Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008448.1 Hibiscus syriacus cultivar Beakdansim tig00111253_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 805563
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 2 of 4
Found at i:282003 original size:64 final size:63
Alignment explanation
Indices: 281903--282027 Score: 241
Period size: 64 Copynumber: 2.0 Consensus size: 63
281893 GTTGTCAAAC
281903 CGAACATCATTACACTTATTAGCGAGGCTTATCAGGTGAGTACATTTATTGTATTTATATGGT
1 CGAACATCATTACACTTATTAGCGAGGCTTATCAGGTGAGTACATTTATTGTATTTATATGGT
281966 CGAACATCATTACAACTTATTAGCGAGGCTTATCAGGTGAGTACATTTATTGTATTTATATG
1 CGAACATCATTAC-ACTTATTAGCGAGGCTTATCAGGTGAGTACATTTATTGTATTTATATG
282028 AGATGAGTAA
Statistics
Matches: 61, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
63 13 0.21
64 48 0.79
ACGTcount: A:0.30, C:0.14, G:0.18, T:0.38
Consensus pattern (63 bp):
CGAACATCATTACACTTATTAGCGAGGCTTATCAGGTGAGTACATTTATTGTATTTATATGGT
Found at i:282239 original size:46 final size:46
Alignment explanation
Indices: 282169--282316 Score: 201
Period size: 46 Copynumber: 3.3 Consensus size: 46
282159 AAATGAATAA
* *
282169 ATAAATGAAAATGCATATTGGTGCATTATCAGCATGAAAGGATGCC
1 ATAAATGAAAATGCATAATGGTGCATTATCGGCATGAAAGGATGCC
** * ** *
282215 ATAAATGAAAATGCATAACAGTGCATTA--GGCAAGAAAATATTCC
1 ATAAATGAAAATGCATAATGGTGCATTATCGGCATGAAAGGATGCC
*
282259 ATAAATGAAAATCCATAATGGTGCATTATCGGCATGAAAGGATGCC
1 ATAAATGAAAATGCATAATGGTGCATTATCGGCATGAAAGGATGCC
282305 ATAAATGAAAAT
1 ATAAATGAAAAT
282317 AAAGAATAAT
Statistics
Matches: 85, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
44 36 0.42
46 49 0.58
ACGTcount: A:0.44, C:0.13, G:0.19, T:0.24
Consensus pattern (46 bp):
ATAAATGAAAATGCATAATGGTGCATTATCGGCATGAAAGGATGCC
Found at i:286532 original size:37 final size:37
Alignment explanation
Indices: 286491--286948 Score: 203
Period size: 37 Copynumber: 11.9 Consensus size: 37
286481 AGTCAGACTC
*
286491 AAGATCGATTTTCTTCACTACTCTTCGGTGAAGGCTT
1 AAGATCGATTTGCTTCACTACTCTTCGGTGAAGGCTT
* * * *
286528 AAGATTGAATTTACTTCACTACTCTTTGATGAAGGCTT
1 AAGATCG-ATTTGCTTCACTACTCTTCGGTGAAGGCTT
* *
286566 AAGATGGCCCGGA--GGACTT-A-TTCATCATGCTC-G-GAAGGCTT
1 AAGAT----C-GATTTG-CTTCACTAC-TC-T--TCGGTGAAGGCTT
* *
286607 ACTGAT-GAATTTGCTTCACTACTCTTTGGTGAAGGCTT
1 A-AGATCG-ATTTGCTTCACTACTCTTCGGTGAAGGCTT
* * *
286645 AAGATTGATTTGCTTCACTACTTTTCGGTGAAGGTTT
1 AAGATCGATTTGCTTCACTACTCTTCGGTGAAGGCTT
* *
286682 AAGATGGCCCGGA--GGACTT-AAT-CATCATGCTC-G-GAAGGCTT
1 AAGAT----C-GATTTG-CTTCACTAC-TC-T--TCGGTGAAGGCTT
* *
286723 ACTGAT-GAATTTGCTTCACTACTCTTCCGTGAAGGCTT
1 A-AGATCG-ATTTGCTTCACTACTCTTCGGTGAAGGCTT
* *
286761 ATGAT-GAATTTGCTTCACTAATCTTCGGTGAAGGCTT
1 AAGATCG-ATTTGCTTCACTACTCTTCGGTGAAGGCTT
* * *
286798 TAGATTGATTTGCTTCACTACTCTTTGGTGAAGGCTT
1 AAGATCGATTTGCTTCACTACTCTTCGGTGAAGGCTT
* * * * * **
286835 AAGATAGCTCGGATGACTT-AAT-CATCATCCTTGGAAGGCTT
1 AAGATCGAT---TTG-CTTCACTAC-TCTTCGGT-GAAGGCTT
* * *
286876 ACTGATGGATTTGCTTCACTACTCTTCCGTGAAGGCTT
1 A-AGATCGATTTGCTTCACTACTCTTCGGTGAAGGCTT
* *
286914 ATGATGGATTTGCTTCACTACTCTTCGGTGAAGGC
1 AAGATCGATTTGCTTCACTACTCTTCGGTGAAGGC
286949 ATTAGATTTC
Statistics
Matches: 324, Mismatches: 49, Indels: 96
0.69 0.10 0.20
Matches are distributed among these distances:
36 5 0.02
37 149 0.46
38 72 0.22
39 23 0.07
40 19 0.06
41 37 0.11
42 15 0.05
43 4 0.01
ACGTcount: A:0.23, C:0.19, G:0.22, T:0.35
Consensus pattern (37 bp):
AAGATCGATTTGCTTCACTACTCTTCGGTGAAGGCTT
Found at i:286708 original size:116 final size:117
Alignment explanation
Indices: 286498--286799 Score: 475
Period size: 116 Copynumber: 2.6 Consensus size: 117
286488 CTCAAGATCG
* * *
286498 ATTTTCTTCACTACTCTTCGGTGAAGGCTTAAGATTGAATTTACTTCACTACTCTTT-GATGAAG
1 ATTTGCTTCACTACTCTTCGGTGAAGGCTTAAGATTGAATTTGCTTCACTACT-TTTCGGTGAAG
* *
286562 GCTTAAGATGGCCCGGAGGACTTATTCATCATGCTCGGAAGGCTTACTGATGA
65 GTTTAAGATGGCCCGGAGGACTTAATCATCATGCTCGGAAGGCTTACTGATGA
*
286615 ATTTGCTTCACTACTCTTTGGTGAAGGCTTAAGATTG-ATTTGCTTCACTACTTTTCGGTGAAGG
1 ATTTGCTTCACTACTCTTCGGTGAAGGCTTAAGATTGAATTTGCTTCACTACTTTTCGGTGAAGG
286679 TTTAAGATGGCCCGGAGGACTTAATCATCATGCTCGGAAGGCTTACTGATGA
66 TTTAAGATGGCCCGGAGGACTTAATCATCATGCTCGGAAGGCTTACTGATGA
* * * *
286731 ATTTGCTTCACTACTCTTCCGTGAAGGCTTATGA-TGAATTTGCTTCACTAATCTTCGGTGAAGG
1 ATTTGCTTCACTACTCTTCGGTGAAGGCTTAAGATTGAATTTGCTTCACTACTTTTCGGTGAAGG
286795 CTTTA
66 -TTTA
286800 GATTGATTTG
Statistics
Matches: 171, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
115 5 0.03
116 127 0.74
117 39 0.23
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.35
Consensus pattern (117 bp):
ATTTGCTTCACTACTCTTCGGTGAAGGCTTAAGATTGAATTTGCTTCACTACTTTTCGGTGAAGG
TTTAAGATGGCCCGGAGGACTTAATCATCATGCTCGGAAGGCTTACTGATGA
Found at i:286744 original size:79 final size:77
Alignment explanation
Indices: 286637--286920 Score: 267
Period size: 79 Copynumber: 3.7 Consensus size: 77
286627 ACTCTTTGGT
* * * * * *
286637 GAAGGCTTA-AGATTGATTTGCTTCACTACTTTTCGGTGAAGGTTTAAGATGGCCCGGAGGACTT
1 GAAGGCTTACTGA-TGATTTGCTTCACTACTCTTCCGTGAAGGCTTAAGATGGCTCGGATGACTT
286701 AATCATCATGCTCG
65 AATCATCATGCT-G
* ** * ** *
286715 GAAGGCTTACTGATGAATTTGCTTCACTACTCTTCCGTGAAGGCTTATGATGAATTTGCTTCAC-
1 GAAGGCTTACTGATG-ATTTGCTTCACTACTCTTCCGTGAAGGCTTAAGATG-GCTCGGATGACT
* *
286779 TAATCTTC--GGT-
64 TAATCATCATGCTG
** *
286790 GAAGGCTT--TAGATTGATTTGCTTCACTACTCTTTGGTGAAGGCTTAAGATAGCTCGGATGACT
1 GAAGGCTTACT-GA-TGATTTGCTTCACTACTCTTCCGTGAAGGCTTAAGATGGCTCGGATGACT
*
286853 TAATCATCATCCTTG
64 TAATCATCATGC-TG
*
286868 GAAGGCTTACTGATGGATTTGCTTCACTACTCTTCCGTGAAGGCTTATGATGG
1 GAAGGCTTACTGAT-GATTTGCTTCACTACTCTTCCGTGAAGGCTTAAGATGG
286921 ATTTGCTTCA
Statistics
Matches: 161, Mismatches: 32, Indels: 25
0.74 0.15 0.11
Matches are distributed among these distances:
73 6 0.04
74 41 0.25
75 10 0.06
77 3 0.02
78 20 0.12
79 77 0.48
80 4 0.02
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.35
Consensus pattern (77 bp):
GAAGGCTTACTGATGATTTGCTTCACTACTCTTCCGTGAAGGCTTAAGATGGCTCGGATGACTTA
ATCATCATGCTG
Found at i:286809 original size:153 final size:153
Alignment explanation
Indices: 286599--286956 Score: 583
Period size: 153 Copynumber: 2.3 Consensus size: 153
286589 ATCATGCTCG
* *
286599 GAAGGCTTACTGATGAATTTGCTTCACTACTCTTTGGTGAAGGCTTAAGATTGATTTGCTTCACT
1 GAAGGCTTA-TGATGAATTTGCTTCACTACTCTTCGGTGAAGGCTTTAGATTGATTTGCTTCACT
* * *
286664 ACT-TTTCGGTGAAGGTTTAAGATGGCCCGGAGGACTTAATCATCATGCTCGGAAGGCTTACTGA
65 ACTCTTT-GGTGAAGGCTTAAGATAGCCCGGAGGACTTAATCATCATCCTCGGAAGGCTTACTGA
286728 TGAATTTGCTTCACTACTCTTCCGT
129 TGAATTTGCTTCACTACTCTTCCGT
*
286753 GAAGGCTTATGATGAATTTGCTTCACTAATCTTCGGTGAAGGCTTTAGATTGATTTGCTTCACTA
1 GAAGGCTTATGATGAATTTGCTTCACTACTCTTCGGTGAAGGCTTTAGATTGATTTGCTTCACTA
* * *
286818 CTCTTTGGTGAAGGCTTAAGATAGCTCGGATGACTTAATCATCATCCTTGGAAGGCTTACTGATG
66 CTCTTTGGTGAAGGCTTAAGATAGCCCGGAGGACTTAATCATCATCCTCGGAAGGCTTACTGATG
*
286883 GATTTGCTTCACTACTCTTCCGT
131 AATTTGCTTCACTACTCTTCCGT
* *
286906 GAAGGCTTATGATGGATTTGCTTCACTACTCTTCGGTGAAGGCATTAGATT
1 GAAGGCTTATGATGAATTTGCTTCACTACTCTTCGGTGAAGGCTTTAGATT
286957 TCCCTAAGGA
Statistics
Matches: 190, Mismatches: 13, Indels: 3
0.92 0.06 0.01
Matches are distributed among these distances:
153 178 0.94
154 12 0.06
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.36
Consensus pattern (153 bp):
GAAGGCTTATGATGAATTTGCTTCACTACTCTTCGGTGAAGGCTTTAGATTGATTTGCTTCACTA
CTCTTTGGTGAAGGCTTAAGATAGCCCGGAGGACTTAATCATCATCCTCGGAAGGCTTACTGATG
AATTTGCTTCACTACTCTTCCGT
Found at i:286882 original size:116 final size:116
Alignment explanation
Indices: 286753--287042 Score: 379
Period size: 116 Copynumber: 2.5 Consensus size: 116
286743 ACTCTTCCGT
* * *
286753 GAAGGCTTA-TGATGAATTTGCTTCACTAATCTTCGGTGAAGGCTTTAGATTGATTTGCTTCACT
1 GAAGGCTTACTGATGGATTTGCTTCACTACTCTTCAGTGAAGGCTTTAGATTGATTTGCTTCACT
* * * * *
286817 ACTCTTTGGTGAAGGC-TTAAGATAGCTCGGATGACTTAATCATCATCCTTG
66 ACTCTTCGGTGAAGGCATT-AGATAGCCCGAAGGACTTAATCATCATCCTCG
* *
286868 GAAGGCTTACTGATGGATTTGCTTCACTACTCTTCCGTGAAGGC-TTATGATGGATTTGCTTCAC
1 GAAGGCTTACTGATGGATTTGCTTCACTACTCTTCAGTGAAGGCTTTA-GATTGATTTGCTTCAC
** * *
286932 TACTCTTCGGTGAAGGCATTAGATTTCCCTAAGGACTTAATCATCATGCTCG
65 TACTCTTCGGTGAAGGCATTAGATAGCCCGAAGGACTTAATCATCATCCTCG
* * * *
286984 GAAGGCTTACTGATGGATTTTCTTTACTACTCTTCAGTGAAGGCTTAAGATTGACTTGC
1 GAAGGCTTACTGATGGATTTGCTTCACTACTCTTCAGTGAAGGCTTTAGATTGATTTGC
287043 CCTAATCTCA
Statistics
Matches: 152, Mismatches: 19, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
115 12 0.08
116 136 0.89
117 4 0.03
ACGTcount: A:0.23, C:0.19, G:0.22, T:0.36
Consensus pattern (116 bp):
GAAGGCTTACTGATGGATTTGCTTCACTACTCTTCAGTGAAGGCTTTAGATTGATTTGCTTCACT
ACTCTTCGGTGAAGGCATTAGATAGCCCGAAGGACTTAATCATCATCCTCG
Found at i:286983 original size:269 final size:270
Alignment explanation
Indices: 286498--287030 Score: 809
Period size: 269 Copynumber: 2.0 Consensus size: 270
286488 CTCAAGATCG
* *
286498 ATTTTCTTCACTACTCTTCGGTGAAGGCTTAAGATTGAATTTACTTCACTACTCTTTGATGAAGG
1 ATTTGCTTCACTAATCTTCGGTGAAGGCTTAAGATTGAATTTACTTCACTACTCTTTGATGAAGG
* * *
286563 CTTAAGATGGCCCGGAGGACTTATTCATCATGCTCGGAAGGCTTACTGATGAATTTGCTTCACTA
66 CTTAAGATAGCCCGGAGGACTTAATCATCATCCTCGGAAGGCTTACTGATGAATTTGCTTCACTA
** * * *
286628 CTCTTTGGTGAAGGCTTAAGATTGATTTGCTTCACTACTTTTCGGTGAAGGTTTAAGATGGCCCG
131 CTCTTCCGTGAAGGCTTAAGATGGATTTGCTTCACTACTCTTCGGTGAAGGATTAAGATGGCCCG
* *
286693 GAGGACTTAATCATCATGCTCGGAAGGCTTACTGATGAATTTGCTTCACTACTCTTCCGTGAAGG
196 AAGGACTTAATCATCATGCTCGGAAGGCTTACTGATGAATTTGCTTCACTACTCTTCAGTGAAGG
286758 CTTATGATGA
261 CTTATGATGA
* * *
286768 ATTTGCTTCACTAATCTTCGGTGAAGGCTTTAGATTG-ATTTGCTTCACTACTCTTTGGTGAAGG
1 ATTTGCTTCACTAATCTTCGGTGAAGGCTTAAGATTGAATTTACTTCACTACTCTTTGATGAAGG
* * * *
286832 CTTAAGATAGCTCGGATGACTTAATCATCATCCTTGGAAGGCTTACTGATGGATTTGCTTCACTA
66 CTTAAGATAGCCCGGAGGACTTAATCATCATCCTCGGAAGGCTTACTGATGAATTTGCTTCACTA
* **
286897 CTCTTCCGTGAAGGCTTATGATGGATTTGCTTCACTACTCTTCGGTGAAGGCATT-AGATTTCCC
131 CTCTTCCGTGAAGGCTTAAGATGGATTTGCTTCACTACTCTTCGGTGAAGG-ATTAAGATGGCCC
* * * *
286961 TAAGGACTTAATCATCATGCTCGGAAGGCTTACTGATGGATTTTCTTTACTACTCTTCAGTGAAG
195 GAAGGACTTAATCATCATGCTCGGAAGGCTTACTGATGAATTTGCTTCACTACTCTTCAGTGAAG
287026 GCTTA
260 GCTTA
287031 AGATTGACTT
Statistics
Matches: 236, Mismatches: 26, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
269 200 0.85
270 36 0.15
ACGTcount: A:0.23, C:0.20, G:0.22, T:0.36
Consensus pattern (270 bp):
ATTTGCTTCACTAATCTTCGGTGAAGGCTTAAGATTGAATTTACTTCACTACTCTTTGATGAAGG
CTTAAGATAGCCCGGAGGACTTAATCATCATCCTCGGAAGGCTTACTGATGAATTTGCTTCACTA
CTCTTCCGTGAAGGCTTAAGATGGATTTGCTTCACTACTCTTCGGTGAAGGATTAAGATGGCCCG
AAGGACTTAATCATCATGCTCGGAAGGCTTACTGATGAATTTGCTTCACTACTCTTCAGTGAAGG
CTTATGATGA
Found at i:288390 original size:119 final size:119
Alignment explanation
Indices: 288201--288422 Score: 363
Period size: 119 Copynumber: 1.9 Consensus size: 119
288191 TGGTATGGGT
* * * * *
288201 CTTCAAAATGCCCCAACGCCTAAAATTGTAAGGTTCATTCTCAATGCTTTCTTAGTTTGAATCTT
1 CTTCAAAATGCCCCAACACCTAAAATTGTAAGGCTCATTCTCAATGCCTCCTTAGTCTGAATCTT
* *
288266 GTCATCTCAACATGATGTGGGTTCAGTCATTCCCCAATATTATCTTATACGGGC
66 ATCATCTCAACATGATGTGGGTTCAGTCATGCCCCAATATTATCTTATACGGGC
* *
288320 CTTCAAAATGCCCCAACACCTCAAATTGTAAGGCTCATTCTCAATGCCTCCTTGGTCTGAATCTT
1 CTTCAAAATGCCCCAACACCTAAAATTGTAAGGCTCATTCTCAATGCCTCCTTAGTCTGAATCTT
288385 ATCATCTCAACATGATGTGGGTTCAGTCATGCCCCAAT
66 ATCATCTCAACATGATGTGGGTTCAGTCATGCCCCAAT
288423 GTGGGTATTC
Statistics
Matches: 94, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
119 94 1.00
ACGTcount: A:0.26, C:0.26, G:0.15, T:0.33
Consensus pattern (119 bp):
CTTCAAAATGCCCCAACACCTAAAATTGTAAGGCTCATTCTCAATGCCTCCTTAGTCTGAATCTT
ATCATCTCAACATGATGTGGGTTCAGTCATGCCCCAATATTATCTTATACGGGC
Found at i:295787 original size:2 final size:2
Alignment explanation
Indices: 295780--295808 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
295770 ATGTACTATG
295780 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
295809 TAACATGTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:299106 original size:17 final size:18
Alignment explanation
Indices: 299077--299113 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
299067 TTACATTTTA
*
299077 TTTTAATTAAAAGTTATT
1 TTTTAATTAAAAGATATT
299095 TTTTAATT-AAAGATATT
1 TTTTAATTAAAAGATATT
299112 TT
1 TT
299114 ATTTGTTTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (18 bp):
TTTTAATTAAAAGATATT
Found at i:303717 original size:54 final size:55
Alignment explanation
Indices: 303572--303723 Score: 200
Period size: 55 Copynumber: 2.8 Consensus size: 55
303562 AAGTGTGCAG
* * ** *
303572 AAAACTTAAGAAATTCAGACTAAGTGTATGAATTTCTGTATGGGCACTTTTTGTGC
1 AAAAC-TAAGAAATTCATACTAAGTGTATGAATTTCCGTATGGGCACAATGTGTGC
*
303628 AAAACTAAAAAATTCATACTAAGTGTATGAATTTCCGTATGGGCACAATGTGTGC
1 AAAACTAAGAAATTCATACTAAGTGTATGAATTTCCGTATGGGCACAATGTGTGC
* * *
303683 GAAA-TAAGAAATTCATACCAAGTGTATAAATTTCC-TATGGG
1 AAAACTAAGAAATTCATACTAAGTGTATGAATTTCCGTATGGG
303724 AAATATATGT
Statistics
Matches: 86, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
53 6 0.07
54 28 0.33
55 47 0.55
56 5 0.06
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (55 bp):
AAAACTAAGAAATTCATACTAAGTGTATGAATTTCCGTATGGGCACAATGTGTGC
Found at i:304002 original size:68 final size:68
Alignment explanation
Indices: 303901--304482 Score: 900
Period size: 68 Copynumber: 8.7 Consensus size: 68
303891 AGATTCATAC
* * * * * * *
303901 GCCTAATTGTACAATTGACAGAAAGGTGTCATTTATTCCAGTTAGATGAAAAGTTAAGTGTCTTT
1 GCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCTTT
303966 GAG
66 GAG
* ** * *
303969 GCCTAACTGTGCATTTGACGGAAAAATATCATTTATGCCAGTTAGATGAAAGGCTAAGTGTCTTT
1 GCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCTTT
304034 GAG
66 GAG
*
304037 GCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGTTAAGTGCCTTT
1 GCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCTTT
*
304102 AAG
66 GAG
*
304105 GCCTAACTGTGCATTTGACAGAAAGGTGTAATTTATGCCAGTTAGATGAAAGGCTAAGTGCCTTT
1 GCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCTTT
304170 GAG
66 GAG
304173 GCCTAACTGTGCATTTGAC----A---G--A---ATGCCAGTTAGATGAAAGGCTAAGTGCCTTT
1 GCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCTTT
304226 GAG
66 GAG
*
304229 GCCTAAATGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCTTT
1 GCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCTTT
304294 GAG
66 GAG
*
304297 GCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAATTAGATGAAAGGCTAAGTGCCTTT
1 GCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCTTT
304362 GAG
66 GAG
* *
304365 GCCTAATTGTACATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCTTT
1 GCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCTTT
304430 GAG
66 GAG
*
304433 GCCTAACTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAA
1 GCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAA
304483 CGGTAAAATA
Statistics
Matches: 473, Mismatches: 29, Indels: 24
0.90 0.06 0.05
Matches are distributed among these distances:
56 52 0.11
59 1 0.00
60 1 0.00
61 1 0.00
63 1 0.00
64 1 0.00
65 1 0.00
68 415 0.88
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (68 bp):
GCCTAACTGTGCATTTGACAGAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCTTT
GAG
Found at i:304401 original size:260 final size:260
Alignment explanation
Indices: 303938--304455 Score: 901
Period size: 260 Copynumber: 2.0 Consensus size: 260
303928 GTCATTTATT
* * * *
303938 CCAGTTAGATGAAAAGTTAAGTGTCTTTGAGGCCTAACTGTGCATTTGACGGAAAAATATCATTT
1 CCAGTTAGATGAAAAGCTAAGTGCCTTTGAGGCCTAAATGTGCATTTGACAGAAAAATATCATTT
*
304003 ATGCCAGTTAGATGAAAGGCTAAGTGTCTTTGAGGCCTAACTGTGCATTTGACAGAAAGGTGTCA
66 ATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCCTAACTGTGCATTTGACAGAAAGGTGTCA
* * *
304068 TTTATGCCAGTTAGATGAAAGGTTAAGTGCCTTTAAGGCCTAACTGTGCATTTGACAGAAAGGTG
131 TTTATGCCAATTAGATGAAAGGCTAAGTGCCTTTAAGGCCTAACTGTACATTTGACAGAAAGGTG
304133 TAATTTATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCCTAACTGTGCATTTGACAGAATG
196 TAATTTATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCCTAACTGTGCATTTGACAGAATG
* ** *
304198 CCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCCTAAATGTGCATTTGACAGAAAGGTGTCATTT
1 CCAGTTAGATGAAAAGCTAAGTGCCTTTGAGGCCTAAATGTGCATTTGACAGAAAAATATCATTT
304263 ATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCCTAACTGTGCATTTGACAGAAAGGTGTCA
66 ATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCCTAACTGTGCATTTGACAGAAAGGTGTCA
* *
304328 TTTATGCCAATTAGATGAAAGGCTAAGTGCCTTTGAGGCCTAATTGTACATTTGACAGAAAGGTG
131 TTTATGCCAATTAGATGAAAGGCTAAGTGCCTTTAAGGCCTAACTGTACATTTGACAGAAAGGTG
