Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008445.1 Hibiscus syriacus cultivar Beakdansim tig00111250_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 899959
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 4
Found at i:12035 original size:22 final size:23
Alignment explanation
Indices: 11991--12036 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
11981 AGTGTTCTGA
*
11991 TTTTTTATACTCTATAAATATAT
1 TTTTTTATACTCTATAAACATAT
* *
12014 TTTTTTATA-TTTATTAACATAT
1 TTTTTTATACTCTATAAACATAT
12036 T
1 T
12037 AGAACTTGTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.61
Consensus pattern (23 bp):
TTTTTTATACTCTATAAACATAT
Found at i:20951 original size:34 final size:35
Alignment explanation
Indices: 20879--20952 Score: 114
Period size: 35 Copynumber: 2.1 Consensus size: 35
20869 CGTCACTAAC
**
20879 AGTAAGGCCCTGAGCACACAGCCGAGGAACCGGTA
1 AGTAAGGCCCTGAGCACACAGCCGAGGAACCGCCA
*
20914 AGTAAGGCCCTGAGCACACAG-CGAGGAACCTCCA
1 AGTAAGGCCCTGAGCACACAGCCGAGGAACCGCCA
20948 AGTAA
1 AGTAA
20953 TCTTCCTCCA
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
34 15 0.42
35 21 0.58
ACGTcount: A:0.34, C:0.28, G:0.28, T:0.09
Consensus pattern (35 bp):
AGTAAGGCCCTGAGCACACAGCCGAGGAACCGCCA
Found at i:21055 original size:24 final size:24
Alignment explanation
Indices: 21028--21102 Score: 116
Period size: 24 Copynumber: 3.2 Consensus size: 24
21018 CATAATTCAA
*
21028 GTCAAGTATCATATCAGAATCCAG
1 GTCAAGTATCAGATCAGAATCCAG
* *
21052 GTCATGTATCAGATCAGAATCCAT
1 GTCAAGTATCAGATCAGAATCCAG
21076 GTCAA-TATCAGATCAGAATCCAG
1 GTCAAGTATCAGATCAGAATCCAG
21099 GTCA
1 GTCA
21103 GGATCATAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
23 21 0.46
24 25 0.54
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.25
Consensus pattern (24 bp):
GTCAAGTATCAGATCAGAATCCAG
Found at i:21108 original size:23 final size:23
Alignment explanation
Indices: 21032--21108 Score: 109
Period size: 23 Copynumber: 3.3 Consensus size: 23
21022 ATTCAAGTCA
*
21032 AGTATCATATCAGAATCCAGGTC
1 AGTATCAGATCAGAATCCAGGTC
*
21055 ATGTATCAGATCAGAATCCATGTC
1 A-GTATCAGATCAGAATCCAGGTC
*
21079 AATATCAGATCAGAATCCAGGTC
1 AGTATCAGATCAGAATCCAGGTC
*
21102 AGGATCA
1 AGTATCA
21109 TAATAGAATT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
23 26 0.55
24 21 0.45
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Consensus pattern (23 bp):
AGTATCAGATCAGAATCCAGGTC
Found at i:21135 original size:47 final size:47
Alignment explanation
Indices: 21011--21124 Score: 124
Period size: 47 Copynumber: 2.4 Consensus size: 47
21001 GATATCAAAA
* * * * *
21011 ATCAAAACATAATTCAAGTCAAGTATCATATCAGAATCCAGGTCATGT
1 ATCAAATCAGAATCCAAGTCAA-TATCAGATCAGAATCCAGGTCATGG
* *
21059 ATCAGATCAGAATCCATGTCAATATCAGATCAGAATCCAGGTCA-GG
1 ATCAAATCAGAATCCAAGTCAATATCAGATCAGAATCCAGGTCATGG
*
21105 ATCATAAT-AGAATTCAAGTC
1 ATCA-AATCAGAATCCAAGTC
21125 GGAAATCAGA
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
46 15 0.27
47 23 0.42
48 17 0.31
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.25
Consensus pattern (47 bp):
ATCAAATCAGAATCCAAGTCAATATCAGATCAGAATCCAGGTCATGG
Found at i:22275 original size:17 final size:17
Alignment explanation
Indices: 22253--22286 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
22243 CTTCCATCCG
*
22253 ATCTATTATTTAATTCA
1 ATCTATCATTTAATTCA
*
22270 ATCTATCATTTACTTCA
1 ATCTATCATTTAATTCA
22287 GTCCTTTCGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.32, C:0.18, G:0.00, T:0.50
Consensus pattern (17 bp):
ATCTATCATTTAATTCA
Found at i:23624 original size:18 final size:18
Alignment explanation
Indices: 23601--23646 Score: 92
Period size: 18 Copynumber: 2.6 Consensus size: 18
23591 CAATGGTCAA
23601 CGGGTCGGGTCAACGGGT
1 CGGGTCGGGTCAACGGGT
23619 CGGGTCGGGTCAACGGGT
1 CGGGTCGGGTCAACGGGT
23637 CGGGTCGGGT
1 CGGGTCGGGT
23647 TGTGACCGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.09, C:0.22, G:0.52, T:0.17
Consensus pattern (18 bp):
CGGGTCGGGTCAACGGGT
Found at i:23642 original size:13 final size:13
Alignment explanation
Indices: 23580--23624 Score: 63
Period size: 13 Copynumber: 3.3 Consensus size: 13
23570 GGTCAACTCC
*
23580 GGTCAACGGGTCAAT
1 GGTCAACGGGTC--G
23595 GGTCAACGGGTCG
1 GGTCAACGGGTCG
23608 GGTCAACGGGTCG
1 GGTCAACGGGTCG
23621 GGTC
1 GGTC
23625 GGGTCAACGG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
13 17 0.59
15 12 0.41
ACGTcount: A:0.18, C:0.22, G:0.42, T:0.18
Consensus pattern (13 bp):
GGTCAACGGGTCG
Found at i:45535 original size:106 final size:106
Alignment explanation
Indices: 45321--46574 Score: 1954
Period size: 106 Copynumber: 11.8 Consensus size: 106
45311 ATATCATGCC
* * * * * * *
45321 ACTCAAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTTAAC-AACAATTTTCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
* * * *
45385 AATTTCGGAGCCAATTTCAACTTCATAGCGAAGGATATTAG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* *
45426 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
* *
45491 AATTTCAGATCCAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* * * *
45532 ACTCCAGACAACACAAGTTCAACATCACGACGAAGGGACCGCTGGTTGTCAATAAACAACTTTCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
* * *
45597 AATTTCAGTGCCAATTTTAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* * *
45638 ACTCCAAACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAAATTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
45703 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* *
45744 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGATGTCAATAAACAACTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
* *
45809 AATTTTAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* * * *
45850 ACTCCAGAGAACGCAAGTTCAACTTCACAACGAAGGGACTGCTGGTTGTCAACAAACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
45915 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* *
45956 ACTCCAGACAACGGAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
46021 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* *
46062 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCACTGGTTGTCAACAAACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
46127 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
*
46168 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGAACCGCTGGTTGTCAACAAACAATTTCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG-ACCGCTGGTTGTCAACAAACAACTTCC
46233 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
65 CAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* **
46275 ACTCCAGACAACGCAAGTTCAACTTCACGATGAAGGGACCGCTGGTTGTCAACAAACAACTTCTT
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
* *
46340 AATTTTAGAGCCAATTTCAACTTCACAACGAATGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* * * *
46381 ACTCCAAACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTTCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
* * * * *
46446 AATTTCAGAGCCAATTT-TACTTCATAGCGTAGTATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
** * * * * *
46486 ACTAAAGACAATGCAAGTTTAACTTCACGAAGAAGGGACCGCTGGTTGTCAATAAATAACTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
46551 AATTTCAGAGCCAATTTCAACTTC
66 AATTTCAGAGCCAATTTCAACTTC
46575 TTAGTGAAGG
Statistics
Matches: 1064, Mismatches: 82, Indels: 5
0.92 0.07 0.00
Matches are distributed among these distances:
105 137 0.13
106 825 0.78
107 102 0.10
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (106 bp):
ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
Found at i:47534 original size:37 final size:37
Alignment explanation
Indices: 47481--47585 Score: 140
Period size: 37 Copynumber: 2.8 Consensus size: 37
47471 CATTTTCGTC
*
47481 CTACTAGGATTCAAACTCCTAAAAGTAGGATAGAATT
1 CTACTAGGATTTAAACTCCTAAAAGTAGGATAGAATT
* * * *
47518 TTTCTAGGATTTAAACTCCTAAAAATAGGATAGAGTT
1 CTACTAGGATTTAAACTCCTAAAAGTAGGATAGAATT
*
47555 CTACTATGATTTAAACTCCT-AAAGATAGGAT
1 CTACTAGGATTTAAACTCCTAAAAG-TAGGAT
47586 CCACAAGCAC
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
36 3 0.05
37 55 0.95
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.31
Consensus pattern (37 bp):
CTACTAGGATTTAAACTCCTAAAAGTAGGATAGAATT
Found at i:48203 original size:11 final size:10
Alignment explanation
Indices: 48135--48268 Score: 52
Period size: 9 Copynumber: 13.6 Consensus size: 10
48125 TCTTTTCATT
48135 TTTATTATTA
1 TTTATTATTA
*
48145 -CTATTA-TA
1 TTTATTATTA
48153 TTTATTATTA
1 TTTATTATTA
*
48163 TTT-TTACTA
1 TTTATTATTA
*
48172 TTATATT-TTCCT
1 TT-TATTATT--A
48184 TTTATTATTA
1 TTTATTATTA
*
48194 TTTATATATTT
1 TTTAT-TATTA
* *
48205 TTTACT-TTC
1 TTTATTATTA
* **
48214 TCT-TTCGT-
1 TTTATTATTA
*
48222 TTTATTATTC
1 TTTATTATTA
48232 TTGTATTATTA
1 TT-TATTATTA
48243 CTTGTATTATT-
1 -TT-TATTATTA
48254 TTTA-TATTA
1 TTTATTATTA
48263 TTTATT
1 TTTATT
48269 TTGTTATATA
Statistics
Matches: 93, Mismatches: 16, Indels: 30
0.67 0.12 0.22
Matches are distributed among these distances:
8 9 0.10
9 31 0.33
10 18 0.19
11 21 0.23
12 14 0.15
ACGTcount: A:0.23, C:0.07, G:0.02, T:0.67
Consensus pattern (10 bp):
TTTATTATTA
Found at i:48248 original size:12 final size:11
Alignment explanation
Indices: 48224--48264 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
48214 TCTTTCGTTT
48224 TATTATTCTTG
1 TATTATTCTTG
48235 TATTATTACTTG
1 TATTATT-CTTG
* *
48247 TATTATTTTTA
1 TATTATTCTTG
48258 TATTATT
1 TATTATT
48265 TATTTTGTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
11 16 0.59
12 11 0.41
ACGTcount: A:0.24, C:0.05, G:0.05, T:0.66
Consensus pattern (11 bp):
TATTATTCTTG
Found at i:48504 original size:2 final size:2
Alignment explanation
Indices: 48497--48523 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
48487 TTACTATTAT
48497 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
48524 TCTACACAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:48943 original size:39 final size:37
Alignment explanation
Indices: 48883--48955 Score: 85
Period size: 39 Copynumber: 1.9 Consensus size: 37
48873 ATTATTTGTT
* *
48883 TTTTACTTACTATTTTATCTTTGCTTTCTTAATTTATCA
1 TTTTACTTAATATTTTATCTTT-CATT-TTAATTTATCA
*
48922 TTTTACTTAAT-TTGTTTTCTTTCATTTTAATTTA
1 TTTTACTTAATATT-TTATCTTTCATTTTAATTTA
48956 ATTAATTAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
37 8 0.27
38 5 0.17
39 17 0.57
ACGTcount: A:0.21, C:0.12, G:0.03, T:0.64
Consensus pattern (37 bp):
TTTTACTTAATATTTTATCTTTCATTTTAATTTATCA
Found at i:53505 original size:15 final size:15
Alignment explanation
Indices: 53485--53545 Score: 59
Period size: 15 Copynumber: 4.0 Consensus size: 15
53475 ATTCAATCAG
* *
53485 AACAAAAAGGGAAAA
1 AACAAAAAAGAAAAA
53500 AACAAAAAAGAAAAA
1 AACAAAAAAGAAAAA
* *
53515 AAGAAAAAAAGCAAAA
1 AA-CAAAAAAGAAAAA
* *
53531 AAGAAGAAAGAAAAA
1 AACAAAAAAGAAAAA
53546 GAAAGAACAA
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
15 25 0.66
16 13 0.34
ACGTcount: A:0.80, C:0.05, G:0.15, T:0.00
Consensus pattern (15 bp):
AACAAAAAAGAAAAA
Found at i:53516 original size:24 final size:25
Alignment explanation
Indices: 53483--53571 Score: 80
Period size: 24 Copynumber: 3.6 Consensus size: 25
53473 AGATTCAATC
*
53483 AGAACAAAAAGGGAAAAAA-CAAAAA
1 AGAACAAAAA-GAAAAAAAGCAAAAA
53508 AGAA-AAAAAGAAAAAAAGCAAAAA
1 AGAACAAAAAGAAAAAAAGCAAAAA
* *
53532 AGAAGAAAGAA-AAAGAAAG-AACAAA
1 AGAACAAA-AAGAAAAAAAGCAA-AAA
*
53557 A-ATCAAAAAGAAAAA
1 AGAACAAAAAGAAAAA
53572 GGGACAAAAA
Statistics
Matches: 54, Mismatches: 5, Indels: 11
0.77 0.07 0.16
Matches are distributed among these distances:
23 9 0.17
24 25 0.46
25 18 0.33
26 2 0.04
ACGTcount: A:0.79, C:0.06, G:0.15, T:0.01
Consensus pattern (25 bp):
AGAACAAAAAGAAAAAAAGCAAAAA
Found at i:53524 original size:16 final size:15
Alignment explanation
Indices: 53496--53545 Score: 64
Period size: 15 Copynumber: 3.3 Consensus size: 15
53486 ACAAAAAGGG
*
53496 AAAAAACAAAAAAGA
1 AAAAAAGAAAAAAGA
*
53511 AAAAAAGAAAAAAAGC
1 AAAAAAG-AAAAAAGA
*
53527 AAAAAAGAAGAAAGA
1 AAAAAAGAAAAAAGA
53542 AAAA
1 AAAA
53546 GAAAGAACAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
15 16 0.53
16 14 0.47
ACGTcount: A:0.84, C:0.04, G:0.12, T:0.00
Consensus pattern (15 bp):
AAAAAAGAAAAAAGA
Found at i:53571 original size:7 final size:7
Alignment explanation
Indices: 53495--53571 Score: 59
Period size: 7 Copynumber: 10.9 Consensus size: 7
53485 AACAAAAAGG
53495 GAAAAAA
1 GAAAAAA
*
53502 CAAAAAA
1 GAAAAAA
53509 GAAAAAAA
1 G-AAAAAA
53517 GAAAAAAA
1 G-AAAAAA
53525 GCAAAAAA
1 G-AAAAAA
*
53533 GAAGAAA
1 GAAAAAA
53540 G-AAAAA
1 GAAAAAA
*
53546 GAAAGAA
1 GAAAAAA
*
53553 -CAAAAA
1 GAAAAAA
