:0.46
Consensus pattern (14 bp):
CGTTGCGATTCTTT
Found at i:37676 original size:33 final size:33
Alignment explanation
Indices: 37634--37726 Score: 177
Period size: 33 Copynumber: 2.8 Consensus size: 33
37624 CAAAATCGCA
*
37634 TTGCGATTTTCATTTCGCGTTGCGATTCTTTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
37667 TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
37700 TTGCGATTTTCATTTCGCGTTGCGATT
1 TTGCGATTTTCATTTCGCGTTGCGATT
37727 TTGGTTTCGC
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 59 1.00
ACGTcount: A:0.10, C:0.20, G:0.23, T:0.47
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
Found at i:37752 original size:19 final size:19
Alignment explanation
Indices: 37698--37762 Score: 78
Period size: 19 Copynumber: 3.4 Consensus size: 19
37688 GCGATTCTGT
*
37698 CGTTGCGATTTTCA-TTTCG
1 CGTTGCGA-TTTAAGTTTCG
**
37717 CGTTGCGATTTTGGTTTCG
1 CGTTGCGATTTAAGTTTCG
37736 CGTTGCGATTTAAGTTTCG
1 CGTTGCGATTTAAGTTTCG
*
37755 TGTTGCGA
1 CGTTGCGA
37763 AAGTAAACTA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
18 3 0.08
19 37 0.93
ACGTcount: A:0.11, C:0.17, G:0.28, T:0.45
Consensus pattern (19 bp):
CGTTGCGATTTAAGTTTCG
Found at i:39619 original size:37 final size:37
Alignment explanation
Indices: 39577--39647 Score: 133
Period size: 37 Copynumber: 1.9 Consensus size: 37
39567 AATTGATGTT
*
39577 TTTTGATTGTTTAATTGATTTGTAAAAGTTGATTCAA
1 TTTTGATTGTTTAATTGATTTGTAAAAGATGATTCAA
39614 TTTTGATTGTTTAATTGATTTGTAAAAGATGATT
1 TTTTGATTGTTTAATTGATTTGTAAAAGATGATT
39648 TGTAAAAGTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.30, C:0.01, G:0.17, T:0.52
Consensus pattern (37 bp):
TTTTGATTGTTTAATTGATTTGTAAAAGATGATTCAA
Found at i:39646 original size:14 final size:14
Alignment explanation
Indices: 39629--39664 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
39619 ATTGTTTAAT
39629 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
*
39643 TGATTTGTAAAAGT
1 TGATTTGTAAAAGA
39657 TGATTTGT
1 TGATTTGT
39665 GTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:39787 original size:19 final size:19
Alignment explanation
Indices: 39771--39872 Score: 151
Period size: 19 Copynumber: 5.6 Consensus size: 19
39761 AAAAATGACT
39771 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
39790 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
39809 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
39823 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
39842 ATCGCAATGCGGAAATGAAA
1 ATCGCAATGC-GAAATGAAA
39862 ATCGCAATGCG
1 ATCGCAATGCG
39873 TTTATAATTT
Statistics
Matches: 75, Mismatches: 2, Indels: 12
0.84 0.02 0.13
Matches are distributed among these distances:
14 10 0.13
15 1 0.01
16 2 0.03
17 2 0.03
18 1 0.01
19 40 0.53
20 19 0.25
ACGTcount: A:0.44, C:0.18, G:0.24, T:0.15
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:39925 original size:19 final size:19
Alignment explanation
Indices: 39901--40226 Score: 405
Period size: 19 Copynumber: 18.4 Consensus size: 19
39891 GATTATCTCG