*
304393 TCATTTATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCCTAACTGTGCATTTGACAGAA
196 TAATTTATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCCTAACTGTGCATTTGACAGAA
304456 AGGTGTCAAT
Statistics
Matches: 243, Mismatches: 15, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
260 243 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (260 bp):
CCAGTTAGATGAAAAGCTAAGTGCCTTTGAGGCCTAAATGTGCATTTGACAGAAAAATATCATTT
ATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCCTAACTGTGCATTTGACAGAAAGGTGTCA
TTTATGCCAATTAGATGAAAGGCTAAGTGCCTTTAAGGCCTAACTGTACATTTGACAGAAAGGTG
TAATTTATGCCAGTTAGATGAAAGGCTAAGTGCCTTTGAGGCCTAACTGTGCATTTGACAGAATG
Found at i:304573 original size:81 final size:81
Alignment explanation
Indices: 304432--304639 Score: 362
Period size: 81 Copynumber: 2.6 Consensus size: 81
304422 GTGCCTTTGA
* *
304432 GGCCTAACTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTAAAATACCGT
1 GGCCTAACTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACAGTAAAATACCGT
304497 TGAGTAAAAGAATAAT
66 TGAGTAAAAGAATAAT
* *
304513 GGTCTAACTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACAGTTAAATACCGT
1 GGCCTAACTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACAGTAAAATACCGT
304578 TGAGTAAAAGAATAAT
66 TGAGTAAAAGAATAAT
* *
304594 GGCCTAACTGTGCATTTGGCAGCAAGGTGTCAATTATGCCCGTTAG
1 GGCCTAACTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAG
304640 TTATGCATTT
Statistics
Matches: 120, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
81 120 1.00
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.27
Consensus pattern (81 bp):
GGCCTAACTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACAGTAAAATACCGT
TGAGTAAAAGAATAAT
Found at i:304678 original size:39 final size:39
Alignment explanation
Indices: 304604--304678 Score: 114
Period size: 39 Copynumber: 1.9 Consensus size: 39
304594 GGCCTAACTG
* * *
304604 TGCATTTGGCAGCAAGGTGTCAATTATGCCCGTTAGTTA
1 TGCATTTGGCAGAAAAGTGTCAATTATGCCAGTTAGTTA
*
304643 TGCATTTGGCAGAAAAGTGTCAATTATGTCAGTTAG
1 TGCATTTGGCAGAAAAGTGTCAATTATGCCAGTTAG
304679 ATGAACGGTT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 32 1.00
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (39 bp):
TGCATTTGGCAGAAAAGTGTCAATTATGCCAGTTAGTTA
Found at i:304738 original size:120 final size:120
Alignment explanation
Indices: 304523--304756 Score: 423
Period size: 120 Copynumber: 1.9 Consensus size: 120
304513 GGTCTAACTG
*
304523 TGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACAGTTAAATACCGTTGAGTAAAAG
1 TGCATTTGGCAGAAAAGTGTCAATTATGCCAGTTAGATGAACAGTTAAATACCGTTGAGTAAAAG
304588 AATAATGGCCTAACTGTGCATTTGGCAGCAAGGTGTCAATTATGCCCGTTAGTTA
66 AATAATGGCCTAACTGTGCATTTGGCAGCAAGGTGTCAATTATGCCCGTTAGTTA
* * *
304643 TGCATTTGGCAGAAAAGTGTCAATTATGTCAGTTAGATGAACGGTTAATTACCGTTGAGTAAAAG
1 TGCATTTGGCAGAAAAGTGTCAATTATGCCAGTTAGATGAACAGTTAAATACCGTTGAGTAAAAG
*
304708 AATAATGGCCTAACTGTGCATTTGGTAGCAAGGTGTCAATTATGCCCGT
66 AATAATGGCCTAACTGTGCATTTGGCAGCAAGGTGTCAATTATGCCCGT
304757 AGATGAACGG
Statistics
Matches: 109, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
120 109 1.00
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (120 bp):
TGCATTTGGCAGAAAAGTGTCAATTATGCCAGTTAGATGAACAGTTAAATACCGTTGAGTAAAAG
AATAATGGCCTAACTGTGCATTTGGCAGCAAGGTGTCAATTATGCCCGTTAGTTA
Found at i:304875 original size:81 final size:81
Alignment explanation
Indices: 304643--305031 Score: 573
Period size: 81 Copynumber: 4.8 Consensus size: 81
304633 CCGTTAGTTA
* * *
304643 TGCATTTGGCAGAAAAGTGTCAATTATGTCAGTTAGATGAACGGTTAATTACCGTTGAGTAAAAG
1 TGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAATACCGTTGAGTAAAAG
304708 AATAATGGCCTAACTG
66 AATAATGGCCTAACTG
* * *
304724 TGCATTTGGTAGCAAGGTGTCAATTATGCCCG-TAGATGAACGGTTAAATACCGTTGAGTAAAAG
1 TGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAATACCGTTGAGTAAAAG
* *
304788 AATAATGGTCTATCTG
66 AATAATGGCCTAACTG
* * * *
304804 TGCATTTGGCAGAAATGTTTCAATTATGCCAGTTAGATGAACGATTAAATACTGTTGAGTAAAAG
1 TGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAATACCGTTGAGTAAAAG
*
304869 AATAATGGCCTAACAG
66 AATAATGGCCTAACTG
* * * *
304885 TGCATTTGGCAGCAAGGTGTCAATTATGTCTGTTAGATGAACGGTTAAATAGCGTTGAGTAAAAG
1 TGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAATACCGTTGAGTAAAAG
*
304950 AATAATGACCTAACTG
66 AATAATGGCCTAACTG
* * * *
304966 TGCATTTGACATAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAACACTGTTGAGTAAAAG
1 TGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAATACCGTTGAGTAAAAG
305031 A
66 A
305032 TGAACGGTTA
Statistics
Matches: 271, Mismatches: 36, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
80 72 0.27
81 199 0.73
ACGTcount: A:0.34, C:0.13, G:0.23, T:0.30
Consensus pattern (81 bp):
TGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAATACCGTTGAGTAAAAG
AATAATGGCCTAACTG
Found at i:304904 original size:362 final size:353
Alignment explanation
Indices: 304439--305138 Score: 981
Period size: 362 Copynumber: 2.0 Consensus size: 353
304429 TGAGGCCTAA
*
304439 CTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTAAAATACCGTTGAGTAA
1 CTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAACGATAAAATACCGTTGAGTAA
* *
304504 AAGAATAATGGTCTAACTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACAGTT
66 AAGAATAATGGCCTAACAGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACAGTT
* * *
304569 AAATACCGTTGAGTAAAAGAATAATGGCCTAACTGTGCATTTGGCAGCAAGGTGTCAATTATGCC
131 AAATACCGTTGAGTAAAAGAATAATGACCTAACTGTGCATTTGACAGAAAGGTGTCAATTATGCC
* ** * * ** *
304634 CGTTAGTTATGCATTTGG-CAGAAAAGTGTCAATTATGTCAGTTAGATGAACGGTTAATTACCGT
196 AGTTAG--ATG-A-ACGGTCA-AAAACTGT---TGA-GT-A-AAAGATGAACGGTTAAATACCGT
* * * *
304698 TGAGTAAAAGAATAATGGCCTAACTGTGCATTTGGTAGCAAGGTGTCAATTATGCCCG-TAGATG
250 TGAGTAAAAGAATAATGGCCTAACTGTGCATTTAGCAGAAAGGTGTCAATTATGCCAGTTAGATG
*
304762 AACGGTTAAATACCGTTGAGTAAAAGAATAATGGTCTAT
315 AACGGTTAAACACCGTTGAGTAAAAGAATAATGGTCTAT
* * * * *
304801 CTGTGCATTTGGCAGAAATGTTTCAATTATGCCAGTTAGATGAACGATTAAATACTGTTGAGTAA
1 CTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAACGATAAAATACCGTTGAGTAA
* * * *
304866 AAGAATAATGGCCTAACAGTGCATTTGGCAGCAAGGTGTCAATTATGTCTGTTAGATGAACGGTT
66 AAGAATAATGGCCTAACAGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACAGTT
* *
304931 AAATAGCGTTGAGTAAAAGAATAATGACCTAACTGTGCATTTGACATAAAGGTGTCAATTATGCC
131 AAATACCGTTGAGTAAAAGAATAATGACCTAACTGTGCATTTGACAGAAAGGTGTCAATTATGCC
* *
304996 AGTTAGATGAACGGTTAAACACTGTTGAGTAAAAGATGAACGGTTAAATACCGTTGAGTAAAAGA
196 AGTTAGATGAACGGTCAAAAACTGTTGAGTAAAAGATGAACGGTTAAATACCGTTGAGTAAAAGA
*
305061 ATAATTGCCTAACTGTGCATTTAGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAAC
261 ATAATGGCCTAACTGTGCATTTAGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAAC
*
305126 ACTGTTGAGTAAA
326 ACCGTTGAGTAAA
305139 GGATTAACGG
Statistics
Matches: 302, Mismatches: 34, Indels: 13
0.87 0.10 0.04
Matches are distributed among these distances:
352 73 0.24
353 29 0.10
354 2 0.01
355 2 0.01
358 8 0.03
359 2 0.01
360 3 0.01
362 183 0.61
ACGTcount: A:0.34, C:0.13, G:0.23, T:0.29
Consensus pattern (353 bp):
CTGTGCATTTGACAGAAAGGTGTCAATTATGCCAGTTAGATGAACGATAAAATACCGTTGAGTAA
AAGAATAATGGCCTAACAGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACAGTT
AAATACCGTTGAGTAAAAGAATAATGACCTAACTGTGCATTTGACAGAAAGGTGTCAATTATGCC
AGTTAGATGAACGGTCAAAAACTGTTGAGTAAAAGATGAACGGTTAAATACCGTTGAGTAAAAGA
ATAATGGCCTAACTGTGCATTTAGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAAC
ACCGTTGAGTAAAAGAATAATGGTCTAT
Found at i:305042 original size:29 final size:29
Alignment explanation
Indices: 305000--305060 Score: 104
Period size: 29 Copynumber: 2.1 Consensus size: 29
304990 TATGCCAGTT
*
305000 AGATGAACGGTTAAACACTGTTGAGTAAA
1 AGATGAACGGTTAAACACCGTTGAGTAAA
*
305029 AGATGAACGGTTAAATACCGTTGAGTAAA
1 AGATGAACGGTTAAACACCGTTGAGTAAA
305058 AGA
1 AGA
305061 ATAATTGCCT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.43, C:0.10, G:0.25, T:0.23
Consensus pattern (29 bp):
AGATGAACGGTTAAACACCGTTGAGTAAA
Found at i:305112 original size:110 final size:111
Alignment explanation
Indices: 304919--305213 Score: 436
Period size: 110 Copynumber: 2.7 Consensus size: 111
304909 TATGTCTGTT
* *
304919 AGATGAACGGTTAAATAGCGTTGAGTAAAAGAATAA-TGACCTAACTGTGCATTTGACATAAAGG
1 AGATGAACGGTTAAATACCGTTGAGTAAAAGAATAATTGACCTAACTGTGCATTTGACAGAAAGG
304983 TGTCAATTATGCCAGTTAGATGAACGGTTAAACACTGTTGAGTAAA
66 TGTCAATTATGCCAGTTAGATGAACGGTTAAACACTGTTGAGTAAA
305029 AGATGAACGGTTAAATACCGTTGAGTAAAAGAATAATTG-CCTAACTGTGCATTT-AGCAGAAAG
1 AGATGAACGGTTAAATACCGTTGAGTAAAAGAATAATTGACCTAACTGTGCATTTGA-CAGAAAG
305092 GTGTCAATTATGCCAGTTAGATGAACGGTTAAACACTGTTGAGTAAA
65 GTGTCAATTATGCCAGTTAGATGAACGGTTAAACACTGTTGAGTAAA
* * * * * * ** * *
305139 GGATTAACGGTTAAACACTGTTGAGTAAAAGAATAATGGA-ATCGCTTTGCATTTGACAGAAAAG
1 AGATGAACGGTTAAATACCGTTGAGTAAAAGAATAATTGACCTAACTGTGCATTTGACAGAAAGG
*
305203 TGTCAAATATG
66 TGTCAATTATG
305214 TAAGTTAAAG
Statistics
Matches: 168, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
109 1 0.01
110 164 0.98
111 3 0.02
ACGTcount: A:0.38, C:0.12, G:0.23, T:0.27
Consensus pattern (111 bp):
AGATGAACGGTTAAATACCGTTGAGTAAAAGAATAATTGACCTAACTGTGCATTTGACAGAAAGG
TGTCAATTATGCCAGTTAGATGAACGGTTAAACACTGTTGAGTAAA
Found at i:309453 original size:61 final size:59
Alignment explanation
Indices: 309331--309453 Score: 138
Period size: 61 Copynumber: 2.1 Consensus size: 59
309321 TATTTGAATG
* * * * * ** *
309331 AATTTGGGGATGAAATTAGAATATTCAAAAGTTGAGGACTAATTTTGAATGAGGGTCAT
1 AATTTAGGAATGAAATTAGAATATTCAAAAGTTAAAGACCAATTTAAAATGAGAGTCAT
* *
309390 AATTTAGGAATGAAATTAGAATATTTTAAAAGTTTAAAGACCAATTTAAAATGAGAGTTAT
1 AATTTAGGAATGAAATTAGAATA-TTCAAAAG-TTAAAGACCAATTTAAAATGAGAGTCAT
309451 AAT
1 AAT
309454 ATAAGAGCAT
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
59 21 0.40
60 7 0.13
61 24 0.46
ACGTcount: A:0.43, C:0.04, G:0.20, T:0.33
Consensus pattern (59 bp):
AATTTAGGAATGAAATTAGAATATTCAAAAGTTAAAGACCAATTTAAAATGAGAGTCAT
Found at i:318207 original size:19 final size:20
Alignment explanation
Indices: 318170--318208 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
318160 CGTTATACAA
*
318170 GGGGGGAATCTGTACTCCCTT
1 GGGGGGAATCGGTA-TCCCTT
318191 GGGGGGAATCGGT-TCCCT
1 GGGGGGAATCGGTATCCCT
318209 CCGAGCATAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
21 12 0.71
ACGTcount: A:0.13, C:0.23, G:0.38, T:0.26
Consensus pattern (20 bp):
GGGGGGAATCGGTATCCCTT
Found at i:320750 original size:20 final size:20
Alignment explanation
Indices: 320713--320771 Score: 66
Period size: 20 Copynumber: 2.9 Consensus size: 20
320703 CAGAACCCTA
* *
320713 GGGGGTATCGATTCCC-CTGT
1 GGGGGGATCGATTCCCTC-AT
*
320733 GGGGGGAATCGGTTCCCTCAT
1 GGGGGG-ATCGATTCCCTCAT
320754 GGGGGGATCGATTCCCTC
1 GGGGGGATCGATTCCCTC
320772 TGCACCAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
20 16 0.48
21 16 0.48
22 1 0.03
ACGTcount: A:0.12, C:0.25, G:0.37, T:0.25
Consensus pattern (20 bp):
GGGGGGATCGATTCCCTCAT
Found at i:326613 original size:22 final size:22
Alignment explanation
Indices: 326587--326682 Score: 156
Period size: 22 Copynumber: 4.4 Consensus size: 22
326577 AAACCATTCA
* *
326587 GGGGGAATCGGTACCCCCATGG
1 GGGGGAATCGGTAACCCCTTGG
326609 GGGGGAATCGGTAACCCCTTGG
1 GGGGGAATCGGTAACCCCTTGG
* *
326631 GGGGGAATCGGTACCCCCTTAG
1 GGGGGAATCGGTAACCCCTTGG
326653 GGGGGAATCGGTAACCCCTTGG
1 GGGGGAATCGGTAACCCCTTGG
326675 GGGGGAAT
1 GGGGGAAT
326683 TGGTTCCCTC
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 68 1.00
ACGTcount: A:0.19, C:0.23, G:0.42, T:0.17
Consensus pattern (22 bp):
GGGGGAATCGGTAACCCCTTGG
Found at i:326648 original size:44 final size:44
Alignment explanation
Indices: 326587--326682 Score: 174
Period size: 44 Copynumber: 2.2 Consensus size: 44
326577 AAACCATTCA
*
326587 GGGGGAATCGGTACCCCCATGGGGGGGAATCGGTAACCCCTTGG
1 GGGGGAATCGGTACCCCCATAGGGGGGAATCGGTAACCCCTTGG
*
326631 GGGGGAATCGGTACCCCCTTAGGGGGGAATCGGTAACCCCTTGG
1 GGGGGAATCGGTACCCCCATAGGGGGGAATCGGTAACCCCTTGG
326675 GGGGGAAT
1 GGGGGAAT
326683 TGGTTCCCTC
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 50 1.00
ACGTcount: A:0.19, C:0.23, G:0.42, T:0.17
Consensus pattern (44 bp):
GGGGGAATCGGTACCCCCATAGGGGGGAATCGGTAACCCCTTGG
Found at i:327132 original size:20 final size:20
Alignment explanation
Indices: 327107--327159 Score: 97
Period size: 20 Copynumber: 2.6 Consensus size: 20
327097 CTTAGCTTAG
*
327107 GAGTATTAATACTGATATGA
1 GAGTATTGATACTGATATGA
327127 GAGTATTGATACTGATATGA
1 GAGTATTGATACTGATATGA
327147 GAGTATTGATACT
1 GAGTATTGATACT
327160 ACCCCTTTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.36, C:0.06, G:0.23, T:0.36
Consensus pattern (20 bp):
GAGTATTGATACTGATATGA
Found at i:327235 original size:20 final size:20
Alignment explanation
Indices: 327194--327240 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
327184 AGTAGTAGAT
*
327194 TACCGATACTCAAGGGTTAG
1 TACCGATACTCAAGGGTCAG
*
327214 TACCGATAC-CGAGAGGTCAG
1 TACCGATACTCAAG-GGTCAG
*
327234 TATCGAT
1 TACCGAT
327241 TTCAGTGTAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
19 3 0.13
20 20 0.87
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (20 bp):
TACCGATACTCAAGGGTCAG
Found at i:329151 original size:25 final size:26
Alignment explanation
Indices: 329123--329173 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
329113 AAATTTAATG
*
329123 TCAATTA-GGTTGAAAATCATTTTTT
1 TCAATTACGGTTGAAAATCAATTTTT
**
329148 TCAATTACGGTTTTAAATCAATTTTT
1 TCAATTACGGTTGAAAATCAATTTTT
329174 GAGTGTTTGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 7 0.32
26 15 0.68
ACGTcount: A:0.31, C:0.10, G:0.10, T:0.49
Consensus pattern (26 bp):
TCAATTACGGTTGAAAATCAATTTTT
Found at i:330376 original size:32 final size:31
Alignment explanation
Indices: 330340--330465 Score: 83
Period size: 32 Copynumber: 3.9 Consensus size: 31
330330 GAACTGAAAA
*
330340 TAACCTAAATTGAAAGCAATCTGAACCGAATT
1 TAACCTAAATCGAAAGCAA-CTGAACCGAATT
* * * *
330372 TAACCCAAACCGAAAGTAACTCGAACCAAATT
1 TAACCTAAATCGAAAGCAACT-GAACCGAATT
* * ** *
330404 TAACC-CAATCTGAAAGTAACACAAACCGAAAT
1 TAACCTAAATC-GAAAGCAAC-TGAACCGAATT
* * *
330436 TAATCTGAATCGAAAGCAATCTGAATCGAA
1 TAACCTAAATCGAAAGCAA-CTGAACCGAA
330466 AATCTATATA
Statistics
Matches: 72, Mismatches: 17, Indels: 10
0.73 0.17 0.10
Matches are distributed among these distances:
31 5 0.07
32 62 0.86
33 5 0.07
ACGTcount: A:0.46, C:0.22, G:0.12, T:0.20
Consensus pattern (31 bp):
TAACCTAAATCGAAAGCAACTGAACCGAATT
Found at i:330384 original size:16 final size:16
Alignment explanation
Indices: 330363--330411 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 16
330353 AAGCAATCTG
330363 AACCGAATTTAACCCA
1 AACCGAATTTAACCCA
** * *
330379 AACCGAAAGTAACTCG
1 AACCGAATTTAACCCA
*
330395 AACCAAATTTAACCCA
1 AACCGAATTTAACCCA
330411 A
1 A
330412 TCTGAAAGTA
Statistics
Matches: 24, Mismatches: 9, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.47, C:0.29, G:0.08, T:0.16
Consensus pattern (16 bp):
AACCGAATTTAACCCA
Found at i:330434 original size:16 final size:16
Alignment explanation
Indices: 330372--330434 Score: 56
Period size: 16 Copynumber: 3.9 Consensus size: 16
330362 GAACCGAATT
330372 TAACCCAAACCGAAAG
1 TAACCCAAACCGAAAG
* * *
330388 TAACTCGAACC-AAATT
1 TAACCCAAACCGAAA-G
* *
330404 TAACCCAATCTGAAAG
1 TAACCCAAACCGAAAG
*
330420 TAACACAAACCGAAA
1 TAACCCAAACCGAAA
330435 TTAATCTGAA
Statistics
Matches: 34, Mismatches: 11, Indels: 4
0.69 0.22 0.08
Matches are distributed among these distances:
15 3 0.09
16 28 0.82
17 3 0.09
ACGTcount: A:0.49, C:0.27, G:0.10, T:0.14
Consensus pattern (16 bp):
TAACCCAAACCGAAAG
Found at i:330656 original size:32 final size:32
Alignment explanation
Indices: 330620--330688 Score: 75
Period size: 32 Copynumber: 2.2 Consensus size: 32
330610 GATCTAAAGG
* *
330620 TTGACTCAAATAGAAAATCAACCAATTTGATA
1 TTGACACAAATAGAAAATCAACCAATTCGATA
* * ** *
330652 TTGACACGATTCTAAAATCAACCGATTCGATA
1 TTGACACAAATAGAAAATCAACCAATTCGATA
330684 TTGAC
1 TTGAC
330689 CCGACCCAAA
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.41, C:0.19, G:0.12, T:0.29
Consensus pattern (32 bp):
TTGACACAAATAGAAAATCAACCAATTCGATA
Found at i:330705 original size:32 final size:32
Alignment explanation
Indices: 330633--330719 Score: 113
Period size: 32 Copynumber: 2.7 Consensus size: 32
330623 ACTCAAATAG
* * * *
330633 AAAATCAACCAATTTGATATTGACACGATTCT
1 AAAATCAACCGATTCGATATTGACACGATCCC
*
330665 AAAATCAACCGATTCGATATTGACCCGA-CCC
1 AAAATCAACCGATTCGATATTGACACGATCCC