**
53559 TCAAAAA
1 GAAAAAA
53566 GAAAAA
1 GAAAAA
53572 GGGACAAAAA
Statistics
Matches: 57, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
6 9 0.16
7 26 0.46
8 22 0.39
ACGTcount: A:0.81, C:0.05, G:0.13, T:0.01
Consensus pattern (7 bp):
GAAAAAA
Found at i:54199 original size:22 final size:22
Alignment explanation
Indices: 54174--54246 Score: 103
Period size: 22 Copynumber: 3.3 Consensus size: 22
54164 GCTACCCCAT
*
54174 CAAACCGT-TGAGCAACAAATGC
1 CAAACC-TATGAGCATCAAATGC
*
54196 CAAACCTATGAGCATCACATGC
1 CAAACCTATGAGCATCAAATGC
*
54218 CAAACCTATGAGCATCAAAGGC
1 CAAACCTATGAGCATCAAATGC
54240 CAAACCT
1 CAAACCT
54247 TTGACCAAAC
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
21 1 0.02
22 45 0.98
ACGTcount: A:0.40, C:0.30, G:0.15, T:0.15
Consensus pattern (22 bp):
CAAACCTATGAGCATCAAATGC
Found at i:55278 original size:106 final size:106
Alignment explanation
Indices: 55075--56555 Score: 1968
Period size: 106 Copynumber: 14.0 Consensus size: 106
55065 ATATCGTGCC
* * * * * * *
55075 ACTCAAGACAACACAAGTTCAACTTCGCAATGAAGGGA-CGACTGGTTGTTAAC-AACAATTTTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCG-CTGGTTGTCAACAAACAATTTCC
* * *
55138 TAATTTCGGAGCCAATTTCAACTTCATAGCGAAGGATATTGG
65 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
*
55180 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCC
* *
55245 AATTTTAGATCCAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * *
55286 ACTCCAGACAACACAAGTTCAACTTCACGATGAAGGGACCGCTGGTTGTCAATAAACAACTTT-C
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAA-TTTCC
* *
55350 CAATTTCAGTGCCAATTTTAACTTCACAGCGAAGGATATTGG
65 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * * * *
55392 ACTCCAGACAACGCAAGTTCAACTTCACGATGAAAGGATCGCTGGTTGTCAACAAACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCC
* *
55457 AATTTAAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * * * *
55498 ACTCCAGACAACGCAAGTTCAACTTCACAACGAAGGGACCGCTGGATCTCAATAAACAACTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCC
55563 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * * *
55604 ACTCCAGACAACGCAAGTTCAACTTCACAACGAAGGGACTGCTGGTTGTCAACAAACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCC
**
55669 AATTTCAGAGCCAATTTCAACTTCACAATGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
*
55710 ACTCCAGACAACTG-AAGTTCAACTTCACGACGAAGGGACCGTTGGTTGTCAACAAACAACTTT-
1 ACTCCAGACAAC-GCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAA-TTTC
* *
55773 TCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
64 CCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * *
55816 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCACTGGTTGTCAACAAACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCC
*
55881 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
*
55922 ACTCCAGAAAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCC
*
55987 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * * * *
56028 CCTCAAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAAGAAAACAACTTCT
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAA-CAAACAATTTCC
* * * *
56093 TAATTTTAGAGCCAATTTCAACTTCACAACGAATGATATTGG
65 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * *
56135 ACTCCAAACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTTCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCC
* *
56200 AATTTCAGAGCCAATTTC-ACTTCATAGCGTAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * *
56240 ACT-CATGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAATAACTTCC
1 ACTCCA-GACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCC
** * *
56304 CAATTTCAGAGCCAATTTCAACTTCTTAGCGAAGGATCTTGA
65 CAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* ** * * * * * *
56346 AC-CAAAGGTAACACAAGCTCTACTTCACGATGAAGAGG-CGGCTGATTGTCAAC-AA-AATTT-
1 ACTC-CAGACAACGCAAGTTCAACTTCACGACGAAG-GGACCGCTGGTTGTCAACAAACAATTTC
*
56406 -C-A-TTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGG
64 CCAATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * ** * * * * *
56446 ACACGATTCGACACAAGTTCAACTTCACAACGAAGGGACAGCTGGTTCTCAACAAACAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCC
** * *
56511 GGTTCCAGAGCCAATTTCAACTTCAC-GACGGAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAG-CGAAGGATATTGG
56552 ACTC
1 ACTC
56556 AGAACAATGC
Statistics
Matches: 1232, Mismatches: 121, Indels: 45
0.88 0.09 0.03
Matches are distributed among these distances:
99 2 0.00
100 69 0.06
101 4 0.00
102 6 0.00
104 7 0.01
105 145 0.12
106 893 0.72
107 106 0.09
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.24
Consensus pattern (106 bp):
ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCC
AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
Found at i:57338 original size:37 final size:37
Alignment explanation
Indices: 57285--57389 Score: 156
Period size: 37 Copynumber: 2.8 Consensus size: 37
57275 CCTTTTCGTC
*
57285 CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
1 CTACTAGGATTTAAACTCCTAAAAATAGGATAGAATT
* * *
57322 TTTCTAGGATTTAAACTCCTAAAAATAGGATAGAGTT
1 CTACTAGGATTTAAACTCCTAAAAATAGGATAGAATT
* *
57359 CTACTATGATTTAAACTCCTAAAGATAGGAT
1 CTACTAGGATTTAAACTCCTAAAAATAGGAT
57390 CCACAAGCAC
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.31
Consensus pattern (37 bp):
CTACTAGGATTTAAACTCCTAAAAATAGGATAGAATT
Found at i:58018 original size:13 final size:12
Alignment explanation
Indices: 58001--58043 Score: 52
Period size: 13 Copynumber: 3.6 Consensus size: 12
57991 TTCTACTTAT
58001 TTATATTATATA
1 TTATATTATATA
*
58013 TGTATATTTTATA
1 T-TATATTATATA
*
58026 TTTTATTAT-TA
1 TTATATTATATA
58037 TTATATT
1 TTATATT
58044 TTTACTTTCT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
11 8 0.31
12 7 0.27
13 11 0.42
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (12 bp):
TTATATTATATA
Found at i:58104 original size:11 final size:11
Alignment explanation
Indices: 58063--58103 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
58053 TCTTTCGTTT
58063 TATTATTCTTG
1 TATTATTCTTG
58074 TATTATTACTTG
1 TATTATT-CTTG
* *
58086 TATTATTTTTA
1 TATTATTCTTG
58097 TATTATT
1 TATTATT
58104 TATTTTGTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
11 16 0.59
12 11 0.41
ACGTcount: A:0.24, C:0.05, G:0.05, T:0.66
Consensus pattern (11 bp):
TATTATTCTTG
Found at i:58119 original size:2 final size:2
Alignment explanation
Indices: 58112--58148 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
58102 TTTATTTTGT
58112 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
58149 GCGTATGTTC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:58737 original size:27 final size:26
Alignment explanation
Indices: 58602--58739 Score: 65
Period size: 27 Copynumber: 5.1 Consensus size: 26
58592 AATTTATTAA
58602 TTTATATATA-TTTACTT-TTTTATTTAT
1 TTTATATATATTTTA-TTATTTT-TTT-T
* *
58629 TTTATATATATATATATTATTCTTACTTT
1 TTTATATATAT-TTTATTATT-TT-TTTT
* * *
58658 ATTAT-TATTATTTTGTTTATTTGTTTTA
1 TTTATATA-TATTTT-ATTATTT-TTTTT
*
58686 TTTAT-T-T-TCTTT-TTCTTTTTCTTT
1 TTTATATATAT-TTTATTATTTTT-TTT
58710 TTTATATATATTTTATTATTTGTTTTT
1 TTTATATATATTTTATTATTT-TTTTT
58737 TTT
1 TTT
58740 TACTTACTAT
Statistics
Matches: 86, Mismatches: 11, Indels: 28
0.69 0.09 0.22
Matches are distributed among these distances:
23 2 0.02
24 12 0.14
25 2 0.02
26 8 0.09
27 22 0.26
28 16 0.19
29 19 0.22
30 5 0.06
ACGTcount: A:0.21, C:0.04, G:0.02, T:0.72
Consensus pattern (26 bp):
TTTATATATATTTTATTATTTTTTTT
Found at i:58738 original size:28 final size:29
Alignment explanation
Indices: 58657--58754 Score: 76
Period size: 30 Copynumber: 3.3 Consensus size: 29
58647 ATTCTTACTT
*
58657 TATTATTATTATTTTGTTTATTTGTTT-TATT
1 TATT-TTATTA-TTTGTTTATTT-TTTATATA
* * * *
58688 TATTTTCTTTTTCTTTTTCTTTTTTATATA
1 TATTTTATTATT-TGTTTATTTTTTATATA
58718 TATTTTATTATTTGTTT-TTTTTTACT-TA
1 TATTTTATTATTTGTTTATTTTTTA-TATA
58746 CTATTTTAT
1 -TATTTTAT
58755 CTTTGCTTTC
Statistics
Matches: 55, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
28 9 0.16
29 18 0.33
30 24 0.44
31 4 0.07
ACGTcount: A:0.17, C:0.05, G:0.03, T:0.74
Consensus pattern (29 bp):
TATTTTATTATTTGTTTATTTTTTATATA
Found at i:58759 original size:28 final size:27
Alignment explanation
Indices: 58695--58759 Score: 64
Period size: 28 Copynumber: 2.4 Consensus size: 27
58685 ATTTATTTTC
58695 TTTT-TCTTT-TTCTTTTTTATATATA
1 TTTTATCTTTGTTCTTTTTTATATATA
* *
58720 TTTTATTATTTGTTTTTTTTTACT-TACTA
1 TTTTA-TCTTTGTTCTTTTTTA-TATA-TA
58749 TTTTATCTTTG
1 TTTTATCTTTG
58760 CTTTCTTAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
25 4 0.12
27 4 0.12
28 16 0.50
29 8 0.25
ACGTcount: A:0.15, C:0.08, G:0.03, T:0.74
Consensus pattern (27 bp):
TTTTATCTTTGTTCTTTTTTATATATA
Found at i:64584 original size:45 final size:45
Alignment explanation
Indices: 64535--64684 Score: 234
Period size: 45 Copynumber: 3.4 Consensus size: 45
64525 AAATAGTGGT
*
64535 TTAGGAAATAAGTTTGGTAATGTCGGTAATAGCTCCAACATAGTC
1 TTAGGAAATAAGTTGGGTAATGTCGGTAATAGCTCCAACATAGTC
*
64580 TTAGGAAATAAGTTGGGTAATGTTGGTAATAGCTCCAACATAGTC
1 TTAGGAAATAAGTTGGGTAATGTCGGTAATAGCTCCAACATAGTC
64625 TTAGGAAATAAGTTGGGTAATG-CTGGTAATAGCTCCAACATAG--
1 TTAGGAAATAAGTTGGGTAATGTC-GGTAATAGCTCCAACATAGTC
*
64668 TAAGAGAAATAAGTTGG
1 TTAG-GAAATAAGTTGG
64685 AATTCCAACA
Statistics
Matches: 99, Mismatches: 4, Indels: 5
0.92 0.04 0.05
Matches are distributed among these distances:
43 3 0.03
44 12 0.12
45 84 0.85
ACGTcount: A:0.35, C:0.11, G:0.25, T:0.29
Consensus pattern (45 bp):
TTAGGAAATAAGTTGGGTAATGTCGGTAATAGCTCCAACATAGTC
Found at i:76615 original size:138 final size:139
Alignment explanation
Indices: 76427--76778 Score: 390
Period size: 138 Copynumber: 2.5 Consensus size: 139
76417 ATCAAAAATG
* * * * *
76427 AATTTTATCAATTTATTAAATCGAATAATTAATATGGAACCTCGGGCATAAAAGTGAGAACCAAA
1 AATTTTAACAAATTATTGAATCAAATAATTAATATGGAACCTCAGGCATAAAAGTGAGAACCAAA
* ** * * *
76492 TAAAAAATTCACTTAAAGTAAAGGACTATGGTGAAGTT-AATCTAAAAGGGAGGCTCTAA-TACT
66 TAAAAAATTCACCT-AAGTAAAGGACTAAAGTGAAATTAAACCTAAAAGGAAGGCTCTAATTACT
*
76555 AATCCTAACC
130 AATCATAACC
* * * * * *
76565 AATTTTAATAAATTATTGAATCAAATAATTAATATGGAACTTCAGGCATAAACGCGAGGATCAAA
1 AATTTTAACAAATTATTGAATCAAATAATTAATATGGAACCTCAGGCATAAAAGTGAGAACCAAA
* * * * * *
76630 -ATAATAATCCACCTAATTAAAGGACTAAAGTGAAATTAAACCTAATATGAAGGCTCTAATTATT
66 TA-AAAAATTCACCTAAGTAAAGGACTAAAGTGAAATTAAACCTAAAAGGAAGGCTCTAATTACT
76694 AATCATAACC
130 AATCATAACC
*
76704 AATTTTAACAAATTATTGGAT-AGAATAATTAATATGGAACCTCAGGCATAAAAGTGA-ATACCA
1 AATTTTAACAAATTATTGAATCA-AATAATTAATATGGAACCTCAGGCATAAAAGTGAGA-ACCA
**
76767 AATCGAAAATTC
64 AATAAAAAATTC
76779 TCCCAAGTTA
Statistics
Matches: 173, Mismatches: 35, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
137 20 0.12
138 81 0.47
139 72 0.42
ACGTcount: A:0.45, C:0.13, G:0.13, T:0.28
Consensus pattern (139 bp):
AATTTTAACAAATTATTGAATCAAATAATTAATATGGAACCTCAGGCATAAAAGTGAGAACCAAA
TAAAAAATTCACCTAAGTAAAGGACTAAAGTGAAATTAAACCTAAAAGGAAGGCTCTAATTACTA
ATCATAACC
Found at i:76831 original size:23 final size:23
Alignment explanation
Indices: 76802--76848 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
76792 ACCTTAGCGA
76802 TTAAATTAAAAAGAAACTAAATT
1 TTAAATTAAAAAGAAACTAAATT
*
76825 TTAAATTAAAAGGAAACTAAATT
1 TTAAATTAAAAAGAAACTAAATT
76848 T
1 T
76849 AAGGACATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.57, C:0.04, G:0.06, T:0.32
Consensus pattern (23 bp):
TTAAATTAAAAAGAAACTAAATT
Found at i:77111 original size:29 final size:29
Alignment explanation
Indices: 77056--77111 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
77046 AAATGCATAA
* *
77056 AAAATATTAGAAATTAAAGAACTGAAAGT
1 AAAATACTAGAAATTAAAGAAATGAAAGT
*
77085 AAAATACTGGAAATTAAA-AAATAGAAA
1 AAAATACTAGAAATTAAAGAAAT-GAAA
77112 ATTAATGGGT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 3 0.13
29 20 0.87
ACGTcount: A:0.62, C:0.04, G:0.12, T:0.21
Consensus pattern (29 bp):
AAAATACTAGAAATTAAAGAAATGAAAGT
Found at i:79549 original size:41 final size:42
Alignment explanation
Indices: 79504--79583 Score: 110
Period size: 41 Copynumber: 1.9 Consensus size: 42
79494 ACACGGTTTC
*
79504 CAAATTCGCAACACAAAATTTG-GAA-TTCGCAACACAAAAAT
1 CAAATTCGCAACAC-AAATTTGACAATTTCGCAACACAAAAAT
* *
79545 CAAATTCGCAACTCGAATTTGACAATTTCGCAACACAAA
1 CAAATTCGCAACACAAATTTGACAATTTCGCAACACAAA
79584 TTTCTTTTTC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
40 6 0.18
41 15 0.44
42 13 0.38
ACGTcount: A:0.45, C:0.24, G:0.10, T:0.21
Consensus pattern (42 bp):
CAAATTCGCAACACAAATTTGACAATTTCGCAACACAAAAAT
Found at i:79552 original size:20 final size:21