39901 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
39920 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
39939 TTGCGA--TTC-TTTCG--
1 TTGCGATTTTCATTTCGCA
39953 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
39972 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
39991 TTGCGATTTTCATTTCGTA
1 TTGCGATTTTCATTTCGCA
*
40010 TTGCGATTTTAATTTCGCA
1 TTGCGATTTTCATTTCGCA
40029 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
40048 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
40062 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
40081 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
40100 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
40114 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
40133 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
40152 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
40166 TTGCGATTTTCATTTCCGCA
1 TTGCGATTTTCATTT-CGCA
40186 TTGCGATTTTCA--T-G--
1 TTGCGATTTTCATTTCGCA
* *
40200 TTGGGATTTTCATTTCGCG
1 TTGCGATTTTCATTTCGCA
40219 TTGCGATT
1 TTGCGATT
40227 GTATTTTCCG
Statistics
Matches: 269, Mismatches: 12, Indels: 52
0.81 0.04 0.16
Matches are distributed among these distances:
14 35 0.13
16 31 0.12
17 28 0.10
18 3 0.01
19 160 0.59
20 12 0.04
ACGTcount: A:0.14, C:0.21, G:0.18, T:0.47
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:39941 original size:52 final size:52
Alignment explanation
Indices: 39879--40198 Score: 550
Period size: 52 Copynumber: 6.0 Consensus size: 52
39869 TGCGTTTATA
*
39879 ATTTCGCATTGCGATTATCTCGTTGCGATTTTCATTTCGCATTGCGATTTTC
1 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTC
*
39931 ATTTCGCATTGCGATTCTTTCGTTGCGATTTTCATTTCGCATTGCGATTTTC
1 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTC
* *
39983 ATTTCGCATTGCGATTTTCATTTCGTATTGCGATTTTAATTTCGCATTGCGATTTTC
1 ATTTCGCATTGCGA--TTC-TCTCG--TTGCGATTTTCATTTCGCATTGCGATTTTC
40040 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTC
1 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTC
40092 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTC
1 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTC
40144 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTC
1 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTT-CGCATTGCGATTTTC
40197 AT
1 AT
40199 GTTGGGATTT
Statistics
Matches: 257, Mismatches: 5, Indels: 11
0.94 0.02 0.04
Matches are distributed among these distances:
52 182 0.71
53 17 0.07
54 7 0.03
55 8 0.03
57 43 0.17
ACGTcount: A:0.15, C:0.22, G:0.17, T:0.47
Consensus pattern (52 bp):
ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTC
Found at i:39976 original size:71 final size:72
Alignment explanation
Indices: 39901--40226 Score: 389
Period size: 71 Copynumber: 4.6 Consensus size: 72
39891 GATTATCTCG
39901 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTTTCG-TTGCGATTTTCA
1 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTTTCGATTGCGATTTTCA
39965 TTTCGCA
66 TTTCGCA
* *
