genome.fa.s8447.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008447.1 Hibiscus syriacus cultivar Beakdansim tig00111252_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  276830

Tables:   1   

This is table  1  of  1  ( 98 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
669--737	34	2.1	31	86	7	93	23	27	15	33	1.95
1015--1075	21	2.9	22	76	20	67	19	26	34	19	1.96
1112--1190	34	2.3	35	86	6	108	25	24	31	18	1.98
1130--1197	35	2.0	34	94	2	118	23	26	29	20	1.99
1175--1212	20	2.0	20	89	5	60	18	21	36	23	1.95
37993--38073	40	2.0	40	92	0	135	35	28	14	20	1.93
39001--39064	29	2.2	29	85	2	83	32	25	4	37	1.77
42880--42923	20	2.2	20	84	8	54	61	2	4	31	1.28
57638--57686	20	2.4	20	80	10	55	30	14	18	36	1.90
66316--66449	59	2.3	59	89	0	205	28	17	25	28	1.98
67063--67460	47	8.6	47	91	2	653	23	24	12	40	1.88
67063--67799	94	7.8	94	77	11	671	26	22	10	41	1.86
67620--67693	20	3.3	20	70	22	67	20	27	12	40	1.87
67587--67799	47	4.5	47	93	0	363	22	23	10	42	1.85
67633--67767	27	5.5	27	63	22	82	22	22	12	41	1.88
67252--67928	338	2.0	338	96	2	1265	29	20	9	41	1.83
78076--78279	98	2.1	99	97	1	383	35	19	9	35	1.85
80405--80459	25	2.2	25	80	6	67	61	0	0	38	0.96
80393--80478	34	2.5	34	94	1	145	59	0	0	40	0.97
82820--82917	33	3.0	33	98	0	187	35	24	16	23	1.95
87813--87845	15	2.2	15	100	0	66	33	33	18	15	1.92
87957--88025	24	2.8	26	83	12	85	31	24	5	37	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87990--88025	12	3.0	12	91	0	63	36	25	5	33	1.79
88397--88539	64	2.2	64	81	4	173	28	20	18	32	1.96
94858--94926	24	2.8	26	83	12	85	31	24	5	37	1.79
94891--94926	12	3.0	12	91	0	63	36	25	5	33	1.79
95234--95416	64	2.9	63	86	4	244	25	18	20	35	1.95
95234--95441	64	3.3	64	85	4	217	26	18	20	34	1.96
101620--101652	15	2.2	15	100	0	66	33	33	18	15	1.92
101764--101832	24	2.8	26	83	12	85	31	24	5	37	1.79
101797--101832	12	3.0	12	91	0	63	36	25	5	33	1.79
102141--102323	64	2.9	63	85	4	235	25	17	20	36	1.95
102141--102348	64	3.3	64	83	4	208	26	17	20	34	1.95
103438--103520	33	2.4	33	86	10	103	40	24	15	19	1.90
103464--103528	33	2.0	33	100	0	130	36	24	15	23	1.93
108837--108935	45	2.2	45	90	3	155	31	25	7	36	1.83
109025--109153	59	2.2	59	84	0	159	28	23	17	31	1.97
120878--120928	24	2.2	24	85	3	68	41	9	9	39	1.71
126033--126083	23	2.3	23	82	3	68	37	9	7	45	1.67
127010--127034	13	1.9	13	100	0	50	40	4	0	56	1.18
127036--127104	5	13.8	5	96	0	129	18	18	20	42	1.90
129568--129624	2	28.5	2	100	0	114	49	0	0	50	1.00
136631--136671	2	20.5	2	89	0	64	48	0	4	46	1.23
137009--137059	22	2.4	22	77	12	61	47	3	25	23	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
145001--145034	14	2.3	15	90	5	52	26	2	0	70	1.01
157498--157601	35	2.9	36	92	2	174	33	13	18	34	1.90
157597--157631	16	2.1	17	89	5	54	37	14	11	37	1.82