Alignment explanation
Indices: 79504--79556 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
79494 ACACGGTTTC
*
79504 CAAATTCGCAACACAAAATTT
1 CAAATTCGCAACACAAAATAT
**
79525 GGAATTCGCAACACAAAA-AT
1 CAAATTCGCAACACAAAATAT
79545 CAAATTCGCAAC
1 CAAATTCGCAAC
79557 TCGAATTTGA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
20 11 0.41
21 16 0.59
ACGTcount: A:0.47, C:0.25, G:0.09, T:0.19
Consensus pattern (21 bp):
CAAATTCGCAACACAAAATAT
Found at i:79585 original size:22 final size:20
Alignment explanation
Indices: 79506--79586 Score: 74
Period size: 20 Copynumber: 3.9 Consensus size: 20
79496 ACGGTTTCCA
*
79506 AATTCGCAACACAAAATTTGG
1 AATTCGCAACAC-AAATTTGC
**
79527 AATTCGCAACACAAAAAT-C
1 AATTCGCAACACAAATTTGC
* *
79546 AAATTCGCAACTCGAATTTGAC
1 -AATTCGCAACACAAATTTG-C
79568 AATTTCGCAACACAAATTT
1 AA-TTCGCAACACAAATTT
79587 CTTTTTCGCA
Statistics
Matches: 47, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
20 18 0.38
21 14 0.30
22 15 0.32
ACGTcount: A:0.43, C:0.22, G:0.10, T:0.25
Consensus pattern (20 bp):
AATTCGCAACACAAATTTGC
Found at i:79613 original size:20 final size:20
Alignment explanation
Indices: 79568--79757 Score: 149
Period size: 20 Copynumber: 9.5 Consensus size: 20
79558 CGAATTTGAC
*
79568 AATTTCGCAACACAAATTTCTT
1 AATTTCGCAACAC-GATTT-TT
79590 --TTTCGCAACACGATTTTT
1 AATTTCGCAACACGATTTTT
* * *
79608 AATTTCGCAACTCAATTTTCG
1 AATTTCGCAACACGATTTT-T
79629 AA-TTCGCAACACGATTTTCT
1 AATTTCGCAACACGATTTT-T
*
79649 AA-TTCGCAAAGCACG--TTTC
1 AATTTCGC-AA-CACGATTTTT
* *
79668 AATTTCGCAACTCGAATTTT
1 AATTTCGCAACACGATTTTT
* * *
79688 ATTTTCGCAACTCGATTTTC
1 AATTTCGCAACACGATTTTT
* * *
79708 AAATTCGCAGCACGAATTTT
1 AATTTCGCAACACGATTTTT
* *
79728 AATTTCGCAACATGAATTTT
1 AATTTCGCAACACGATTTTT
79748 AATTTCGCAA
1 AATTTCGCAA
79758 AACAAATGTA
Statistics
Matches: 138, Mismatches: 22, Indels: 18
0.78 0.12 0.10
Matches are distributed among these distances:
18 5 0.04
19 8 0.06
20 117 0.85
21 4 0.03
22 4 0.03
ACGTcount: A:0.31, C:0.22, G:0.11, T:0.37
Consensus pattern (20 bp):
AATTTCGCAACACGATTTTT
Found at i:79635 original size:40 final size:39
Alignment explanation
Indices: 79547--79757 Score: 174
Period size: 40 Copynumber: 5.2 Consensus size: 39
79537 ACAAAAATCA
* * * *
79547 AATTCGCAACTCGAATTTGACAATTTCGCAACACAAATTTC
1 AATTCGCAACACGAATTT--TAATTTCGCAACTCAATTTTC
** *
79588 TTTTTCGCAACACGATTTTTAATTTCGCAACTCAATTTTC
1 -AATTCGCAACACGAATTTTAATTTCGCAACTCAATTTTC
* ** **
79628 GAATTCGCAACACGATTTTCTAA-TTCGCAAAGCACGTTTC
1 -AATTCGCAACACGAATTT-TAATTTCGCAACTCAATTTTC
* * *
79668 AATTTCGCAACTCGAATTTTATTTTCGCAACTCGATTTTC
1 AA-TTCGCAACACGAATTTTAATTTCGCAACTCAATTTTC
* *
79708 AAATTCGCAGCACGAATTTTAATTTCGCAACATGAATTTT-
1 -AATTCGCAACACGAATTTTAATTTCGCAAC-TCAATTTTC
79748 AATTTCGCAA
1 AA-TTCGCAA
79758 AACAAATGTA
Statistics
Matches: 135, Mismatches: 28, Indels: 14
0.76 0.16 0.08
Matches are distributed among these distances:
39 6 0.04
40 104 0.77
41 11 0.08
42 14 0.10
ACGTcount: A:0.31, C:0.22, G:0.11, T:0.36
Consensus pattern (39 bp):
AATTCGCAACACGAATTTTAATTTCGCAACTCAATTTTC
Found at i:79655 original size:60 final size:59
Alignment explanation
Indices: 79549--79757 Score: 203
Period size: 60 Copynumber: 3.5 Consensus size: 59
79539 AAAAATCAAA
* * * **
79549 TTCGCAACTCGAATTTGACAATTTCGCAACACAAATTTCTTTTTCGCAACACGATTTTTAAT
1 TTCGCAACTCGAATTT-TCAA-TTCGCAACACGATTTTCTAATTCGCAACACGA-TTTTAAT
*
79611 TTCGCAACTC-AATTTTCGAATTCGCAACACGATTTTCTAATTCGCAAAGCACG-TTTCAAT
1 TTCGCAACTCGAATTTTC-AATTCGCAACACGATTTTCTAATTCGC-AA-CACGATTTTAAT
* * * *
79671 TTCGCAACTCGAATTTT-ATTTTCGCAACTCGATTTTCAAATTCGCAGCACGAATTTTAAT
1 TTCGCAACTCGAATTTTCA-ATTCGCAACACGATTTTCTAATTCGCAACACG-ATTTTAAT
79731 TTCGCAACAT-GAATTTT-AATTTCGCAA
1 TTCGCAAC-TCGAATTTTCAA-TTCGCAA
79758 AACAAATGTA
Statistics
Matches: 126, Mismatches: 12, Indels: 20
0.80 0.08 0.13
Matches are distributed among these distances:
58 4 0.03
59 2 0.02
60 90 0.71
61 16 0.13
62 14 0.11
ACGTcount: A:0.30, C:0.22, G:0.11, T:0.36
Consensus pattern (59 bp):
TTCGCAACTCGAATTTTCAATTCGCAACACGATTTTCTAATTCGCAACACGATTTTAAT
Found at i:79864 original size:16 final size:16
Alignment explanation
Indices: 79845--79875 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
79835 TCTCTCACTC
79845 TCTCCGGCGACATCCA
1 TCTCCGGCGACATCCA
*
79861 TCTCCGGTGACATCC
1 TCTCCGGCGACATCC
79876 GTCCCCATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.42, G:0.19, T:0.23
Consensus pattern (16 bp):
TCTCCGGCGACATCCA
Found at i:80293 original size:20 final size:19
Alignment explanation
Indices: 80264--80321 Score: 54
Period size: 19 Copynumber: 3.3 Consensus size: 19
80254 TTCCCAACAC
80264 GAAATCGCAACTCGAAAAT
1 GAAATCGCAACTCGAAAAT
*
80283 GAAATTCGCAA--C-ACAA-
1 GAAA-TCGCAACTCGAAAAT
*
80299 -AAAGCGCAACTCGAAAAT
1 GAAATCGCAACTCGAAAAT
80317 GAAAT
1 GAAAT
80322 TCGCGTTGCG
Statistics
Matches: 29, Mismatches: 4, Indels: 12
0.64 0.09 0.27
Matches are distributed among these distances:
14 5 0.17
15 3 0.10
16 1 0.03
17 6 0.21
18 1 0.03
19 7 0.24
20 6 0.21
ACGTcount: A:0.50, C:0.21, G:0.16, T:0.14
Consensus pattern (19 bp):
GAAATCGCAACTCGAAAAT
Found at i:80312 original size:34 final size:33
Alignment explanation
Indices: 80251--80325 Score: 114
Period size: 34 Copynumber: 2.2 Consensus size: 33
80241 CTTGAAACTT
* * *
80251 AAATTCCCAACACGAAATCGCAACTCGAAAATG
1 AAATTCGCAACACAAAAGCGCAACTCGAAAATG
80284 AAATTCGCAACACAAAAAGCGCAACTCGAAAATG
1 AAATTCGCAACAC-AAAAGCGCAACTCGAAAATG
80318 AAATTCGC
1 AAATTCGC
80326 GTTGCGAATT
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
33 12 0.32
34 26 0.68
ACGTcount: A:0.47, C:0.25, G:0.13, T:0.15
Consensus pattern (33 bp):
AAATTCGCAACACAAAAGCGCAACTCGAAAATG
Found at i:80341 original size:20 final size:20
Alignment explanation
Indices: 80318--80355 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
80308 CTCGAAAATG
80318 AAATTCG-CGTTGCGAATTCA
1 AAATTCGAC-TTGCGAATTCA
80338 AAATTCGACTTGCGAATT
1 AAATTCGACTTGCGAATT
80356 TCATTTTCGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 16 0.94
21 1 0.06
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (20 bp):
AAATTCGACTTGCGAATTCA
Found at i:82001 original size:20 final size:20
Alignment explanation
Indices: 81942--82258 Score: 257
Period size: 20 Copynumber: 15.9 Consensus size: 20
81932 TATGAAATTA
* ***
81942 AAATTCGTGTTACGAATTCG
1 AAATTCGTGTTGCGAAAAAG
* * *
81962 AAAATCGAGTTGCGAGAAAG
1 AAATTCGTGTTGCGAAAAAG
*
81982 AAATTCGTGTTACGAAAAAG
1 AAATTCGTGTTGCGAAAAAG
82002 AAATTCGTGTTGCGAAAAAG
1 AAATTCGTGTTGCGAAAAAG
* ***
82022 AAATTCATGTTGCGAATTTG
1 AAATTCGTGTTGCGAAAAAG
* *
82042 AAAATCGAGTTGCGAAAAAG
1 AAATTCGTGTTGCGAAAAAG
82062 AAATTCGTGTTGCGAAAAAG
1 AAATTCGTGTTGCGAAAAAG
* * *
82082 AAAATCTTGTTGCGAAAAAT
1 AAATTCGTGTTGCGAAAAAG
*
82102 AAATTCGTGTTGCAAAAAAG
1 AAATTCGTGTTGCGAAAAAG
* **
82122 AAATTCATGTTGC-AAATTCG
1 AAATTCGTGTTGCGAAA-AAG
* * * *
82142 AAAATCGAGTTGCGAAATTAT
1 AAATTCGTGTTGCGAAA-AAG
82163 AAA-TCGTGTTGCGAAAAAG
1 AAATTCGTGTTGCGAAAAAG
***
82182 AAATTCGTGTTGCGAATTCG
1 AAATTCGTGTTGCGAAAAAG
** **
82202 AAAAACGACTTGCGAAATTAA-
1 AAATTCGTGTTGCGAAA--AAG
*
82223 AAA-TCGTGTTGTGAAAAAG
1 AAATTCGTGTTGCGAAAAAG
*
82242 AAAATCGTGTTGC-AAAA
1 AAATTCGTGTTGCGAAAA
82259 TTGTCAAATT
Statistics
Matches: 233, Mismatches: 57, Indels: 15
0.76 0.19 0.05
Matches are distributed among these distances:
18 2 0.01
19 14 0.06
20 206 0.88
21 11 0.05
ACGTcount: A:0.41, C:0.11, G:0.21, T:0.26
Consensus pattern (20 bp):
AAATTCGTGTTGCGAAAAAG
Found at i:82297 original size:20 final size:20
Alignment explanation
Indices: 82272--82365 Score: 84
Period size: 19 Copynumber: 4.7 Consensus size: 20
82262 TCAAATTCGA
* *
82272 GTTGCGAATTTGACTTCTGT
1 GTTGCGAATTCGAATTCTGT
*
82292 GTTGCGAATTCCAAATTCTGT
1 GTTGCGAATT-CGAATTCTGT
* *
82313 GTTGCGAAATTGGAGTTC-GT
1 GTTGCG-AATTCGAATTCTGT
* *
82333 GTTGCGAATTCGAAATC-GA
1 GTTGCGAATTCGAATTCTGT
*
82352 GTTACGAATTCGAA
1 GTTGCGAATTCGAA
82366 ATCGAGTTAC
Statistics
Matches: 61, Mismatches: 11, Indels: 5
0.79 0.14 0.06
Matches are distributed among these distances:
19 22 0.36
20 18 0.30
21 17 0.28
22 4 0.07
ACGTcount: A:0.24, C:0.15, G:0.26, T:0.35
Consensus pattern (20 bp):
GTTGCGAATTCGAATTCTGT
Found at i:82319 original size:41 final size:40
Alignment explanation
Indices: 82263--82359 Score: 117
Period size: 41 Copynumber: 2.4 Consensus size: 40
82253 GCAAAATTGT
*
82263 CAAATTCGAGTTGCG-AATTTGACTTCTGTGTTGCGAATTC
1 CAAATTCGAGTTGCGAAATTGGACTTC-GTGTTGCGAATTC
* *
82303 CAAATTCTGTGTTGCGAAATTGGAGTTCGTGTTGCGAATTC
1 CAAATTC-GAGTTGCGAAATTGGACTTCGTGTTGCGAATTC
* *
82344 GAAA-TCGAGTTACGAA
1 CAAATTCGAGTTGCGAA
82360 TTCGAAATCG
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
39 8 0.16
40 9 0.18
41 23 0.47
42 9 0.18
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (40 bp):
CAAATTCGAGTTGCGAAATTGGACTTCGTGTTGCGAATTC
Found at i:82359 original size:19 final size:19
Alignment explanation
Indices: 82337--82382 Score: 92
Period size: 19 Copynumber: 2.4 Consensus size: 19
82327 GTTCGTGTTG
82337 CGAATTCGAAATCGAGTTA
1 CGAATTCGAAATCGAGTTA
82356 CGAATTCGAAATCGAGTTA
1 CGAATTCGAAATCGAGTTA
82375 CGAATTCG
1 CGAATTCG
82383 TTGGTTATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.26
Consensus pattern (19 bp):
CGAATTCGAAATCGAGTTA
Found at i:85890 original size:45 final size:45
Alignment explanation
Indices: 85779--85897 Score: 211
Period size: 45 Copynumber: 2.6 Consensus size: 45
85769 TTATGTGTTT
* * *
85779 GTGTGCATTTCATAAAATATAAATAATTTATTATTATTTCGTGCA
1 GTGTGCATTTCATAAAATATACACATTTTATTATTATTTCGTGCA
85824 GTGTGCATTTCATAAAATATACACATTTTATTATTATTTCGTGCA
1 GTGTGCATTTCATAAAATATACACATTTTATTATTATTTCGTGCA
85869 GTGTGCATTTCATAAAATATACACATTTT
1 GTGTGCATTTCATAAAATATACACATTTT
85898 TTGTGCATTG
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 71 1.00
ACGTcount: A:0.34, C:0.12, G:0.11, T:0.44
Consensus pattern (45 bp):
GTGTGCATTTCATAAAATATACACATTTTATTATTATTTCGTGCA
Found at i:91206 original size:86 final size:86
Alignment explanation
Indices: 91052--91393 Score: 540
Period size: 86 Copynumber: 4.0 Consensus size: 86
91042 AAGAACATCT
* *
91052 CACATGACTTTCCCATGAAGGGGAGTCATTCAAAGATCATCTCACCTGGTTCAGACCCGCTAAAG
1 CACATGACTTTCCCATGAAGGGGAGTCATCCAAAGATCATCTCACCTGGTTCAGACCCGCTAAGG
*
91117 GGAACCACCTAAGGAATATAC
66 GGAACCACCTGAGGAATATAC
* * * *
91138 CACTTGACTTTCCCGTGAACGGGAGTCATCCAAAGATCATCTCACTTGGTTCAGACCCGCTAAGG
1 CACATGACTTTCCCATGAAGGGGAGTCATCCAAAGATCATCTCACCTGGTTCAGACCCGCTAAGG
91203 GGAACCACCTGAGGAATATAC
66 GGAACCACCTGAGGAATATAC
* *
91224 CACATAACTTTCCCATGAAGGGGAGTCATCCAAAGATCATCTCACCTAGTTCAGACCCGCTAAGG
1 CACATGACTTTCCCATGAAGGGGAGTCATCCAAAGATCATCTCACCTGGTTCAGACCCGCTAAGG
91289 GGAACCACCTGAGGAATATAC
66 GGAACCACCTGAGGAATATAC
* ** * *
91310 CACATGACTTTCTCATGAAGGAAAGTCATCCAAAGATCATCTCACCTGGTTCAGACCCGCGAATG
1 CACATGACTTTCCCATGAAGGGGAGTCATCCAAAGATCATCTCACCTGGTTCAGACCCGCTAAGG
* *
91375 GGAACCACATGAAGAATAT
66 GGAACCACCTGAGGAATAT
91394 CCATGAAGGG
Statistics
Matches: 234, Mismatches: 22, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
86 234 1.00
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.21
Consensus pattern (86 bp):
CACATGACTTTCCCATGAAGGGGAGTCATCCAAAGATCATCTCACCTGGTTCAGACCCGCTAAGG
GGAACCACCTGAGGAATATAC
Found at i:91692 original size:82 final size:83
Alignment explanation
Indices: 91502--91789 Score: 292
Period size: 82 Copynumber: 3.4 Consensus size: 83
91492 ATCTACCATA
* * * ** * * * * *
91502 AAAAAACCTTTGAGTTCGATTACATTCAGCTCAAGGACATATCAAATTTACAACATAACACAAGG
1 AAAAAACCTTTGAGTTCGATTCCATTCAACTCAAGGGCA-GCCAAATTCATAGCATAGCTCAAGG
** * *
91567 TAAGAAGGGTTATATGT-C
65 CGAGAAGGGCTATCTGTAC
* * *
91585 AATAAAAATCTTCGAGTTCGATTCCATTCAACTCAAGGGCAGCCAAATTCATAGCATAGCTCGAG
1 -A-AAAAACCTTTGAGTTCGATTCCATTCAACTCAAGGGCAGCCAAATTCATAGCATAGCTCAAG
*
91650 GCGAGAATGGCTATCTGT-C
64 GCGAGAAGGGCTATCTGTAC
* * *
91669 AACAAACCTTTGAGTTCGATTCCATTCAGCTCAAGGGCAGCCAAATTCATAGTATAGCTCAAGGC
1 AAAAAACCTTTGAGTTCGATTCCATTCAACTCAAGGGCAGCCAAATTCATAGCATAGCTCAAGGC
* *
91734 GATAAGGGCTATTTGTCAGC
66 GAGAAGGGCTATCTGT-A-C
* *
91754 AAAAAACCTTTGAGTTTGATTACATTCAACTCAAGG
1 AAAAAACCTTTGAGTTCGATTCCATTCAACTCAAGG
91790 ACGTATCAAA
Statistics
Matches: 169, Mismatches: 31, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
82 71 0.42
83 1 0.01
84 31 0.18
85 66 0.39
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.26
Consensus pattern (83 bp):
AAAAAACCTTTGAGTTCGATTCCATTCAACTCAAGGGCAGCCAAATTCATAGCATAGCTCAAGGC
GAGAAGGGCTATCTGTAC
Found at i:91899 original size:87 final size:86
Alignment explanation
Indices: 91502--91918 Score: 260