330696 AAAAGTCAACCGATTCGATATTGA
1 AAAA-TCAACCGATTCGATATTGA
330720 TCCAAACAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
31 5 0.10
32 44 0.90
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.25
Consensus pattern (32 bp):
AAAATCAACCGATTCGATATTGACACGATCCC
Found at i:332071 original size:27 final size:26
Alignment explanation
Indices: 332024--332085 Score: 99
Period size: 27 Copynumber: 2.4 Consensus size: 26
332014 TTTATAATAA
*
332024 ATTTTATTA-TTTTTTTGAAAAAATT
1 ATTTTATTATTTTTTTTGAAAAAAAT
332049 ATTTTATTATTTTTTTTGAAAAAAAAT
1 ATTTTATTATTTTTTTTG-AAAAAAAT
332076 ATTTTATTAT
1 ATTTTATTAT
332086 ATTTAAAGAA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
25 9 0.26
26 8 0.24
27 17 0.50
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (26 bp):
ATTTTATTATTTTTTTTGAAAAAAAT
Found at i:332096 original size:27 final size:27
Alignment explanation
Indices: 332041--332097 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
332031 TATTTTTTTG
* * ***
332041 AAAAAATTATTTTATTATTTTTTTTGA
1 AAAAAAATATTTTATTATATTTAAAGA
332068 AAAAAAATATTTTATTATATTTAAAGA
1 AAAAAAATATTTTATTATATTTAAAGA
332095 AAA
1 AAA
332098 CTTTTTTTTG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (27 bp):
AAAAAAATATTTTATTATATTTAAAGA
Found at i:334110 original size:14 final size:15
Alignment explanation
Indices: 334079--334111 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
334069 TCTATTTTCA
*
334079 TTATTTTCTACTTTT
1 TTATTTTCTACATTT
334094 TTATTTTCT-CATTT
1 TTATTTTCTACATTT
334108 TTAT
1 TTAT
334112 AAATTATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.15, C:0.12, G:0.00, T:0.73
Consensus pattern (15 bp):
TTATTTTCTACATTT
Found at i:334262 original size:73 final size:73
Alignment explanation
Indices: 334171--334320 Score: 300
Period size: 73 Copynumber: 2.1 Consensus size: 73
334161 GCACGAGTTG
334171 AATGACATTCAATGGTAAAGGAATTGTTGTTATTTCTTGAGGTCCTGAGTTCGTGTCATGGGTAT
1 AATGACATTCAATGGTAAAGGAATTGTTGTTATTTCTTGAGGTCCTGAGTTCGTGTCATGGGTAT
334236 GAGCGTTT
66 GAGCGTTT
334244 AATGACATTCAATGGTAAAGGAATTGTTGTTATTTCTTGAGGTCCTGAGTTCGTGTCATGGGTAT
1 AATGACATTCAATGGTAAAGGAATTGTTGTTATTTCTTGAGGTCCTGAGTTCGTGTCATGGGTAT
334309 GAGCGTTT
66 GAGCGTTT
334317 AATG
1 AATG
334321 TCAAATGATT
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 77 1.00
ACGTcount: A:0.24, C:0.11, G:0.27, T:0.38
Consensus pattern (73 bp):
AATGACATTCAATGGTAAAGGAATTGTTGTTATTTCTTGAGGTCCTGAGTTCGTGTCATGGGTAT
GAGCGTTT
Found at i:351047 original size:24 final size:24
Alignment explanation
Indices: 351014--351074 Score: 104
Period size: 24 Copynumber: 2.5 Consensus size: 24
351004 ACCTAGGTAG
351014 TGTACCGATACCCCAATTAAGGGA
1 TGTACCGATACCCCAATTAAGGGA
* *
351038 TGTACTGATACCCCAGTTAAGGGA
1 TGTACCGATACCCCAATTAAGGGA
351062 TGTACCGATACCC
1 TGTACCGATACCC
351075 TATAGCGGGT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (24 bp):
TGTACCGATACCCCAATTAAGGGA
Found at i:354279 original size:17 final size:17
Alignment explanation
Indices: 354259--354305 Score: 69
Period size: 17 Copynumber: 2.8 Consensus size: 17
354249 ATAGTATAAC
354259 AAAAGATACAATACAAT
1 AAAAGATACAATACAAT
*
354276 AAAAGATATAGA-ACAAT
1 AAAAGATACA-ATACAAT
354293 AAAAGATACAATA
1 AAAAGATACAATA
354306 AGAGAAATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
16 1 0.04
17 24 0.92
18 1 0.04
ACGTcount: A:0.66, C:0.09, G:0.09, T:0.17
Consensus pattern (17 bp):
AAAAGATACAATACAAT
Found at i:354285 original size:34 final size:34
Alignment explanation
Indices: 354241--354305 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 34
354231 AAAATAAAAG
* * *
354241 TAAAATATATAGTATAACAAAAGATACAATACAA
1 TAAAAGATATAGAACAACAAAAGATACAATACAA
*
354275 TAAAAGATATAGAACAATAAAAGATACAATA
1 TAAAAGATATAGAACAACAAAAGATACAATA
354306 AGAGAAATAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.63, C:0.08, G:0.08, T:0.22
Consensus pattern (34 bp):
TAAAAGATATAGAACAACAAAAGATACAATACAA
Found at i:360648 original size:54 final size:54
Alignment explanation
Indices: 359977--360640 Score: 892
Period size: 54 Copynumber: 12.4 Consensus size: 54
359967 TAGATAAGTG
* *
359977 ATAATGAGTTTGTGAATTACCGTATCGGCACTAAG-GATGCAACTCATGGAATTC
1 ATAATGAGTTTGTGAATTACCGTATCGACACTAAGTG-TGCAACTCACGGAATTC
* *
360031 ATAATGAGTTTGTGAATTACCATATC-AGTACTAAGTGTGCAACTCACGGAATTC
1 ATAATGAGTTTGTGAATTACCGTATCGA-CACTAAGTGTGCAACTCACGGAATTC
* * *
360085 ATAATGAGTTTGTGAATAACCGTATCGGCACTAAGGGTGCAACTCACGGAA--C
1 ATAATGAGTTTGTGAATTACCGTATCGACACTAAGTGTGCAACTCACGGAATTC
* * * * * * * *
360137 -TCATGAGTTTGTGAATTACCGTATC-AGTAGTATGTGTTCAACCCATGAAATTC
1 ATAATGAGTTTGTGAATTACCGTATCGA-CACTAAGTGTGCAACTCACGGAATTC
* **
360190 ATAATGAGTTTGTGAATTACCATATCGACACTAAGTGAACAACTCACGGAATTC
1 ATAATGAGTTTGTGAATTACCGTATCGACACTAAGTGTGCAACTCACGGAATTC
*
360244 ACAATGAGTTTGTGAATTACCGTATCGACACTAAGTGTGCAACTCACGGAATTC
1 ATAATGAGTTTGTGAATTACCGTATCGACACTAAGTGTGCAACTCACGGAATTC
*
360298 ATAATGAGTTTGTGAATTACCGTATCGACACTAAGTGTGCAACTCACGAAATTC
1 ATAATGAGTTTGTGAATTACCGTATCGACACTAAGTGTGCAACTCACGGAATTC
* ** * *
360352 ATAATGGGTTTGTGAATTACCACATCGACACTAAATGTGCAACTCACAGAATTC
1 ATAATGAGTTTGTGAATTACCGTATCGACACTAAGTGTGCAACTCACGGAATTC
* * *
360406 ATAATGAGATTGTGAATGACCGTATC-AGCACTAAGTGTGCAACCCACGGAATTC
1 ATAATGAGTTTGTGAATTACCGTATCGA-CACTAAGTGTGCAACTCACGGAATTC
* * *
360460 ATAATGAGTTTGTGAATTACCGTATCGGCACTAAGTGTGCAACCCACGAAATTC
1 ATAATGAGTTTGTGAATTACCGTATCGACACTAAGTGTGCAACTCACGGAATTC
* *
360514 ATAATGAGTTTGTGAATTACCGTATCGACACTAATTGTGCAACTCATGGAATTC
1 ATAATGAGTTTGTGAATTACCGTATCGACACTAAGTGTGCAACTCACGGAATTC
* * * * *
360568 ATAATGAGTTTGTGAATTATCGTATCGACACTATGTGAGCAACCCATGGAATTC
1 ATAATGAGTTTGTGAATTACCGTATCGACACTAAGTGTGCAACTCACGGAATTC
*
360622 ATAAGGAGTTTGTGAATTA
1 ATAATGAGTTTGTGAATTA
360641 TCATATCGGC
Statistics
Matches: 535, Mismatches: 65, Indels: 20
0.86 0.10 0.03
Matches are distributed among these distances:
51 38 0.07
52 1 0.00
53 2 0.00
54 492 0.92
55 2 0.00
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (54 bp):
ATAATGAGTTTGTGAATTACCGTATCGACACTAAGTGTGCAACTCACGGAATTC
Found at i:365976 original size:54 final size:54
Alignment explanation
Indices: 365913--366699 Score: 954
Period size: 54 Copynumber: 14.6 Consensus size: 54
365903 TAGATAAGTG
* *
365913 ATAATGAGTTTGTGAATTACCGTATCGGCACTAAGTTTACAACTCATGAAATTC
1 ATAATGAGTTTGTGAATTACCGTATCGGCACTAAGTGTGCAACTCATGAAATTC
* *
365967 ATAATGAGTTTGTGAATTACTGTATCGGCACTAAGTGTGCAACTCAAGAAATTC
1 ATAATGAGTTTGTGAATTACCGTATCGGCACTAAGTGTGCAACTCATGAAATTC
* * *
366021 ATAATGAGTTTGTG-ATTACCATATTGGCACTAAGTGTGCAACTCATGGAATTC
1 ATAATGAGTTTGTGAATTACCGTATCGGCACTAAGTGTGCAACTCATGAAATTC
* ** * * * *
366074 ATAATGAGTTTGTGAAGTACCGTATCAACACTATGTGTGCAACCCACGGAATTC
1 ATAATGAGTTTGTGAATTACCGTATCGGCACTAAGTGTGCAACTCATGAAATTC
* *
366128 ATAATGAGTTTGTGAATTACCGTATCGGCACTAAGTATGCAACTCA-CAGAATTC
1 ATAATGAGTTTGTGAATTACCGTATCGGCACTAAGTGTGCAACTCATGA-AATTC
* * * * * *
366182 ATAATGAGTTTGTTAATTACCTTATCGACACTAAGTGTGTAACTCACGGAATTC
1 ATAATGAGTTTGTGAATTACCGTATCGGCACTAAGTGTGCAACTCATGAAATTC
* * * * *
366236 ATATTGAGTTTGTGACTTACCATATCGGCACTAAGTGTGCAACTCACGGAATTC
1 ATAATGAGTTTGTGAATTACCGTATCGGCACTAAGTGTGCAACTCATGAAATTC
* ** *
366290 ATAATGAGTTTGTGAATTACAGTATCAACACTAAGTGTGCAACTCATGAAATTA
1 ATAATGAGTTTGTGAATTACCGTATCGGCACTAAGTGTGCAACTCATGAAATTC
* *
366344 ATAATGAGTTTGTGAATTA-CGATATCGACACTAAGTGTGCAACTCA-CAGAATTC
1 ATAATGAGTTTGTGAATTACCG-TATCGGCACTAAGTGTGCAACTCATGA-AATTC
* * **
366398 ATAATGAGTTTGTGAATTACCGTATCGGCTCTAAGTGTGCAACCCAACAAATTC
1 ATAATGAGTTTGTGAATTACCGTATCGGCACTAAGTGTGCAACTCATGAAATTC
* * * *
366452 ATAATGAGTTTGTGAATTACAGTGTCGACACTATGTGTGCAA-TCCATGAAATTC
1 ATAATGAGTTTGTGAATTACCGTATCGGCACTAAGTGTGCAACT-CATGAAATTC
** *** *
366506 ATAATGAGTTTGTGAATTACAATATCAATACTAAGTGTGCAACTCACGAAATTC
1 ATAATGAGTTTGTGAATTACCGTATCGGCACTAAGTGTGCAACTCATGAAATTC
* * * *
366560 ATAATGAGTTTGTGAATTATCGTATCGGCACTATGTGTGCAACCCATGGAATTC
1 ATAATGAGTTTGTGAATTACCGTATCGGCACTAAGTGTGCAACTCATGAAATTC
* * * * * *
366614 ATAATGTGTTTGTGAATTACCATATCGACACTATGTGTGTAACCCATGAAATTC
1 ATAATGAGTTTGTGAATTACCGTATCGGCACTAAGTGTGCAACTCATGAAATTC
* * * *
366668 ATAATGTGTTTGTGAATTTCCATATTGGCACT
1 ATAATGAGTTTGTGAATTACCGTATCGGCACT
366700 TAGGTGCGAT
Statistics
Matches: 637, Mismatches: 87, Indels: 18
0.86 0.12 0.02
Matches are distributed among these distances:
53 50 0.08
54 582 0.91
55 5 0.01
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Consensus pattern (54 bp):
ATAATGAGTTTGTGAATTACCGTATCGGCACTAAGTGTGCAACTCATGAAATTC
Found at i:368918 original size:22 final size:21
Alignment explanation
Indices: 368893--368959 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 21
368883 TGATAATATA
368893 TATTTTTTTATTTTAATTTGTT
1 TATTTTTTTATTTTAATTT-TT
368915 TA----TTTA-TTTAATTTTTT
1 TATTTTTTTATTTTAA-TTTTT
368932 TAGTTTTTTTATTTAGTAATTTTT
1 TA-TTTTTTTATTT--TAATTTTT
368956 TATT
1 TATT
368960 AGAATATTTA
Statistics
Matches: 36, Mismatches: 0, Indels: 17
0.68 0.00 0.32
Matches are distributed among these distances:
17 9 0.25
18 7 0.19
22 6 0.17
23 4 0.11
24 7 0.19
25 3 0.08
ACGTcount: A:0.21, C:0.00, G:0.04, T:0.75
Consensus pattern (21 bp):
TATTTTTTTATTTTAATTTTT
Found at i:368922 original size:18 final size:19
Alignment explanation
Indices: 368899--368942 Score: 58
Period size: 17 Copynumber: 2.5 Consensus size: 19
368889 TATATATTTT
368899 TTTATTTTAATTTGTTTA-
1 TTTATTTTAATTTGTTTAG
*
368917 TTTA-TTTAATTTTTTTAG
1 TTTATTTTAATTTGTTTAG
368935 TTT-TTTTA
1 TTTATTTTA
368943 TTTAGTAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
17 12 0.52
18 11 0.48
ACGTcount: A:0.20, C:0.00, G:0.05, T:0.75
Consensus pattern (19 bp):
TTTATTTTAATTTGTTTAG
Found at i:368932 original size:26 final size:25
Alignment explanation
Indices: 368903--368956 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 25
368893 TATTTTTTTA
*
368903 TTTTAATTTGTTTATTTATTTAATTT
1 TTTTAATTTGTTTATTTA-GTAATTT
* *
368929 TTTTAGTTTTTTTATTTAGTAATTT
1 TTTTAATTTGTTTATTTAGTAATTT
368954 TTT
1 TTT
368957 ATTAGAATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
25 9 0.36
26 16 0.64
ACGTcount: A:0.20, C:0.00, G:0.06, T:0.74
Consensus pattern (25 bp):
TTTTAATTTGTTTATTTAGTAATTT
Found at i:371328 original size:21 final size:21
Alignment explanation
Indices: 371302--371341 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
371292 ACCTTTTACA
*
371302 TTGCATTTTACATTTGCATCT
1 TTGCATTTTACATTGGCATCT
371323 TTGCATTTTACATTGGCAT
1 TTGCATTTTACATTGGCAT
371342 TTGTATTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.17, G:0.12, T:0.50
Consensus pattern (21 bp):
TTGCATTTTACATTGGCATCT
Found at i:373283 original size:2 final size:2
Alignment explanation
Indices: 373276--373326 Score: 95
Period size: 2 Copynumber: 26.0 Consensus size: 2
373266 ATTGCATAAG
373276 AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
373317 AT AT AT AT AT
1 AT AT AT AT AT
373327 TCATATGATT
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 47 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:373714 original size:23 final size:23
Alignment explanation
Indices: 373681--373748 Score: 91
Period size: 23 Copynumber: 3.0 Consensus size: 23
373671 CATATTATAT
373681 GGCACTTCGGTGCATTTCTACGC
1 GGCACTTCGGTGCATTTCTACGC
* * * *
373704 GGCACTACGGTGTAATTCTACGT
1 GGCACTTCGGTGCATTTCTACGC
*
373727 GGCACTTCGGTGCATTTATACG
1 GGCACTTCGGTGCATTTCTACG
373749 AGCTGTGGTG
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.18, C:0.25, G:0.26, T:0.31
Consensus pattern (23 bp):
GGCACTTCGGTGCATTTCTACGC
Found at i:373889 original size:16 final size:16
Alignment explanation
Indices: 373870--373900 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
373860 CTTGTTTTTC
373870 TATGTGAAATGTAATA
1 TATGTGAAATGTAATA
*
373886 TATGTGATATGTAAT
1 TATGTGAAATGTAAT
373901 GTCGAATATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.00, G:0.19, T:0.42
Consensus pattern (16 bp):
TATGTGAAATGTAATA
Found at i:377491 original size:2 final size:2
Alignment explanation
Indices: 377452--377480 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
377442 GGTGCTACAT
377452 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
377481 TGTGGTATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:398274 original size:43 final size:41
Alignment explanation
Indices: 398180--398343 Score: 121
Period size: 43 Copynumber: 3.9 Consensus size: 41
398170 ACAAAAAATT
*** * * * *
398180 CCGCAATAGGTAACGATATATAGCGATGTTTGTTCAACAAACG
1 CCGCAATAGGTGTTGATATTTAGCGACGTTT-TTCTA-AAACA
*
398223 CCACAATAGGTGTTGATATTTAGCGACGTTTGTTCTATAAACA
1 CCGCAATAGGTGTTGATATTTAGCGACGTTT-TTCTA-AAACA
* * ** * * * *
398266 CCGTAATAGGTGTTAAGGTTTAGCGGCGTTTTCCCCAAAAAA
1 CCGCAATAGGTGTTGATATTTAGCGACGTTTT-TCTAAAACA
*
398308 GTCGCAATAGGTGTTGATATTTAGCGACGTTTTTCT
1 -CCGCAATAGGTGTTGATATTTAGCGACGTTTTTCT
398344 CACAAACGCC
Statistics
Matches: 93, Mismatches: 26, Indels: 5
0.75 0.21 0.04
Matches are distributed among these distances:
42 6 0.06
43 87 0.94
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (41 bp):
CCGCAATAGGTGTTGATATTTAGCGACGTTTTTCTAAAACA
Found at i:398570 original size:44 final size:44
Alignment explanation
Indices: 398508--398665 Score: 142
Period size: 44 Copynumber: 3.6 Consensus size: 44
398498 TCGCGGTATT
* * *
398508 TTTTTTGGATACAAACGCCGCTAAAGGTCTGGTATATAGCGGCA
1 TTTTTAGGATACAAACGCCGCTAAAAGTATGGTATATAGCGGCA
* * *
398552 TTTTTAGGATACAAACGCCGTTAAAAGTGTGGTATATAGCAAGG-T
1 TTTTTAGGATACAAACGCCGCTAAAAGTATGGTATATAGC--GGCA
* * * * *
398597 TTTTTACGATACAAACGCCAC-AAAATGTATGGTATATATCGACG
1 TTTTTAGGATACAAACGCCGCTAAAA-GTATGGTATATAGCGGCA
* * *
398641 TTTTT-TGTTACAAACGCCGCCAAAA
1 TTTTTAGGATACAAACGCCGCTAAAA
398666 AACACAGAAC
Statistics
Matches: 94, Mismatches: 15, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
43 13 0.14
44 49 0.52
45 30 0.32
46 2 0.02
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.30
Consensus pattern (44 bp):
TTTTTAGGATACAAACGCCGCTAAAAGTATGGTATATAGCGGCA
Found at i:405113 original size:18 final size:18
Alignment explanation
Indices: 405090--405133 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
405080 AAATCAATAT
405090 CAATACAAAATAAGACAA
1 CAATACAAAATAAGACAA
*
405108 CAATACAAAATAAGACTA
1 CAATACAAAATAAGACAA
405126 CAA-ACAAA
1 CAATACAAA
405134 CTAAACCACT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
17 5 0.20
18 20 0.80
ACGTcount: A:0.66, C:0.18, G:0.05, T:0.11
Consensus pattern (18 bp):
CAATACAAAATAAGACAA
Found at i:405504 original size:39 final size:39
Alignment explanation
Indices: 405445--405528 Score: 141
Period size: 39 Copynumber: 2.2 Consensus size: 39
405435 ACATTATTAC
*
405445 CAATTGATTTTATTTATTATTAAGTTCAATATAATACCT
1 CAATAGATTTTATTTATTATTAAGTTCAATATAATACCT
* *
405484 CAATAGATTTTATTTATTATTAAGTTTAATATAGTACCT
1 CAATAGATTTTATTTATTATTAAGTTCAATATAATACCT
405523 CAATAG
1 CAATAG
405529 TTTCTTCTTG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.37, C:0.10, G:0.07, T:0.46
Consensus pattern (39 bp):
CAATAGATTTTATTTATTATTAAGTTCAATATAATACCT
Found at i:406798 original size:22 final size:23
Alignment explanation
Indices: 406751--406798 Score: 64
Period size: 22 Copynumber: 2.1 Consensus size: 23
406741 TCACGTTTTC
*
406751 AAAAGCTATTATTTTCCTATTTG
1 AAAAGCTATTATTTTCCTATTCG
406774 AAAA-CTATTATTTTTCC-ATTCG
1 AAAAGCTATTA-TTTTCCTATTCG
406796 AAA
1 AAA
406799 GAAGAAAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 13 0.57
23 10 0.43
ACGTcount: A:0.35, C:0.15, G:0.06, T:0.44
Consensus pattern (23 bp):
AAAAGCTATTATTTTCCTATTCG
Found at i:407545 original size:41 final size:41
Alignment explanation
Indices: 407467--407545 Score: 104
Period size: 41 Copynumber: 1.9 Consensus size: 41
407457 ATACAAACAT
* * * *
407467 CGCTAAATTACTATTATATTGTGACGTTTTTTGAAAAACTC
1 CGCTAAATTACTATTATATTGCGACATTTGTTAAAAAACTC
* *
407508 CGCTAAATTACTATTATTTTGCGGCATTTGTTAAAAAA
1 CGCTAAATTACTATTATATTGCGACATTTGTTAAAAAA
407546 AGCCACTATA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 32 1.00
ACGTcount: A:0.33, C:0.14, G:0.13, T:0.41
Consensus pattern (41 bp):
CGCTAAATTACTATTATATTGCGACATTTGTTAAAAAACTC
Found at i:408034 original size:3 final size:3
Alignment explanation
Indices: 408026--408065 Score: 55
Period size: 3 Copynumber: 13.7 Consensus size: 3
408016 CTAAATTTTA
* *
408026 ATT ATT ATT ATT ACT A-T ATT ATT ATT ATT ATT AAT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
408066 CATTCCATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
2 2 0.06
3 31 0.94
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:411703 original size:21 final size:21