162902--163002	35	2.8	36	87	4	150	34	12	14	37	1.85
165549--165578	15	2.0	15	100	0	60	60	0	20	20	1.37
165552--165586	15	2.3	15	90	0	52	65	0	17	17	1.27
165685--165710	9	2.9	9	100	0	52	80	0	19	0	0.71
165707--165807	18	5.8	16	69	18	51	75	0	2	20	1.00
165731--165814	39	2.2	37	87	10	123	72	0	2	25	0.96
165706--165787	25	3.5	22	74	18	69	75	1	2	20	0.98
165667--165801	49	2.7	49	76	11	130	77	0	5	16	1.01
165733--165873	38	3.5	41	76	17	134	69	1	2	26	1.08
166202--166291	36	2.5	37	81	7	103	31	14	14	40	1.86
166231--166300	36	1.9	37	91	8	117	27	15	15	41	1.88
166761--167183	106	4.0	104	80	8	351	22	20	24	33	1.97
166919--167379	109	4.4	108	81	9	477	21	18	26	33	1.97
167159--167350	98	2.0	97	92	1	321	21	16	30	32	1.95
167960--168118	67	2.4	67	87	4	223	34	10	22	32	1.88
168077--168248	36	4.9	36	68	18	121	37	12	20	28	1.90
168161--168333	37	4.9	37	70	16	152	38	13	20	27	1.90
168060--168436	102	3.7	102	93	0	630	37	12	20	29	1.90
168365--168458	37	2.5	37	81	3	109	38	13	19	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
169634--169983	183	1.9	183	96	0	646	30	21	21	26	1.99
173876--173905	15	2.0	15	100	0	60	60	0	20	20	1.37
173879--173913	15	2.3	15	90	0	52	65	0	17	17	1.27
173993--174119	9	13.4	9	69	18	62	76	0	6	16	1.03
174055--174174	39	3.0	38	79	17	120	68	0	2	28	1.08
174055--174187	40	3.4	39	74	20	116	68	1	2	27	1.10
174047--174114	10	6.8	10	75	15	52	77	1	1	19	0.92
174186--174247	23	2.8	22	75	20	58	67	4	6	20	1.32
174515--174615	36	2.8	37	86	6	134	30	15	14	38	1.88
194501--194626	57	2.2	57	80	5	139	24	16	22	36	1.94
194602--194672	13	5.5	13	87	0	88	32	12	23	30	1.92
197843--198069	66	3.5	66	88	1	357	30	16	15	36	1.91
201086--201126	2	21.0	2	95	5	75	48	0	0	51	1.00
203262--203299	20	1.9	20	100	0	76	5	13	0	81	0.85
206608--206645	18	2.1	19	90	5	60	63	5	7	23	1.42
210482--210533	26	2.0	26	88	7	79	69	3	13	13	1.33
212444--212569	59	2.1	59	91	0	198	29	23	17	29	1.97
212729--212754	2	13.0	2	100	0	52	50	0	0	50	1.00
220593--220618	12	2.2	12	100	0	52	26	34	38	0	1.57
222440--222508	34	2.0	34	100	0	138	31	23	28	15	1.95
222557--222586	2	15.5	2	93	6	53	50	0	0	50	1.00
225421--225454	2	17.5	2	93	6	61	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
225486--225510	7	3.6	7	100	0	50	36	0	0	64	0.94
231927--231959	2	17.0	2	93	6	59	51	0	0	48	1.00
232042--232089	3	15.7	3	82	4	60	37	0	2	60	1.09
233896--233953	2	29.0	2	100	0	116	50	0	0	50	1.00
238988--239028	21	2.0	21	90	0	64	63	0	21	14	1.30
252232--252379	52	2.8	52	81	6	176	41	16	20	21	1.90
253680--254156	40	11.9	40	95	0	774	28	16	13	42	1.85
253859--253927	23	3.3	23	61	23	60	30	15	15	37	1.90
256672--256727	28	2.1	26	86	6	76	35	0	0	64	0.94
257322--257615	152	1.9	151	89	8	454	32	16	14	36	1.89

Tables:   1

The End!