Period size: 82 Copynumber: 4.9 Consensus size: 86
91492 ATCTACCATA
* * * * * * * *
91502 AAAAAACCTTTGAGTTCGATTACATTCAGCTCAAGGACATATCAAATTTACAACATAACACAAGG
1 AAAAAACCTTTCAGTTCGATTACATTCAACTCAAGAACATATAAAATTGACAGCATAGCTCAAGG
* *
91567 TAAGAAGGGTTATATGTCA--
66 CAAGAAGGGCTATATGTCAGC
* * ** *** * * *
91586 ATAAAAATC-TTCGAGTTCGATTCCATTCAACTCAAGGGCA-GCCAAATTCATAGCATAGCTCGA
1 A-AAAAACCTTTC-AGTTCGATTACATTCAACTCAAGAACATATAAAATTGACAGCATAGCTCAA
* * *
91649 GGCGAGAATGGCTATCTGT---C
64 GGCAAGAAGGGCTATATGTCAGC
* * * * ** *** * * *
91669 AACAAACCTTTGAGTTCGATTCCATTCAGCTCAAGGGCA-GCCAAATTCATAGTATAGCTCAAGG
1 AAAAAACCTTTCAGTTCGATTACATTCAACTCAAGAACATATAAAATTGACAGCATAGCTCAAGG
* * *
91733 CGATAAGGGCTATTTGTCAGC
66 CAAGAAGGGCTATATGTCAGC
* * * * * * *
91754 AAAAAACCTTTGAGTTTGATTACATTCAACTCAAGGACGTATCAAATTTACAGTATAGCTCAAGG
1 AAAAAACCTTTCAGTTCGATTACATTCAACTCAAGAACATATAAAATTGACAGCATAGCTCAAGG
* *
91819 CAAGAAGGGTTATATGTTAGC
66 CAAGAAGGGCTATATGTCAGC
* *
91840 AAAAAAACC-TTCATGTTCGATTACACTT-AGCTCAAGAACATATAAAATTGACAGCATAGCTCG
1 -AAAAAACCTTTCA-GTTCGATTACA-TTCAACTCAAGAACATATAAAATTGACAGCATAGCTCA
* *
91903 ATGCAAAAAGGGCTAT
63 AGGCAAGAAGGGCTAT
91919 CTATCAACAA
Statistics
Matches: 268, Mismatches: 54, Indels: 19
0.79 0.16 0.06
Matches are distributed among these distances:
82 68 0.25
83 3 0.01
84 32 0.12
85 64 0.24
86 40 0.15
87 59 0.22
88 2 0.01
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.26
Consensus pattern (86 bp):
AAAAAACCTTTCAGTTCGATTACATTCAACTCAAGAACATATAAAATTGACAGCATAGCTCAAGG
CAAGAAGGGCTATATGTCAGC
Found at i:92557 original size:22 final size:23
Alignment explanation
Indices: 92532--92580 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 23
92522 TTCGTCCAAC
*
92532 ATTACATAATTTATTTATA-TAT
1 ATTACATAACTTATTTATAGTAT
** *
92554 ATTATGTGACTTATTTATAGTAT
1 ATTACATAACTTATTTATAGTAT
92577 ATTA
1 ATTA
92581 TATACGTATA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
22 15 0.68
23 7 0.32
ACGTcount: A:0.37, C:0.04, G:0.06, T:0.53
Consensus pattern (23 bp):
ATTACATAACTTATTTATAGTAT
Found at i:92594 original size:23 final size:22
Alignment explanation
Indices: 92543--92596 Score: 65
Period size: 22 Copynumber: 2.4 Consensus size: 22
92533 TTACATAATT
* *
92543 TATTTATATATATTATGTGACT
1 TATTTATATATATTATATGACG
92565 TATTTATAGTATATTATAT-ACG
1 TATTTATA-TATATTATATGACG
92587 TATATTATAT
1 TAT-TTATAT
92597 GAAATTTACA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 14 0.50
23 14 0.50
ACGTcount: A:0.35, C:0.04, G:0.07, T:0.54
Consensus pattern (22 bp):
TATTTATATATATTATATGACG
Found at i:93836 original size:45 final size:45
Alignment explanation
Indices: 93787--93921 Score: 216
Period size: 45 Copynumber: 3.0 Consensus size: 45
93777 TTATGTTTTT
*
93787 GTGTGCATTTCAGAAAATATACATATTTTATTATTATTTCGTGCA
1 GTGTGCATTTCATAAAATATACATATTTTATTATTATTTCGTGCA
*
93832 GTGTGCATTTCATAAAATATACACATTTTATTATTATTTCGTGCA
1 GTGTGCATTTCATAAAATATACATATTTTATTATTATTTCGTGCA
* * * *
93877 GTGTGCATTTCATAAAATATATATATATTATTGTTATTTCATGCA
1 GTGTGCATTTCATAAAATATACATATTTTATTATTATTTCGTGCA
93922 TTTTGTTCCC
Statistics
Matches: 83, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 83 1.00
ACGTcount: A:0.32, C:0.11, G:0.12, T:0.45
Consensus pattern (45 bp):
GTGTGCATTTCATAAAATATACATATTTTATTATTATTTCGTGCA
Found at i:102063 original size:3 final size:3
Alignment explanation
Indices: 102047--102118 Score: 69
Period size: 3 Copynumber: 23.3 Consensus size: 3
102037 CCGAATAAAA
102047 AAT AA- AAT -AT AAT AAT AAT AAT AAT AAT AAT AAAT AAAT AAGT AAAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT -AAT AA-T -AAT
*
102094 AA- AAA AAT AAT AAT AAT AAAT AAT A
1 AAT AAT AAT AAT AAT AAT -AAT AAT A
102119 TACTTGCAAA
Statistics
Matches: 61, Mismatches: 1, Indels: 14
0.80 0.01 0.18
Matches are distributed among these distances:
2 6 0.10
3 41 0.67
4 12 0.20
5 2 0.03
ACGTcount: A:0.71, C:0.00, G:0.01, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:102285 original size:40 final size:40
Alignment explanation
Indices: 102126--102307 Score: 172
Period size: 40 Copynumber: 4.8 Consensus size: 40
102116 ATATACTTGC
* *
102126 AAAAAC-ATATAATATATAGA--TTTT--AAAAATGCTTT
1 AAAAACTATATAATATATAAATGTTTTCAAAAAATGTTTT
* * * *
102161 AAAAATTATAT-AT-TATATATGTTTTC-AAAAATATTTA
1 AAAAACTATATAATATATAAATGTTTTCAAAAAATGTTTT
* ** *
102198 AAAAACTATAT-AT-TAT--ATCTTTTCAAAATGTTTTTTTT
1 AAAAACTATATAATATATAAATGTTTTCAAAA--AATGTTTT
102236 AAAAACTATATAATATATAAATGTTTTCAAAAAATGTTTT
1 AAAAACTATATAATATATAAATGTTTTCAAAAAATGTTTT
102276 AAAAACTATATAATATATAAATGTTTTCAAAA
1 AAAAACTATATAATATATAAATGTTTTCAAAA
102308 CTATATATTA
Statistics
Matches: 121, Mismatches: 15, Indels: 17
0.79 0.10 0.11
Matches are distributed among these distances:
34 5 0.04
35 14 0.12
36 11 0.09
37 23 0.19
38 15 0.12
39 2 0.02
40 40 0.33
42 11 0.09
ACGTcount: A:0.48, C:0.05, G:0.04, T:0.42
Consensus pattern (40 bp):
AAAAACTATATAATATATAAATGTTTTCAAAAAATGTTTT
Found at i:102307 original size:27 final size:27
Alignment explanation
Indices: 102267--102334 Score: 109
Period size: 27 Copynumber: 2.5 Consensus size: 27
102257 TGTTTTCAAA
*
102267 AAATGTTTTAAAAACTATATAATATAT
1 AAATGTTTTCAAAACTATATAATATAT
*
102294 AAATGTTTTCAAAACTATATATTATAT
1 AAATGTTTTCAAAACTATATAATATAT
*
102321 AAGTGTTTTCAAAA
1 AAATGTTTTCAAAA
102335 ATGTTTTAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.41
Consensus pattern (27 bp):
AAATGTTTTCAAAACTATATAATATAT
Found at i:102350 original size:37 final size:38
Alignment explanation
Indices: 102294--102378 Score: 136
Period size: 37 Copynumber: 2.2 Consensus size: 38
102284 TATAATATAT
* *
102294 AAATGTTTTCAAAACTATATATTATATAAGTGTTTTCAA
1 AAATGTTTT-AAAACTATATAATATATAAATGTTTTCAA
102333 AAATGTTTT-AAACTATATAATATATAAATGTTTTCAA
1 AAATGTTTTAAAACTATATAATATATAAATGTTTTCAA
102370 AAATGTTTT
1 AAATGTTTT
102379 TCAAAACCAT
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
37 35 0.80
39 9 0.20
ACGTcount: A:0.42, C:0.06, G:0.07, T:0.45
Consensus pattern (38 bp):
AAATGTTTTAAAACTATATAATATATAAATGTTTTCAA
Found at i:103107 original size:84 final size:84
Alignment explanation
Indices: 103001--103969 Score: 890
Period size: 84 Copynumber: 11.6 Consensus size: 84
102991 GTTCACCTCT
* * * * * * * *
103001 GAGCTGAGTGTAATCAAACTCGAAGGTCTTCGGTGGGCAGATAGCCTTTCTCGACTTAAGCTATG
1 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATG
*
103066 CTGCAAATAATGTGCCTTG
66 CTGCAAATGATGTGCCTTG
** * * *
103085 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTCGG-TGATAGATAACCCTTCTAGCCTTGAA-TTT
1 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTT-GGTTGGCAGATAACCCTTCTCGACTT-AAGTTA
* **
103148 TGTTATAAATGATGTGCCCTTG
64 TGCTGCAAATGATGTG-CCTTG
* * * * *
103170 AAGCTGAGTGTAATCGAACTC-AAGGGTC--T--TTGGCAGATAGCCCTTCTCGACTTAAGCTAT
1 GAGCTGAGCGTAGTCGAACTCGAA-GGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTAT
* * *
103230 ACTACAAATGATATGCCTTG
65 GCTGCAAATGATGTGCCTTG
* * * *
103250 GAGCTGAGCGTAGTTGAACTCGAAGGTCTTTGGTTGGTAGATAACCCTTCTCGACTTGAGTTATA
1 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATG
* * *
103315 CTGCAAATGATGTTCCCTC
66 CTGCAAATGATGTGCCTTG
* * * * * * *
103334 AACGCTGAGTGTAATCAAACTCG-AGATTCTTTGGGTGGCAGATAGCCCTTCTCGACTTAAGTTA
1 GA-GCTGAGCGTAGTCGAACTCGAAG-GTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTA
* *
103398 TTCTGCAAATGATGTGCCTTT
64 TGCTGCAAATGATGTGCCTTG
* * * * * * * * *
103419 GAGCTGAGAGTAGTCAAACTCGAAGATCCTTGGGTGGAAGATAACCCTTCTAGCCTTGAGTTATG
1 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATG
* *
103484 CTGCAAATGATGTGCCCTC
66 CTGCAAATGATGTGCCTTG
* * * * *
103503 GACGTTGAGTGTAATCGAACTC-AAGGGTATTTGGTTGGCAGATATCCCTTCTCGACTTAAGTTA
1 GA-GCTGAGCGTAGTCGAACTCGAA-GGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTA
* * *
103567 TACTGTAAATGATGTGTCGTT-
64 TGCTGCAAATGATGTG-CCTTG
* * * * *
103588 GAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGTTGGCAGATAACCCTTCTAGCCTTGAGTTATG
1 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATG
* *
103653 CTGCAAATGATGTGCCCTC
66 CTGCAAATGATGTGCCTTG
* * * * * *
103672 GACGATGAGTGTAATCTAACTCG-AGGCTCTTTGGTTGGAAGATAACCCTTCTCGACTTAAGCTA
1 GA-GCTGAGCGTAGTCGAACTCGAAGG-TCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTA
*
103736 T-CATGTAAATGATGTGCCTTG
64 TGC-TGCAAATGATGTGCCTTG
* * *
103757 GAGCTGAGCGTAGTCGAACTCAAAGGTCTTT-GTTGGAAGATAACCCTTCTCGACTTAAGTTATA
1 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATG
*
103821 CTGCAAATGATATGCCTTG
66 CTGCAAATGATGTGCCTTG
* * * * * * *
103840 GAGCTGAGCGTAGTCGAACTCGAAGGTC-TCGG-TGGCAGATAGCCCCTCTAGCCTTGAGCTATG
1 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATG
*
103903 CTACAAATGATGTGCCTTG
66 CTGCAAATGATGTGCCTTG
* * * * * *
103922 GAGCTGAGCGTAGTCAAACTCAAAGATC-TTGGCTGACAGACAACCCTT
1 GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTT
103970 GAGTTATGTT
Statistics
Matches: 716, Mismatches: 143, Indels: 53
0.79 0.16 0.06
Matches are distributed among these distances:
80 28 0.04
81 33 0.05
82 70 0.10
83 89 0.12
84 264 0.37
85 230 0.32
86 2 0.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (84 bp):
GAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATG
CTGCAAATGATGTGCCTTG
Found at i:103463 original size:169 final size:168
Alignment explanation
Indices: 103003--103946 Score: 1041
Period size: 169 Copynumber: 5.6 Consensus size: 168
102993 TCACCTCTGA
* * * *
103003 GCTGAGTGTAATCAAACTCGA-AGGTCTTCGGTGGGCAGATAGCCTTTCTCGACTTAAGCTATGC
1 GCTGAGTGTAATCGAACTCGAGA-GTCTTGGGT-GGCAGATAGCCCTTCTCGACTTAAGCTATAC
* * *
103067 TGCAAATAATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTCGG-T-GATAGATAAC
64 TGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCCTT-GGTTGGA-AGATAAC
* * * ** * *
103130 CCTTCTAGCCTTGAATTTTGTTATAAATGATGTGCCCTTGAA
127 CCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCCTCGAC
* * *
103172 GCTGAGTGTAATCGAACTCAAGGGTCTT---TGGCAGATAGCCCTTCTCGACTTAAGCTATACTA
1 GCTGAGTGTAATCGAACTCGAGAGTCTTGGGTGGCAGATAGCCCTTCTCGACTTAAGCTATACTG
* * * * *
103234 CAAATGATATGCCTTGGAGCTGAGCGTAGTTGAACTCGAAGGTCTTTGGTTGGTAGATAACCCTT
66 CAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCCTTGGTTGGAAGATAACCCTT
* * * * *
103299 CTCGACTTGAGTTATACTGCAAATGATGTTCCCTCAAC
131 CTAGCCTTGAGTTATGCTGCAAATGATGTGCCCTCGAC
* * * *
103337 GCTGAGTGTAATCAAACTCGAGATTCTTTGGGTGGCAGATAGCCCTTCTCGACTTAAGTTATTCT
1 GCTGAGTGTAATCGAACTCGAGAGTC-TTGGGTGGCAGATAGCCCTTCTCGACTTAAGCTATACT
* * * * * *
103402 GCAAATGATGTGCCTTTGAGCTGAGAGTAGTCAAACTCGAAGATCCTTGGGTGGAAGATAACCCT
65 GCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCCTTGGTTGGAAGATAACCCT
103467 TCTAGCCTTGAGTTATGCTGCAAATGATGTGCCCTCGAC
130 TCTAGCCTTGAGTTATGCTGCAAATGATGTGCCCTCGAC
* * * * * * *
103506 GTTGAGTGTAATCGAACTCAAGGGTATTTGGTTGGCAGATATCCCTTCTCGACTTAAGTTATACT
1 GCTGAGTGTAATCGAACTCGAGAGT-CTTGGGTGGCAGATAGCCCTTCTCGACTTAAGCTATACT
* * * * *
103571 GTAAATGATGTGTCGTT-GAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGTTGGCAGATAACCC
65 GCAAATGATGTG-CCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCCTTGGTTGGAAGATAACCC
103635 TTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCCTCGAC
129 TTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCCTCGAC
* * * * *
103675 GATGAGTGTAATCTAACTCGAG-GCTCTTTGGTTGGAAGATAACCCTTCTCGACTTAAGCTAT-C
1 GCTGAGTGTAATCGAACTCGAGAG-TC-TTGGGTGGCAGATAGCCCTTCTCGACTTAAGCTATAC
* *
103738 ATGTAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGT-CTTTGTTGGAAGATAACC
64 -TGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCCTTGGTTGGAAGATAACC
* * * * * * *
103802 CTTCTCGACTTAAGTTATACTGCAAATGATATGCCTTGGA-
128 CTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCCTCGAC
* * * * * * * *
103842 GCTGAGCGTAGTCGAACTCGA-AGGTC-TCGGTGGCAGATAGCCCCTCTAGCCTTGAGCTATGCT
1 GCTGAGTGTAATCGAACTCGAGA-GTCTTGGGTGGCAGATAGCCCTTCTCGACTTAAGCTATACT
* *
103905 ACAAATGATGTGCCTTGGAGCTGAGCGTAGTCAAACTCAAAG
65 GCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAG
103947 ATCTTGGCTG
Statistics
Matches: 665, Mismatches: 94, Indels: 36
0.84 0.12 0.05
Matches are distributed among these distances:
164 2 0.00
165 200 0.30
166 5 0.01
167 19 0.03
168 55 0.08
169 381 0.57
170 3 0.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (168 bp):
GCTGAGTGTAATCGAACTCGAGAGTCTTGGGTGGCAGATAGCCCTTCTCGACTTAAGCTATACTG
CAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCCTTGGTTGGAAGATAACCCTT
CTAGCCTTGAGTTATGCTGCAAATGATGTGCCCTCGAC
Found at i:103876 original size:503 final size:501
Alignment explanation
Indices: 103005--103953 Score: 1255
Period size: 503 Copynumber: 1.9 Consensus size: 501