39972 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGTATTGCGATTTTAATTTCGCATTGCGATT
1 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGA--TT-CTTTCG-ATTGCGATT
40037 TTCATTTCGCA
62 TTCATTTCGCA
*
40048 TTGCGA--TTC-TCTCG--TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGA--
1 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGA--TTC-TTTCG-ATTGCGATT
*
40106 TTC-TCTCG--
62 TTCATTTCGCA
*
40114 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCG-TTGCGATTTTCA
1 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTTTCGATTGCGATTTTCA
40178 TTTCCGCA
66 TTT-CGCA
* *
40186 TTGCGATTTTCA--T-G--TTGGGATTTTCATTTCGCGTTGCGATT
1 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATT
40227 GTATTTTCCG
Statistics
Matches: 227, Mismatches: 11, Indels: 38
0.82 0.04 0.14
Matches are distributed among these distances:
66 12 0.05
67 25 0.11
68 14 0.06
69 13 0.06
70 3 0.01
71 109 0.48
72 12 0.05
73 6 0.03
74 8 0.04
76 25 0.11
ACGTcount: A:0.14, C:0.21, G:0.18, T:0.47
Consensus pattern (72 bp):
TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTTTCGATTGCGATTTTCA
TTTCGCA
Found at i:40144 original size:161 final size:157
Alignment explanation
Indices: 39879--40198 Score: 552
Period size: 161 Copynumber: 2.0 Consensus size: 157
39869 TGCGTTTATA
39879 ATTTCGCATTGCGATTATCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCG
1 ATTTCGCATTGCGATTATCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCG
* *
39944 ATTCTTTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGT
66 ATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGA--TTC-TCTCG-
40009 ATTGCGATTTTAATTT-CGCATTGCGATTTTC
127 -TTGCGATTTTAATTTCCGCATTGCGATTTTC
*
40040 ATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCG
1 ATTTCGCATTGCGATTATCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCG
40105 ATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGC
66 ATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGC
*
40170 GATTTTCATTTCCGCATTGCGATTTTC
131 GATTTTAATTTCCGCATTGCGATTTTC
40197 AT
1 AT
40199 GTTGGGATTT
Statistics
Matches: 154, Mismatches: 4, Indels: 6
0.94 0.02 0.04
Matches are distributed among these distances:
156 14 0.09
157 17 0.11
158 4 0.03
159 3 0.02
161 116 0.75
ACGTcount: A:0.15, C:0.22, G:0.17, T:0.47
Consensus pattern (157 bp):
ATTTCGCATTGCGATTATCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCG
ATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGC
GATTTTAATTTCCGCATTGCGATTTTC
Found at i:40170 original size:33 final size:33
Alignment explanation
Indices: 39920--40226 Score: 280
Period size: 33 Copynumber: 8.8 Consensus size: 33
39910 TCATTTCGCA
*
39920 TTGCGATTTTCATTTCGCATTGCGATTCTTTCG
1 TTGCGATTTTCATTTCGCATTGCGATTCTCTCG
*
39953 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCG
1 TTGCGATTTTCATTTCGCATTGCGA--TTC-TCTCG
* * *
39989 CATTGCGATTTTCATTTCGTATTGCGATTTTAATTTCG
1 --TTGCGATTTTCATTTCGCATTGCGA--TT-CTCTCG
40027 CATTGCGATTTTCATTTCGCATTGCGATTCTCTCG
1 --TTGCGATTTTCATTTCGCATTGCGATTCTCTCG