Alignment explanation
Indices: 411669--411719 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
411659 CATCAGCAAC
*
411669 TGTGAACTATCACGCTAGTGA
1 TGTGAACTAACACGCTAGTGA
* *
411690 TGTGAGCTAACACGTTAGT-A
1 TGTGAACTAACACGCTAGTGA
411710 TCGTGAACTA
1 T-GTGAACTA
411720 CCATATCAAC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
20 2 0.08
21 23 0.92
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (21 bp):
TGTGAACTAACACGCTAGTGA
Found at i:416110 original size:20 final size:20
Alignment explanation
Indices: 416049--416127 Score: 97
Period size: 21 Copynumber: 3.9 Consensus size: 20
416039 TTTTTTTGCT
* *
416049 CAAAGGATCGATCCC-CTAT
1 CAAAGGATCGATCCCTTTAC
*
416068 CAAAAGATCGATCCCTTTGAC
1 CAAAGGATCGATCCCTTT-AC
416089 CAAAGGATCGATCCCTTTAC
1 CAAAGGATCGATCCCTTTAC
*
416109 CAAAATGATCGATCCCTTT
1 C-AAAGGATCGATCCCTTT
416128 GTTCCAACAA
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
19 14 0.27
20 4 0.08
21 34 0.65
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.25
Consensus pattern (20 bp):
CAAAGGATCGATCCCTTTAC
Found at i:416142 original size:42 final size:39
Alignment explanation
Indices: 416049--416128 Score: 106
Period size: 40 Copynumber: 1.9 Consensus size: 39
416039 TTTTTTTGCT
*
416049 CAAAGGATCGATCCCCTATCAAAAGATCGATCCCTTTGAC
1 CAAA-GATCGATCCCCTACCAAAAGATCGATCCCTTTGAC
*
416089 CAAAGGATCGATCCCTTTACCAAAATGATCGATCCCTTTG
1 CAAA-GATCGATCCC-CTACCAAAA-GATCGATCCCTTTG
416129 TTCCAACAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
40 15 0.42
41 7 0.19
42 14 0.39
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (39 bp):
CAAAGATCGATCCCCTACCAAAAGATCGATCCCTTTGAC
Found at i:421532 original size:22 final size:22
Alignment explanation
Indices: 421507--421550 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
421497 AAATATTTAT
421507 TTAAGCT-TAAATTAACATGAAA
1 TTAAGCTATAAATT-ACATGAAA
*
421529 TTAAGCTATAAATTTCATGAAA
1 TTAAGCTATAAATTACATGAAA
421551 CATGGCTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 14 0.70
23 6 0.30
ACGTcount: A:0.48, C:0.09, G:0.09, T:0.34
Consensus pattern (22 bp):
TTAAGCTATAAATTACATGAAA
Found at i:422450 original size:18 final size:18
Alignment explanation
Indices: 422427--422461 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
422417 AGGGCCCAAT
422427 ATGAATTAAAAGGAAAAA
1 ATGAATTAAAAGGAAAAA
422445 ATGAATTAAAAGGAAAA
1 ATGAATTAAAAGGAAAA
422462 GTTAGGATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.66, C:0.00, G:0.17, T:0.17
Consensus pattern (18 bp):
ATGAATTAAAAGGAAAAA
Found at i:423128 original size:21 final size:21
Alignment explanation
Indices: 423074--423131 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
423064 TTTTCCTATG
423074 AGTACTTTGTGTACTAGGAGT
1 AGTACTTTGTGTACTAGGAGT
* * *
423095 AGTA-TTTCATGTACTTGTAGT
1 AGTACTTT-GTGTACTAGGAGT
423116 AGTACTTTGTGTACTA
1 AGTACTTTGTGTACTA
423132 TGGTACTATT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
20 3 0.10
21 24 0.80
22 3 0.10
ACGTcount: A:0.24, C:0.10, G:0.22, T:0.43
Consensus pattern (21 bp):
AGTACTTTGTGTACTAGGAGT
Found at i:428811 original size:23 final size:22
Alignment explanation
Indices: 428784--428827 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
428774 CATAAGGTAA
428784 GAGAAAATTTCATTTT-GATTTTT
1 GAGAAAA-TTC-TTTTGGATTTTT
428807 GAGAAAATTCTTTTGGATTTT
1 GAGAAAATTCTTTTGGATTTT
428828 GGATTATGTC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 4 0.20
22 9 0.45
23 7 0.35
ACGTcount: A:0.30, C:0.05, G:0.16, T:0.50
Consensus pattern (22 bp):
GAGAAAATTCTTTTGGATTTTT
Found at i:443212 original size:110 final size:110
Alignment explanation
Indices: 443010--443212 Score: 235
Period size: 110 Copynumber: 1.8 Consensus size: 110
443000 AAAGGTACTC
* * * * * **
443010 AACCATTCATCTAACTTGCATATTTGACACTTTTCTATCAAATGTACCACTAATTCATTATTCTT
1 AACCATTCATCTAACTGGCATAATTGACACATTTCTATCAAATGCACAACTAAGCCATTATTCTT
* * * ** * *
443075 TTATTTAATAGTGTTTTACCGTACATCTTATACTCAACAATATTT
66 TTACTCAACAGTACTTAACCATACATCTTATACTCAACAATATTT
* * * *
443120 AACCGTTCATTTAACTGGCATAATTGACACATTTCTATCAAATGCACAACTAGGCCATTATTGTT
1 AACCATTCATCTAACTGGCATAATTGACACATTTCTATCAAATGCACAACTAAGCCATTATTCTT
*
443185 TTACTCAACAGTACTTAACCATTCATCT
66 TTACTCAACAGTACTTAACCATACATCT
443213 AACTGCCAGA
Statistics
Matches: 74, Mismatches: 19, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
110 74 1.00
ACGTcount: A:0.32, C:0.22, G:0.07, T:0.39
Consensus pattern (110 bp):
AACCATTCATCTAACTGGCATAATTGACACATTTCTATCAAATGCACAACTAAGCCATTATTCTT
TTACTCAACAGTACTTAACCATACATCTTATACTCAACAATATTT
Found at i:443492 original size:81 final size:81
Alignment explanation
Indices: 443100--443499 Score: 548
Period size: 81 Copynumber: 4.9 Consensus size: 81
443090 TTACCGTACA
* ** * * * *
443100 TCTTATACTCAACAATATTTAACCGTTCATTTAACTGGCATAATTGACACATTTCTATCAAATGC
1 TCTTTTACTCAACGGTACTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGC
*
443165 ACAACTAGGCCATTAT
66 ACAGCTAGGCCATTAT
* * * * * * *
443181 TGTTTTACTCAACAGTACTTAACCATTCATCTAACTGCCAGAATTGACACCATTATGTCAAATGC
1 TCTTTTACTCAACGGTACTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGC
*
443246 ACAACTAGGCCATTAT
66 ACAGCTAGGCCATTAT
* * * *
443262 TCTTTTAGTCAACGGTACTTAACTGTTCATCTAACTGGCATAATTGATACCTTTTTGTCAAATGC
1 TCTTTTACTCAACGGTACTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGC
*
443327 ACAGCTAAGCCATTAT
66 ACAGCTAGGCCATTAT
* * *
443343 TCTTTTATTCAACGGTACTTAACCGTTCATCTAAGTGGCATAATTGACACATTTCTGTCAAATGC
1 TCTTTTACTCAACGGTACTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGC
*
443408 ACAGCTAGGTCATTAT
66 ACAGCTAGGCCATTAT
* *
443424 TCTTTTACTCAACGGTACTTAACCGTTCATCTAACTGGAATAATTGAAACCTTTCTGTCAAATGC
1 TCTTTTACTCAACGGTACTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGC
*
443489 ACAGTTAGGCC
66 ACAGCTAGGCC
443500 TCAAAGGCAC
Statistics
Matches: 280, Mismatches: 39, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 280 1.00
ACGTcount: A:0.31, C:0.23, G:0.12, T:0.34
Consensus pattern (81 bp):
TCTTTTACTCAACGGTACTTAACCGTTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGC
ACAGCTAGGCCATTAT
Found at i:443544 original size:68 final size:68
Alignment explanation
Indices: 443431--443704 Score: 370
Period size: 68 Copynumber: 4.0 Consensus size: 68
443421 TATTCTTTTA
* * * * * * *
443431 CTCAACGGTACTTAACCGTTCATCTAACTGGAATAATTGAA-ACCTTTCTGTCAAATGCACAGTT
1 CTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAAAT-AACACCTTTCTGTCATATGCACAGTT
443495 AGGC
65 AGGC
* *
443499 CTCAAAGGCACTTAGCCTTTCATCTATCTGGCATAAATAACACCTTTCTGTCATATGCTCAGTTA
1 CTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAAATAACACCTTTCTGTCATATGCACAGTTA
443564 GGC
66 GGC
* * * * *
443567 CTCAAAGGAACTTAGTCTTTCATCTAACTGGCAGAAATGACACCTTTCTGCCATATGCACAGTTA
1 CTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAAATAACACCTTTCTGTCATATGCACAGTTA
443632 GGC
66 GGC
* * * *
443635 CTCAAAGGCACTTAGTCTCTCATCTAACTGGCATAAATGACACCTTTCTGTCATATTCACAGTTA
1 CTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAAATAACACCTTTCTGTCATATGCACAGTTA
443700 GGC
66 GGC
443703 CT
1 CT
443705 TAAATATTTT
Statistics
Matches: 184, Mismatches: 21, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
67 2 0.01
68 182 0.99
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (68 bp):
CTCAAAGGCACTTAGCCTTTCATCTAACTGGCATAAATAACACCTTTCTGTCATATGCACAGTTA
GGC
Found at i:444054 original size:60 final size:59
Alignment explanation
Indices: 443990--444151 Score: 200
Period size: 60 Copynumber: 2.7 Consensus size: 59
443980 TCCCATATGG
* * * *
443990 AAATTCATACATTTAGTATTAATCTT-TTATCATTTTAGCACACAAGGTGCCCAATACAGA
1 AAATTCATACACTTAGTATGAAT-TTCTTAACATTTTAGCACACAAAGTGCCCAATAC-GA
* ** * *
444050 AAATTCATACACTTAGTATGAATTTCCTAACATTTTAGCACACAAAGTGTTCTATACGG
1 AAATTCATACACTTAGTATGAATTTCTTAACATTTTAGCACACAAAGTGCCCAATACGA
* *
444109 TAATTCATACACTGAGTATGAATTTCTTAACATTTTAGCACAC
1 AAATTCATACACTTAGTATGAATTTCTTAACATTTTAGCACAC
444152 TTAGTGCCAT
Statistics
Matches: 89, Mismatches: 12, Indels: 3
0.86 0.12 0.03
Matches are distributed among these distances:
59 43 0.48
60 46 0.52
ACGTcount: A:0.36, C:0.19, G:0.10, T:0.35
Consensus pattern (59 bp):
AAATTCATACACTTAGTATGAATTTCTTAACATTTTAGCACACAAAGTGCCCAATACGA
Found at i:444178 original size:59 final size:58
Alignment explanation
Indices: 444020--444151 Score: 156
Period size: 59 Copynumber: 2.2 Consensus size: 58
444010 AATCTTTTAT
* * ** * *
444020 CATTTTAGCACACAAGGTGCCCAATACAGAAAATTCATACACTTAGTATGAATTTCCTAA
1 CATTTTAGCACACAAAGTGTCC-ATAC-GGTAATCCATACACTGAGTATGAATTTCCTAA
* * *
444080 CATTTTAGCACACAAAGTGTTCTATACGGTAATTCATACACTGAGTATGAATTTCTTAA
1 CATTTTAGCACACAAAGTG-TCCATACGGTAATCCATACACTGAGTATGAATTTCCTAA
444139 CATTTTAGCACAC
1 CATTTTAGCACAC
444152 TTAGTGCCAT
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
59 41 0.64
60 22 0.34
61 1 0.02
ACGTcount: A:0.36, C:0.20, G:0.12, T:0.32
Consensus pattern (58 bp):
CATTTTAGCACACAAAGTGTCCATACGGTAATCCATACACTGAGTATGAATTTCCTAA
Found at i:444614 original size:95 final size:95
Alignment explanation
Indices: 444468--444662 Score: 248
Period size: 95 Copynumber: 2.1 Consensus size: 95
444458 CCCTTAGTAC
* * * ** *
444468 CGATACTTCTATACTATGGTACTGATACCCCCTTATGGTATCAATGTCAATTTTAGGTTCGA-AG
1 CGATACTACTATACTATGGTACCGATACCCCCTTACGGTATCAATACCAATTTTAGATTCGATA-
*
444532 TTACCTAGTATCGATACCCTTACCATGGTAT
65 TTACCTAGTATCGATACCCTTACCACGGTAT
* * *
444563 CGATACTACTATACTATGTTACCGATACCCCGTTACGGTATCGATACCAATTTTAGATTCGATAT
1 CGATACTACTATACTATGGTACCGATACCCCCTTACGGTATCAATACCAATTTTAGATTCGATAT
* * * *
444628 TGCTTGGTATCGATACCCTTATCACGGTAT
66 TACCTAGTATCGATACCCTTACCACGGTAT
444658 CGATA
1 CGATA
444663 TTATCTCGTC
Statistics
Matches: 85, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
95 84 0.99
96 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.35
Consensus pattern (95 bp):
CGATACTACTATACTATGGTACCGATACCCCCTTACGGTATCAATACCAATTTTAGATTCGATAT
TACCTAGTATCGATACCCTTACCACGGTAT
Found at i:458230 original size:16 final size:17
Alignment explanation
Indices: 458206--458259 Score: 56
Period size: 16 Copynumber: 3.1 Consensus size: 17
458196 GATACAGCTA
458206 TGAGTGTATCCATACAC
1 TGAGTGTATCCATACAC
* *
458223 TG-GTGTATCGATACCCCC
1 TGAGTGTATCCATA--CAC
458241 TGCAGTGTATCCATACAC
1 TG-AGTGTATCCATACAC
458259 T
1 T
458260 CTGGCTGCAA
Statistics
Matches: 29, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
16 10 0.34
17 2 0.07
18 7 0.24
20 10 0.34
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.30
Consensus pattern (17 bp):
TGAGTGTATCCATACAC
Found at i:458236 original size:36 final size:36
Alignment explanation
Indices: 458189--458259 Score: 90
Period size: 36 Copynumber: 2.0 Consensus size: 36
458179 AATGAAAATA
* *
458189 GTGTACCGATACAGCTATG-AGTGTATCCATACACTG
1 GTGTACCGATAC-CCCATGCAGTGTATCCATACACTG
* *
458225 GTGTATCGATACCCCCTGCAGTGTATCCATACACT
1 GTGTACCGATACCCCATGCAGTGTATCCATACACT
458260 CTGGCTGCAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
35 3 0.10
36 27 0.90
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (36 bp):
GTGTACCGATACCCCATGCAGTGTATCCATACACTG
Found at i:458682 original size:33 final size:34
Alignment explanation
Indices: 458614--458682 Score: 95
Period size: 34 Copynumber: 2.1 Consensus size: 34
458604 TTTTGTAAAG
458614 GGAAAAGATTCTAGCTAAGCCCGTGTAAAAACTA
1 GGAAAAGATTCTAGCTAAGCCCGTGTAAAAACTA
* * * *
458648 GGAAAAGGTTCTAGTTTATCCCGTG-AAAAACTA
1 GGAAAAGATTCTAGCTAAGCCCGTGTAAAAACTA
458681 GG
1 GG
458683 GAGTTGTAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
33 10 0.32
34 21 0.68
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (34 bp):
GGAAAAGATTCTAGCTAAGCCCGTGTAAAAACTA
Found at i:459846 original size:82 final size:81
Alignment explanation
Indices: 459702--459903 Score: 251
Period size: 82 Copynumber: 2.5 Consensus size: 81
459692 ATCCAGTTTT
* * * *
459702 ATCTCCCTGAAAGAATAGTTGAGCAGACTCGTCTTCCAACATTGATCTGACTACTAGAAAAAGAA
1 ATCTCCCTGAAAGAAGAGTGGAGCAGACCCGTCTTCCAACATTGATCTGACTACCAGAAAAAGAA
459767 AAACAAATCAAGTCTG
66 AAACAAATCAAGTCTG
* * * *
459783 ATCTACCTTGAAAGAAGAGTGGAGCAGACCCGTTTTCCAACATTGATCTGACTACCCGAAAAAGC
1 ATCT-CCCTGAAAGAAGAGTGGAGCAGACCCGTCTTCCAACATTGATCTGACTACCAGAAAAAGA
** * * *
459848 GGAATATATCAAGTCTT
65 AAAACAAATCAAGTCTG
* **
459865 ATCTCCCTGAAAGAAGAGTGGAGCAAACATGTCTTCCAA
1 ATCTCCCTGAAAGAAGAGTGGAGCAGACCCGTCTTCCAA
459904 AGATTTCTCG
Statistics
Matches: 102, Mismatches: 18, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
81 34 0.33
82 68 0.67
ACGTcount: A:0.37, C:0.22, G:0.18, T:0.23
Consensus pattern (81 bp):
ATCTCCCTGAAAGAAGAGTGGAGCAGACCCGTCTTCCAACATTGATCTGACTACCAGAAAAAGAA
AAACAAATCAAGTCTG
Found at i:459934 original size:218 final size:216
Alignment explanation
Indices: 459556--460038 Score: 605
Period size: 218 Copynumber: 2.2 Consensus size: 216
459546 CAATTTTTTC
* *
459556 TCAAGTCTGATCTCCCCTGAAAGAAAGTGGAGCAGACTCATCTTCCAACATTGATCTGACTACCC
1 TCAAGTCTGATCT-CCCTGAAAGAAAGTGGAGCAGACCCGTCTTCCAACATTGATCTGACTACCC
* * *
459621 TAAAAAGAGGAATAGATCAAGTATGATCTTCCATGAAAGAAGAGTGGAGCATACCTGTCTTCAAA
65 GAAAAAGAGGAATAGATCAAGTATGATCTTCCATGAAAGAAGAGTGGAGCAAACATGTCTTCAAA
* * * *
459686 AGGTTTATCCAGTTTTATCTCCCTGAAAGAATAG-TTGAGCAGACTCGTCTTCC-AACATTGATC
130 AGATTTATCCAGTCTTATCTCCCTGAAAGAATAGCGT-AGCAGAAT-GTCTTCCGAA-ATTGATC
*
459749 TGACTA-CTAGAAAAAGAAAAACAAA
192 TGAATACCT-GAAAAAGAAAAACAAA
* *
459774 TCAAGTCTGATCTACCTTGAAAGAAGAGTGGAGCAGACCCGTTTTCCAACATTGATCTGACTACC
1 TCAAGTCTGATCT-CCCTGAAAGAA-AGTGGAGCAGACCCGTCTTCCAACATTGATCTGACTACC
* * * * * *
459839 CGAAAAAGCGGAATATATCAAGTCTTATC-TCCCTGAAAGAAGAGTGGAGCAAACATGTCTTCCA
64 CGAAAAAGAGGAATAGATCAAGTATGATCTTCCATGAAAGAAGAGTGGAGCAAACATGTCTTCAA
* * * *
459903 AAGATTTCTCGAGTCTTATCTCCCTGAAAGAATAGCGTAGCAGAATTTTTTCCGAAATTGATCTG
129 AAGATTTATCCAGTCTTATCTCCCTGAAAGAATAGCGTAGCAGAATGTCTTCCGAAATTGATCTG
** *
459968 AATACCTGAAAAAGAGGAACATA
194 AATACCTGAAAAAGAAAAACAAA
* * * *
459991 TCAAGTCTTATCTCCCTAAAAGAATAGTGGAGCGGACGCGTCTTCCAA
1 TCAAGTCTGATCTCCCTGAAAGAA-AGTGGAGCAGACCCGTCTTCCAA
460039 AGATTTATCG
Statistics
Matches: 228, Mismatches: 33, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
216 29 0.13
217 42 0.18
218 96 0.42
219 61 0.27
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.25
Consensus pattern (216 bp):
TCAAGTCTGATCTCCCTGAAAGAAAGTGGAGCAGACCCGTCTTCCAACATTGATCTGACTACCCG
AAAAAGAGGAATAGATCAAGTATGATCTTCCATGAAAGAAGAGTGGAGCAAACATGTCTTCAAAA
GATTTATCCAGTCTTATCTCCCTGAAAGAATAGCGTAGCAGAATGTCTTCCGAAATTGATCTGAA
TACCTGAAAAAGAAAAACAAA
Found at i:460062 original size:135 final size:135
Alignment explanation
Indices: 459777--460159 Score: 439
Period size: 135 Copynumber: 2.8 Consensus size: 135
459767 AAACAAATCA
* * * * ** *
459777 AGTCTGATCTACCTTGAAAGAAGAGTGGAGCAGACCCGTTTTCCAACATTGATCTGACTACCCGA
1 AGTCTTATCT-CCCTGAAAGAATAGTAGAGCAGAATCATTTTCCAA-ATTGATCTGACTACCCGA
* * * *
459842 AAAAGCGGAATATATCAAGTCTTATCTCCCTGAAAGAAGAGTGGAGCAAACATGTCTTCCAAAGA
64 AAAAGAGGAACATATCAAGTCTTATCTCCCTGAAAGAATAGTGGAGCAAACACGTCTTCCAAAGA
*
459907 TTTCTCG
129 TTTATCG
* * * *
459914 AGTCTTATCTCCCTGAAAGAATAG-CGTAGCAGAAT-TTTTTCCGAAATTGATCTGAATACCTGA
1 AGTCTTATCTCCCTGAAAGAATAGTAG-AGCAGAATCATTTTCC-AAATTGATCTGACTACCCGA
* ** *
459977 AAAAGAGGAACATATCAAGTCTTATCTCCCTAAAAGAATAGTGGAGCGGACGCGTCTTCCAAAGA
64 AAAAGAGGAACATATCAAGTCTTATCTCCCTGAAAGAATAGTGGAGCAAACACGTCTTCCAAAGA
460042 TTTATCG
129 TTTATCG
* * * *
460049 AGTCTTATTTCCCTGAAAGAATAGTAGAGTAGACTCATTTTCCAAAATTGATCTGACTACCCAAA
1 AGTCTTATCTCCCTGAAAGAATAGTAGAGCAGAATCATTTTCC-AAATTGATCTGACTACCCGAA
* * *
460114 AAAGAGGAACAAATCAAGGT-TCATGTCCCCTGAAAGAATAGTGGAG
65 AAAGAGGAACATATCAA-GTCTTATCT-CCCTGAAAGAATAGTGGAG
460160 AAGATTTCCC
Statistics
Matches: 209, Mismatches: 31, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
135 115 0.55
136 65 0.31
137 29 0.14
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.26
Consensus pattern (135 bp):
AGTCTTATCTCCCTGAAAGAATAGTAGAGCAGAATCATTTTCCAAATTGATCTGACTACCCGAAA
AAGAGGAACATATCAAGTCTTATCTCCCTGAAAGAATAGTGGAGCAAACACGTCTTCCAAAGATT
TATCG
Found at i:460092 original size:55 final size:55
Alignment explanation
Indices: 459989--460094 Score: 131
Period size: 55 Copynumber: 1.9 Consensus size: 55
459979 AAGAGGAACA
* * *
459989 TATCAAGTCTTATCTCCCTAAAAGAATAGTGGAGCGGACGCGTCTTCCAAAGATT
1 TATCAAGTCTTATCTCCCTAAAAGAATAGTAGAGCAGACGCATCTTCCAAAGATT
* * * * * *
460044 TATCGAGTCTTATTTCCCTGAAAGAATAGTAGAGTAGACTCATTTTCCAAA
1 TATCAAGTCTTATCTCCCTAAAAGAATAGTAGAGCAGACGCATCTTCCAAA
460095 ATTGATCTGA
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
55 42 1.00