102995 ACCTCTGAGC
* * *
103005 TGAGTGTAATCAAACTCGAAGGTCTTCGGTGGGCAGATAGCCTTTCTCGACTTAAGCTATGCTGC
1 TGAGTGTAATCAAACTCGAAGGTATTCGGTGGGCAGATAGCCCTTCTCGACTTAAGCTATACTGC
* *
103070 AAATAATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTCGGTGATAGATAACCCTTC
66 AAATAATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTCGGTGACAGATAACCCTTC
* * * * * *
103135 TAGCCTTGAATTTTGTTATAAATGATGTGCCCTTGAAGCTGAGTGTAATCGAACTCAAGGGTCTT
131 TAGCCTTGAATTATGCTACAAATGATGTGCCCTCGAAGATGAGTGTAATCGAACTCAAGGCTCTT
* * *
103200 TGGCAGATAGCCCTTCTCGACTTAAGCTATACTACAAATGATATGCCTTGGAGCTGAGCGTAGTT
196 TGGAAGATAACCCTTCTCGACTTAAGCTATACTACAAATGATATGCCTTGGAGCTGAGCGTAGTC
* * * * *
103265 GAACTCGAAGGTCTTTGGTTGGTAGATAACCCTTCTCGACTTGAGTTATACTGCAAATGATGTTC
261 GAACTCAAAGGTCTTTGGTTGGAAGATAACCCTTCTCGACTTAAGTTATACTGCAAATGATATGC
* * * * *
103330 CCTCAACGCTGAGTGTAATCAAACTCGAGATTCTTTGGGTGGCAGATAGCCCTTCTCGACTTAAG
326 CCTCAACGCTGAGCGTAATCAAACTCGAGAGTC-TTCGGTGGCAGATAGCCCCTCTAGACTTAAG
* * * * *
103395 TTATTCTGCAAATGATGTGCCTTTGAGCTGAGAGTAGTCAAACTCGAAGATCCTTGGGTGGAAGA
390 CTATGCTACAAATGATGTGCCTTGGAGCTGAGAGTAGTCAAACTCAAAGAT-CTTGGGTGGAAGA
103460 TAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCCTCGACGT
454 TAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCCTCGACGT
* * * * *
103508 TGAGTGTAATCGAACTC-AAGGGTATTTGGTTGGCAGATATCCCTTCTCGACTTAAGTTATACTG
1 TGAGTGTAATCAAACTCGAA-GGTATTCGGTGGGCAGATAGCCCTTCTCGACTTAAGCTATACTG
* * * * * *
103572 TAAATGATGTGTCGTT-GAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGTTGGCAGATAACCCT
65 CAAATAATGTG-CCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTCGGTGACAGATAACCCT
* * * * *
103636 TCTAGCCTTGAGTTATGCTGCAAATGATGTGCCCTCGACGATGAGTGTAATCTAACTCGAGGCTC
129 TCTAGCCTTGAATTATGCTACAAATGATGTGCCCTCGAAGATGAGTGTAATCGAACTCAAGGCTC
** *
103701 TTTGGTTGGAAGATAACCCTTCTCGACTTAAGCTAT-CATGTAAATGATGTGCCTTGGAGCTGAG
194 --T--TTGGAAGATAACCCTTCTCGACTTAAGCTATAC-TACAAATGATATGCCTTGGAGCTGAG
103765 CGTAGTCGAACTCAAAGGTCTTT-GTTGGAAGATAACCCTTCTCGACTTAAGTTATACTGCAAAT
254 CGTAGTCGAACTCAAAGGTCTTTGGTTGGAAGATAACCCTTCTCGACTTAAGTTATACTGCAAAT
* ** * *
103829 GATATGCCTTGGA-GCTGAGCGTAGTCGAACTCGA-AGGTC-TCGGTGGCAGATAGCCCCTCTAG
319 GATATGCCCTCAACGCTGAGCGTAATCAAACTCGAGA-GTCTTCGGTGGCAGATAGCCCCTCTAG
* * *
103891 CCTTGAGCTATGCTACAAATGATGTGCCTTGGAGCTGAGCGTAGTCAAACTCAAAGATCTTGG
383 ACTTAAGCTATGCTACAAATGATGTGCCTTGGAGCTGAGAGTAGTCAAACTCAAAGATCTTGG
103954 CTGACAGACA
Statistics
Matches: 382, Mismatches: 56, Indels: 17
0.84 0.12 0.04
Matches are distributed among these distances:
502 7 0.02
503 229 0.60
504 4 0.01
505 21 0.05
506 48 0.13
507 73 0.19
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (501 bp):
TGAGTGTAATCAAACTCGAAGGTATTCGGTGGGCAGATAGCCCTTCTCGACTTAAGCTATACTGC
AAATAATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTCGGTGACAGATAACCCTTC
TAGCCTTGAATTATGCTACAAATGATGTGCCCTCGAAGATGAGTGTAATCGAACTCAAGGCTCTT
TGGAAGATAACCCTTCTCGACTTAAGCTATACTACAAATGATATGCCTTGGAGCTGAGCGTAGTC
GAACTCAAAGGTCTTTGGTTGGAAGATAACCCTTCTCGACTTAAGTTATACTGCAAATGATATGC
CCTCAACGCTGAGCGTAATCAAACTCGAGAGTCTTCGGTGGCAGATAGCCCCTCTAGACTTAAGC
TATGCTACAAATGATGTGCCTTGGAGCTGAGAGTAGTCAAACTCAAAGATCTTGGGTGGAAGATA
ACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCCTCGACGT
Found at i:109196 original size:2 final size:2
Alignment explanation
Indices: 109189--109214 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
109179 GAGAAAAACA
109189 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
109215 TAATATAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:109282 original size:22 final size:22
Alignment explanation
Indices: 109247--109288 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
109237 TAGCAGGGAT
**
109247 AAACAAAAGTTAATAAAAAAAG
1 AAACAAAAAATAATAAAAAAAG
*
109269 AAACAAAAAATAATAGAAAA
1 AAACAAAAAATAATAAAAAA
109289 TAATAAAGTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.76, C:0.05, G:0.07, T:0.12
Consensus pattern (22 bp):
AAACAAAAAATAATAAAAAAAG
Found at i:109844 original size:12 final size:12
Alignment explanation
Indices: 109827--109852 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
109817 CGGCCGCCAA
109827 CCATCGCATCGG
1 CCATCGCATCGG
109839 CCATCGCATCGG
1 CCATCGCATCGG
109851 CC
1 CC
109853 GCCTGTGATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.46, G:0.23, T:0.15
Consensus pattern (12 bp):
CCATCGCATCGG
Found at i:110581 original size:7 final size:6
Alignment explanation
Indices: 110569--110643 Score: 64
Period size: 6 Copynumber: 11.8 Consensus size: 6
110559 ACACCGAATA
* *
110569 AAAAAT AAGAAAT AATAAT AAAAAT AATAATAAT AAAAAT AAATAA- ATAAAT
1 AAAAAT AA-AAAT AAAAAT AAAAAT -A-AA-AAT AAAAAT AAA-AAT AAAAAT
110621 AAATAAT AAAAAT -AAAAT AAAAA
1 AAA-AAT AAAAAT AAAAAT AAAAA
110644 ATAATATACT
Statistics
Matches: 57, Mismatches: 4, Indels: 16
0.74 0.05 0.21
Matches are distributed among these distances:
5 7 0.12
6 27 0.47
7 17 0.30
8 3 0.05
9 3 0.05
ACGTcount: A:0.77, C:0.00, G:0.01, T:0.21
Consensus pattern (6 bp):
AAAAAT
Found at i:110587 original size:3 final size:3
Alignment explanation
Indices: 110579--110649 Score: 58
Period size: 3 Copynumber: 23.3 Consensus size: 3
110569 AAAAATAAGA
* *
110579 AAT AAT AAT AAA AAT AAT AAT AAT AAA AAT AAAT AAAT AAAT AAAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT -AAT -AAT -AAT AAT
*
110628 AAA AAT AA- AAT AA- AA- AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
110650 TACTTTTAAA
Statistics
Matches: 59, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
2 6 0.10
3 38 0.64
4 15 0.25
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (3 bp):
AAT
Found at i:110595 original size:12 final size:13
Alignment explanation
Indices: 110572--110649 Score: 83
Period size: 12 Copynumber: 6.1 Consensus size: 13
110562 CCGAATAAAA
*
110572 AATAAGAAATAAT
1 AATAATAAATAAT
110585 AATAA-AAATAAT
1 AATAATAAATAAT
110597 AATAATAAA-AAT
1 AATAATAAATAAT
110609 AAATAAATAAATAAAT
1 -AAT-AATAAAT-AAT
110625 AATAA-AAATAA-
1 AATAATAAATAAT
*
110636 AATAAAAAATAAT
1 AATAATAAATAAT
110649 A
1 A
110650 TACTTTTAAA
Statistics
Matches: 58, Mismatches: 0, Indels: 14
0.81 0.00 0.19
Matches are distributed among these distances:
11 5 0.09
12 23 0.40
13 16 0.28
14 8 0.14
15 3 0.05
16 3 0.05
ACGTcount: A:0.76, C:0.00, G:0.01, T:0.23
Consensus pattern (13 bp):
AATAATAAATAAT
Found at i:110601 original size:25 final size:25
Alignment explanation
Indices: 110572--110649 Score: 90
Period size: 25 Copynumber: 3.0 Consensus size: 25
110562 CCGAATAAAA
110572 AATAAGAAATAATAAT-AAAAATAAT
1 AATAA-AAATAATAATAAAAAATAAT
110597 AATAATAAA-AATAAATAAATAAATAAAT
1 AATAA-AAATAAT-AATAAA-AAAT-AAT
110625 AATAAAAATAA-AATAAAAAATAAT
1 AATAAAAATAATAATAAAAAATAAT
110649 A
1 A
110650 TACTTTTAAA
Statistics
Matches: 47, Mismatches: 1, Indels: 11
0.80 0.02 0.19
Matches are distributed among these distances:
24 7 0.15
25 15 0.32
26 8 0.17
27 7 0.15
28 10 0.21
ACGTcount: A:0.76, C:0.00, G:0.01, T:0.23
Consensus pattern (25 bp):
AATAAAAATAATAATAAAAAATAAT
Found at i:110603 original size:21 final size:21
Alignment explanation
Indices: 110579--110649 Score: 69
Period size: 21 Copynumber: 3.5 Consensus size: 21
110569 AAAAATAAGA
110579 AATAATAATAAAAATAATAAT
1 AATAATAATAAAAATAATAAT
* *
110600 AATAAAAATAAATA-AAT-A-
1 AATAATAATAAAAATAATAAT
110618 AATAAATAATAAAAATAA-AAT
1 AAT-AATAATAAAAATAATAAT
*
110639 AAAAAATAATA
1 -AATAATAATA
110650 TACTTTTAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
18 3 0.08
19 10 0.25
20 6 0.15
21 19 0.47
22 2 0.05
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (21 bp):
AATAATAATAAAAATAATAAT
Found at i:110614 original size:4 final size:4
Alignment explanation
Indices: 110605--110647 Score: 52
Period size: 4 Copynumber: 10.5 Consensus size: 4
110595 ATAATAATAA
*
110605 AAAT AAAT AAAT AAAT AAAT AATAA AAAT AAAAT AAA- AAAT AA
1 AAAT AAAT AAAT AAAT AAAT AA-AT AAAT -AAAT AAAT AAAT AA
110648 TATACTTTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
3 3 0.09
4 24 0.71
5 7 0.21
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (4 bp):
AAAT
Found at i:110803 original size:27 final size:27
Alignment explanation
Indices: 110768--110930 Score: 115
Period size: 27 Copynumber: 6.1 Consensus size: 27
110758 AATTTTAAAA
110768 AAAACTATATAATATATAAATGTTTTC
1 AAAACTATATAATATATAAATGTTTTC
*
110795 AAAACTATATAATATATATATGTTTTC
1 AAAACTATATAATATATAAATGTTTTC
* * * * * *
110822 AAAA-TGTTTTAA-AAACTATATATTAT-
1 AAAACT-ATATAATATA-TAAATGTTTTC
* * * *
110848 ATAAA-TGT-T-TTGA-AAAAATGTTTTA
1 A-AAACTATATAAT-ATATAAATGTTTTC
110873 AAAACTATATAATATATAAATGTTTTC
1 AAAACTATATAATATATAAATGTTTTC
* * *
110900 AAAACTATATATTATATAAGTGTTTTG
1 AAAACTATATAATATATAAATGTTTTC
110927 AAAA
1 AAAA
110931 ATGTTTTAAA
Statistics
Matches: 107, Mismatches: 19, Indels: 20
0.73 0.13 0.14
Matches are distributed among these distances:
24 9 0.08
25 5 0.05
26 8 0.07
27 85 0.79
ACGTcount: A:0.47, C:0.05, G:0.06, T:0.42
Consensus pattern (27 bp):
AAAACTATATAATATATAAATGTTTTC
Found at i:110813 original size:65 final size:64
Alignment explanation
Indices: 110730--110863 Score: 166
Period size: 65 Copynumber: 2.1 Consensus size: 64
110720 AAATATTTAA
110730 AAAACTATAT-AT-TATATA-TTTTCAAAAAAATTTTAAAAAAAACTATATAATATATAAATGTT
1 AAAACTATATAATATATATAGTTTTC-AAAAAATTTT---AAAAACTATATAATATATAAATGTT
110792 TTC
62 TTC
** * *
110795 AAAACTATATAATATATATATGTTTTCAAAATGTTTTAAAAACTATATATTATATAAATGTTTTG
1 AAAACTATATAATATATATA-GTTTTCAAAAAATTTTAAAAACTATATAATATATAAATGTTTTC
110860 AAAA
1 AAAA
110864 AATGTTTTAA
Statistics
Matches: 61, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
65 40 0.66
66 2 0.03
67 6 0.10
68 8 0.13
69 5 0.08
ACGTcount: A:0.50, C:0.05, G:0.04, T:0.41
Consensus pattern (64 bp):
AAAACTATATAATATATATAGTTTTCAAAAAATTTTAAAAACTATATAATATATAAATGTTTTC
Found at i:110866 original size:40 final size:39
Alignment explanation
Indices: 110785--110903 Score: 177
Period size: 40 Copynumber: 3.1 Consensus size: 39
110775 TATAATATAT
* * *
110785 AAATGTTTTCAAAACTATATAATATATATATGTTTT-CA
1 AAATGTTTTAAAAACTATATAATATATAAATGTTTTAAA
*
110823 AAATGTTTTAAAAACTATATATTATATAAATGTTTTGAAA
1 AAATGTTTTAAAAACTATATAATATATAAATGTTTT-AAA
*
110863 AAATGTTTTAAAAACTATATAATATATAAATGTTTTCAA
1 AAATGTTTTAAAAACTATATAATATATAAATGTTTTAAA
110902 AA
1 AA
110904 CTATATATTA
Statistics
Matches: 73, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
38 33 0.45
39 4 0.05
40 36 0.49
ACGTcount: A:0.47, C:0.05, G:0.06, T:0.42
Consensus pattern (39 bp):
AAATGTTTTAAAAACTATATAATATATAAATGTTTTAAA
Found at i:110886 original size:105 final size:104
Alignment explanation
Indices: 110683--110994 Score: 363
Period size: 104 Copynumber: 3.0 Consensus size: 104
110673 TGGATTTCAA
* * * *
110683 AAATGTTTTAAAAATTATAT-AT-TATATATGTTTTCAAAAATATTTAAAAAACTATATATTATA
1 AAATGTTTTCAAAACTATATAATATATATATGTTTTC-AAAATGTTTTAAAAACTATATATTATA
* *
110746 T--AT-TTTCAAAAAAAT-TTTAAAAAAAACTATATAATATAT
65 TAAATGTTT-TAAAAAATGTTT--TAAAAACTATATAATATAT
110785 AAATGTTTTCAAAACTATATAATATATATATGTTTTCAAAATGTTTTAAAAACTATATATTATAT
1 AAATGTTTTCAAAACTATATAATATATATATGTTTTCAAAATGTTTTAAAAACTATATATTATAT
110850 AAATGTTTTGAAAAAATGTTTTAAAAACTATATAATATAT
66 AAATGTTTT-AAAAAATGTTTTAAAAACTATATAATATAT
* * * *
110890 AAATGTTTTCAAAACTATATATTATATA-AGTGTTTTGAAAAATGTTTT--AAACTATAAAATAT
1 AAATGTTTTCAAAACTATATAATATATATA-TGTTTT-CAAAATGTTTTAAAAACTATATATTAT
* * * *
110952 ATAAATGTTTTCAAAAATGTTTTTCAAAACCATATTATATAT
64 ATAAATGTTTTAAAAAATG-TTTTAAAAACTATATAATATAT
110994 A
1 A
110995 TATATATATT
Statistics
Matches: 186, Mismatches: 14, Indels: 18
0.85 0.06 0.08
Matches are distributed among these distances:
102 18 0.10
103 35 0.19
104 57 0.31
105 53 0.28
106 20 0.11
107 3 0.02
ACGTcount: A:0.48, C:0.05, G:0.05, T:0.42
Consensus pattern (104 bp):
AAATGTTTTCAAAACTATATAATATATATATGTTTTCAAAATGTTTTAAAAACTATATATTATAT
AAATGTTTTAAAAAATGTTTTAAAAACTATATAATATAT
Found at i:110894 original size:67 final size:64
Alignment explanation
Indices: 110823--110968 Score: 229
Period size: 67 Copynumber: 2.2 Consensus size: 64
110813 TATGTTTTCA
*
110823 AAATGTTTTAAAAACTATATATTATATAAATGTTTTGAAAAAATGTTTTAAAAACTATATAATAT
1 AAATGTTTTAAAAACTATATATTATATAAATGTTTTG-AAAAATGTTTT--AAACTATAAAATAT
110888 AT
63 AT
* *
110890 AAATGTTTTCAAAACTATATATTATATAAGTGTTTTGAAAAATGTTTTAAACTATAAAATATAT
1 AAATGTTTTAAAAACTATATATTATATAAATGTTTTGAAAAATGTTTTAAACTATAAAATATAT
110954 AAATGTTTTCAAAAA
1 AAATGTTTT-AAAAA
110969 TGTTTTTCAA
Statistics
Matches: 74, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
64 24 0.32
65 4 0.05
66 11 0.15