*
40062 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCG
1 TTGCGATTTTCATTTCGCATTGCGA--TTC-TCTCG
* * * * *
40098 CATTGCGATTCTCTCGTTGCG-ATTTTC-ATT-TCGCA
1 --TTGCGATT-T-TCATTTCGCA-TTGCGATTCTCTCG
40133 TTGCGATTTTCATTTCGCATTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCATTGCGATTCTCTCG
*
40166 TTGCGATTTTCATTTCCGCATTGCGATTTTCAT-G
1 TTGCGATTTTCATTT-CGCATTGCGATTCTC-TCG
* *
40200 TTGGGATTTTCATTTCGCGTTGCGATT
1 TTGCGATTTTCATTTCGCATTGCGATT
40227 GTATTTTCCG
Statistics
Matches: 235, Mismatches: 20, Indels: 38
0.80 0.07 0.13
Matches are distributed among these distances:
31 9 0.04
32 5 0.02
33 87 0.37
34 29 0.12
35 13 0.06
36 11 0.05
37 2 0.01
38 67 0.29
39 3 0.01
40 9 0.04
ACGTcount: A:0.14, C:0.21, G:0.18, T:0.47
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCATTGCGATTCTCTCG
Found at i:42758 original size:24 final size:24
Alignment explanation
Indices: 42724--42770 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
42714 CTGAAACATC
42724 ATCAAAATCCGTG-TATTGACCAAT
1 ATCAAAATCCG-GATATTGACCAAT
*
42748 ATCAAAGTCCGGATATTGACCAA
1 ATCAAAATCCGGATATTGACCAA
42771 GACCAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (24 bp):
ATCAAAATCCGGATATTGACCAAT
Found at i:43470 original size:20 final size:20
Alignment explanation
Indices: 43442--43810 Score: 458
Period size: 20 Copynumber: 18.4 Consensus size: 20
43432 AAATTTCAGT
* * * *
43442 GTTGTGATTTACAGATTCTC
1 GTTGCGATTTACGGATACGC
*
43462 GTTGCGATTTACGGATTA-TC
1 GTTGCGATTTACGGA-TACGC
* * *
43482 GTTGCGATTTACAGATTCTC
1 GTTGCGATTTACGGATACGC
*
43502 GTTGCGATTTACGGATTA-TC
1 GTTGCGATTTACGGA-TACGC
43522 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
*
43542 GTTGCGATTTACGGATTA-TC
1 GTTGCGATTTACGGA-TACGC
43562 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
43582 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
*
43602 ATTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
*
43622 GTTGCGATTTACGGATACAC
1 GTTGCGATTTACGGATACGC
*
43642 GTTGCGGTTTACGGATACGC
1 GTTGCGATTTACGGATACGC
43662 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
*
43682 GTTGCGATATACGGATACGC
1 GTTGCGATTTACGGATACGC
* **
43702 ATTGCGATTTACCCATACGC
1 GTTGCGATTTACGGATACGC
*
43722 GTTGCGATTTACGGATACAC
1 GTTGCGATTTACGGATACGC
43742 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
* *
43762 GTTGCGATTTATGTG-TTCGC
1 GTTGCGATTTACG-GATACGC
* ** *
43782 GTTGCGATTTTCATATTCGC
1 GTTGCGATTTACGGATACGC
43802 GTTGCGATT
1 GTTGCGATT
43811 ATGGAAAATC
Statistics
Matches: 309, Mismatches: 32, Indels: 16
0.87 0.09 0.04
Matches are distributed among these distances:
19 5 0.02
20 299 0.97
21 5 0.02
ACGTcount: A:0.20, C:0.19, G:0.26, T:0.35
Consensus pattern (20 bp):
GTTGCGATTTACGGATACGC
Found at i:45330 original size:22 final size:21
Alignment explanation
Indices: 45304--45389 Score: 84
Period size: 21 Copynumber: 4.0 Consensus size: 21
45294 AAGAATTGAT
*
45304 CTTTTAATAGAAGGGATTGATC
1 CTTTTAAT-GAAGGGATCGATC
* * *
45326 ATTTTCATTAAGGGATCGATC
1 CTTTTAATGAAGGGATCGATC