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (55 bp):
TATCAAGTCTTATCTCCCTAAAAGAATAGTAGAGCAGACGCATCTTCCAAAGATT
Found at i:461485 original size:93 final size:93
Alignment explanation
Indices: 461378--461566 Score: 360
Period size: 93 Copynumber: 2.0 Consensus size: 93
461368 TTTTTGTCAC
461378 AGTGTGTATAGTTGATATTATTTGGGAAAATTATTTGAATGTCATTCGAATTTGTAAAAGTTATA
1 AGTGTGTATAGTTGATATTATTTGGGAAAATTATTTGAATGTCATTCGAATTTGTAAAAGTTATA
461443 ATTTTAATCCCTTGTTATATGTTATGAA
66 ATTTTAATCCCTTGTTATATGTTATGAA
* *
461471 AGTGTGTATGGTTGATATTATTTGGGAAAATTATTTGAATGTCATTCGAATTTGTAAAAGTTGTA
1 AGTGTGTATAGTTGATATTATTTGGGAAAATTATTTGAATGTCATTCGAATTTGTAAAAGTTATA
461536 ATTTTAATCCCTTGTTATATGTTATGAA
66 ATTTTAATCCCTTGTTATATGTTATGAA
461564 AGT
1 AGT
461567 TTCTGATTTT
Statistics
Matches: 94, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
93 94 1.00
ACGTcount: A:0.31, C:0.05, G:0.19, T:0.45
Consensus pattern (93 bp):
AGTGTGTATAGTTGATATTATTTGGGAAAATTATTTGAATGTCATTCGAATTTGTAAAAGTTATA
ATTTTAATCCCTTGTTATATGTTATGAA
Found at i:462061 original size:20 final size:20
Alignment explanation
Indices: 462028--462067 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
462018 CTTGGCAGGG
462028 GTATCAGTACTGGAAGAACA
1 GTATCAGTACTGGAAGAACA
* *
462048 GTATCGGTATTGGAAGAACA
1 GTATCAGTACTGGAAGAACA
462068 ATACCGATAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.38, C:0.12, G:0.28, T:0.23
Consensus pattern (20 bp):
GTATCAGTACTGGAAGAACA
Found at i:462703 original size:44 final size:44
Alignment explanation
Indices: 462653--462926 Score: 266
Period size: 44 Copynumber: 6.0 Consensus size: 44
462643 AAATGAATGA
*
462653 ATAAATGAAAATGCATAACGGTGCATTATTGGAAGAAAGGTGCC
1 ATAAATGAAAATGCATAACGGTGCATTATTGGCAGAAAGGTGCC
* * *
462697 ATAAATGAAAATGCATAACGCTGCGTTATTGACAGAAAGGTGGCAGAAAGGTTCC
1 ATAAATGAAAATGCATAACGGTGC---ATT-------A-TTGGCAGAAAGGTGCC
* * *
462752 ATAAATGAAAAAGCATAACGGTGCATTATTGGCAGAAAAGTGAC
1 ATAAATGAAAATGCATAACGGTGCATTATTGGCAGAAAGGTGCC
* * * * *
462796 ATAAATGAAAAATACATAACGGTGAATTATTGGTAGGAAGGTGTC
1 ATAAATG-AAAATGCATAACGGTGCATTATTGGCAGAAAGGTGCC
*
462841 AT-AA--AAAATGCATAACGATGCATTATTGGCAGAAAGGTGCC
1 ATAAATGAAAATGCATAACGGTGCATTATTGGCAGAAAGGTGCC
* * * *
462882 GTAAATGAAAATTCATAACGATGAATTATTGGCAGAAAGGTGCC
1 ATAAATGAAAATGCATAACGGTGCATTATTGGCAGAAAGGTGCC
462926 A
1 A
462927 CTCATGGTAT
Statistics
Matches: 188, Mismatches: 27, Indels: 30
0.77 0.11 0.12
Matches are distributed among these distances:
41 32 0.17
42 2 0.01
44 79 0.42
45 33 0.18
47 3 0.02
52 3 0.02
54 1 0.01
55 35 0.19
ACGTcount: A:0.42, C:0.12, G:0.24, T:0.23
Consensus pattern (44 bp):
ATAAATGAAAATGCATAACGGTGCATTATTGGCAGAAAGGTGCC
Found at i:462747 original size:55 final size:55
Alignment explanation
Indices: 462686--462789 Score: 163
Period size: 55 Copynumber: 1.9 Consensus size: 55
462676 CATTATTGGA
* *
462686 AGAAAGGTGCCATAAATGAAAATGCATAACGCTGCGTTATTGACAGAAAGGTGGC
1 AGAAAGGTGCCATAAATGAAAAAGCATAACGCTGCATTATTGACAGAAAGGTGGC
* * *
462741 AGAAAGGTTCCATAAATGAAAAAGCATAACGGTGCATTATTGGCAGAAA
1 AGAAAGGTGCCATAAATGAAAAAGCATAACGCTGCATTATTGACAGAAA
462790 AGTGACATAA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
55 44 1.00
ACGTcount: A:0.41, C:0.13, G:0.25, T:0.20
Consensus pattern (55 bp):
AGAAAGGTGCCATAAATGAAAAAGCATAACGCTGCATTATTGACAGAAAGGTGGC
Found at i:462922 original size:85 final size:85
Alignment explanation
Indices: 462759--462923 Score: 242
Period size: 85 Copynumber: 1.9 Consensus size: 85
462749 TCCATAAATG
* *
462759 AAAAAGCATAACGGTGCATTATTGGCAGAAAAGTGACATAAATGAAAAATACATAACGGTGAATT
1 AAAAAGCATAACGATGCATTATTGGCAGAAAAGTGACATAAATGAAAAATACATAACGATGAATT
* *
462824 ATTGGTAGGAAGGTGTCATA
66 ATTGGCAGAAAGGTGTCATA
* * * *
462844 AAAAATGCATAACGATGCATTATTGGCAGAAAGGTGCCGTAAATG-AAAATTCATAACGATGAAT
1 AAAAA-GCATAACGATGCATTATTGGCAGAAAAGTGACATAAATGAAAAATACATAACGATGAAT
462908 TATTGGCAGAAAGGTG
65 TATTGGCAGAAAGGTG
462924 CCACTCATGG
Statistics
Matches: 71, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
85 36 0.51
86 35 0.49
ACGTcount: A:0.42, C:0.10, G:0.24, T:0.24
Consensus pattern (85 bp):
AAAAAGCATAACGATGCATTATTGGCAGAAAAGTGACATAAATGAAAAATACATAACGATGAATT
ATTGGCAGAAAGGTGTCATA
Found at i:465884 original size:18 final size:17
Alignment explanation
Indices: 465843--465886 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
465833 TAAGTGTGAT
465843 GTTCATTTAAACATGCA
1 GTTCATTTAAACATGCA
* **
465860 TTTCATTTAAAGCATTTA
1 GTTCATTTAAA-CATGCA
465878 GTTCATTTA
1 GTTCATTTA
465887 GGAAAGTAGT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 10 0.45
18 12 0.55
ACGTcount: A:0.32, C:0.14, G:0.09, T:0.45
Consensus pattern (17 bp):
GTTCATTTAAACATGCA
Found at i:465986 original size:17 final size:17
Alignment explanation
Indices: 465946--466016 Score: 97
Period size: 17 Copynumber: 4.1 Consensus size: 17
465936 TTCATGCATA
* *
465946 TAGTTCATTGATTAAAGT
1 TAGTTCATTCATTAAA-C
*
465964 TAGTTCATTAATTAAAC
1 TAGTTCATTCATTAAAC
*
465981 TAGTTCATTCATCAAAC
1 TAGTTCATTCATTAAAC
465998 TAGTTCATTCATTAAAC
1 TAGTTCATTCATTAAAC
466015 TA
1 TA
466017 ACTCTTAATT
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
17 33 0.69
18 15 0.31
ACGTcount: A:0.37, C:0.14, G:0.08, T:0.41
Consensus pattern (17 bp):
TAGTTCATTCATTAAAC
Found at i:470050 original size:17 final size:17
Alignment explanation
Indices: 470028--470077 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
470018 AATAAAGTTG
470028 GTTCATTAATTAAACTA
1 GTTCATTAATTAAACTA
* * *
470045 GTTCATTCATCAAGCTA
1 GTTCATTAATTAAACTA
* *
470062 CTTCATTTATTAAACT
1 GTTCATTAATTAAACT
470078 GACTCTTAAT
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.34, C:0.18, G:0.06, T:0.42
Consensus pattern (17 bp):
GTTCATTAATTAAACTA
Found at i:474433 original size:13 final size:13
Alignment explanation
Indices: 474417--474459 Score: 86
Period size: 13 Copynumber: 3.3 Consensus size: 13
474407 AAAGAAACAA
474417 GAAAAAAAGAAAG
1 GAAAAAAAGAAAG
474430 GAAAAAAAGAAAG
1 GAAAAAAAGAAAG
474443 GAAAAAAAGAAAG
1 GAAAAAAAGAAAG
474456 GAAA
1 GAAA
474460 CCAATCAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 30 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (13 bp):
GAAAAAAAGAAAG
Found at i:477079 original size:20 final size:20
Alignment explanation
Indices: 477016--477080 Score: 60
Period size: 20 Copynumber: 3.1 Consensus size: 20
477006 AGTAAGTCCA
*
477016 TCGGGCCATCAGTAAGTCTT
1 TCGGGCCATCTGTAAGTCTT
* * *
477036 TCGAG-CATAATGTTTAAATCTT
1 TCGGGCCAT-CTG--TAAGTCTT
477058 TCGGGCCATCTGTAAGTCTT
1 TCGGGCCATCTGTAAGTCTT
477078 TCG
1 TCG
477081 AGCAAGATGG
Statistics
Matches: 34, Mismatches: 7, Indels: 8
0.69 0.14 0.16
Matches are distributed among these distances:
19 3 0.09
20 15 0.44
22 13 0.38
23 3 0.09
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.35
Consensus pattern (20 bp):
TCGGGCCATCTGTAAGTCTT
Found at i:477403 original size:41 final size:42
Alignment explanation
Indices: 477317--477403 Score: 95
Period size: 41 Copynumber: 2.1 Consensus size: 42
477307 GGGCCATCAG
* * * * *
477317 TAAGTCTTTCAAGCATGATGCTTAAATCCTTCGGATCAACTA
1 TAAGTCTTTCAAGCAAGATGCGTAAATCCTTCGAACCAACCA
* * *
477359 TAAGTCTTTCGAGCAAGATG-GTAAGTCCTTCGAACCATCCA
1 TAAGTCTTTCAAGCAAGATGCGTAAATCCTTCGAACCAACCA
477400 TAAG
1 TAAG
477404 ACCATCGGGC
Statistics
Matches: 37, Mismatches: 8, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
41 19 0.51
42 18 0.49
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (42 bp):
TAAGTCTTTCAAGCAAGATGCGTAAATCCTTCGAACCAACCA
Found at i:477932 original size:292 final size:293
Alignment explanation
Indices: 476792--482929 Score: 6683
Period size: 292 Copynumber: 21.2 Consensus size: 293
476782 AGGGTTTCTT
* * * * * * *
476792 GATGAGTAACTCCTTCGGGCCATACATAAGTCCTTTGGCCAGGATGTTTTCAAATGAGTTATTAG
1 GATG-GTAAGTCCTTCGGACCATCCATAAGACCTTCGGGCAGGATGTTTTCAAATGAGTTTTTAG
* * * * * ** *
476857 AAACTAAGCCTGATTTTTAGTGGTTTCTTGATTATTATCTCCAAAGAGTTTTGAAATAAAGCTAT
65 AAACTAAGCCTGATTTTCAGGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAAGGAAGCTAA
* * * * * * * *
476922 GCCTAATTTTTAAGGGCTCCTTGATAATAACTGAAAATAAAATAATTTAAGACACTAAGCTTGAT
130 GCCTAATTTTTAGGGGTTCCTTGATGACAACTGAAAATGAAAGATTTTAAGAAACTAAGCTTGAT
* * * *
476987 TTTCAAGTGTTTCTTGATGAGTAAGTCCATCGGGCCATCAGTAAGTCTTTCGAGCATAATGTTTA
195 TTTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTA
* * *
477052 AATCTTTCGGGCCATCTGTAAGTCTTTCGAGCAA
260 AATCCTTCGGGTCATCTATAAGTCTTTCGAGCAA
* * * *
477086 GATGGTAAATCCTTCGGATCATCCATAAGACCTTCAGGCAAGATGTTTTCAAATGAG-TTTTAGA
1 GATGGTAAGTCCTTCGGACCATCCATAAGACCTTCGGGCAGGATGTTTTCAAATGAGTTTTTAGA
* ** * *
477150 AACTAGGCCTGATTTTCAGTTGTTTCTTGATGATTATCTCCAAAGAATTTTTAAAGAAAGGTAAG
66 AACTAAGCCTGATTTTCAGGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAAGGAAGCTAAG
* * * **
477215 CCTAATTTTTAGGGGTTACTCGATGACAACTGAAAATGAAATATTTTAAGAAACTAATATTGA-T
131 CCTAATTTTTAGGGGTTCCTTGATGACAACTGAAAATGAAAGATTTTAAGAAACTAAGCTTGATT
* * * *
477279 TT-AAGGGTTT-TTTATGAGTAATTCCTTTGGGCCATCAGTAAGTCTTTCAAGCATGATGCTTAA
196 TTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAA
* *
477342 ATCCTTCGGATCAACTATAAGTCTTTCGAGCAA
261 ATCCTTCGGGTCATCTATAAGTCTTTCGAGCAA
* * * * *
477375 GATGGTAAGTCCTTCGAACCATCCATAAGACCATCGGGCGGGAAGTTTTCAAATGCGTTTTTAGA
1 GATGGTAAGTCCTTCGGACCATCCATAAGACCTTCGGGCAGGATGTTTTCAAATGAGTTTTTAGA
* * * * * *
477440 AACTAAGCATGATTTTAATGTGTTTCTTGATAATTATCTCCAAAGAA-TTTTAAAAGAAGCTAAG
66 AACTAAGCCTGATTTTCAGGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAAGGAAGCTAAG
*
477504 CCTAATTTTTAGGGGTTCCTT-ATTGACAA-TAGAAAATGAAATATTTTAA-AAACTAAGCTTGA
131 CCTAATTTTTAGGGGTTCCTTGA-TGACAACT-GAAAATGAAAGATTTTAAGAAACTAAGCTTGA
* * * * *
477566 TTTTCAAAGGTTTCTTGAAGAGTAATTCCATT-GGGCCATCAGTCAGTCTTTCAAGCATGATGCT
194 TTTTCAAGGGTTTCTTGATGAGTAAGTCC-TTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCT
*
477630 TAAATCCTTCGGCTCATCTATAAGTCTTT-GAGCAA
258 TAAATCCTTCGGGTCATCTATAAGTCTTTCGAGCAA
* * * * * * ** *
477665 GATGGTAAGTCTTTTGAACCATACC-CAAGACATTCAGGTGGGATGTTTTCCAATGAGTTTTTAG
1 GATGGTAAGTCCTTCGGACCAT-CCATAAGACCTTCGGGCAGGATGTTTTCAAATGAGTTTTTAG
* * * * * * **
477729 AAACTAAGCATGATTTTTAGGGATTTCCTT-ATTATTATCACCAAAAAAAATTTAAAGGAAGCTA
65 AAACTAAGCCTGATTTTCAGGGGTTT-CTTGATGATTATCTCCAAAGAATTTTTAAAGGAAGCTA
*
477793 AGCCTAATTTTTAGGGGTTCCTTGATGACAACTGAAAA-GTAAAGATTTTAAG-AGCATAAGCTT
129 AGCCTAATTTTTAGGGGTTCCTTGATGACAACTGAAAATG-AAAGATTTTAAGAAAC-TAAGCTT
* * * * * *
477856 GATTTTCAAGGGTTTCTTGATGAGTAAGTCATTCGAGCCATCACTAAATCTTTTGAGCATGATGT
192 GATTTTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGC
477921 TTAAATCCTTCGGGTCATCTATAAGTCTTTCGAGCAA
257 TTAAATCCTTCGGGTCATCTATAAGTCTTTCGAGCAA
* * *
477958 GATGGTATA-TCCTTCAGACCATCCATAAGA-TTTCGGGTAGGATGTTTTCAAATGAGTTTTTAG
1 GATGGTA-AGTCCTTCGGACCATCCATAAGACCTTCGGGCAGGATGTTTTCAAATGAGTTTTTAG
478021 AAACTAAGCCTGATTTTCAGGGGTTTC---ATGATTATCTCCAAAGAATTTTTAAAGGAAGCTAA
65 AAACTAAGCCTGATTTTCAGGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAAGGAAGCTAA
* *
478083 GCCTAATTCTTT-GGGGTTCCTTGATGAC-ACAG-ACA--AAAGATTTTAA-ATAACT-AG-TTG
130 GCCTAATT-TTTAGGGGTTCCTTGATGACAACTGAAAATGAAAGATTTTAAGA-AACTAAGCTTG
* * ** *
478140 -TATTTCAAGGATTT-TTAATGAGTAAGTGTTTCGGGCCATCAGTAAGTCTTTCGAGAATGATGC
193 AT-TTTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGC
* *
478203 TTAAATCCTTCGGGTCATCAATAAGTCTTTTGAGCAA
257 TTAAATCCTTCGGGTCATCTATAAGTCTTTCGAGCAA
* * * * * * * * *
478240 GATGATAATTCCATC-GAGCAATCTATAAGACCTTCAGGCAAGATATCTTT-AAATGAGATTTTA
1 GATGGTAAGTCCTTCGGA-CCATCCATAAGACCTTCGGGCAGGATGT-TTTCAAATGAGTTTTTA
* * * * *
478303 GAAACTAAGCCTGATATTT-AAGGGTTTCTTGATGATTTTTTCCAAAGAAATTTTAAATGATA-C
64 GAAACTAAGCCTGAT-TTTCAGGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAAGGA-AGC
* * * * *
478366 CAAGCCAAAATTTTAGTGGTTCCTTAATGACAACTGAAAATGAAAGATTTTAAGAAACTAAGCTT
127 TAAGCCTAATTTTTAGGGGTTCCTTGATGACAACTGAAAATGAAAGATTTTAAGAAACTAAGCTT
* * * * * *
478431 GATTTTCAAGGGTTTCTTGATTAGTAAATCCTTTGGGCCATCAGTAAATCTTTTGAGCATGATGT
192 GATTTTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGC
* *
478496 TTAAATCCTTCGAGTCATCTATAAGTCTTTCTAGCAA
257 TTAAATCCTTCGGGTCATCTATAAGTCTTTCGAGCAA
* * ** * * * * *
478533 GATGGTAAGTCGTTCAGATAATCCATAAGACCTTTGGGAAAGATGTTTTCCAATGATTTTTTAGA
1 GATGGTAAGTCCTTCGGACCATCCATAAGACCTTCGGGCAGGATGTTTTCAAATGAGTTTTTAGA
* * *
478598 AACTAAGCCTGATTTTTAGGGGTTTCTTGATGATCATCTCCAAAGAATTTTTAATGGAAGCTAAG
66 AACTAAGCCTGATTTTCAGGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAAGGAAGCTAAG
* *
478663 CCTAATTTTTAGGGGTTCCTTGATGACAACAGAAAATGAAAGATTTTAGGAAACTAAGCTTGATT
131 CCTAATTTTTAGGGGTTCCTTGATGACAACTGAAAATGAAAGATTTTAAGAAACTAAGCTTGATT
**** * * *
478728 TTCAAGGGTTTCTTGATGAGTAAGTCCTAATAGCCATCAGTGACTCTATCGAGCATGATGCTTAA
196 TTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAA
* * *
478793 ATCTTTCGGGTTATCTATAAGTCTTTCGAGTAA
261 ATCCTTCGGGTCATCTATAAGTCTTTCGAGCAA
* *** ** *
478826 GATGGTAAGTTCTTCCTTCCATTTATAGGACCTTCGGGCAGGATGTTTTCAAATGAGTTTTTAGA
1 GATGGTAAGTCCTTCGGACCATCCATAAGACCTTCGGGCAGGATGTTTTCAAATGAGTTTTTAGA
* * * * *
478891 AACTAAGCCTGATTTTCAGGGGTTTCCTGATTATTATCTCCAAATATTTTTTAAAGGAAGCCAAG
66 AACTAAGCCTGATTTTCAGGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAAGGAAGCTAAG
* * * * * *
478956 CCTAATTTTTAGGGGCTCCTTGATGACAATTGAAAACGAAATATTTTAAAAAACTAAACTTGATT
131 CCTAATTTTTAGGGGTTCCTTGATGACAACTGAAAATGAAAGATTTTAAGAAACTAAGCTTGATT
* * *
479021 TTCAAGGGTTTCTAGATGAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCAATCATGATGCTTAA
196 TTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAA
* * *
479086 ATCCTTCGGGTCATCAATAAGTCTTTCAAGTAA
261 ATCCTTCGGGTCATCTATAAGTCTTTCGAGCAA
*
479119 GAT-GTAAGTCCTTCGGACCATCCGTAAGACCTTCGGGCA-G--G---T----TG-G-TTTTAGA
1 GATGGTAAGTCCTTCGGACCATCCATAAGACCTTCGGGCAGGATGTTTTCAAATGAGTTTTTAGA
* *
479171 AACTAAGCCTGATTTTCAGGGGTTTCTTAATGATTATATCCAAAGAATTTTTAAAGGAAGCTAAG
66 AACTAAGCCTGATTTTCAGGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAAGGAAGCTAAG
* * * * *
479236 TCTAATTTTTAGCGATTCCCTGATGACAACTGAAAATGAAAGATTTTAAGAAACTATGCTTGATT
131 CCTAATTTTTAGGGGTTCCTTGATGACAACTGAAAATGAAAGATTTTAAGAAACTAAGCTTGATT
* * * *
479301 TTCAAGAGTTTCTTGGTGAGTAAGTTCTTCGGGCCATCAGCAAGTCTTTCGAGCATGATGCTTAA
196 TTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAA
* * * *
479366 ATCCTTCAGGTCATCTATAACTCTTTTGAGAAA
261 ATCCTTCGGGTCATCTATAAGTCTTTCGAGCAA
* *
479399 GATGGTAAGTCCTTCGGACCATCCATAAGACCTTCGGGCAGGATGTTTTCAAATGCGTTTTTTGA
1 GATGGTAAGTCCTTCGGACCATCCATAAGACCTTCGGGCAGGATGTTTTCAAATGAGTTTTTAGA
* ** * * *
479464 AATTAAGCCCAATTTTTAGAGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAATGAAGCTAAG
66 AACTAAGCCTGATTTTCAGGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAAGGAAGCTAAG
* * *
479529 CCTAATTTTTAGGGGTTCCTTGATGACAACTGAAAATGAAATATTTTAAGAATCTAAACTTGATT
131 CCTAATTTTTAGGGGTTCCTTGATGACAACTGAAAATGAAAGATTTTAAGAAACTAAGCTTGA-T
* * * ** * *
479594 TTTCAAGGGTTTCTTGATGACTAAGTTCTTCGGGCCATCAGAAACACTTTTGAGCATGATGTTTA
195 TTTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTA
* * ** *
479659 AATCCTTCTGGTCATCTATATGTCTTTTAACCAA
260 AATCCTTCGGGTCATCTATAAGTCTTTCGAGCAA
** * * * * *
479693 GATAATAAGTCCATCGGGCCATCCATAAGACCTTCGGGTAAGATGTTTTCAAATGAGTTTCTAGA
1 GATGGTAAGTCCTTCGGACCATCCATAAGACCTTCGGGCAGGATGTTTTCAAATGAGTTTTTAGA
* * * * * *
479758 AAGTACGCCTGATTTTTAGGGGTTTCTTGAAGATTATCTCC-AAGGATTTTTAAA-GAACCTAAG
66 AACTAAGCCTGATTTTCAGGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAAGGAAGCTAAG
*
479821 CCTAGTTTTTAGGGGTTCCTTGATGACAACTGAAAATGAAAGATTTTAAGAAACTAAGCTTGATT
131 CCTAATTTTTAGGGGTTCCTTGATGACAACTGAAAATGAAAGATTTTAAGAAACTAAGCTTGATT
* * * * * *
479886 TTCAAAGGTTTCTTTATGAGTAAGTCCATCGGGCCGTTAGTAAGTCTTTCTAGCATGATGCTTAA
196 TTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAA
* * * *
479951 ATCCTTTGGATCATTTATAAGTCTTTCGTGCAA
261 ATCCTTCGGGTCATCTATAAGTCTTTCGAGCAA
* * * * * * * *
479984 GTTTGTAAGTTCTTCGGGCCATCCATAAAACTTTCGGCCATGATG-TTTCAAAATGAGTTTTTAG
1 GATGGTAAGTCCTTCGGACCATCCATAAGACCTTCGGGCAGGATGTTTTC-AAATGAGTTTTTAG
* * * * * * * * *
480048 AAAATAAGCTTGATTTTTAGGGGTTTCTTAATGATTATCTCCCAATATTTTTTAAAGGGAGTTAA
65 AAACTAAGCCTGATTTTCAGGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAAGGAAGCTAA
* * *
480113 ACCTAAGTTTTT-GGGGTTCCTTGATGACAACTG-AAACGAAAGATTTTAAGATACTAAGCTTGA
130 GCCTAA-TTTTTAGGGGTTCCTTGATGACAACTGAAAATGAAAGATTTTAAGAAACTAAGCTTGA
* * * *
480176 TTTTCAAGGGATTCTTGATGAGTAAGTCCTTCAGGCCATCAGAAAGTCTTTCGAGCATGATGCCT
194 TTTTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTT
* * ** * **
480241 AAATCCTTTGGATCAGATA-AATGTCTTTTGAATAA
259 AAATCCTTCGGGTCATCTATAA-GTCTTTCGAGCAA