67 35 0.47
ACGTcount: A:0.48, C:0.04, G:0.07, T:0.41
Consensus pattern (64 bp):
AAATGTTTTAAAAACTATATATTATATAAATGTTTTGAAAAATGTTTTAAACTATAAAATATAT
Found at i:110993 original size:40 final size:38
Alignment explanation
Indices: 110890--111035 Score: 161
Period size: 37 Copynumber: 3.7 Consensus size: 38
110880 TATAATATAT
* *
110890 AAATGTTTTCAAAACTATATATTATATAAGTGTTTTGAA
1 AAATGTTTTCAAAACTATATAATATATAAATGTTTT-AA
*
110929 AAATGTTTT--AAACTATAAAATATATAAATGTTTTCAA
1 AAATGTTTTCAAAACTATATAATATATAAATGTTTT-AA
* * * *
110966 AAATGTTTTTCAAAACCATATTATATATATATATATATTAA
1 AAATG-TTTTCAAAACTATA-TA-ATATATAAATGTTTTAA
111007 AAATGTTTTCAAAAACTATATAATATATA
1 AAATGTTTTC-AAAACTATATAATATATA
111036 CTTATTTTCG
Statistics
Matches: 91, Mismatches: 10, Indels: 12
0.81 0.09 0.11
Matches are distributed among these distances:
37 29 0.32
38 4 0.04
39 16 0.18
40 14 0.15
41 16 0.18
42 12 0.13
ACGTcount: A:0.47, C:0.06, G:0.05, T:0.42
Consensus pattern (38 bp):
AAATGTTTTCAAAACTATATAATATATAAATGTTTTAA
Found at i:111107 original size:4 final size:4
Alignment explanation
Indices: 111098--111130 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
111088 CATTTTCAAA
111098 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT A
111131 TATATATATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:114280 original size:2 final size:2
Alignment explanation
Indices: 114268--114338 Score: 133
Period size: 2 Copynumber: 35.5 Consensus size: 2
114258 TATAGCTATG
*
114268 TA TA GA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
114310 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
114339 TTTATAAAAT
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
2 67 1.00
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (2 bp):
TA
Found at i:115960 original size:16 final size:16
Alignment explanation
Indices: 115934--115971 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
115924 TCTACTAAAG
*
115934 CATGATTGGGTATATAT
1 CATG-TTGGGTAGATAT
115951 CATGTTGGGTAGATAT
1 CATGTTGGGTAGATAT
115967 CATGT
1 CATGT
115972 GAATAAGGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 16 0.80
17 4 0.20
ACGTcount: A:0.26, C:0.08, G:0.26, T:0.39
Consensus pattern (16 bp):
CATGTTGGGTAGATAT
Found at i:122438 original size:2 final size:2
Alignment explanation
Indices: 122420--122453 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
122410 AGATTCTCCC
* *
122420 AT AT GT AT AT AT GT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
122454 CTTCTTTTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (2 bp):
AT
Found at i:125978 original size:8 final size:8
Alignment explanation
Indices: 125965--126023 Score: 73
Period size: 8 Copynumber: 6.9 Consensus size: 8
125955 GAAATGAGTG
125965 AAAATGAA
1 AAAATGAA
125973 AAAATGAA
1 AAAATGAA
*
125981 AAAATAAAA
1 AAAAT-GAA
125990 AAAATGAAA
1 AAAATG-AA
125999 AATGAATGAA
1 AA--AATGAA
126009 AAAATGAA
1 AAAATGAA
126017 AAAATGA
1 AAAATGA
126024 GGGTTCAAGA
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
8 26 0.58
9 11 0.24
10 4 0.09
11 4 0.09
ACGTcount: A:0.75, C:0.00, G:0.12, T:0.14
Consensus pattern (8 bp):
AAAATGAA
Found at i:127374 original size:55 final size:55
Alignment explanation
Indices: 127029--127366 Score: 543
Period size: 55 Copynumber: 6.1 Consensus size: 55
127019 CAGCGATCGT
* * * *
127029 TGAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAGACGCGACTGT
1 TGAAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGA
* *
127084 TGAAGATTGTTCGAGTCTTATACTCTCTGCAGAAATAGGGAGCAGACACGATTGA
1 TGAAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGA
* * *
127139 TGAAGATTTTTCGGGTCTTATACTCTCTGAAGGAATGGGGAGCAGACACGATTGA
1 TGAAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGA
*
127194 TGAAGATTGTTCGAGTCTTATACTCTCTGAAGGAATGGGGAGCAGACACGATTGA
1 TGAAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGA
*
127249 TGAAGATTGTTCGGGTCTTATACTCTCTG-AGGAAATAGGGAGCAGACACGATTGA
1 TGAAGATTGTTCGAGTCTTATACTCTCTGAAGG-AATAGGGAGCAGACACGATTGA
* *
127304 TGAAGATTGTTCAAGTCTTATACTCTCTGAAGGAATGGGGAGCAGACACGATTGA
1 TGAAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGA
127359 TGAAGATT
1 TGAAGATT
127367 CTTCAAGTTC
Statistics
Matches: 265, Mismatches: 16, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
54 3 0.01
55 259 0.98
56 3 0.01
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.28
Consensus pattern (55 bp):
TGAAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGA
Found at i:129521 original size:2 final size:2
Alignment explanation
Indices: 129514--129542 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
129504 ATGTATAGAG
129514 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
129543 TTTATAAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:130982 original size:15 final size:15
Alignment explanation
Indices: 130954--130993 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 15
130944 TAAAATTATT
*
130954 TAAAA-ATAATAATA
1 TAAAATATAAAAATA
130968 TAAAATATAAAAATA
1 TAAAATATAAAAATA
130983 T--AATATAAAAA
1 TAAAATATAAAAA
130994 CATTTTATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
13 10 0.42
14 5 0.21
15 9 0.38
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (15 bp):
TAAAATATAAAAATA
Found at i:130985 original size:20 final size:21
Alignment explanation
Indices: 130954--130992 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
130944 TAAAATTATT
130954 TAAAAATAATAATATAAAATA
1 TAAAAATAATAATATAAAATA
130975 TAAAAAT-ATAATATAAAA
1 TAAAAATAATAATATAAAA
130993 ACATTTTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (21 bp):
TAAAAATAATAATATAAAATA
Found at i:132193 original size:21 final size:21
Alignment explanation
Indices: 132167--132206 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
132157 TAAAGAGTTC
*
132167 AATAATAATATTTTCGGTAGA
1 AATAATAATATTTCCGGTAGA
*
132188 AATAATAATGTTTCCGGTA
1 AATAATAATATTTCCGGTA
132207 ATTTTTTTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.40, C:0.07, G:0.15, T:0.38
Consensus pattern (21 bp):
AATAATAATATTTCCGGTAGA
Found at i:135103 original size:15 final size:15
Alignment explanation
Indices: 135083--135124 Score: 52
Period size: 13 Copynumber: 2.9 Consensus size: 15
135073 TAAATATTAT
135083 CAATTAAGCTACTAG
1 CAATTAAGCTACTAG
* *
135098 CAATTAA--TATTAT
1 CAATTAAGCTACTAG
135111 CAATTAAGCTACTA
1 CAATTAAGCTACTA
135125 TCAAAAATTA
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
13 11 0.50
15 11 0.50
ACGTcount: A:0.43, C:0.17, G:0.07, T:0.33
Consensus pattern (15 bp):
CAATTAAGCTACTAG
Found at i:135116 original size:13 final size:13
Alignment explanation
Indices: 135075--135117 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
135065 TAAATATTTA
135075 AATATTATCAATT
1 AATATTATCAATT
* *
135088 AAGCTACTAGCAATT
1 AA--TATTATCAATT
135103 AATATTATCAATT
1 AATATTATCAATT
135116 AA
1 AA
135118 GCTACTATCA
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
13 13 0.54
15 11 0.46
ACGTcount: A:0.47, C:0.12, G:0.05, T:0.37
Consensus pattern (13 bp):
AATATTATCAATT
Found at i:135128 original size:15 final size:15
Alignment explanation
Indices: 135080--135128 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
135070 ATTTAAATAT
135080 TATCAATTAAGCTAC
1 TATCAATTAAGCTAC
* *
135095 TAGCAATTAA--TAT
1 TATCAATTAAGCTAC
135108 TATCAATTAAGCTAC
1 TATCAATTAAGCTAC
135123 TATCAA
1 TATCAA
135129 AAATTAGGAT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
13 11 0.39
15 17 0.61
ACGTcount: A:0.43, C:0.16, G:0.06, T:0.35
Consensus pattern (15 bp):
TATCAATTAAGCTAC
Found at i:135140 original size:28 final size:28
Alignment explanation
Indices: 135081--135146 Score: 71
Period size: 28 Copynumber: 2.3 Consensus size: 28
135071 TTTAAATATT
* **
135081 ATCAATTAAGCTACTAGCAATTAATATT
1 ATCAATTAAGCTACTAGCAATAAATAGG
*
135109 ATCAATTAAGCTACTATCAA-AAATTAGG
1 ATCAATTAAGCTACTAGCAATAAA-TAGG
135137 ATCAAGTTAA
1 ATCAA-TTAA
135147 TAAATATATA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
27 2 0.06
28 26 0.81
29 4 0.12
ACGTcount: A:0.45, C:0.14, G:0.09, T:0.32
Consensus pattern (28 bp):
ATCAATTAAGCTACTAGCAATAAATAGG
Found at i:136515 original size:22 final size:22
Alignment explanation
Indices: 136490--136556 Score: 84
Period size: 22 Copynumber: 3.0 Consensus size: 22
136480 CTTGGAAAAT
*
136490 AATTTAATT-TTTAAAATTTTAA
1 AATTGAATTATTT-AAATTTTAA
136512 AATTGAATTATTT-AATTTCTAA
1 AATTGAATTATTTAAATTT-TAA
*
136534 AATTGAATTATTTAATTTTTAA
1 AATTGAATTATTTAAATTTTAA
136556 A
1 A
136557 GTTCCTCTTC
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
21 5 0.12
22 28 0.70
23 7 0.17
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.52
Consensus pattern (22 bp):
AATTGAATTATTTAAATTTTAA
Found at i:144429 original size:42 final size:42
Alignment explanation
Indices: 144317--144429 Score: 106
Period size: 41 Copynumber: 2.7 Consensus size: 42
144307 TGCTCGAGTT
* * *
144317 CTTATGGATGGCCC-AAAAGACTT-ATCGTCATGCTCAAAAGA
1 CTTATAGATGGCCCGAAGA-ACTTAATCATCATGCTCAAAAGA
* * * * * *
144358 CTTATAGAT-GACCGAAGGATTTAAGCATCATTCTCATAAGA
1 CTTATAGATGGCCCGAAGAACTTAATCATCATGCTCAAAAGA
*
144399 CTTATTGATGGCCCGAAGAACTTAATCATCA
1 CTTATAGATGGCCCGAAGAACTTAATCATCA
144430 AGAAAATCTT
Statistics
Matches: 55, Mismatches: 14, Indels: 5
0.74 0.19 0.07
Matches are distributed among these distances:
40 6 0.11
41 32 0.58
42 17 0.31
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.27
Consensus pattern (42 bp):
CTTATAGATGGCCCGAAGAACTTAATCATCATGCTCAAAAGA
Found at i:145231 original size:10 final size:10
Alignment explanation
Indices: 145210--145246 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
145200 AAGGTTTTCG
*
145210 ATCTAAATAT
1 ATCTATATAT
*
145220 ATATATATAT
1 ATCTATATAT
145230 ATCTATATAT
1 ATCTATATAT
145240 ATCTATA
1 ATCTATA
145247 AAGGGAGAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (10 bp):
ATCTATATAT
Found at i:146831 original size:7 final size:7
Alignment explanation
Indices: 146821--146855 Score: 61
Period size: 7 Copynumber: 5.0 Consensus size: 7
146811 ATTCATCATT
146821 CATAAAA
1 CATAAAA
146828 CATAAAA
1 CATAAAA
146835 CATAAAA
1 CATAAAA
146842 CATAAAA
1 CATAAAA
*
146849 CGTAAAA
1 CATAAAA
146856 ATATTGTTCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.69, C:0.14, G:0.03, T:0.14
Consensus pattern (7 bp):
CATAAAA
Found at i:147315 original size:25 final size:25
Alignment explanation
Indices: 147287--147338 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
147277 CCTTTACAAT
147287 TTACGTTGTCACAACTAAAATGTTC
1 TTACGTTGTCACAACTAAAATGTTC
147312 TTACGTTGTCACAACTAAAATGTTC
1 TTACGTTGTCACAACTAAAATGTTC
147337 TT
1 TT
147339 CTCTGTAAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.31, C:0.19, G:0.12, T:0.38
Consensus pattern (25 bp):
TTACGTTGTCACAACTAAAATGTTC
Found at i:147909 original size:27 final size:22
Alignment explanation
Indices: 147852--147896 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
147842 AATGCTTTAA
147852 TTACCATTTAATTTCAATATAT
1 TTACCATTTAATTTCAATATAT
147874 TTACCATTTAATTTC-ATATAT
1 TTACCATTTAATTTCAATATAT
147895 TT
1 TT
147897 TATTTAGGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 8 0.35
22 15 0.65
ACGTcount: A:0.33, C:0.13, G:0.00, T:0.53
Consensus pattern (22 bp):
TTACCATTTAATTTCAATATAT
Found at i:151648 original size:26 final size:25
Alignment explanation
Indices: 151618--151724 Score: 106
Period size: 27 Copynumber: 4.0 Consensus size: 25
151608 CAACACAAAG
* *
151618 AGAAAAAAAGATATAACATAAAAAAA
1 AGAAAAAAAGA-AAAACATAAAAGAA
151644 AGAAAAAAAGGAAAAACATAAAAGAA
1 AGAAAAAAA-GAAAAACATAAAAGAA
* *
151670 AGAGAGAAAGGAAAAAACATAAAAGAA
1 AGA-AAAAAAG-AAAAACATAAAAGAA
* *
151697 AGAGAGAAAGGAAAAAACATAAAAGAA
1 AGA-AAAAAAG-AAAAACATAAAAGAA
151724 A
1 A
151725 TTAGAGAAAA
Statistics
Matches: 74, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
26 25 0.34
27 49 0.66
ACGTcount: A:0.74, C:0.04, G:0.17, T:0.06
Consensus pattern (25 bp):
AGAAAAAAAGAAAAACATAAAAGAA
Found at i:151673 original size:54 final size:54
Alignment explanation
Indices: 151614--151753 Score: 146
Period size: 54 Copynumber: 2.6 Consensus size: 54
151604 TTGACAACAC
151614 AAAGAGAAAAAAAGATATAACATAAAAAAAAGAAAAAAAGG-AAAAACATAAAAG
1 AAAGAGAAAAAAAGATA-AACATAAAAAAAAGAAAAAAAGGAAAAAACATAAAAG
* * * *
151668 AAAGAGAGAAAGGAA-A-AAACATAAAAGAAAGAGAGAAAGGAAAAAACATAAAAG
1 AAAGAGA-AAA-AAAGATAAACATAAAAAAAAGAAAAAAAGGAAAAAACATAAAAG
* *
151722 AAATTAGAGAAAAAA-ATAAAGA-AAAAAAAAGA
1 AAA-GAGA-AAAAAAGATAAACATAAAAAAAAGA
151754 GTCAAAAAAG
Statistics
Matches: 73, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