**
45347 CTTTTGGTGAAGGGATCGATC
1 CTTTTAATGAAGGGATCGATC
*
45368 CTTTTACTCG-AGGGATCGATC
1 CTTTTAAT-GAAGGGATCGATC
45389 C
1 C
45390 CAAACCTATT
Statistics
Matches: 53, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
21 46 0.87
22 7 0.13
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.35
Consensus pattern (21 bp):
CTTTTAATGAAGGGATCGATC
Found at i:46048 original size:20 final size:20
Alignment explanation
Indices: 46011--46068 Score: 57
Period size: 20 Copynumber: 3.0 Consensus size: 20
46001 CCAAAGTCAT
46011 AAAAATTCAAATATCCAAAC
1 AAAAATTCAAATATCCAAAC
* *
46031 AAAACATTCAAGTA-CCAAAT
1 AAAA-ATTCAAATATCCAAAC
* *
46051 AAACA-TCAAAGATCCAAA
1 AAAAATTCAAATATCCAAA
46069 TAACATAAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
18 5 0.16
19 6 0.19
20 12 0.39
21 8 0.26
ACGTcount: A:0.59, C:0.21, G:0.03, T:0.17
Consensus pattern (20 bp):
AAAAATTCAAATATCCAAAC
Found at i:46056 original size:19 final size:20
Alignment explanation
Indices: 46009--46071 Score: 67
Period size: 19 Copynumber: 3.2 Consensus size: 20
45999 TACCAAAGTC
*
46009 ATAAAAATTCAAATATCCAA
1 ATAAACATTCAAATATCCAA
* *
46029 ACAAAACATTCAAGTA-CCAA
1 A-TAAACATTCAAATATCCAA
*
46049 ATAAACA-TCAAAGATCCAA
1 ATAAACATTCAAATATCCAA
46068 ATAA
1 ATAA
46072 CATAAATGTA
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
18 5 0.14
19 13 0.37
20 6 0.17
21 11 0.31
ACGTcount: A:0.59, C:0.19, G:0.03, T:0.19
Consensus pattern (20 bp):
ATAAACATTCAAATATCCAA
Found at i:49101 original size:13 final size:13
Alignment explanation
Indices: 49083--49107 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
49073 ATTAATATTA
49083 AAAATAAAGAAAT
1 AAAATAAAGAAAT
49096 AAAATAAAGAAA
1 AAAATAAAGAAA
49108 AATGAACAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.08, T:0.12
Consensus pattern (13 bp):
AAAATAAAGAAAT
Found at i:54094 original size:20 final size:21
Alignment explanation
Indices: 54058--54109 Score: 63
Period size: 20 Copynumber: 2.5 Consensus size: 21
54048 ACTGGAATCC
54058 AAGGGATCGATACTTTT-ATA
1 AAGGGATCGATACTTTTGATA
* *
54078 AGGGGATCGAT-CATTTTGTTA
1 AAGGGATCGATAC-TTTTGATA
54099 AAGGGATCGAT
1 AAGGGATCGAT
54110 TTTTTTCTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 1 0.04
20 14 0.52
21 12 0.44
ACGTcount: A:0.31, C:0.10, G:0.27, T:0.33
Consensus pattern (21 bp):
AAGGGATCGATACTTTTGATA
Found at i:61468 original size:17 final size:17
Alignment explanation
Indices: 61446--61478 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
61436 TTTTAATCAT
61446 TAAAATTTTAAAAATTA
1 TAAAATTTTAAAAATTA
*
61463 TAAAATTTTCAAAATT
1 TAAAATTTTAAAAATT
61479 GTTATAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (17 bp):
TAAAATTTTAAAAATTA
Found at i:61530 original size:33 final size:31
Alignment explanation
Indices: 61458--61540 Score: 105
Period size: 32 Copynumber: 2.6 Consensus size: 31
61448 AAATTTTAAA
*
61458 AATTATAAAATTT-TCAAAATTGTTATAAAAT
1 AATTATTAAATTTATC-AAATTGTTATAAAAT
* *
61489 GATCATTAAACTTTATCAAATTGTTATAAAGAT