* * * * * * * * *
480276 GATGATAAGTCCTTCTG-CCAATCCATAAGATCTTCTGGCATGATGTTTTTAAATTATTTTTTGG
1 GATGGTAAGTCCTTCGGACC-ATCCATAAGACCTTCGGGCAGGATGTTTTCAAATGAGTTTTTAG
* * *** * *
480340 AAACTAAGCATGATTTTCAGGGGTTTCTTGAAGATTATCGAGAAAGAATTTTTAAAGAAAGCTTA
65 AAACTAAGCCTGATTTTCAGGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAAGGAAGCTAA
* * * *
480405 GCTTAATTTTTAGGTGTTCCTTGATGACAATTGAAAATGAAAGATTTT-AGAAATTAAGCTTGAT
130 GCCTAATTTTTAGGGGTTCCTTGATGACAACTGAAAATGAAAGATTTTAAGAAACTAAGCTTGAT
* * * *
480469 ATTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGACCATCAG-ATAGTCCTTCAAGCATGATGCTT
195 TTTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCAGTA-AGTCTTTCGAGCATGATGCTT
* *
480533 AAATCCTTCGTGTCATCTATAAGTCTTT-TACGCAA
259 AAATCCTTCGGGTCATCTATAAGTCTTTCGA-GCAA
* * * * * *
480568 GATGATAAGTCCGTT-GTG-CCATCCGTAAGACCTTCGAGCAAGATGTTTTTAAATGTGTTTTTA
1 GATGGTAAGTCC-TTCG-GACCATCCATAAGACCTTCGGGCAGGATGTTTTCAAATGAGTTTTTA
* * * * * *
480631 AAAACTAAGCCTAATATTCAGGGGCTTCTTGATAATTATCTCCAAAGAATTTTTAAAGGAAACTA
64 GAAACTAAGCCTGATTTTCAGGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAAGGAAGCTA
* * * **
480696 AGCCTAATTCTT-GGGATTTCC-TGATGGCAACTGAAAATGAAATG-TTTTAAGAGTCTAAGCTT
129 AGCCTAATTTTTAGGG-GTTCCTTGATGACAACTGAAAATGAAA-GATTTTAAGAAACTAAGCTT
* * *
480758 GATTTTCAAGGGTTTCTTGATGAGTAAGTCCTTCAGGCCATCAATAAGTCTTTCAAGCATGATGC
192 GATTTTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGC
* *
480823 TTAAATCCTTCAGGTCA--TAT-AGTCTTT-TACGCAA
257 TTAAATCCTTCGGGTCATCTATAAGTCTTTCGA-GCAA
* * * * * *
480857 GATGATAAGTCCGTT-GGGCCATCCATAAGACCTTCAGGCAAGATGTTTTCAAATGTGCTTTTAG
1 GATGGTAAGTCC-TTCGGACCATCCATAAGACCTTCGGGCAGGATGTTTTCAAATGAGTTTTTAG
* * * * *
480921 AAACTAAGCCTAATATTCAGGGGTTTCTTGATAATTACCTCCAAAGAATTTTTAAAGTAAGCTAA
65 AAACTAAGCCTGATTTTCAGGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAAGGAAGCTAA
* * * * * *
480986 GCCTAAATTTTAGTGGTTCCAT-ATTGACAAATAAAAATGAAAGATTTTAAGAAACTATGCTTGA
130 GCCTAATTTTTAGGGGTTCCTTGA-TGACAACTGAAAATGAAAGATTTTAAGAAACTAAGCTTGA
* * * * *
481050 TTTTCAAGGTTTTCTTGATAAGTAGGTCCTTCGAGCCATCTGTAAGTCTTTCGAGCATGATGCTT
194 TTTTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTT
*
481115 AAATCCTTCGGGTCATCTAT--GTCTTTAGAGCAA
259 AAATCCTTCGGGTCATCTATAAGTCTTTCGAGCAA
* * * * * * *
481148 GATGGAAAGTCCTTCGGGCCAACTATAGGACCTTCGGGCAGGATGTTTTCAAATGGGTTTTTAAA
1 GATGGTAAGTCCTTCGGACCATCCATAAGACCTTCGGGCAGGATGTTTTCAAATGAGTTTTTAGA
* * * * *
481213 AACTAAGCCTGATTTCCAGGGGTTTCTTGAAGATCATCTCCAAATAATTTTTAAAGGAATCTAAG
66 AACTAAGCCTGATTTTCAGGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAAGGAAGCTAAG
* * *
481278 ACTAATTATTAGGGGTTCCTTGATGA-AA-TGAAAACGAAAGATTTTAAGAAACTAAGCTTGATT
131 CCTAATTTTTAGGGGTTCCTTGATGACAACTGAAAATGAAAGATTTTAAGAAACTAAGCTTGATT
**** * * *
481341 TTCAAGGGTTTCTTGATGAGTAAGTCCTTTTACCCATTAGTAAGTCATTCGAACATGATGCTTAA
196 TTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAA
* * *
481406 ATCCTTCGGGTCATCTATTAGTCTTTAGATCAA
261 ATCCTTCGGGTCATCTATAAGTCTTTCGAGCAA
* * * * * * * * * *
481439 GATGGTAAGTCCATCGGGA-TAACTATAGGTCATTCGGGTAGGATGTTTTCAAATGTGGTTTTAG
1 GATGGTAAGTCCTTC-GGACCATCCATAAGACCTTCGGGCAGGATGTTTTCAAATGAGTTTTTAG
* * *
481503 AAACTAAGCCTGATTTTTAGGGGTTTCATGATGATTATCTCTAAAGAATTTTTAAAGGAAG-TAA
65 AAACTAAGCCTGATTTTCAGGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAAGGAAGCT-A
* * * * *
481567 AACCTATTTTTTAGGGGTTCCTTGATGTCAATTGAAAATGAAAGATTTTAA-AAACTAAGCTTTA
129 AGCCTAATTTTTAGGGGTTCCTTGATGACAACTGAAAATGAAAGATTTTAAGAAACTAAGCTTGA
* ** * *
481631 TTTTCAAGGTTTTCTTGATGAGTAAG----T--AACCATTAGTAAGTCTTTCAAGCATGATGCTT
194 TTTTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTT
*
481690 AAATCCTTCGCGTCATCTATAAGTCTTTCGAGCAA
259 AAATCCTTCGGGTCATCTATAAGTCTTTCGAGCAA
* * *
481725 GATGGTAAGTCCTTCAGACCATCCATAAGTCCATT-GGGTAGGATGTTTT----T-A------A-
1 GATGGTAAGTCCTTCGGACCATCCATAAGACC-TTCGGGCAGGATGTTTTCAAATGAGTTTTTAG
* * * * * *
481777 AAACTAAGCCTGATTTTTAGGGGTTTTTTAATGATTATCTTCAAAGAAGTTTTAAAGGAAACTAA
65 AAACTAAGCCTGATTTTCAGGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAAGGAAGCTAA
* * * *
481842 GCCTAATTTTTAGGGGTTCATTGATGACAACTTG-AGATGAAAAATTTT-AGAAATTAAGCTTGA
130 GCCTAATTTTTAGGGGTTCCTTGATGACAAC-TGAAAATGAAAGATTTTAAGAAACTAAGCTTGA
* * *
481905 TTTTCAAGGGTCTCTTGATGAGTAAGTCATTCGGACCAT-ATGTAAGTCTTTCGAGCATGATGCT
194 TTTTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCA-GTAAGTCTTTCGAGCATGATGCT
* *
481969 TAAATCTTTCGGGTCATCTATAAGTCTTCCGAGCAA
258 TAAATCCTTCGGGTCATCTATAAGTCTTTCGAGCAA
* * * * * * * ** * *
482005 AATAGTAAGTACATCGAACCATCTAAAAGAAATTCGGGCGGGATGTTTTCAAATAAG-TTTTAGA
1 GATGGTAAGTCCTTCGGACCATCCATAAGACCTTCGGGCAGGATGTTTTCAAATGAGTTTTTAGA
* * * * * *
482069 AACTATGCCTGATTTTCAAGGGTTTCTTGATGATTATATCCAAAGAATTTTTAAAGAAAACTAGG
66 AACTAAGCCTGATTTTCAGGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAAGGAAGCTAAG
* * * **
482134 CCTAATTCTT-GGGGTTTCC-TGATGACAACTGGAAACGAAATG-TTTTAAGAGTCTAAGCTTGA
131 CCTAATTTTTAGGGG-TTCCTTGATGACAACTGAAAATGAAA-GATTTTAAGAAACTAAGCTTGA
* * * * * *
482196 TTTTGAAGGTTTTCTTGATGACTAAGTCATTCGGGTCATCAGTAAGTCTTTCAAGCATGATGCTT
194 TTTTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTT
*
482261 AAATCCTTCGGGTCATCTATAAGTCTTT-TACGCAA
259 AAATCCTTCGGGTCATCTATAAGTCTTTCGA-GCAA
* * ** * *
482296 GATGATAAGTCCGTT-GGGCCATCCATAAGACCTTTAGGCAAGATGTATTT-AAATGTGTTTTTA
1 GATGGTAAGTCC-TTCGGACCATCCATAAGACCTTCGGGCAGGATGT-TTTCAAATGAGTTTTTA
* * * * *
482359 GAAACTAAGCCTAATATTCAGGGGTTTCTTGTTGATTATCTCCAAAGAACTTTTAAAGCAAGCTA
64 GAAACTAAGCCTGATTTTCAGGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAAGGAAGCTA
* * * * *
482424 AGACTAAATTTTAGTGGTTCCTT-ATTGACAACTGAAAACGAAAGATTTTAAGAAAATAAGCTTG
129 AGCCTAATTTTTAGGGGTTCCTTGA-TGACAACTGAAAATGAAAGATTTTAAGAAACTAAGCTTG
* * * * * * *
482488 ATTTTCAAGGTTTTCTTGATGAGTAATTCATTTGGGCTATTAGTAAGTCTTTCAAGCATGATGCT
193 ATTTTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCT
**
482553 TAAATCCTTCGGGTCATCTAT--GTCTTTATAGCAA
258 TAAATCCTTCGGGTCATCTATAAGTCTTTCGAGCAA
** * * * * * * * *
482587 GATGAAAAGTCCTTCGGGCCAACTATAGGACCTTCAGGCAGGATGTTTGCAAATGATTTTTTAAA
1 GATGGTAAGTCCTTCGGACCATCCATAAGACCTTCGGGCAGGATGTTTTCAAATGAGTTTTTAGA
* * * * * * *
482652 AACTAAGCCTGATTTTTAGGGGTTTCTTGAAGATCAACTCAAAATAATTTTTTAAAGGAATCTAA
66 AACTAAGCCTGATTTTCAGGGGTTTCTTGATGATTATCTCCAAAGAA-TTTTTAAAGGAAGCTAA
* * *
482717 GACTAATTTTTAGGGGTTCCTTGATGACAACTAAAAACGAAAGATTTTAAGAAACTAAGCTTGAT
130 GCCTAATTTTTAGGGGTTCCTTGATGACAACTGAAAATGAAAGATTTTAAGAAACTAAGCTTGAT
* *** * *
482782 TTTCAAGGGTTTTTTGATGAGTAAGTCCTTTTAGCCATTAGTAAGTCTTTCGAACATGATGCTTA
195 TTTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTA
*
482847 AATCCTTCGCGTCATCTATAAGTCTTTCGAGCAA
260 AATCCTTCGGGTCATCTATAAGTCTTTCGAGCAA
* * * * *
482881 AATGGTAAGTTCTTCGGACCATCCATAAGTCCTTTGGGTAGGATGTTTT
1 GATGGTAAGTCCTTCGGACCATCCATAAGACCTTCGGGCAGGATGTTTT
482930 TAGAAACTAA
Statistics
Matches: 4931, Mismatches: 775, Indels: 276
0.82 0.13 0.05
Matches are distributed among these distances:
273 1 0.00
274 129 0.03
275 4 0.00
278 1 0.00
279 3 0.00
280 300 0.06
281 39 0.01
282 101 0.02
283 59 0.01
284 10 0.00
285 18 0.00
286 146 0.03
287 9 0.00
288 20 0.00
289 490 0.10
290 323 0.07
291 919 0.19
292 1173 0.24
293 950 0.19
294 236 0.05
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (293 bp):
GATGGTAAGTCCTTCGGACCATCCATAAGACCTTCGGGCAGGATGTTTTCAAATGAGTTTTTAGA
AACTAAGCCTGATTTTCAGGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAAGGAAGCTAAG
CCTAATTTTTAGGGGTTCCTTGATGACAACTGAAAATGAAAGATTTTAAGAAACTAAGCTTGATT
TTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAA
ATCCTTCGGGTCATCTATAAGTCTTTCGAGCAA
Found at i:478720 original size:58 final size:56
Alignment explanation
Indices: 478591--478746 Score: 154
Period size: 58 Copynumber: 2.7 Consensus size: 56
478581 TCCAATGATT
* * * *
478591 TTTTA-GAAACTAAGCCTGATTTTTAGGGGTTTCTTGATGATCATCTCCAAAGAAT
1 TTTTAGGAAACTAAGCCTGATTTTTAGGGGTTTCTTGATGATCAACACAAAAGAAA
* * * *
478646 TTTTAATGGAAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGA-CAACAGAAAATGAAAGA
1 TTTT-A-GGAAACTAAGCCTGATTTTTAGGGGTTTCTTGATGATCAACACAAAA-G-AA-A
* * *
478706 TTTTAGGAAACTAAGCTTGATTTTCAAGGGTTTCTTGATGA
1 TTTTAGGAAACTAAGCCTGATTTTTAGGGGTTTCTTGATGA
478747 GTAAGTCCTA
Statistics
Matches: 81, Mismatches: 14, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
55 4 0.05
56 1 0.01
57 6 0.07
58 63 0.78
59 3 0.04
60 4 0.05
ACGTcount: A:0.31, C:0.12, G:0.21, T:0.36
Consensus pattern (56 bp):
TTTTAGGAAACTAAGCCTGATTTTTAGGGGTTTCTTGATGATCAACACAAAAGAAA
Found at i:482731 original size:59 final size:55
Alignment explanation
Indices: 482637--482753 Score: 144
Period size: 59 Copynumber: 2.1 Consensus size: 55
482627 GGATGTTTGC
* * * * *
482637 AAATGATTTTTTAAAAACTAAGCCTGATTTTTAGGGGTTTCTTGAAGATCAACTCA
1 AAATAATTTTTTAAAAACTAAGACTAATTTTTAGGGGTTCCTTGAAGA-CAACTAA
*
482693 AAATAATTTTTTAAAGGAATCTAAGACTAATTTTTAGGGGTTCCTTGATGACAACTAA
1 AAATAATTTTTTAAA--AA-CTAAGACTAATTTTTAGGGGTTCCTTGAAGACAACTAA
482751 AAA
1 AAA
482754 CGAAAGATTT
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
56 14 0.27
58 11 0.21
59 27 0.52
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (55 bp):
AAATAATTTTTTAAAAACTAAGACTAATTTTTAGGGGTTCCTTGAAGACAACTAA
Found at i:483146 original size:242 final size:248
Alignment explanation
Indices: 482702--483151 Score: 612
Period size: 242 Copynumber: 1.8 Consensus size: 248
482692 AAAATAATTT
* *
482702 TTTAAAGGAATCTAAGACTAATTTTTAGGGGTTCCTTGATGACAACTAAAAACGAAAGATTTTAA
1 TTTAAAGGAAACTAAGACAAATTTTTAGGGGTTCCTTGATGACAACTAAAAACGAAAGATTTTAA
* * * * * *
482767 GAAACTAAGCTTGATTTTCAAGGGTTTTTTGATGAGTAAGTCCTTTTAGCCATTAGTAAGTCTTT
66 GAAACTAAGCTTGATTTTCAAGAGTTTCTTGATCAGTAAGTCCTTTGAGCCATCAGTAAGTATTT
* *
482832 CGAACATGATGCTTAAATCCTTCGCGTCATCTATAAGTCTTTCGAGCAAAATGGTAAGTTCTTCG
131 CGAACATGATGATTAAATCATTCGCGTCATCTATAAGTCTTTCGAGCAAAATGGTAAGTTCTTCG
*
482897 GACCATCCATAAGTCCTTTGGGTAGGATGTTTTTAGAAACTAAGCAAAGAATA
196 AACCATCCATAAGTCCTTTGGGTAGGATGTTTTTAGAAACTAAGCAAAGAATA
* * *
482950 TTTAAAGGAAACTAAGCCAAATTTTTAGGGGTTCCTTGATGACAACTGAAAATG-AA-A-TTTAA
1 TTTAAAGGAAACTAAGACAAATTTTTAGGGGTTCCTTGATGACAACTAAAAACGAAAGATTTTAA
* * * *
483012 GAAACTAA-CTTGATTTTTAAGAG-TTCTTGATCCGT-AGTTCTTTGGGCCATCAGTAAGTATTT
66 GAAACTAAGCTTGATTTTCAAGAGTTTCTTGATCAGTAAGTCCTTTGAGCCATCAGTAAGTATTT
** *
483074 CGCGCATGATGATTAAATCATAT-GGGTCATCTATAAGTCTTTCGAG-AAAGATGGTAAG-TCGT
131 CGAACATGATGATTAAATCAT-TCGCGTCATCTATAAGTCTTTCGAGCAAA-ATGGTAAGTTC-T
*
483136 TCTAACCATCCATAAG
193 TCGAACCATCCATAAG
483152 ACTTTCGGAC
Statistics
Matches: 177, Mismatches: 22, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
241 5 0.03
242 84 0.47
243 10 0.06
244 13 0.07
245 13 0.07
246 1 0.01
247 2 0.01
248 49 0.28
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34
Consensus pattern (248 bp):
TTTAAAGGAAACTAAGACAAATTTTTAGGGGTTCCTTGATGACAACTAAAAACGAAAGATTTTAA
GAAACTAAGCTTGATTTTCAAGAGTTTCTTGATCAGTAAGTCCTTTGAGCCATCAGTAAGTATTT
CGAACATGATGATTAAATCATTCGCGTCATCTATAAGTCTTTCGAGCAAAATGGTAAGTTCTTCG
AACCATCCATAAGTCCTTTGGGTAGGATGTTTTTAGAAACTAAGCAAAGAATA
Found at i:483401 original size:292 final size:292
Alignment explanation
Indices: 482941--489492 Score: 5538
Period size: 292 Copynumber: 22.6 Consensus size: 292
482931 AGAAACTAAG
* * * *
482941 CAAAGAATATTTAAAGGAAACTAAGCCAAATTTTTAGGGGTTCCTTGATGACAACTGAAAATG-A
1 CAAAGAATTTTTAAATGAAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGACAACTGAAAATGAA
* * ** * *
483005 A-A-TTTAAGAAACTAA-CTTGATTTTTAAGAG-TTCTTGATCCGT-AGTTCTTTGGGCCATCAG
66 AGATTTTAAGAAACTAAGCTTGATTTTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCAG
* * * * * **
483065 TAAGTATTTCGCGCATGATGATTAAATCATAT-GGGTCATCTATAAGTCTTTCGAGAAAGATGGT
131 TAAGTCTTTCGAGCATGATGCTTAAATCCT-TCGGGTCATCTATAAGTCTTTCGAGCAAGATAAT
* ** * * * * * **
483129 AAGTCGTTCTAACCATCCATAAGACTTTCGGACAAGAAGATTTCAAATGAGCTTTAGAAACTATT
195 AAGTCCTTCGGACCATCCATAAGACCTTCGGGCAAGATGTTTTCAAATGAGTTTTAGAAACTAAG
* *
483194 CCAT-ATTTTTATGGGTTTCTTGATGATTGTCTC
260 CC-TGATTTTTAGGGGTTTCTTGATGATTATCTC
* * * *
483227 CAAAGAATTTTTAAATGAAG-TCAAACCTAATTTTTAGGGGTTCCTTGATGAAAACTAAAAAATA
1 CAAAGAATTTTTAAATGAAGCT-AAGCCTAATTTTTAGGGGTTCCTTGATGACAACT-GAAAATG
* * * * *
483291 AAAGATTTTAAGAAGCTAAGTTTGATTTTCAAAGGTTTC-TGATGAGTAATTCCTTCAGGCCATC
64 AAAGATTTTAAGAAACTAAGCTTGATTTTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATC
* *
483355 AGTAAGTCTTTCGAGGATGGTGCTTAAATCCTTCGGGTCATCTATAAGTCTTTCGAGCAAGATAA
129 AGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCTTTCGAGCAAGATAA
* * * * * *
483420 -AAGT-C--AGGGCAATCCAT-AGACCTTCGGGTAACATGTTTTCAAATTAGTTTTTTA-AAACT
194 TAAGTCCTTCGGACCATCCATAAGACCTTCGGGCAAGATGTTTTCAAATGAG--TTTTAGAAACT
** * * *
483479 ATTCCTGGTTTTTAGGAGTTTCTTAATGATTATCTC
257 AAGCCTGATTTTTAGGGGTTTCTTGATGATTATCTC
* * * * *
483515 TC-CAGAATTTTAAAAGGAAGCTAAGCCTAATTTTTAGGGGTTCCTCGATGACAAATGAAAATG-
1 -CAAAGAATTTTTAAATGAAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGACAACTGAAAATGA
*
483578 AA-ATTTTAAG-AACTAAGCTTGATTTTCAAGGGTTTCTTG-TGAGTAAGTGCTTCGGGCCATCA
65 AAGATTTTAAGAAACTAAGCTTGATTTTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCA
* ** * * *
483640 ATAAGTC-TTCGAGCATGATGCTTAAATCCTTTAGGTCATCTTTAAGTCTTTCGAGTAAGATGAT
130 GTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCTTTCGAGCAAGATAAT
* * * *
483704 AAGTCATTCGG-GCATACATAAGACCTTCAGGC---A-GTTTTCAAATGAGTTTTTAG-AA--AA
195 AAGTCCTTCGGACCATCCATAAGACCTTCGGGCAAGATGTTTTCAAATGAG-TTTTAGAAACTAA
*
483761 GCCTGA----T-GGGGTTTCTTGAT-ATT-TAT-
259 GCCTGATTTTTAGGGGTTTCTTGATGATTATCTC
* * * * *
483787 -AAAGAATTTTAAAAGGAAGCTAAGCCTAGTTTTTAAGGGTTTCTTGATGACAA-TGAAAATGAA
1 CAAAGAATTTTTAAATGAAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGACAACTGAAAATGAA
* *
483850 AGGTTTTAA-AAACTAAGCTTGATTTTCAATGGTTTCTTGACGACTAAGTCCTTCAGGCCATCAA
66 AGATTTTAAGAAACTAAGCTTGATTTTCAAGGGTTTCTT---GA-T--G------A-G-------
* * * *
483914 TAAGTCCTTCGGGCCATCAGTATGTCTTTCGAGCATGATGCTTAAATCTTTCGGGTCATTTTTAA
111 TAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAA
** * * *
483979 GTCTTTCGAGCAAGATGGTAAGCCCTTCGGACCATCCATAAGAACTTCGGGCATGATGTTTTCAA
176 GTCTTTCGAGCAAGATAATAAGTCCTTCGGACCATCCATAAGACCTTCGGGCAAGATGTTTTCAA
* * *
484044 ATGATTTTTTAGAAACTAAGCCTGATTTTAAGAGGTTTCTTGATGATTATCTC
241 ATGA-GTTTTAGAAACTAAGCCTGATTTTTAGGGGTTTCTTGATGATTATCTC
* * * * *
484097 CAAAGAATTTTGAAATGAAGCTAAGACTAATTTTTAGAGGATCCTTGATGACAACTGAAAACGAA
1 CAAAGAATTTTTAAATGAAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGACAACTGAAAATGAA
* * * * * * *
484162 ATATTTTAAGAAACTAAACTAT-ATTTTAAAAGGTTTCTTGAAGAGTAAGTCTTTCGGGCCATCG
66 AGATTTTAAGAAACTAAGCT-TGATTTTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCA
* * * *
484226 GTAAGTCTTTCAAGCATGATGCTTAAATCCATCAGGTCATCTAT--GTCTTTCAAGCAAGATAAT
130 GTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCTTTCGAGCAAGATAAT
* * ** * * * *
484289 AAGTCATTCGGGCCATCCATAACTCCTTCGGGTAAGATGTTTTCAAATTAATTTTTAGAATCTAA
195 AAGTCCTTCGGACCATCCATAAGACCTTCGGGCAAGATGTTTTCAAA-TGAGTTTTAGAAACTAA
*
484354 ACCTGATTTTTAGGGGTTTCTTGATGATTATCTC
259 GCCTGATTTTTAGGGGTTTCTTGATGATTATCTC
* * **
484388 AAAAGAA-TTTTAAATGAAGCTAAGCCTAATTTTTAGGGGTTCCTTAACAACAACTGAAAATGAA
1 CAAAGAATTTTTAAATGAAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGACAACTGAAAATGAA
484452 AGATTTTAAGAAACTAAGCTTGATTTTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCAG
66 AGATTTTAAGAAACTAAGCTTGATTTTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCAG
* * ** * * *
484517 TATGTCTTTCGAGCATGATGCTTAAATTCTTCACGTCATCTATAAGCCTTTCGAGCAAAAT-AGA
131 TAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCTTTCGAGCAAGATAATA
* * * *
484581 AG----TCGAACCATCCATAAGTCCTTTC-GGAAAAAT-TTTT-AAA-GAGTGTTTAGAAACTAA
196 AGTCCTTCGGACCATCCATAAGACC-TTCGGGCAAGATGTTTTCAAATGAGT-TTTAGAAACTAA
** * *
484638 GCCAT-ATTTCCAGGGG-TT-TT--TGATCATCTA
259 GCC-TGATTTTTAGGGGTTTCTTGATGATTATCTC
* * * * * * **
484668 CAAAAAAATTTTAAA-GAAATCTATGCCTAATTTTTAGGGGATCCTTGATGACAACT-TAAACCA
1 CAAAGAATTTTTAAATG-AAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGACAACTGAAAATGA
* *** ** *
484731 AATATTTTAAGAAACTTTTCAAGATTTTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCTATCA
65 AAGATTTTAAGAAACTAAGCTTGATTTTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCA
* * * * *
484796 GTAAGTTTTTCGAGGATGATGCTTAAATCCTTTGGGTCATGTATAAGTCTTTCGAGCGAGATAAT
130 GTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCTTTCGAGCAAGATAAT
* * * * * * *
484861 AATTCCTTCAGACCATCCGTAAAACCTTCGAGCAGGATGTTTTCAAATGACTTTTTAGAAACTAA
195 AAGTCCTTCGGACCATCCATAAGACCTTCGGGCAAGATGTTTTCAAATGA-GTTTTAGAAACTAA