53 20 0.27
54 36 0.49
55 15 0.21
56 2 0.03
ACGTcount: A:0.74, C:0.03, G:0.16, T:0.06
Consensus pattern (54 bp):
AAAGAGAAAAAAAGATAAACATAAAAAAAAGAAAAAAAGGAAAAAACATAAAAG
Found at i:151693 original size:27 final size:27
Alignment explanation
Indices: 151632--151733 Score: 152
Period size: 27 Copynumber: 3.8 Consensus size: 27
151622 AAAAAGATAT
* * *
151632 AACATAAAAAAAAGAAAAAAAGG-AAA
1 AACATAAAAGAAAGAGAGAAAGGAAAA
151658 AACATAAAAGAAAGAGAGAAAGGAAAA
1 AACATAAAAGAAAGAGAGAAAGGAAAA
151685 AACATAAAAGAAAGAGAGAAAGGAAAA
1 AACATAAAAGAAAGAGAGAAAGGAAAA
*
151712 AACATAAAAGAAATTAGAGAAA
1 AACATAAAAGAAA-GAGAGAAA
151734 AAAATAAAGA
Statistics
Matches: 70, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
26 20 0.29
27 43 0.61
28 7 0.10
ACGTcount: A:0.73, C:0.04, G:0.18, T:0.06
Consensus pattern (27 bp):
AACATAAAAGAAAGAGAGAAAGGAAAA
Found at i:151754 original size:54 final size:53
Alignment explanation
Indices: 151632--151754 Score: 151
Period size: 54 Copynumber: 2.3 Consensus size: 53
151622 AAAAAGATAT
* *
151632 AACATAAAAAAAAGAAAAAAAGGAAAAACATAAAAGAAAGAGAGAAAGGAAAA
1 AACATAAAAAAAAGAGAAAAAGGAAAAACATAAAAGAAAGAGAGAAAGAAAAA
* * *
151685 AACATAAAAGAAAGAGAGAAAGGAAAAAACATAAAAGAAATTAGAGAAA-AAAATA
1 AACATAAAAAAAAGAGAAAAAGG-AAAAACATAAAAGAAA-GAGAGAAAGAAAA-A
*
151740 AAGA-AAAAAAAAGAG
1 AACATAAAAAAAAGAG
151755 TCAAAAAAGA
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
53 20 0.33
54 29 0.48
55 11 0.18
ACGTcount: A:0.74, C:0.03, G:0.17, T:0.06
Consensus pattern (53 bp):
AACATAAAAAAAAGAGAAAAAGGAAAAACATAAAAGAAAGAGAGAAAGAAAAA
Found at i:151771 original size:11 final size:9
Alignment explanation
Indices: 151759--151798 Score: 80
Period size: 9 Copynumber: 4.4 Consensus size: 9
151749 AAAGAGTCAA
151759 AAAAGAGAG
1 AAAAGAGAG
151768 AAAAGAGAG
1 AAAAGAGAG
151777 AAAAGAGAG
1 AAAAGAGAG
151786 AAAAGAGAG
1 AAAAGAGAG
151795 AAAA
1 AAAA
151799 AGGAAAAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 31 1.00
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (9 bp):
AAAAGAGAG
Found at i:153981 original size:55 final size:54
Alignment explanation
Indices: 153845--154673 Score: 989
Period size: 55 Copynumber: 15.1 Consensus size: 54
153835 TGTTACTCGG
* * ** * ** *
153845 TTAACATGAGTTTTTAAAGAAAATAAAACTGGTTTTCAGAAAATTCCTGATGATT
1 TTAA-ATGAGCTTTTAAAGAAACTAAGTCTGATTTTCAGAAGTTTCTTGATGATT
* * * * *
153900 TCAAATGAGTTTTTAAAGAAATTAAGTCTGATTTTCATAAGTTTCTTGATTATT
1 TTAAATGAGCTTTTAAAGAAACTAAGTCTGATTTTCAGAAGTTTCTTGATGATT
* * * * *
153954 GTTAAATGAGCTTTCAAATAAACTAAGTCTTATTTTCAAAAGTTTCCTGATGATT
1 -TTAAATGAGCTTTTAAAGAAACTAAGTCTGATTTTCAGAAGTTTCTTGATGATT
* * * * *
154009 TTAAATGAGCTTTCAAAGAAACTAAGTATGATTTTCATAAGTTTCTTGACGTTTT
1 TTAAATGAGCTTTTAAAGAAACTAAGTCTGATTTTCAGAAGTTTCTTGATG-ATT
* *
154064 TTAAATGAGCTTTCAAAGAAACTAAGTCTGATTTTCATAAGTTTCTTGATGATT
1 TTAAATGAGCTTTTAAAGAAACTAAGTCTGATTTTCAGAAGTTTCTTGATGATT
* * * *
154118 TTAAATGAGCTTTCAAAGAAATTAAGTCTGATTTTTAGAAGTTTCTTGACGATTT
1 TTAAATGAGCTTTTAAAGAAACTAAGTCTGATTTTCAGAAGTTTCTTGATGA-TT
* * *
154173 TTAAATGAGCTTTCAAAGAAACTAAGTATGATTTTTAGAAGTTTCTTGATGATT
1 TTAAATGAGCTTTTAAAGAAACTAAGTCTGATTTTCAGAAGTTTCTTGATGATT
* * * *
154227 TTCAAATGAGTTTTTAAAGAAACTAAGTCCGATTTT-TGAAAGTTTCTTGATCATTT
1 TT-AAATGAGCTTTTAAAGAAACTAAGTCTGATTTTCAG-AAGTTTCTTGATGA-TT
*
154283 TTAAATGAGCTTTTAAAGAAA-TAAAGTCTAATTTTCAGAAGTTTCTTGATGATT
1 TTAAATGAGCTTTTAAAGAAACT-AAGTCTGATTTTCAGAAGTTTCTTGATGATT
*
154337 TTCAAATGAGCTTTTAAAGAAACTAAGTCTGATTTTCAGAAGTTTCTTGATCATTT
1 TT-AAATGAGCTTTTAAAGAAACTAAGTCTGATTTTCAGAAGTTTCTTGATGA-TT
* * * *
154393 TTAAAAGAGCTTTTAAAGAAAGTAAGTCTGATGTTCAGAAGTTTCTTGACGATT
1 TTAAATGAGCTTTTAAAGAAACTAAGTCTGATTTTCAGAAGTTTCTTGATGATT
* * * *
154447 TTCAAATGAGTTTTTAAAGAAACCAAGTCCGATTTTCAGAAGTTTCTTGATCATTT
1 TT-AAATGAGCTTTTAAAGAAACTAAGTCTGATTTTCAGAAGTTTCTTGATGA-TT
* * *
154503 TTAAATAAGCTTTTAAAGAAACTAAGTTTGATTTTCAGAAGTTTCTTGACGATT
1 TTAAATGAGCTTTTAAAGAAACTAAGTCTGATTTTCAGAAGTTTCTTGATGATT
* * *
154557 TTCAAATGAGTTTTTAAAGAAATTAAGTCTGATTTTCAGAAGTTTCTTGATCATTT
1 TT-AAATGAGCTTTTAAAGAAACTAAGTCTGATTTTCAGAAGTTTCTTGATGA-TT
* * * **
154613 TTAAATGAGCTTTCAAAGAAATTAAGTCTTATTTTCAGGGGTTTCTTGATG-TT
1 TTAAATGAGCTTTTAAAGAAACTAAGTCTGATTTTCAGAAGTTTCTTGATGATT
154666 TTCAAATG
1 TT-AAATG
154674 CTTTTTCAAA
Statistics
Matches: 677, Mismatches: 81, Indels: 33
0.86 0.10 0.04
Matches are distributed among these distances:
53 4 0.01
54 159 0.23
55 496 0.73
56 18 0.03
ACGTcount: A:0.34, C:0.10, G:0.15, T:0.41
Consensus pattern (54 bp):
TTAAATGAGCTTTTAAAGAAACTAAGTCTGATTTTCAGAAGTTTCTTGATGATT
Found at i:154283 original size:110 final size:110
Alignment explanation
Indices: 153845--154691 Score: 1109
Period size: 110 Copynumber: 7.7 Consensus size: 110
153835 TGTTACTCGG
* * * ** * ** *
153845 TTAACATGAGTTTTTAAAGAAAATAAAACTGGTTTTCAGAAAATTCCTGATGA-TTTCAAATGAG
1 TTAA-ATGAGCTTTCAAAGAAACTAAGTCTGATTTTCAGAAGTTTCTTGATGATTTTCAAATGAG
* * * *
153909 TTTTTAAAGAAATTAAGTCTGATTTTCATAAGTTTCTTGATTATTG
65 TTTTTAAAGAAACTAAGTCTGATTTTCAGAAGTTTCTTGATCATTT
* * * * *
153955 TTAAATGAGCTTTCAAATAAACTAAGTCTTATTTTCAAAAGTTTCCTGATGATTTT-AAATGAGC
1 TTAAATGAGCTTTCAAAGAAACTAAGTCTGATTTTCAGAAGTTTCTTGATGATTTTCAAATGAGT
* * * *
154019 TTTCAAAGAAACTAAGTATGATTTTCATAAGTTTCTTGA-CGTTTT
66 TTTTAAAGAAACTAAGTCTGATTTTCAGAAGTTTCTTGATC-ATTT
* *
154064 TTAAATGAGCTTTCAAAGAAACTAAGTCTGATTTTCATAAGTTTCTTGATGATTTT-AAATGAGC
1 TTAAATGAGCTTTCAAAGAAACTAAGTCTGATTTTCAGAAGTTTCTTGATGATTTTCAAATGAGT
* * *
154128 TTTCAAAGAAATTAAGTCTGATTTTTAGAAGTTTCTTGA-CGATTT
66 TTTTAAAGAAACTAAGTCTGATTTTCAGAAGTTTCTTGATC-ATTT
* *
154173 TTAAATGAGCTTTCAAAGAAACTAAGTATGATTTTTAGAAGTTTCTTGATGATTTTCAAATGAGT
1 TTAAATGAGCTTTCAAAGAAACTAAGTCTGATTTTCAGAAGTTTCTTGATGATTTTCAAATGAGT
* *
154238 TTTTAAAGAAACTAAGTCCGATTTT-TGAAAGTTTCTTGATCATTT
66 TTTTAAAGAAACTAAGTCTGATTTTCAG-AAGTTTCTTGATCATTT
* *
154283 TTAAATGAGCTTTTAAAGAAA-TAAAGTCTAATTTTCAGAAGTTTCTTGATGATTTTCAAATGAG
1 TTAAATGAGCTTTCAAAGAAACT-AAGTCTGATTTTCAGAAGTTTCTTGATGATTTTCAAATGAG
*
154347 CTTTTAAAGAAACTAAGTCTGATTTTCAGAAGTTTCTTGATCATTT
65 TTTTTAAAGAAACTAAGTCTGATTTTCAGAAGTTTCTTGATCATTT
* * * * *
154393 TTAAAAGAGCTTTTAAAGAAAGTAAGTCTGATGTTCAGAAGTTTCTTGACGATTTTCAAATGAGT
1 TTAAATGAGCTTTCAAAGAAACTAAGTCTGATTTTCAGAAGTTTCTTGATGATTTTCAAATGAGT
* *
154458 TTTTAAAGAAACCAAGTCCGATTTTCAGAAGTTTCTTGATCATTT
66 TTTTAAAGAAACTAAGTCTGATTTTCAGAAGTTTCTTGATCATTT
* * * *
154503 TTAAATAAGCTTTTAAAGAAACTAAGTTTGATTTTCAGAAGTTTCTTGACGATTTTCAAATGAGT
1 TTAAATGAGCTTTCAAAGAAACTAAGTCTGATTTTCAGAAGTTTCTTGATGATTTTCAAATGAGT
*
154568 TTTTAAAGAAATTAAGTCTGATTTTCAGAAGTTTCTTGATCATTT
66 TTTTAAAGAAACTAAGTCTGATTTTCAGAAGTTTCTTGATCATTT
* * ** *
154613 TTAAATGAGCTTTCAAAGAAATTAAGTCTTATTTTCAGGGGTTTCTTGATG-TTTTCAAATG-CT
1 TTAAATGAGCTTTCAAAGAAACTAAGTCTGATTTTCAGAAGTTTCTTGATGATTTTCAAATGAGT
*
154676 TTTTCAAAGAAGCTAA
66 TTTT-AAAGAAACTAA
154692 CCTAATTTTA
Statistics
Matches: 660, Mismatches: 68, Indels: 19
0.88 0.09 0.03
Matches are distributed among these distances:
108 5 0.01
109 256 0.39
110 396 0.60
111 3 0.00
ACGTcount: A:0.34, C:0.10, G:0.15, T:0.41
Consensus pattern (110 bp):
TTAAATGAGCTTTCAAAGAAACTAAGTCTGATTTTCAGAAGTTTCTTGATGATTTTCAAATGAGT
TTTTAAAGAAACTAAGTCTGATTTTCAGAAGTTTCTTGATCATTT
Found at i:154881 original size:41 final size:41
Alignment explanation
Indices: 154781--154883 Score: 106
Period size: 42 Copynumber: 2.5 Consensus size: 41
154771 GATAAGTAAG
*
154781 TCCTTC-GTGCCATC-AGTAAGTCTTTCGAGCATGATGCTTAAA
1 TCCTTCAG-GCCATCTA-TAAGTCTTTCGAGCAAGAT-CTTAAA
* *
154823 TCCTTCGGGTCATCTATAAGTCTTTCGAGCAAGAT-TATAAGA
1 TCCTTCAGGCCATCTATAAGTCTTTCGAGCAAGATCT-TAA-A
154865 -CCTTCAGGCCATCTATAAG
1 TCCTTCAGGCCATCTATAAG
154884 ACCTTCAGGC
Statistics
Matches: 53, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
40 1 0.02
41 20 0.38
42 30 0.57
43 2 0.04
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.32
Consensus pattern (41 bp):
TCCTTCAGGCCATCTATAAGTCTTTCGAGCAAGATCTTAAA
Found at i:156544 original size:139 final size:138
Alignment explanation
Indices: 156261--156769 Score: 579
Period size: 139 Copynumber: 3.7 Consensus size: 138
156251 AAGATGAACC
*
156261 GATCAACATTTCAAATGAAGAGTTCATAATGAGAAGAACTCATCTAAC-A-GAGGGAGAATAAGT
1 GATCAACATTTCTAATGAAGAGTTCATAATGAGAAGAACTCAT-T--CGATGAGGGAGAATAAGT
* * ** ** * **
156324 TCATAATGAGAAGAGCCTGTTTGACCTATCA-CTTGATTCATGGCAT-T---TCAAATCAGTTAC
63 TCATAATGAGAAGAACTTGTTCAACCT-T-AGCTTGATTCATCACATATGAGTTAAATCAGAAAC
156384 ACCTCACTCGAGG
126 ACCTCACTCGAGG
*
156397 GATCAACATTTCTAATGAAGAGTTCATAATGAGAAGAACTCATTCGATGAGGGAGAATATGTTCA
1 GATCAACATTTCTAATGAAGAGTTCATAATGAGAAGAACTCATTCGATGAGGGAGAATAAGTTCA
* * * *
156462 TAATGAGAAGAAGTTGTTCAACCTTAGCTTAATTCATCACATATGAAGTTGAATCAGCAACACCT
66 TAATGAGAAGAACTTGTTCAACCTTAGCTTGATTCATCACATATG-AGTTAAATCAGAAACACCT
156527 CACTCGAGG
130 CACTCGAGG
* * * *
156536 GATCAACATTTCTAGTTG-AGAGTTCATAATAAGAAGAACTCA-TCAGATGAGGGAGAAGAGGTT
1 GATCAACATTTCTA-ATGAAGAGTTCATAATGAGAAGAACTCATTC-GATGAGGGAGAATAAGTT
* * *
156599 CATAATGAGAAGAACTTGTTCAACCTTAACTCGATTCATCACATATGGAGTTTAATCAGAAACAC
64 CATAATGAGAAGAACTTGTTCAACCTTAGCTTGATTCATCACATAT-GAGTTAAATCAGAAACAC
156664 CTCACTCGAGG
128 CTCACTCGAGG
* * * * * * *
156675 GATCAACATGTC-CATGGGAGAGTTCATAATGAGAAGAACTTAATCGATAAGGGAGAAAAAGTTC
1 GATCAACATTTCTAAT-GAAGAGTTCATAATGAGAAGAACTCATTCGATGAGGGAGAATAAGTTC
* *
156739 ATAATGAGAAGAACTTATTCAACCTTGGCTT
65 ATAATGAGAAGAACTTGTTCAACCTTAGCTT
156770 CTTTCCATCG
Statistics
Matches: 323, Mismatches: 36, Indels: 25
0.84 0.09 0.07
Matches are distributed among these distances:
133 2 0.01
134 14 0.04
135 37 0.11
136 42 0.13
137 1 0.00
138 3 0.01
139 219 0.68
140 5 0.02
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.26
Consensus pattern (138 bp):
GATCAACATTTCTAATGAAGAGTTCATAATGAGAAGAACTCATTCGATGAGGGAGAATAAGTTCA
TAATGAGAAGAACTTGTTCAACCTTAGCTTGATTCATCACATATGAGTTAAATCAGAAACACCTC
ACTCGAGG
Found at i:156759 original size:20 final size:20
Alignment explanation
Indices: 156697--156759 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 20
156687 CATGGGAGAG
156697 TTCATAATGAGAAGAACTTA
1 TTCATAATGAGAAGAACTTA
* *
156717 ATCGATAAGGGAGAA-AA---A
1 TTC-ATAA-TGAGAAGAACTTA
156735 GTTCATAATGAGAAGAACTTA
1 -TTCATAATGAGAAGAACTTA
156756 TTCA
1 TTCA
156760 ACCTTGGCTT
Statistics
Matches: 32, Mismatches: 4, Indels: 14
0.64 0.08 0.28
Matches are distributed among these distances:
17 5 0.16
18 7 0.22
19 2 0.06
20 6 0.19
21 7 0.22
22 5 0.16
ACGTcount: A:0.46, C:0.10, G:0.19, T:0.25
Consensus pattern (20 bp):
TTCATAATGAGAAGAACTTA
Found at i:160818 original size:81 final size:80
Alignment explanation
Indices: 160503--160826 Score: 371
Period size: 81 Copynumber: 4.0 Consensus size: 80
160493 TTATAATTCC
* * * * * *
160503 TTTAGTCTTTTACCCAAAGG-CATTTAACCTTTCATCTAACTTGCATGATTGACACTTGTCTGCC
1 TTTA-TCTTTTACTCAAAGGTC-TTTAACCGTTCATCTAACTGGCATAATTAACACTT-TCTGTC
** *
160567 AAATGCACCGCTAGGCTA
63 AAATGCACAACTAGGCCA
* * ** *
160585 TTTATCTTTTACTTAATGGTCTTTAACCGTTCATCTAACTGAAATAATTGACACCTTTCTGTCAA
1 TTTATCTTTTACTCAAAGGTCTTTAACCGTTCATCTAACTGGCATAATTAACA-CTTTCTGTCAA
* *
160650 ATGCACGACTAGGACA
65 ATGCACAACTAGGCCA
* * * * * *
160666 TTTATCTTTTACTCAACGGTCTTTAATCGTTCATCTAAATTGCATAATTAACATATTTCTTTCAA
1 TTTATCTTTTACTCAAAGGTCTTTAACCGTTCATCTAACTGGCATAATTAACA-CTTTCTGTCAA
160731 ATGCACAACTAGGCCA
65 ATGCACAACTAGGCCA
* *
160747 TTTATCTTTTACTCAAAGGTCTTTAACCATTCATCTAACTGGCATAATTAACAGCTTTTTGTCAA
1 TTTATCTTTTACTCAAAGGTCTTTAACCGTTCATCTAACTGGCATAATTAACA-CTTTCTGTCAA
160812 ATGCACAACTAGGCC
65 ATGCACAACTAGGCC
160827 TCAAAGGCAC
Statistics
Matches: 205, Mismatches: 35, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
81 197 0.96
82 8 0.04
ACGTcount: A:0.29, C:0.23, G:0.12, T:0.37
Consensus pattern (80 bp):
TTTATCTTTTACTCAAAGGTCTTTAACCGTTCATCTAACTGGCATAATTAACACTTTCTGTCAAA
TGCACAACTAGGCCA
Found at i:160873 original size:68 final size:68
Alignment explanation
Indices: 160776--161167 Score: 577
Period size: 68 Copynumber: 5.8 Consensus size: 68
160766 TCTTTAACCA
* * * *
160776 TTCATCTAACTGGCATAATTAACAGCTTTTTGTCAAATGCACAACTAGGCCTCAAAGGCACTTAG
1 TTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAATTAGGCCTCAAAGGCACTTAG
160841 CCT
66 CCT
* * * **
160844 TTCATCTAACTGGCATAATTGACACCTTTTTGTCAAATGAACAGTTAGGTGTCAAAGGCACTTAG
1 TTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAATTAGGCCTCAAAGGCACTTAG
160909 CCT
66 CCT
* * * * * *
160912 TTCATCTAGCTGGCATAATTGACATCTTTCTGTCAAATACACAGTTAAGCTTCAAAGGCACTTAG
1 TTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAATTAGGCCTCAAAGGCACTTAG
160977 CCT
66 CCT
* * *
160980 TTCATCTAATTGGCATAATTGACACCTTTCTGTTAAATGCACAGTTAGGCCTCAAAGGCACTTAG