1 AATTATTAAA-TTTATCAAATTGTTATAAA-AT
61522 AATTATTAAATTTATCAAA
1 AATTATTAAATTTATCAAA
61541 CTTTTATTCT
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
31 7 0.16
32 25 0.57
33 12 0.27
ACGTcount: A:0.48, C:0.06, G:0.05, T:0.41
Consensus pattern (31 bp):
AATTATTAAATTTATCAAATTGTTATAAAAT
Found at i:63904 original size:6 final size:6
Alignment explanation
Indices: 63895--63920 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
63885 TTAATTTAAA
63895 TTTATT TTTATT TTTATT TTTATT TT
1 TTTATT TTTATT TTTATT TTTATT TT
63921 AATCATATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTATT
Found at i:66597 original size:21 final size:21
Alignment explanation
Indices: 66544--66597 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
66534 GCGTTGCATT
66544 TCGCGTTGCGATAATTGAAAA
1 TCGCGTTGCGATAATTGAAAA
* *
66565 TCGCATTGCGATAGTTGAAAA
1 TCGCGTTGCGATAATTGAAAA
*
66586 TCGCGTTACGAT
1 TCGCGTTGCGAT
66598 TTTCCATTTC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.30
Consensus pattern (21 bp):
TCGCGTTGCGATAATTGAAAA
Found at i:66611 original size:20 final size:20
Alignment explanation
Indices: 66586--66665 Score: 90
Period size: 20 Copynumber: 3.9 Consensus size: 20
66576 TAGTTGAAAA
* *
66586 TCGCGTTACGATTTTCCATT
1 TCGCGTTGCGATTTTCCAGT
66606 TCGCGTTGCGATTTTCCAGT
1 TCGCGTTGCGATTTTCCAGT
* *
66626 TCGCGTTGCGATAGTCTACAGT
1 TCGCGTTGCGAT--TTTCCAGT
66648 T-GTCGTTGCGATTTTCCA
1 TCG-CGTTGCGATTTTCCA
66666 AATTCGTTGC
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
20 34 0.67
21 1 0.02
22 16 0.31
ACGTcount: A:0.14, C:0.24, G:0.23, T:0.40
Consensus pattern (20 bp):
TCGCGTTGCGATTTTCCAGT
Found at i:66654 original size:22 final size:22
Alignment explanation
Indices: 66629--66700 Score: 87
Period size: 22 Copynumber: 3.4 Consensus size: 22
66619 TTCCAGTTCG
66629 CGTTGCGATAGTCTACAGTTGT
1 CGTTGCGATAGTCTACAGTTGT
* * **
66651 CGTTGCGAT--TTTCCAAAT-T
1 CGTTGCGATAGTCTACAGTTGT
66670 CGTTGCGATAGTCTACAGTTGT
1 CGTTGCGATAGTCTACAGTTGT
66692 CGTTGCGAT
1 CGTTGCGAT
66701 TTTCCAAATT
Statistics
Matches: 39, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
19 10 0.26
20 5 0.13
21 5 0.13
22 19 0.49
ACGTcount: A:0.18, C:0.19, G:0.25, T:0.38
Consensus pattern (22 bp):
CGTTGCGATAGTCTACAGTTGT
Found at i:66674 original size:19 final size:19
Alignment explanation
Indices: 66650--66719 Score: 77
Period size: 19 Copynumber: 3.5 Consensus size: 19
66640 TCTACAGTTG
66650 TCGTTGCGATTTTCCAAAT
1 TCGTTGCGATTTTCCAAAT
* * **
66669 TCGTTGCGATAGTCTACAGTT
1 TCGTTGCGAT--TTTCCAAAT
66690 GTCGTTGCGATTTTCCAAAT
1 -TCGTTGCGATTTTCCAAAT
66710 TCGTTGCGAT
1 TCGTTGCGAT
66720 AGTTTAAAAA
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
19 20 0.50
20 5 0.12
21 5 0.12
22 10 0.25
ACGTcount: A:0.19, C:0.20, G:0.21, T:0.40
Consensus pattern (19 bp):
TCGTTGCGATTTTCCAAAT
Found at i:66684 original size:41 final size:41
Alignment explanation
Indices: 66609--66722 Score: 194
Period size: 41 Copynumber: 2.8 Consensus size: 41
66599 TTCCATTTCG
*