* * * * *
484926 ACTTAATTTCCT--GGGTTTCTTGATGTTTATCTC
259 GCCTGATTT-TTAGGGGTTTCTTGATGATTATCTC
* * * * * * * * **
484959 CAAATAATTTTAAAATAAAG-TAAAGGCTAATTTTTAGGGTTTTCTTGATGATAACTAAAAAACA
1 CAAAGAATTTTTAAATGAAGCT-AAGCCTAATTTTTAGGGGTTCCTTGATGACAACT-GAAAATG
* * * *
485023 AAATATTTTACGAAACTAAGCTCT-ATTTTCAAGGGATTCTTGAAGAGTAAGTCCTTCGGGCCAT
64 AAAGATTTTAAGAAACTAAGCT-TGATTTTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCCAT
* * * * *
485087 CAGTAAGTATTTCGAGCATGATGCTTAAAT-TTATCAGGTCATCTGT--GTCTTTCGAACAAGAT
128 CAGTAAGTCTTTCGAGCATGATGCTTAAATCCT-TCGGGTCATCTATAAGTCTTTCGAGCAAGAT
* * ** * * * *
485149 -ATGAAGTCATTC-GAGCCATTCATAACTCCTTCAGGTAGGATGTTTTCAAATGAATTTTTAGAA
192 AAT-AAGTCCTTCGGA-CCATCCATAAGACCTTCGGGCAAGATGTTTTCAAATG-AGTTTTAGAA
*
485212 ACTAAGCCTTATTTTTAGGGGTTTCTTGATGATTATCTC
254 ACTAAGCCTGATTTTTAGGGGTTTCTTGATGATTATCTC
* * * * * * *
485251 CTAAGAATTTTTAAATGTAGTTATGTCTAATTTTTAGGGGTTCCCTGATGGCAACT-AAATATGA
1 CAAAGAATTTTTAAATGAAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGACAACTGAAA-ATGA
* * * *
485315 AAGATTTTAAGAACCTAAGCTTGATTTTCAATGGTTTCTTGATGAGTAAGTCATTCGGGCCAGCA
65 AAGATTTTAAGAAACTAAGCTTGATTTTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCA
* * * * *** *
485380 ATAAGTCTTTTGAGCACGATGCTTAAATTCTTTAAGTCATCTATAAGGCTTTCGAGCAAGATAAT
130 GTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCTTTCGAGCAAGATAAT
* * * * * *
485445 AAGTCCTTCGAACCATCCATAAGTCCTTCGAGCGAA-ATAATTTT--AATAAGTGTTTAAAAACT
195 AAGTCCTTCGGACCATCCATAAGACCTTCGGGC-AAGAT-GTTTTCAAATGAGT-TTTAGAAACT
* ** ** * *
485507 AAGCATGATTTCCATAGGTTTCTTAATGATTATATC
257 AAGCCTGATTTTTAGGGGTTTCTTGATGATTATCTC
* * * *
485543 CAAAGAATTTTTAAA-GAAAGCTAAGACTAATTTTTAAGGGTTCCTTGATGCCAACTGAAAACGA
1 CAAAGAATTTTTAAATG-AAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGACAACTGAAAATGA
* * * * *
485607 AATATTTTAAGAAACTATGCTAGATTTTCAAGGG-----T-ATGAGTAAGTCTTTCGGGCTATCA
65 AAGATTTTAAGAAACTAAGCTTGATTTTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCA
* * * * **
485666 GTAAGTCTTTCGAGGATGATGCTTAAATCCTTTGGGTCATGTATAAGTCTTTTGAG-AACGATGG
130 GTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCTTTCGAGCAA-GATAA
* * * * *
485730 TAAGTCCTTCAGACCATCCGTAAAACCTTCGGGCAGGATATTTTCAAATGAGTTTTTAGAAACTA
194 TAAGTCCTTCGGACCATCCATAAGACCTTCGGGCAAGATGTTTTCAAATGAG-TTTTAGAAACTA
* * * ** *
485795 AACTTAATTTCCA-AGGTTTCTTGATGATTATCTC
258 AGCCTGATTTTTAGGGGTTTCTTGATGATTATCTC
* * * * * *
485829 CAAAGAATTTTTAAAGGAAGCTATGCCTAATTTTTAAGGGTTCATTGATGACAACTGAAACTAAA
1 CAAAGAATTTTTAAATGAAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGACAACTGAAAATGAA
* * * * *
485894 AGATTTTAAGAAACTAAGCTTGATATTCAAGGGTTTCTTGGTGAGCAAGTCCTCCGGGTCATCAG
66 AGATTTTAAGAAACTAAGCTTGATTTTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCAG
* * * * * * *
485959 TAAGTCTTTGGAGCAAGATGCTTAAATCGTTCGAGTCATATATAAGTCTTTCGAGTAAGATGATA
131 TAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCTTTCGAGCAAGATAATA
** *
486024 AGTCCTTCGGGTCATCCATAAGACCTTCGAG-AAGGATGTTTTCAAATGAGTTCTTAGAAACTAA
196 AGTCCTTCGGACCATCCATAAGACCTTCGGGCAA-GATGTTTTCAAATGAGTT-TTAGAAACTAA
* * *
486088 GCCTGATTTTTAAGGTTTTCTTGATGATTATCTT
259 GCCTGATTTTTAGGGGTTTCTTGATGATTATCTC
* * * *
486122 TAAAGAATTTTTAAA-GAAAGCTAAGCCTAATTTTTA-AGGTTCCTTGATGAGAACTGAAAACGA
1 CAAAGAATTTTTAAATG-AAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGACAACTGAAAATGA
* * *
486185 AAGATATTAAAAAACTAAGCTTGATTTTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGTCATCA
65 AAGATTTTAAGAAACTAAGCTTGATTTTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCA
* * * * * *
486250 GAAAGTCCTTCAAGCATGATGCTTAAATCCATCAGGTCATCTATAAGTCTTTCGAGAAAGATAAT
130 GTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCTTTCGAGCAAGATAAT
* * ** * ** * * *
486315 AAGTCATTCCGG-CCATCCAGAACTCCTTCGGGTAAGATGTTTTCGAGTTAATTTTTATAAACTA
195 AAGTCCTT-CGGACCATCCATAAGACCTTCGGGCAAGATGTTTTC-AAATGAGTTTTAGAAACTA
* * * *
486379 ATCCTTATTTTCAAGGGGTTTCTTGATGATTATATC
258 AGCCTGATTTT-TAGGGGTTTCTTGATGATTATCTC
* * * *
486415 CAAAGAATTGTT-AATGAAAGTTAAGCCTAATTTTTAGGGTTTCCTTGATGACAAATGAAAATGA
1 CAAAGAATTTTTAAATG-AAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGACAACTGAAAATGA
* * * *
486479 AAGATTTTAAGAAACTAAGCTTGATTTTCAAGTGTTTCTTGACGAGTAAGTCCATT-TGACCATC
65 AAGATTTTAAGAAACTAAGCTTGATTTTCAAGGGTTTCTTGATGAGTAAGTCC-TTCGGGCCATC
* * * * **
486543 AATAAGTCTTTCGAGAATGATGCTTAAATCCTTCGGCTCAACTATAAGTCTTTCGAGCAAGATGG
129 AGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCTTTCGAGCAAGATAA
* * *
486608 TAAGTCCTTGGGACCATCCATAAGACCTTCAGGCAGGATG-TTTCAAATGAGTTTTTAGAAACTA
194 TAAGTCCTTCGGACCATCCATAAGACCTTCGGGCAAGATGTTTTCAAATGAG-TTTTAGAAACTA
* * *
486672 AGTCTGGA-TTTCAGGGGTTTCTTGATTATTATCTC
258 AGCCT-GATTTTTAGGGGTTTCTTGATGATTATCTC
486707 CAAAGAATTTTTAAA-GTAAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGACAACTGAAAATGA
1 CAAAGAATTTTTAAATG-AAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGACAACTGAAAATGA
* * * * * *
486771 AATATTTTAAGAAACTAAGCTTGATTTTCAAGAGTTTCTTGATCAGTAAGTCCTTTGGACCATTA
65 AAGATTTTAAGAAACTAAGCTTGATTTTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCA
* * * * * *
486836 GTAAGTCTTACGAGCATGATGTTTAAATCCATCAGGTCAT-T-TATGTCTTCCGAGCAAGATAAT
130 GTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCTTTCGAGCAAGATAAT
* ** * ** * *
486899 AAGTCATTCGGGTCATTCATAACTCCTTCGGGCAAGATGTTTTCAAATGAATTTTTAAAAACTAA
195 AAGTCCTTCGGACCATCCATAAGACCTTCGGGCAAGATGTTTTCAAATG-AGTTTTAGAAACTAA
486964 GCCTGATTTTTAGGGGTTTCTTGATGATTATCTC
259 GCCTGATTTTTAGGGGTTTCTTGATGATTATCTC
* * *
486998 TAAAGAATTTTTAAATGAAGTTAAGCCTAATTTTTAGGGGTTCCTTGATGGCAACTGAAAATGAA
1 CAAAGAATTTTTAAATGAAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGACAACTGAAAATGAA
* * **
487063 AGATTTTAAGAAACTAAGCTTGATTTTCTAGGGTTTCTTGATGAGTAGGTCCTTCGAACCATCAG
66 AGATTTTAAGAAACTAAGCTTGATTTTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCAG
* * ** * **
487128 TAAGTCTTTCGAGCATGATGCTTATATCCTTCGGGCCATCGGTAAGTCTTTCGAGCATGATGCTT
131 TAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCTTTCGAGCAAGAT-AAT
* ** * * * * * * *** * * *
487193 AAATCCTTCGGGTCATCTATAAGTCTTTTGAGCAAGATG--AT--AA-GTCCTTCAG--AC-CAT
195 AAGTCCTTCGGACCATCCATAAGACCTTCGGGCAAGATGTTTTCAAATGAGTTTTAGAAACTAAG
* *** * ** *
487250 CCGTAAAACCTT-CGGG---CAGGATG--T-T-TA
260 CC-T-GATTTTTAGGGGTTTCTTGATGATTATCTC
* * * * * * * * **
487277 CAAATG--TGTTTT-AA-GAAACTAAACTTTATTTTT-TGGGTTTCTTGATGATTATCTCCAAA-
1 CAAA-GAAT-TTTTAAATGAAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGA-CAACTGAAAAT
* ** * * * * * * * * **
487336 G-AA-TTTTTAAAGGAAGTTATGCCTAATTTTTAAAGGTTCCTTGATTA-CAA----TT---GAA
63 GAAAGATTTT-AA-GAAACTAAGCTTGATTTTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCC
* * ** * * ** **
487391 AACA-AAAGAT-TTT--A--A-GAAAC-T-AAT-CTT--GAT-AT-T-CAAGGGTTTCTTG---G
126 ATCAGTAAG-TCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCTTTCGAGCAAG
* ** * * * * * ** *
487438 TTAGCAAGTCC-TCCGAGCCAT-CAGTAAG-TCTTTGGAGCATGATGCTTAAATCCTTATAAGTC
190 ATAATAAGTCCTTCGGA-CCATCCA-TAAGACCTTCGG-GCAAGATG-TT---TTCAAATGAGT-
* *** * *** ** * * *
487500 TTTCGAGCAAGATGATAAGTCCTTTGTGCCATCCATAAGACCTTCGAGAAGGA-TATTTT
247 TTT--AG-AA-A--CTAAG-CC----TG--ATTTTTAGGGGTTTCTTG-ATGATTATCTC
* * ** * * *
487559 CAAATGAGTTTTT--A-GAAACTAAGGATGATTTTTA-GGGTTCCTTGATGAGAACTAAAAATGA
1 CAAA-GAATTTTTAAATGAAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGACAACTGAAAATGA
* * *
487620 AAGATTTTAAGAAACTAAGCTTGATTTTCAAGGGTTTCTTGATGAGTAAGTACTTCGAGACATCA
65 AAGATTTTAAGAAACTAAGCTTGATTTTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCA
* * ** * * *
487685 GTAAGTCTTTCGAGCATGGTGCTTAAATCCATCAAGTCATTTATAAGTCTTTCGAGTAAGATAAA
130 GTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCTTTCGAGCAAGATAAT
* * ** * *
487750 AAGTCATTCGGATCATCCATAACTCCTTCGGGTAAGATGTTTTCAAATGACTTTTTAGAAACTAA
195 AAGTCCTTCGGACCATCCATAAGACCTTCGGGCAAGATGTTTTCAAATGA-GTTTTAGAAACTAA
* *
487815 GCCTAATTTTCAGGGGTTTCTTGATGATTATCTC
259 GCCTGATTTTTAGGGGTTTCTTGATGATTATCTC
* * * * *
487849 CAAAGAATTTTTAAAGGAAGTTAAGCCTAATATTTAGGGTTTCCTTGATGAAAACAT-AAAATGA
1 CAAAGAATTTTTAAATGAAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGACAAC-TGAAAATGA
* * * * * *
487913 AAGATTTTAAGAAACTTAGTTTGATTTTCAAGTGTTTCTT-TTAGACTAAATCCTTCGGGCCATC
65 AAGATTTTAAGAAACTAAGCTTGATTTTCAAGGGTTTCTTGAT-GAGTAAGTCCTTCGGGCCATC
* * * * * * **
487977 AATAAGTCTTTCAAGCATGATGCTTAAATCCTTTGGTTCAACTATAAGTCTTTCTAGCAAGATGG
129 AGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCTTTCGAGCAAGATAA
* * * ** *** *
488042 TAAGTCCTTGGGA-CATCCGTAAGACGTTTAGGTGGGAT-TCTTTCAAATTAGTTTTTAGAAACT
194 TAAGTCCTTCGGACCATCCATAAGACCTTCGGGCAAGATGT-TTTCAAATGAG-TTTTAGAAACT
* * *
488105 AAGCATGGTTTTCAGGGGTTTCTTGATGATTATCTC
257 AAGCCTGATTTTTAGGGGTTTCTTGATGATTATCTC
** * ** *
488141 CAAAGAACCTCTAACGGAAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGACAACAGAAAATGAA
1 CAAAGAATTTTTAAATGAAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGACAACTGAAAATGAA
* * * * *
488206 AGATTTTAAGAAACTAAGCTTGATTTTCATGAGTTTCTTGACGAGTATGTCCTTCGGGCTATCAG
66 AGATTTTAAGAAACTAAGCTTGATTTTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCAG
* * * * * * **
488271 TAAGTCTTTCGAGCATGATACTTAAGTCCTTCGGTTCCTCTATAATTCTTTTGAGCAAGATGGTA
131 TAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCTTTCGAGCAAGATAATA
* * *
488336 AGTCCTTCAGACCATCTATAAGACCTTCGGGCAAGATGTTTTCAAATGAGTTTTTAGAAGCTAAG
196 AGTCCTTCGGACCATCCATAAGACCTTCGGGCAAGATGTTTTCAAATGAG-TTTTAGAAACTAAG
* * * *
488401 CCTGGTTTTCAGAGGTTTTTTGATGATTATCTC
260 CCTGATTTTTAGGGGTTTCTTGATGATTATCTC
* * * * * * **
488434 CAAATAAATTTTAAAGGAAGCTAAGCCTAA-TTTTAAGGGTTCCTTGATGATAACTAAAAACCAA
1 CAAAGAATTTTTAAATGAAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGACAACTGAAAATGAA
* * * * **
488498 AGATTATAAGAAACTAA-CTTCATTTTCAAGAGCTTCTTGATGAGTAAGTGTTTCGGGCCATCAG
66 AGATTTTAAGAAACTAAGCTTGATTTTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCAG
* * **
488562 TAAGTCTTTCGA-CGATGATGCGTAAATCCTTCGGGTCATCTATAAGTCTTTCGAGGAAGATGGT
131 TAAGTCTTTCGAGC-ATGATGCTTAAATCCTTCGGGTCATCTATAAGTCTTTCGAGCAAGATAAT
* * * * * *
488626 AAGCCCTTTGGACCATCCATAGGACCTT-GAGGTAGGATTTTTTCAAATGAGTGTTTAGAAACTA
195 AAGTCCTTCGGACCATCCATAAGACCTTCG-GGCAAGATGTTTTCAAATGAGT-TTTAGAAACTA
* * *
488690 AGCCTAATTTCTAGGGGTTTCTTGATGATTATCTG
258 AGCCTGATTTTTAGGGGTTTCTTGATGATTATCTC
* * *
488725 CAAAGAATTTTCAAA-GAAAGCTAAGCCTAATTTTTAGGGGTTCTTTGATGACAACTGAAAACGA
1 CAAAGAATTTTTAAATG-AAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGACAACTGAAAATGA
* * * *
488789 AAGATGTTAAGAAACTATGCTTGATTTTCAAGGGTTTCTTGATAAGTAAGTCCTTCGGGACATCA
65 AAGATTTTAAGAAACTAAGCTTGATTTTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCA
* * * * * **
488854 ATAAGTCTTTTGAGCATGATGATTAAATCC-TCGGGTCTTCTATTAGTCTTT-GAGCAAGATGGT
130 GTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCTTTCGAGCAAGATAAT
* * * * * *
488917 AAGTCCTTCAGACCATCCGTAAAACCTTCGGGCAGGATATTTTCAAATGAGTTTTTATAAACTAA
195 AAGTCCTTCGGACCATCCATAAGACCTTCGGGCAAGATGTTTTCAAATGAG-TTTTAGAAACTAA
* * * *
488982 ACTTAAGTTTTA-GGGTTTCTTGATGATTATCTC
259 GCCTGATTTTTAGGGGTTTCTTGATGATTATCTC
* * * * * * * *
489015 CAAAGAATTTTGAAATAAAGCAAAGCTTAATTTTTAGGGGTTCCTTGATAATAACTAAAAATAAA
1 CAAAGAATTTTTAAATGAAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGACAACTGAAAATGAA
* * *
489080 ATATTTTAAGAAACTAAGCTTGATTTTCAAGGGTTTCTTGAAGAGTAAATCCTTCGGGCCATCAG
66 AGATTTTAAGAAACTAAGCTTGATTTTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCAG
* * * * *
489145 TAACTCTTTCGAGTATAATGCTTAAAT-CTATCAGGTCATCTAT-A-TCTTTCTAGCAAGATAAT
131 TAAGTCTTTCGAGCATGATGCTTAAATCCT-TCGGGTCATCTATAAGTCTTTCGAGCAAGATAAT
* * * ** * *
489207 AAGTCATTCGGGCCATTCATAACTCCTTCGGGCAAGATGTTTTCAAATGAATTTATAAAAACTAA
195 AAGTCCTTCGGACCATCCATAAGACCTTCGGGCAAGATGTTTTCAAATGAGTTT-TAGAAACTAA
*
489272 GCCTGATTTTTAGGGGGTTCTTGATGATTATCTC
259 GCCTGATTTTTAGGGGTTTCTTGATGATTATCTC
* *
489306 TAAAGAATTTTTAAATGAAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGGCAACTGAAAATGAA
1 CAAAGAATTTTTAAATGAAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGACAACTGAAAATGAA
* * *
489371 AGATTTTAAGAAACTAAGCTTGATTTT-ATAGGTTTTCTTGATGAGTAGGTCCTTCGGACCATCA
66 AGATTTTAAGAAACTAAGCTTGATTTTCA-AGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCA
* * * **
489435 ATAAGTCTTTCGAGCATGATACTTAAATCCTTCGGGCCATCGGTAAGTCTTTCGAGCA
130 GTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCTTTCGAGCA
489493 TGATGCTTAA
Statistics
Matches: 5024, Mismatches: 977, Indels: 523
0.77 0.15 0.08
Matches are distributed among these distances:
249 8 0.00
250 19 0.00
251 2 0.00
254 8 0.00
256 2 0.00
257 1 0.00
258 1 0.00
259 3 0.00
260 4 0.00
261 1 0.00
262 5 0.00
263 1 0.00
265 1 0.00
266 1 0.00
267 6 0.00
268 4 0.00
269 1 0.00
270 10 0.00
271 51 0.01
272 33 0.01
273 4 0.00
274 11 0.00
275 18 0.00
276 39 0.01
277 21 0.00
278 5 0.00
279 11 0.00
280 135 0.03
281 51 0.01
282 73 0.01
283 80 0.02
284 84 0.02
285 45 0.01
286 274 0.05
287 107 0.02
288 116 0.02
289 32 0.01
290 465 0.09
291 1001 0.20
292 1123 0.22
293 675 0.13
294 262 0.05
295 20 0.00
296 4 0.00
297 5 0.00
298 4 0.00
299 21 0.00
300 5 0.00
301 4 0.00
302 10 0.00
303 9 0.00
304 9 0.00
306 2 0.00
307 33 0.01
308 14 0.00
309 2 0.00
310 2 0.00
311 45 0.01
312 16 0.00
313 24 0.00
314 1 0.00
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (292 bp):
CAAAGAATTTTTAAATGAAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGACAACTGAAAATGAA
AGATTTTAAGAAACTAAGCTTGATTTTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCAG
TAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCTTTCGAGCAAGATAATA
AGTCCTTCGGACCATCCATAAGACCTTCGGGCAAGATGTTTTCAAATGAGTTTTAGAAACTAAGC
CTGATTTTTAGGGGTTTCTTGATGATTATCTC
Found at i:483944 original size:20 final size:20
Alignment explanation
Indices: 483894--483932 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
483884 TCTTGACGAC
*
483894 TAAGTCCTTCAGGCCATCAA
1 TAAGTCCTTCGGGCCATCAA
483914 TAAGTCCTTCGGGCCATCA
1 TAAGTCCTTCGGGCCATCA
483933 GTATGTCTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.26
Consensus pattern (20 bp):
TAAGTCCTTCGGGCCATCAA
Found at i:485861 original size:870 final size:865
Alignment explanation
Indices: 482941--495377 Score: 4912
Period size: 878 Copynumber: 14.2 Consensus size: 865
482931 AGAAACTAAG
* * *
482941 CAAAGAATATTTAAAGGAAA-CTAAGCCAAATTTTTAGGGGTTCCTTGATGACAACTGAAAATG-
1 CAAAGAATTTTTAAA-GAAAGCTAAGCCTAATTTTTAAGGGTTCCTTGATGACAACTGAAAATGA
* ** **
483004 AA-A-TTTAAGAAACTAA-CTTGATTTTTAAGAGTTCTTGATCCGT-AGTTCTTT-GGGCCATCA
65 AAGATTTTAAGAAACTAAGCTTGA-TTTTCA-AG-TGGTGATGAGTAAG-TCTTTCGGGCCATCA
* * * * * *
483064 GTAAGTATTTCGCGCATGATGATTAAATCATATGGGTCATCTATAAGTCTTTCGAGAAAGATGGT
126 GTAAGTCTTTCGAGCATGATGCTTAAATCCTTTGGGTCATCTATAAGTCTTTCGAGCAAGATGGT
* * * * * * *
483129 AAGTCGTTCTA-ACCATCCATAAGACTTTCGGACAAGA-AGATTTCAAATGAG-CTTTAGAAACT
191 AAGTCCTTC-AGACCATCCATAAAACCTTCGGGCAGGATA-TTTTCAAATGAGTTTTTAGAAACT
** * ** * * *
483191 ATTC-CATATTTTTATGGGTTTCTTGATGATTGTCTCCAAAGAATTTTTAAATGAAG-TCAAACC
254 AAACTTA-ATTTCCAGGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAATGAAGCT-AAGCC
* * * * *
483254 TAATTTTTAGGGGTTCCTTGATGAAAACTAAAAAATAAAAGATTTTAAGAAGCTAAGTTTGATTT
317 TAATTTTTA-GGGTTCCTTGATGACAACT-AAAAACAAAATATTTTAAGAAACTAAGCTTGATTT
* * * * *
483319 TCAAAGGTTTC-TGATGAGTAATTCCTTCAGGCCATCAGTAAGTCTTTCGAGGATGGTGCTTAAA
380 TCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAA
* *
483383 TCCT-TCGGGTCATCTATAAGTCTTTCGAGCAAGATAA-AAGTCA---GGGCAATCCATAGA--C
445 T-CTATCAGGTCATCTAT--GTCTTTCGAGCAAGATAATAAGTCATTCGGGCCATCCATA-ACTC
* * * ** * * *
483441 CTTCGGGTAACATGTTTTCAAATTAGTTTTTTA-AAACTATTCCTGGTTTTTAGGAGTTTCTTAA
506 CTTCGGGTAAGATGTTTTCAAATGA-ATTTTTAGAAACTAAGCCTGATTTTTAGGGGTTTCTTGA
** * * * * *
483505 TGATTATCTCTCCAGAATTTTAAAAGGAAGCTAAGCCTAATTTTTAGGGGTTCCTCGATGACAAA
570 TGATTATCTCTAAAGAATTTTTAAATGAAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGGCAAC
*
483570 TGAAAATG-AA-ATTTTAAG-AACTAAGCTTGATTTTCAAGGGTTTCTTG-TGAGTAAGTGCTTC
635 TGAAAATGAAAGATTTTAAGAAACTAAGCTTGATTTTCAAGGGTTTCTTGATGAGTAAGTCCTTC
* *
483631 GGGCCATCAATAAGTC-TTCGAGCATGATGCTTAAATCCTTTAGGTCATCTTTAAGTCTTTCGAG
700 GGGCCATCAATAAGTCTTTCGAGCATGATGCTTAAATCCTTCAGGTCATCTATAAGTCTTTCGAG
* * ** * * * * * * * *
483695 TAAGATGATAAGTCATTCGGGCATACATAAGACCTTCAGGCAGT-TTTCAAATGAGT-TTTTAGA
765 CAAGATAATAAGTCATTCGACCATCCATAAGTCCTTC-GGAAATATTT-TAATAAGTGTTTAAAA
* **
483758 A--AAGCCTGA--T--GGGGTTTCTTGAT-ATT-TAT-
828 ACTAAGCATGATTTCCAAGGTTTCTTGATGATTATATC
* * * *
483787 -AAAGAATTTTAAAAGGAAGCTAAGCCTAGTTTTTAAGGGTTTCTTGATGACAA-TGAAAATGAA