1 TTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAATTAGGCCTCAAAGGCACTTAG
161045 CCT
66 CCT
* *
161048 TTCATCTAACTGGCATAATTGACATCTTTCTATCAAATGCACAATTAGGCCTCAAAGGCACTTAG
1 TTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAATTAGGCCTCAAAGGCACTTAG
161113 CCT
66 CCT
** *
161116 TTCATCTAACTGGCATAATTGACACCTTTCCATCAAATGCACAATTAAGCCT
1 TTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAATTAGGCCT
161168 ATTAATCTTT
Statistics
Matches: 294, Mismatches: 30, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
68 294 1.00
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (68 bp):
TTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAATTAGGCCTCAAAGGCACTTAG
CCT
Found at i:161489 original size:55 final size:55
Alignment explanation
Indices: 161376--161587 Score: 275
Period size: 55 Copynumber: 3.8 Consensus size: 55
161366 TCACATACGA
* * * * *
161376 AAATTAATACACTTAGTATGGATTTCTTA-ATTTGCACACATAGTACCCATA-CG
1 AAATTCATACACTTAGTATGAATTTCTTAGTTTTACACACATAGTGCCCATACCG
* *
161429 AAAATTCATACACATAGTATAAATTTCTTAGTTTTACACACATAGTGCCCATACCG
1 -AAATTCATACACTTAGTATGAATTTCTTAGTTTTACACACATAGTGCCCATACCG
* * * *
161485 AAATTCATACACTTAGTATGAACTTCTTAGTTTTGCACACATAGTGTCCGTACCG
1 AAATTCATACACTTAGTATGAATTTCTTAGTTTTACACACATAGTGCCCATACCG
*
161540 AAATTCATACACTTAGTATGAATTTCTTAAGTTTTTACACACTTAGTG
1 AAATTCATACACTTAGTATGAATTTCTT-AG-TTTTACACACATAGTG
161588 TCATTTGGTA
Statistics
Matches: 138, Mismatches: 16, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
54 25 0.18
55 95 0.69
56 4 0.03
57 14 0.10
ACGTcount: A:0.34, C:0.19, G:0.11, T:0.35
Consensus pattern (55 bp):
AAATTCATACACTTAGTATGAATTTCTTAGTTTTACACACATAGTGCCCATACCG
Found at i:166166 original size:81 final size:81
Alignment explanation
Indices: 166048--166228 Score: 215
Period size: 81 Copynumber: 2.2 Consensus size: 81
166038 TTATAATTCC
* * * * * *
166048 TTTAGTCTTTTACCCAAAGGCATTTAACCTTTCATCTAACT-AGCATGATTGACA-CTTGTTTGC
1 TTTA-TCTTTTACTCAACGGCATTTAACCATTCATCTAACTGA-AATAATTGACACCTT-TCTGC
**
166111 CAAATACACTTCTAGGCCA
63 CAAATACACAACTAGGCCA
*
166130 TTTATCTTTTACTCAACGGTC-TTTAACCATTCATCTAACTGAAATAATTGACACCTTTCTGTCA
1 TTTATCTTTTACTCAACGG-CATTTAACCATTCATCTAACTGAAATAATTGACACCTTTCTGCCA
*
166194 AATGCACAACTAGGCCA
65 AATACACAACTAGGCCA
166211 TTTATCTTTTACTCAACG
1 TTTATCTTTTACTCAACG
166229 ATCATCTAAC
Statistics
Matches: 86, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
81 77 0.90
82 9 0.10
ACGTcount: A:0.29, C:0.24, G:0.10, T:0.36
Consensus pattern (81 bp):
TTTATCTTTTACTCAACGGCATTTAACCATTCATCTAACTGAAATAATTGACACCTTTCTGCCAA
ATACACAACTAGGCCA
Found at i:166277 original size:70 final size:70
Alignment explanation
Indices: 166160--166292 Score: 205
Period size: 70 Copynumber: 1.9 Consensus size: 70
166150 CTTTAACCAT
* *
166160 TCATCTAACTGAAATAATTGACACCTTTCTGTCAAATGCACAACTAGGCCATTTATCTTTTACTC
1 TCATCTAACTGAAATAATTGACACATTTCTATCAAATGCACAACTAGGCCATTTATCTTTTACTC
166225 AACGA
66 AACGA
* * *
166230 TCATCTAACT-AGCATAATTGGCACATTTCTATCAAATGCACAGCTAGGCCATTTATCTTTTAC
1 TCATCTAACTGA-AATAATTGACACATTTCTATCAAATGCACAACTAGGCCATTTATCTTTTAC
166293 ACAAAGTTCT
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
69 1 0.02
70 56 0.98
ACGTcount: A:0.32, C:0.24, G:0.11, T:0.34
Consensus pattern (70 bp):
TCATCTAACTGAAATAATTGACACATTTCTATCAAATGCACAACTAGGCCATTTATCTTTTACTC
AACGA
Found at i:166404 original size:68 final size:68
Alignment explanation
Indices: 166310--166701 Score: 545
Period size: 68 Copynumber: 5.8 Consensus size: 68
166300 TCTTTAATCG
* ** *
166310 TTCATCTAATTGTTATAATTGACACCTTTTTGTCAAATGCACAGTTAGGCCTCAAAGGCACTTAG
1 TTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGTTAGGCCTCAAAGGCACTTAG
166375 CCT
66 CCT
* * * *
166378 TTCATCTAACTGGAATAGTTGACACCTTTCTATCAAATGCACAGTTAGGCCTCAAAGGCAGTTAG
1 TTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGTTAGGCCTCAAAGGCACTTAG
*
166443 TCT
66 CCT
* * *
166446 TTCATCTAACTGGCATAATTGACACTTTTCTGTAAAATGCACAAG-TAGGCCTCAAAGGCACATA
1 TTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCAC-AGTTAGGCCTCAAAGGCACTTA
*
166510 ACCT
65 GCCT
* * * *
166514 TTCATCTAACTAGCATAATTAACACCTTTCTGTCAAAT-CAACAGTTAGGCCTCAAAAGTACTTA
1 TTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGC-ACAGTTAGGCCTCAAAGGCACTTA
166578 GCCT
65 GCCT
* *
166582 TTCATCTAACTGGCATAATTGACACATTTCTGTCAAATGCACAGTTGGGCCTCAAAGGCACTTAG
1 TTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGTTAGGCCTCAAAGGCACTTAG
166647 CCT
66 CCT
* ** *
166650 TTCATCTAACTGGCTTAATTGACACCTTTCCATCAAATGCACAGTTAAGCCT
1 TTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGTTAGGCCT
166702 ATTAATCTTT
Statistics
Matches: 283, Mismatches: 37, Indels: 8
0.86 0.11 0.02
Matches are distributed among these distances:
67 3 0.01
68 277 0.98
69 3 0.01
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (68 bp):
TTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGTTAGGCCTCAAAGGCACTTAG
CCT
Found at i:175001 original size:51 final size:51
Alignment explanation
Indices: 174893--175082 Score: 233
Period size: 51 Copynumber: 3.7 Consensus size: 51
174883 AATATTATCT
* *
174893 ATGTGGGGCATCTTGAAGGCTCACATCAACATGAAAAAGATAGAAGTAATCC
1 ATGTGAGGCATCTTGAAGGCTCACATCAACAT-AAAAAGACAGAAGTAATCC
* *
174945 ATGTGAGGCATCTTGAAGGTTCACATCAGCATAAAAAGACAGAAGTAATCC
1 ATGTGAGGCATCTTGAAGGCTCACATCAACATAAAAAGACAGAAGTAATCC
* * * * * *
174996 ATGTGAGGCATCTTTAAGGTTCACGTCAGCAT-GAAA-ACAGATA-TTATCC
1 ATGTGAGGCATCTTGAAGGCTCACATCAACATAAAAAGACAGA-AGTAATCC
* *
175045 ATGTGGGGCATCTTGAAGGCTCACATCAACATGAAAAG
1 ATGTGAGGCATCTTGAAGGCTCACATCAACATAAAAAG
175083 GTTAGATATT
Statistics
Matches: 121, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
49 37 0.31
50 7 0.06
51 48 0.40
52 29 0.24
ACGTcount: A:0.36, C:0.18, G:0.23, T:0.23
Consensus pattern (51 bp):
ATGTGAGGCATCTTGAAGGCTCACATCAACATAAAAAGACAGAAGTAATCC
Found at i:175055 original size:49 final size:50
Alignment explanation
Indices: 174893--175081 Score: 222
Period size: 49 Copynumber: 3.7 Consensus size: 50
174883 AATATTATCT
*
174893 ATGTGGGGCATCTTGAAGGCTCACATCAACATGAAAA-AGATAGAAGTAATCC
1 ATGTGAGGCATCTTGAAGGCTCACATCAACATGAAAACAGAT---AGTAATCC
* * *
174945 ATGTGAGGCATCTTGAAGGTTCACATCAGCATAAAAAGACAGA-AGTAATCC
1 ATGTGAGGCATCTTGAAGGCTCACATCAACAT-GAAA-ACAGATAGTAATCC
* * * * *
174996 ATGTGAGGCATCTTTAAGGTTCACGTCAGCATGAAAACAGATA-TTATCC
1 ATGTGAGGCATCTTGAAGGCTCACATCAACATGAAAACAGATAGTAATCC
*
175045 ATGTGGGGCATCTTGAAGGCTCACATCAACATGAAAA
1 ATGTGAGGCATCTTGAAGGCTCACATCAACATGAAAA
175082 GGTTAGATAT
Statistics
Matches: 120, Mismatches: 13, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
49 42 0.35
50 4 0.03
51 38 0.32
52 29 0.24
53 3 0.03
54 1 0.01
55 3 0.03
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.23
Consensus pattern (50 bp):
ATGTGAGGCATCTTGAAGGCTCACATCAACATGAAAACAGATAGTAATCC
Found at i:175908 original size:20 final size:19
Alignment explanation
Indices: 175883--175922 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
175873 CATTAACATT
*
175883 TTTGCATCATAAGAACATCA
1 TTTGCAT-ATAAGAAAATCA
*
175903 TTTGCATATATGAAAATCA
1 TTTGCATATAAGAAAATCA
175922 T
1 T
175923 ACATCATCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.40, C:0.15, G:0.10, T:0.35
Consensus pattern (19 bp):
TTTGCATATAAGAAAATCA
Found at i:177334 original size:18 final size:18
Alignment explanation
Indices: 177311--177353 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
177301 ATTAAGTGTT
*
177311 ATTATTTTTATTATCAGC
1 ATTATTTTAATTATCAGC
* * *
177329 ATTATTATAATTATTAGT
1 ATTATTTTAATTATCAGC
177347 ATTATTT
1 ATTATTT
177354 ACTAATGTTA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.33, C:0.05, G:0.05, T:0.58
Consensus pattern (18 bp):
ATTATTTTAATTATCAGC
Found at i:177342 original size:21 final size:19
Alignment explanation
Indices: 177288--177344 Score: 51
Period size: 21 Copynumber: 2.8 Consensus size: 19
177278 AATTATTATA
*
177288 ATTATTATATATTATTAAGT
1 ATTATTATA-ATTATTAAGC
* **
177308 GTTATTATTTTTATTATCAGC
1 ATTATTATAATTATTA--AGC
177329 ATTATTATAATTATTA
1 ATTATTATAATTATTA
177345 GTATTATTTA
Statistics
Matches: 28, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
19 6 0.21
20 7 0.25
21 15 0.54
ACGTcount: A:0.35, C:0.04, G:0.05, T:0.56
Consensus pattern (19 bp):
ATTATTATAATTATTAAGC
Found at i:178987 original size:24 final size:24
Alignment explanation
Indices: 178955--179001 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
178945 TTACATTTCA
178955 TGAAGCACAGAGATCAAAACAAAT
1 TGAAGCACAGAGATCAAAACAAAT
178979 TGAAGCACAGAGATCAAAACAAA
1 TGAAGCACAGAGATCAAAACAAA
179002 ATCTTGAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.55, C:0.17, G:0.17, T:0.11
Consensus pattern (24 bp):
TGAAGCACAGAGATCAAAACAAAT
Found at i:180118 original size:55 final size:56
Alignment explanation
Indices: 179968--180128 Score: 256
Period size: 55 Copynumber: 2.9 Consensus size: 56
179958 ACATCATACG
* * *
179968 GAAATTCATACACTTAGTATGAATTTCTT-AGTTTTGCACACATAGTGCCCTTACC
1 GAAATTCATACACTTAGTATGAATTTCTTAAGTTTTGTACACATAGTGTCCGTACC
180023 GAAATTCATACACTTAGTATGAATTTCTTAA-TTTTGTACACATAGTGTCCGTACC
1 GAAATTCATACACTTAGTATGAATTTCTTAAGTTTTGTACACATAGTGTCCGTACC
180078 GAAATTCATACACTTAGTATGAATTTCTTAAGTTTT-TACACACTTAGTGTC
1 GAAATTCATACACTTAGTATGAATTTCTTAAGTTTTGTACACA--TAGTGTC
180129 ATTTGGTAAT
Statistics
Matches: 99, Mismatches: 3, Indels: 6
0.92 0.03 0.06
Matches are distributed among these distances:
55 87 0.88
56 5 0.05
57 7 0.07
ACGTcount: A:0.30, C:0.19, G:0.12, T:0.39
Consensus pattern (56 bp):
GAAATTCATACACTTAGTATGAATTTCTTAAGTTTTGTACACATAGTGTCCGTACC
Found at i:182350 original size:36 final size:36
Alignment explanation
Indices: 182305--182477 Score: 107
Period size: 38 Copynumber: 4.4 Consensus size: 36
182295 TTCCTATTTG
*
182305 TTTTTTGTTTTGTTTTTTTTATCTTTA-TTTTCTTTC
1 TTTTGTGTTTT-TTTTTTTTATCTTTATTTTTCTTTC
* * * * *
182341 TTTTGTGTTTTTTTTCTATATCTGTTCTTTTATCTCTG
1 TTTTGTGTTTTTTTTTTTTATCT-TTATTTT-TCTTTC
* * * *
182379 TGTTATCTTTTTTTTCTTT-TCTTTCATTTTTCTCTTTTTCC
1 TTTTGTGTTTTTTTTTTTTATCTTT-A-TTTT-TC--TTT-C
182420 TATTTGTTTTGTTTTGTTTTTTTTTATCTTTATTTTTCTTTC
1 T-TTTG---TG-TTT-TTTTTTTTTATCTTTATTTTTCTTTC
182462 TTTTGTGTTTTTTTTT
1 TTTTGTGTTTTTTTTT
182478 ATATCTGTTC
Statistics
Matches: 104, Mismatches: 18, Indels: 30
0.68 0.12 0.20
Matches are distributed among these distances:
35 10 0.10
36 20 0.19
37 9 0.09
38 27 0.26
40 2 0.02
41 5 0.05
42 4 0.04
43 3 0.03
45 3 0.03
46 7 0.07
47 9 0.09
48 5 0.05
ACGTcount: A:0.06, C:0.11, G:0.07, T:0.76
Consensus pattern (36 bp):
TTTTGTGTTTTTTTTTTTTATCTTTATTTTTCTTTC
Found at i:182492 original size:120 final size:120
Alignment explanation
Indices: 182265--182505 Score: 432
Period size: 121 Copynumber: 2.0 Consensus size: 120
182255 TTCTTTTTTT
182265 TTTTTTTTCTTTTCCTTCATTTTTCTCTTTTTCCTATTTGTTTTTTGTTTTGTTTTTTTTATCTT
1 TTTTTTTTCTTTTCCTTCATTTTTCTCTTTTTCCTATTTG-TTTTTGTTTTGTTTTTTTTATCTT
182330 TATTTTCTTTCTTTTGTGTTTTTTTTCTATATCTGTTCTTTTATCTCTGTGTTATC
65 TATTTTCTTTCTTTTGTGTTTTTTTTCTATATCTGTTCTTTTATCTCTGTGTTATC
*
182386 TTTTTTTTCTTTTCTTTCATTTTTCTCTTTTTCCTATTTG-TTTTGTTTTGTTTTTTTTTATCTT
1 TTTTTTTTCTTTTCCTTCATTTTTCTCTTTTTCCTATTTGTTTTTGTTTTG-TTTTTTTTATCTT
182450 TATTTTTCTTTCTTTTGTGTTTTTTTT-TATATCTGTTCTTTTATCTCTGTGTTATC
65 TA-TTTTCTTTCTTTTGTGTTTTTTTTCTATATCTGTTCTTTTATCTCTGTGTTATC
182506 AACTCAATTT
Statistics
Matches: 117, Mismatches: 1, Indels: 5
0.95 0.01 0.04
Matches are distributed among these distances:
119 10 0.09
120 44 0.38
121 63 0.54
ACGTcount: A:0.07, C:0.13, G:0.07, T:0.73
Consensus pattern (120 bp):
TTTTTTTTCTTTTCCTTCATTTTTCTCTTTTTCCTATTTGTTTTTGTTTTGTTTTTTTTATCTTT
ATTTTCTTTCTTTTGTGTTTTTTTTCTATATCTGTTCTTTTATCTCTGTGTTATC
Found at i:192188 original size:71 final size:71
Alignment explanation
Indices: 192065--192222 Score: 199
Period size: 71 Copynumber: 2.2 Consensus size: 71
192055 CTATTCCCAG
* * * * * *
192065 AAAAGGATTGATCCCTTGACCAAAAGGATTAATCCTAAACTTTCTATTGTGCATAGGATCAATGT
1 AAAAGGATAGATCCCTTGACAAAAAAGATTAATCCCAAACTTTCTATCGTGCATAGGATCAATCT
192130 CTTTTC
66 CTTTTC
** * * * *
192136 AAAAGGATAGATCCCTTGGGAAAAAAGATTGATCCCAAACTTTCTGTCGTGCATATGATCGATCT
1 AAAAGGATAGATCCCTTGACAAAAAAGATTAATCCCAAACTTTCTATCGTGCATAGGATCAATCT
192201 CTTTTC
66 CTTTTC
*
192207 AAAAGGATCGATCCCT
1 AAAAGGATAGATCCCT
192223 CAGAGAAAAA
Statistics
Matches: 74, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
71 74 1.00
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31
Consensus pattern (71 bp):
AAAAGGATAGATCCCTTGACAAAAAAGATTAATCCCAAACTTTCTATCGTGCATAGGATCAATCT
CTTTTC
Done.