66609 CGTTGCGATTTTCC-AGTTCGCGTTGCGATAGTCTACAGTTGT
1 CGTTGCGATTTTCCAAATT--CGTTGCGATAGTCTACAGTTGT
66651 CGTTGCGATTTTCCAAATTCGTTGCGATAGTCTACAGTTGT
1 CGTTGCGATTTTCCAAATTCGTTGCGATAGTCTACAGTTGT
66692 CGTTGCGATTTTCCAAATTCGTTGCGATAGT
1 CGTTGCGATTTTCCAAATTCGTTGCGATAGT
66723 TTAAAAAAAA
Statistics
Matches: 70, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
41 53 0.76
42 14 0.20
43 3 0.04
ACGTcount: A:0.18, C:0.20, G:0.24, T:0.39
Consensus pattern (41 bp):
CGTTGCGATTTTCCAAATTCGTTGCGATAGTCTACAGTTGT
Found at i:67341 original size:6 final size:6
Alignment explanation
Indices: 67330--67354 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
67320 TCGTCTCGTC
67330 TCGTGG TCGTGG TCGTGG TCGTGG T
1 TCGTGG TCGTGG TCGTGG TCGTGG T
67355 AATACGTGTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.16, G:0.48, T:0.36
Consensus pattern (6 bp):
TCGTGG
Found at i:67494 original size:41 final size:41
Alignment explanation
Indices: 67424--67570 Score: 176
Period size: 41 Copynumber: 3.6 Consensus size: 41
67414 ACAATTTTTT
* * *
67424 TTTTTAACTATCGCAA--CGAATTTGGAAAATCACAACGAC-A
1 TTTTCAACTATCGCAACGCGAA-ATGGAAAATCGCAACG-CGA
* *
67464 TTGT-AGACTGTCGCAACGCGAAATGGAAAATCGCAACGCGA
1 TTTTCA-ACTATCGCAACGCGAAATGGAAAATCGCAACGCGA
* *
67505 TTTTCAACTATAGCAAAGCGAAATGGAAAATCGCAACGCGA
1 TTTTCAACTATCGCAACGCGAAATGGAAAATCGCAACGCGA
67546 TTTTCAACTATCGCAACGCGAAATG
1 TTTTCAACTATCGCAACGCGAAATG
67571 CAACGCGAAT
Statistics
Matches: 92, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
39 1 0.01
40 13 0.14
41 73 0.79
42 5 0.05
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.22
Consensus pattern (41 bp):
TTTTCAACTATCGCAACGCGAAATGGAAAATCGCAACGCGA
Found at i:67499 original size:20 final size:20
Alignment explanation
Indices: 67474--67545 Score: 72
Period size: 20 Copynumber: 3.5 Consensus size: 20
67464 TTGTAGACTG
67474 TCGCAACGCGAAATGGAAAA
1 TCGCAACGCGAAATGGAAAA
** ** *
67494 TCGCAACGCGATTTTCAACTA
1 TCGCAACGCGAAATGGAA-AA
* *
67515 TAGCAAAGCGAAATGGAAAA
1 TCGCAACGCGAAATGGAAAA
67535 TCGCAACGCGA
1 TCGCAACGCGA
67546 TTTTCAACTA
Statistics
Matches: 37, Mismatches: 14, Indels: 2
0.70 0.26 0.04
Matches are distributed among these distances:
20 24 0.65
21 13 0.35
ACGTcount: A:0.40, C:0.22, G:0.22, T:0.15
Consensus pattern (20 bp):
TCGCAACGCGAAATGGAAAA
Found at i:67574 original size:21 final size:21
Alignment explanation
Indices: 67474--67574 Score: 80
Period size: 21 Copynumber: 4.9 Consensus size: 21
67464 TTGTAGACTG
*
67474 TCGCAACGCGAAATGGAA-AA
1 TCGCAACGCGAAATGCAACAA
** * *
67494 TCGCAACGCGATTTTCAACTA
1 TCGCAACGCGAAATGCAACAA
* * *
67515 TAGCAAAGCGAAATGGAA-AA
1 TCGCAACGCGAAATGCAACAA
** * *
67535 TCGCAACGCGATTTTCAACTA
1 TCGCAACGCGAAATGCAACAA
67556 TCGCAACGCGAAATGCAAC
1 TCGCAACGCGAAATGCAAC
67575 GCGAATTTGC
Statistics
Matches: 57, Mismatches: 22, Indels: 3
0.70 0.27 0.04
Matches are distributed among these distances:
20 27 0.47
21 30 0.53
ACGTcount: A:0.39, C:0.24, G:0.20, T:0.18
Consensus pattern (21 bp):
TCGCAACGCGAAATGCAACAA
Done.