1 CAAAGAATTTTTAAAGAAAGCTAAGCCTAATTTTTAAGGGTTCCTTGATGACAACTGAAAATGAA
*
483850 AGGTTTTAA-AAACTAAGCTTGATTTTCAA-TGGTTTCTTGACGACTAAGTCCTTCAGGCCATCA
66 AGATTTTAAGAAACTAAGCTTGATTTTCAAGTGG-----T---GA-T--G------A-G------
* * * *
483913 ATAAGTCCTTCGGGCCATCAGTATGTCTTTCGAGCATGATGCTTAAAT-CTTTCGGGTCATTTTT
107 -TAAGTCTTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTT-GGGTCATCTAT
* * * *
483977 AAGTCTTTCGAGCAAGATGGTAAGCCCTTCGGACCATCCATAAGAA-CTTCGGGCATGATGTTTT
170 AAGTCTTTCGAGCAAGATGGTAAGTCCTTCAGACCATCCATAA-AACCTTCGGGCAGGATATTTT
* * * * ** *
484041 CAAATGATTTTTTAGAAACTAAGCCTGATTTTAAGAGGTTTCTTGATGATTATCTCCAAAGAATT
234 CAAATGAGTTTTTAGAAACTAAACTTAATTTCCAGGGGTTTCTTGATGATTATCTCCAAAGAATT
* * * * *
484106 TTGAAATGAAGCTAAGACTAATTTTTAGAGGATCCTTGATGACAACTGAAAACGAAATATTTTAA
299 TTTAAATGAAGCTAAGCCTAATTTTTAG-GGTTCCTTGATGACAACTAAAAACAAAATATTTTAA
* * * * * *
484171 GAAACTAAACTAT-ATTTTAAAAGGTTTCTTGAAGAGTAAGTCTTTCGGGCCATCGGTAAGTCTT
363 GAAACTAAGCT-TGATTTTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCAGTAAGTCTT
* * *
484235 TCAAGCATGATGCTTAAATCCATCAGGTCATCTATGTCTTTCAAGCAAGATAATAAGTCATTCGG
427 TCGAGCATGATGCTTAAATCTATCAGGTCATCTATGTCTTTCGAGCAAGATAATAAGTCATTCGG
* * *
484300 GCCATCCATAACTCCTTCGGGTAAGATGTTTTCAAATTAATTTTTAGAATCTAAACCTGATTTTT
492 GCCATCCATAACTCCTTCGGGTAAGATGTTTTCAAATGAATTTTTAGAAACTAAGCCTGATTTTT
*
484365 AGGGGTTTCTTGATGATTATCTCAAAAGAA-TTTTAAATGAAGCTAAGCCTAATTTTTAGGGGTT
557 AGGGGTTTCTTGATGATTATCTCTAAAGAATTTTTAAATGAAGCTAAGCCTAATTTTTAGGGGTT
* ***
484429 CCTTAACAACAACTGAAAATGAAAGATTTTAAGAAACTAAGCTTGATTTTCAAGGGTTTCTTGAT
622 CCTTGATGGCAACTGAAAATGAAAGATTTTAAGAAACTAAGCTTGATTTTCAAGGGTTTCTTGAT
* * * *
484494 GAGTAAGTCCTTCGGGCCATCAGTATGTCTTTCGAGCATGATGCTTAAATTCTTCACGTCATCTA
687 GAGTAAGTCCTTCGGGCCATCAATAAGTCTTTCGAGCATGATGCTTAAATCCTTCAGGTCATCTA
* * * *
484559 TAAGCCTTTCGAGC-A-A-AAT-AG-AAGTCGAACCATCCATAAGTCCTTTCGGAAAAATTTTTA
752 TAAGTCTTTCGAGCAAGATAATAAGTCATTCG-ACCATCCATAAGTCC-TTCGGAAATA-TTTTA
* * * *
484619 A-AGAGTGTTTAGAAACTAAGCCAT-ATTTCCAGGGGTTT-TTGATCA-TCTA--
814 ATA-AGTGTTTAAAAACTAAG-CATGATTTCCA-AGGTTTCTTGATGATTATATC
* * * * * * * **
484668 CAAAAAAATTTTAAAGAAATCTATGCCTAATTTTTAGGGGATCCTTGATGACAACT-TAAACCAA
1 CAAAGAATTTTTAAAGAAAGCTAAGCCTAATTTTTAAGGGTTCCTTGATGACAACTGAAAATGAA
* *** ** * *
484732 ATATTTTAAGAAACTTTTCAAGATTTTCAAG-GGTTTCTTGATGAGTAAGTCCTTCGGGCTATCA
66 AGATTTTAAGAAACTAAGCTTGATTTTCAAGTGG-----TGATGAGTAAGTCTTTCGGGCCATCA
* * * * **
484796 GTAAGTTTTTCGAGGATGATGCTTAAATCCTTTGGGTCATGTATAAGTCTTTCGAGCGAGATAAT
126 GTAAGTCTTTCGAGCATGATGCTTAAATCCTTTGGGTCATCTATAAGTCTTTCGAGCAAGATGGT
* * * * *
484861 AATTCCTTCAGACCATCCGTAAAACCTTCGAGCAGGATGTTTTCAAATGACTTTTTAGAAACTAA
191 AAGTCCTTCAGACCATCCATAAAACCTTCGGGCAGGATATTTTCAAATGAGTTTTTAGAAACTAA
* * * * * *
484926 ACTTAATTTCC-TGGGTTTCTTGATGTTTATCTCCAAATAATTTTAAAATAAAG-TAAAGGCTAA
256 ACTTAATTTCCAGGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAATGAAGCT-AAGCCTAA
* * *
484989 TTTTTAGGGTTTTCTTGATGATAACTAAAAAACAAAATATTTTACGAAACTAAGCTCT-ATTTTC
320 TTTTTAGGG-TTCCTTGATGACAACT-AAAAACAAAATATTTTAAGAAACTAAGCT-TGATTTTC
* * * *
485053 AAGGGATTCTTGAAGAGTAAGTCCTTCGGGCCATCAGTAAGTATTTCGAGCATGATGCTTAAATT
382 AAGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATC
* * * * *
485118 TATCAGGTCATCTGTGTCTTTCGAACAAGAT-ATGAAGTCATTCGAGCCATTCATAACTCCTTCA
447 TATCAGGTCATCTATGTCTTTCGAGCAAGATAAT-AAGTCATTCGGGCCATCCATAACTCCTTCG
* *
485182 GGTAGGATGTTTTCAAATGAATTTTTAGAAACTAAGCCTTATTTTTAGGGGTTTCTTGATGATTA
511 GGTAAGATGTTTTCAAATGAATTTTTAGAAACTAAGCCTGATTTTTAGGGGTTTCTTGATGATTA
* * * * *
485247 TCTCCT-AAGAATTTTTAAATGTAGTTATGTCTAATTTTTAGGGGTTCCCTGATGGCAACT-AAA
576 TCT-CTAAAGAATTTTTAAATGAAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGGCAACTGAAA
* * *
485310 TATGAAAGATTTTAAGAACCTAAGCTTGATTTTCAATGGTTTCTTGATGAGTAAGTCATTCGGGC
640 -ATGAAAGATTTTAAGAAACTAAGCTTGATTTTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGC
* * * * * * *
485375 CAGCAATAAGTCTTTTGAGCACGATGCTTAAATTCTTTAAGTCATCTATAAGGCTTTCGAGCAAG
704 CATCAATAAGTCTTTCGAGCATGATGCTTAAATCCTTCAGGTCATCTATAAGTCTTTCGAGCAAG
*
485440 ATAATAAGTCCTTCGAACCATCCATAAGTCCTTCGAGCGAAATAATTTTAATAAGTGTTTAAAAA
769 ATAATAAGTCATTCG-ACCATCCATAAGTCCTTC--G-GAAAT-ATTTTAATAAGTGTTTAAAAA
*
485505 CTAAGCATGATTTCCATAGGTTTCTTAATGATTATATC
829 CTAAGCATGATTTCCA-AGGTTTCTTGATGATTATATC
* * *
485543 CAAAGAATTTTTAAAGAAAGCTAAGACTAATTTTTAAGGGTTCCTTGATGCCAACTGAAAACGAA
1 CAAAGAATTTTTAAAGAAAGCTAAGCCTAATTTTTAAGGGTTCCTTGATGACAACTGAAAATGAA
* * * *
485608 ATATTTTAAGAAACTATGCTAGATTTTCAAG-GGT-ATGAGTAAGTCTTTCGGGCTATCAGTAAG
66 AGATTTTAAGAAACTAAGCTTGATTTTCAAGTGGTGATGAGTAAGTCTTTCGGGCCATCAGTAAG
* * *
485671 TCTTTCGAGGATGATGCTTAAATCCTTTGGGTCATGTATAAGTCTTTTGAG-AACGATGGTAAGT
131 TCTTTCGAGCATGATGCTTAAATCCTTTGGGTCATCTATAAGTCTTTCGAGCAA-GATGGTAAGT
*
485735 CCTTCAGACCATCCGTAAAACCTTCGGGCAGGATATTTTCAAATGAGTTTTTAGAAACTAAACTT
195 CCTTCAGACCATCCATAAAACCTTCGGGCAGGATATTTTCAAATGAGTTTTTAGAAACTAAACTT
* * *
485800 AATTTCCA-AGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAAGGAAGCTATGCCTAATTTTT
260 AATTTCCAGGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAATGAAGCTAAGCCTAATTTTT
* * * *
485864 AAGGGTTCATTGATGACAACT-GAAACTAAAAGATTTTAAGAAACTAAGCTTGATATTCAAGGGT
325 -AGGGTTCCTTGATGACAACTAAAAAC-AAAATATTTTAAGAAACTAAGCTTGATTTTCAAGGGT
* * * * * *
485928 TTCTTGGTGAGCAAGTCCTCCGGGTCATCAGTAAGTCTTTGGAGCAAGATGCTTAAATCGT-TC-
388 TTCTTGATGAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATC-TATCA
* * * * * ** *
485991 GAGTCATATATAAGTCTTTCGAGTAAGATGATAAGTCCTTCGGGTCATCCATAAGACCTTCGAG-
452 G-GTCATCTAT--GTCTTTCGAGCAAGATAATAAGTCATTCGGGCCATCCATAACTCCTTCGGGT
* * * *
486055 AAGGATGTTTTCAAATGAGTTCTTAGAAACTAAGCCTGATTTTTAAGGTTTTCTTGATGATTATC
514 AA-GATGTTTTCAAATGAATTTTTAGAAACTAAGCCTGATTTTTAGGGGTTTCTTGATGATTATC
* *
486120 TTTAAAGAATTTTTAAA-GAAAGCTAAGCCTAATTTTTA-AGGTTCCTTGATGAG-AACTGAAAA
578 TCTAAAGAATTTTTAAATG-AAGCTAAGCCTAATTTTTAGGGGTTCCTTGATG-GCAACTGAAAA
* * * *
486182 CGAAAGATATTAAAAAACTAAGCTTGATTTTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGTCA
641 TGAAAGATTTTAAGAAACTAAGCTTGATTTTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCCA
* * * *
486247 TCAGA-AAGTCCTTCAAGCATGATGCTTAAATCCATCAGGTCATCTATAAGTCTTTCGAGAAAGA
706 TCA-ATAAGTCTTTCGAGCATGATGCTTAAATCCTTCAGGTCATCTATAAGTCTTTCGAGCAAGA
* * * * * * *
486311 TAATAAGTCATTCCGGCCATCCAGAACTCCTTCGGGTAAGATGTTTTCGAGTTAA-TTTTTATAA
770 TAATAAGTCATT-CGACCATCCATAAGTCCTTC-GG-AA-ATATTTT--A-ATAAGTGTTTAAAA
* * * *
486375 ACTAATCCTTATTTTCAAGGGGTTTCTTGATGATTATATC
828 ACTAAGCATGATTTCCAA--GGTTTCTTGATGATTATATC
* * * *
486415 CAAAGAATTGTTAATGAAAGTTAAGCCTAATTTTT-AGGGTTTCCTTGATGACAAATGAAAATGA
1 CAAAGAATTTTTAAAGAAAGCTAAGCCTAATTTTTAAGGG-TTCCTTGATGACAACTGAAAATGA
* * *
486479 AAGATTTTAAGAAACTAAGCTTGATTTTCAAGTGTTTCTTGACGAGTAAGTCCATTT--GACCAT
65 AAGATTTTAAGAAACTAAGCTTGATTTTCAAGTG----GTGATGAGTAAGT-C-TTTCGGGCCAT
* * * * *
486542 CAATAAGTCTTTCGAGAATGATGCTTAAATCCTTCGGCTCAACTATAAGTCTTTCGAGCAAGATG
124 CAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTTGGGTCATCTATAAGTCTTTCGAGCAAGATG
** * * *
486607 GTAAGTCCTTGGGACCATCCATAAGACCTTCAGGCAGGAT-GTTTCAAATGAGTTTTTAGAAACT
189 GTAAGTCCTTCAGACCATCCATAAAACCTTCGGGCAGGATATTTTCAAATGAGTTTTTAGAAACT
* ** *
486671 AAGTCTGGATTT-CAGGGGTTTCTTGATTATTATCTCCAAAGAATTTTTAAA-GTAAGCTAAGCC
254 AA-ACTTAATTTCCAGGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAATG-AAGCTAAGCC
* **
486734 TAATTTTTAGGGGTTCCTTGATGACAACTGAAAATGAAATATTTTAAGAAACTAAGCTTGATTTT
317 TAATTTTTA-GGGTTCCTTGATGACAACTAAAAACAAAATATTTTAAGAAACTAAGCTTGATTTT
* * * * * * *
486799 CAAGAGTTTCTTGATCAGTAAGTCCTTTGGACCATTAGTAAGTCTTACGAGCATGATGTTTAAAT
381 CAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAAT
* * * * *
486864 CCATCAGGTCATTTATGTCTTCCGAGCAAGATAATAAGTCATTCGGGTCATTCATAACTCCTTCG
446 CTATCAGGTCATCTATGTCTTTCGAGCAAGATAATAAGTCATTCGGGCCATCCATAACTCCTTCG
* *
486929 GGCAAGATGTTTTCAAATGAATTTTTAAAAACTAAGCCTGATTTTTAGGGGTTTCTTGATGATTA
511 GGTAAGATGTTTTCAAATGAATTTTTAGAAACTAAGCCTGATTTTTAGGGGTTTCTTGATGATTA
*
486994 TCTCTAAAGAATTTTTAAATGAAGTTAAGCCTAATTTTTAGGGGTTCCTTGATGGCAACTGAAAA
576 TCTCTAAAGAATTTTTAAATGAAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGGCAACTGAAAA
* * **
487059 TGAAAGATTTTAAGAAACTAAGCTTGATTTTCTAGGGTTTCTTGATGAGTAGGTCCTTCGAACCA
641 TGAAAGATTTTAAGAAACTAAGCTTGATTTTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCCA
* * * * ** *
487124 TCAGTAAGTCTTTCGAGCATGATGCTTATATCCTTCGGGCCATCGGTAAGTCTTTCGAGCATGAT
706 TCAATAAGTCTTTCGAGCATGATGCTTAAATCCTTCAGGTCATCTATAAGTCTTTCGAGCAAGAT
** * * ** * * * * * * ** * * * *
487189 GCTTAAATCCTTCGGGTCATCTATAAGTCTTTTGAGCAAGA---TGATAAGTCCTTCAGACCATC
771 -AATAAGTCATTC-GACCATCCATAAGTCCTTCG-GAAATATTTTAATAAGTGTTTAAAAAC-TA
* * ** * * **
487251 CGTAAAACCTT-C--GG--GCAGGATG-TT-TA--
832 AGCATGA-TTTCCAAGGTTTCTTGATGATTATATC
* * * * * * * **
487277 CAAATG--TGTTTT-AAGAAA-CTAAACTTTATTTTT-TGGGTTTCTTGATGATTATCTCCAAA-
1 CAAA-GAAT-TTTTAAAGAAAGCTAAGCCTAATTTTTAAGGGTTCCTTGATGA-CAACTGAAAAT
* ** * * * * * * **
487336 G-AA-TTTTTAAAGGAAGTTATGCCTAATTTTTAAAGGTTCCTTGATTACAATTGAAAACAAAAG
63 GAAAGATTTT-AA-GAAACTAAGCTTGA-TTTTCAA-G-----TG-GT--GA-TG---A-GTAAG
* ** * * * *
487399 AT-TTTAAGAAACTAATCTTGATATTCAAGGGTTTCTTGGTTAGCAAGTCCTCCGA-GCCATCAG
111 -TCTTT-CG-GGC-CATC-----AGT-AA--G--TC-T--TT--CGAG-CAT--GATG-C-T---
* * * * ** * *
487462 TAAGT-CTTTGGAG-CATGATGCTTA-AATCCTTATAAGTCTTTCGAGCAAGATGATAAGTCCTT
149 TAAATCCTTTGG-GTCAT-CT-ATAAGTCT-TT-----------CGAGCAAGATGGTAAGTCCTT
* * * * * *** *
487524 -TGTGCCATCCATAAGACCTTCGAGAAGGATATTTTCAAATGAGTTTTTAGAAACTAAGGATGAT
199 CAG-ACCATCCATAAAACCTTCGGGCAGGATATTTTCAAATGAGTTTTTAGAAACTAAACTTAAT
** * * * ** * * * *
487588 TTTTA-GGGTTCCTTGATGA-GAACTAAAAATGAAAGATTTT-AA-GAAACTAAGCTTGATTTTC
263 TTCCAGGGGTTTCTTGATGATTATCTCCAAA-G-AA-TTTTTAAATGAAGCTAAGCCTAATTTT-
* * * * * ** * * * *
487649 AAGGGTTTCTTGATG---AGT-------AAGTACTTCGAGACA-TCAG--TAAGTCTTTC--GAG
324 TAGGGTTCCTTGATGACAACTAAAAACAAAATATTTTAAGAAACTAAGCTTGA-T-TTTCAAGGG
* * ** * * ** * * * * **
487699 ---CATGGTGCTTAAATCCATCAAGTCATTTA-TAAGTCTTTCGAGTAAGAT--AAAAAGTC-AT
387 TTTCTTGATGAGTAAGTCCTTCGGGCCA-TCAGTAAGTCTTTCGAGCATGATGCTTAAA-TCTA-
** * * * * * ** * ** * *
487757 TC-GGATCATCCATAACTCCTTCGGGTAAGATGTTTTCAAATGACTTTTTAGAAACTAAGCC-TA
449 TCAGG-TCAT-C-TATGTCTTTCGAGCAAGA-----T--AATAAGTCATTCG-GGC-CATCCATA
* ** ** * *
487820 A-T-TTTCAGGGGTTTCTTGATGATTATCTCCAAA-GAATTTTTAAAGGAAGTTAAGCCTAATAT
502 ACTCCTTC--GGG--T-AAGATG-TT-T-T-CAAATGAATTTTT--A-GAAACTAAGCCTGATTT
* * * * * * ** * *
487882 TTA-GGGTTTCCTTGATGA-AAACAT-AAAATGAAAGATTTT-AA-GAAACTTAGTTTGATTTTC
555 TTAGGGGTTT-CTTGATGATTATC-TCTAAA-G-AA-TTTTTAAATGAAGCTAAGCCTAATTTTT
* * * * * **** **** ** *
487942 AAGTGTTTCTT-TTAG--ACT--AAATCCTTCG--GGCCATCAA-TAAG--T--CTTTCAA--G-
615 AGGGGTTCCTTGATGGCAACTGAAAAT-GAAAGATTTTAAGAAACTAAGCTTGATTTTCAAGGGT
* ** * * ** * * * * * * *
487992 --CATGATGCTTAAATCCTTTGGTTCAACTATAAGTCTTTCTAGCAAGATG-GTAAGTCCTT-GG
679 TTCTTGATGAGTAAGTCCTTCGGGCCATCAATAAGTCTTTCGAGCATGATGCTTAAATCCTTCAG
* ** * * *
488053 GACATCCGTAAGACGTTT--AG---G----T--G------G------GAT---TCTTTC---AA-
744 GTCATCTATAAGTC-TTTCGAGCAAGATAATAAGTCATTCGACCATCCATAAGTCCTTCGGAAAT
* * * * * *
488088 A---T--T-AGTTTTTAGAAACTAAGCATGGTTTTCAGGGGTTTCTTGATGATTATCTC
808 ATTTTAATAAGTGTTTAAAAACTAAGCATGATTTCCA-AGGTTTCTTGATGATTATATC
** * * * * *
488141 CAAAGAACCTCTAACGGAAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGACAACAGAAAATGAA
1 CAAAGAATTTTTAAAGAAAGCTAAGCCTAATTTTTAAGGGTTCCTTGATGACAACTGAAAATGAA
** * * * *
488206 AGATTTTAAGAAACTAAGCTTGATTTTCATGAGTTTCTTGACGAGTATGTCCTTCGGGCTATCAG
66 AGATTTTAAGAAACTAAGCTTGATTTTCA--AG--TGGTGATGAGTAAGTCTTTCGGGCCATCAG
* * * * * * *
488271 TAAGTCTTTCGAGCATGATACTTAAGTCCTTCGGTTCCTCTATAATTCTTTTGAGCAAGATGGTA
127 TAAGTCTTTCGAGCATGATGCTTAAATCCTTTGGGTCATCTATAAGTCTTTCGAGCAAGATGGTA
* * * * * *
488336 AGTCCTTCAGACCATCTATAAGACCTTCGGGCAAGATGTTTTCAAATGAGTTTTTAGAAGCTAAG
192 AGTCCTTCAGACCATCCATAAAACCTTCGGGCAGGATATTTTCAAATGAGTTTTTAGAAACTAAA
* ** * * * * * *
488401 CCTGGTTTTCAGAGGTTTTTTGATGATTATCTCCAAATAAATTTTAAAGGAAGCTAAGCCTAATT
257 CTTAATTTCCAGGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAATGAAGCTAAGCCTAATT
* * * * * * *
488466 TTAAGGGTTCCTTGATGATAACTAAAAACCAAAGATTATAAGAAACTAA-CTTCATTTTCAAGAG
322 TTTAGGGTTCCTTGATGACAACTAAAAACAAAATATTTTAAGAAACTAAGCTTGATTTTCAAGGG
* ** *
488530 CTTCTTGATGAGTAAGTGTTTCGGGCCATCAGTAAGTCTTTCGA-CGATGATGCGTAAATCCT-T
387 TTTCTTGATGAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGC-ATGATGCTTAAAT-CTAT
* * ** * * * * ***
488593 CGGGTCATCTATAAGTCTTTCGAGGAAGATGGTAAGCCCTTTGGACCATCCATAGGACCTT-GAG
450 CAGGTCATCTAT--GTCTTTCGAGCAAGATAATAAGTCATTCGGGCCATCCATAACTCCTTCG-G
* * * * * *
488657 GTAGGATTTTTTCAAATGAGTGTTTAGAAACTAAGCCTAATTTCTAGGGGTTTCTTGATGATTAT
512 GTAAGATGTTTTCAAATGAATTTTTAGAAACTAAGCCTGATTTTTAGGGGTTTCTTGATGATTAT
* * *
488722 CTGC-AAAGAATTTTCAAA-GAAAGCTAAGCCTAATTTTTAGGGGTTCTTTGATGACAACTGAAA
577 CT-CTAAAGAATTTTTAAATG-AAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGGCAACTGAAA
* * * * *
488785 ACGAAAGATGTTAAGAAACTATGCTTGATTTTCAAGGGTTTCTTGATAAGTAAGTCCTTCGGGAC
640 ATGAAAGATTTTAAGAAACTAAGCTTGATTTTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCC
* * * * *
488850 ATCAATAAGTCTTTTGAGCATGATGATTAAATCC-TCGGGTCTTCTATTAGTCTTT-GAGCAAGA
705 ATCAATAAGTCTTTCGAGCATGATGCTTAAATCCTTCAGGTCATCTATAAGTCTTTCGAGCAAGA
** * * ** * * * *
488913 TGGTAAGTCCTTCAGACCATCCGTAAAACCTTCGGGCAGGATATTTTCAAATGAGTTTTTATAAA
770 TAATAAGTCATTC-GACCATCCATAAGTCCTTC-GG-A-AATATTTT--AATAAGTGTTTAAAAA
* * * * * *
488978 CTAAACTTAAGTTT-TAGGGTTTCTTGATGATTATCTC
829 CTAAGCATGA-TTTCCAAGGTTTCTTGATGATTATATC
* * * * * * * * *
489015 CAAAGAATTTTGAAATAAAGCAAAGCTTAATTTTTAGGGGTTCCTTGATAATAACTAAAAATAAA
1 CAAAGAATTTTTAAAGAAAGCTAAGCCTAATTTTTAAGGGTTCCTTGATGACAACTGAAAATGAA
* * * *
489080 ATATTTTAAGAAACTAAGCTTGATTTTCAAG-GGTTTCTTGAAGAGTAAATCCTTCGGGCCATCA
66 AGATTTTAAGAAACTAAGCTTGATTTTCAAGTGG-----TGATGAGTAAGTCTTTCGGGCCATCA
* * * ** * **
489144 GTAACTCTTTCGAGTATAATGCTTAAAT-CTATCAGGTCATCTAT-A-TCTTTCTAGCAAGATAA
126 GTAAGTCTTTCGAGCATGATGCTTAAATCCT-TTGGGTCATCTATAAGTCTTTCGAGCAAGATGG
* * * * ** * * * * *
489206 TAAGTCATTCGGGCCATTCATAACTCCTTCGGGCAAGATGTTTTCAAATGAATTTATAAAAACTA
190 TAAGTCCTTCAGACCATCCATAAAACCTTCGGGCAGGATATTTTCAAATGAGTTTTTAGAAACTA
* * * ** * *
489271 AGCCTGATTTTTAGGGGGTTCTTGATGATTATCTCTAAAGAATTTTTAAATGAAGCTAAGCCTAA
255 AACTTAATTTCCAGGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAATGAAGCTAAGCCTAA
* * ** *
489336 TTTTTAGGGGTTCCTTGATGGCAACTGAAAATGAAAGATTTTAAGAAACTAAGCTTGATTTT-AT
320 TTTTTA-GGGTTCCTTGATGACAACTAAAAACAAAATATTTTAAGAAACTAAGCTTGATTTTCA-
* * * * *
489400 AGGTTTTCTTGATGAGTAGGTCCTTCGGACCATCAATAAGTCTTTCGAGCATGATACTTAAATCC
383 AGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAAT-C
* * * * ** * * * * * * *
489465 T-TCGGGCCATCGGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGAGTCATCTATAAGTCTTT
447 TATCAGGTCATC--TATGTCTTTCGAGCAAGAT-AATAAGTCATTCGGGCCATCCATAACTCCTT
* * * * * * * * * *** * **
489529 TGAGAAAGATG--AT--AA-GTA-CTTTAG-ACCT--TCCGTAAAACCTT-CGGG---CAGGATG
509 CGGGTAAGATGTTTTCAAATGAATTTTTAGAAACTAAGCC-T-GATTTTTAGGGGTTTCTTGATG
* ** * * * * * ** *
489581 -TT-T-AC-AAATGTGTTTTT--A-GAATCTAAACTTGATTTTTA-GGGTAT-TTTGATGATTAT
572 ATTATCTCTAAA-GAATTTTTAAATGAAGCTAAGCCTAATTTTTAGGGGT-TCCTTGATG-GCAA
* * * * * * * *
489637 CT-ACAAA-G-AA-TTTTTAAAGGAAACTATGCTTAATTTTTAAGGGATCCTTGATGA-CAACTG
634 CTGA-AAATGAAAGATTTT-AA-GAAACTAAGCTTGATTTTCAAGGGTTTCTTGATGAGTAAGT-
**** ** ** * * ** *
489697 AAAACGAAAGATTTTCAAAAACTAAG-CTTGAAATTCAAGGCTTTCTTAG-TGAGCAATTCCTTC
695 CCTTCG---G---GCCATCAA-TAAGTC-T----TTCGA-GC-ATGAT-GCTTA--AA-TCCTTC
* * * * ** * * * * *
489760 GGGCCATC-AGTAAGTCTTTGGAGCATGATGCTTAAATC-CTCGGAGTCATCTATAAGTCTTTCA
742 AGGTCATCTA-TAAGTCTTTCGAGCAAGAT-AATAAGTCATTC-GA-CCATCCATAAGTCCTTC-
* * * * ** **** * ** * * *
489823 AGCAAGA---TGATAAGTCCTT-CGGGCCATCCATAAGACCTTCGAGAAG------GATG-TT-T
802 GGAAATATTTTAATAAGTGTTTAAAAACTAAGCAT--GA-TTTCCA-AGGTTTCTTGATGATTAT
489876 -T-
863 ATC
* * * * * * * * **
489877 CAAATGAGTTTTT-TAGAAA-CTAAGCCTGATTTTCAAGGTTTTCTTGATGATTATCTCTAAA-G
1 CAAA-GAATTTTTAAAGAAAGCTAAGCCTAATTTTTAAGGGTTCCTTGATGA-CAACTGAAAATG
* * * * * * ** * **** ****
489939 -AA-TTTTTAAAAGAATCTAAGCCTAATTTTTAGGGTTCCTTGATGAG-AACTGAAAACGAAAGA
64 AAAGATTTT--AAGAAACTAAGCTTGATTTTCA-AG-T-GGTGATGAGTAAGT-CTTTCGGGCCA
** **** * * * * *** ** * * * *
490001 T-TTTAAG-AAACCAAGCTTGAT-TTTCAAGGATTT-CTTCAT-GAGTAATTCCTTCGAGC--CA
123 TCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTTGGGTCATCTA-TAAGTCTTTCGAGCAAGA
* * * * * * * * * * * * *
490059 TCAGTAAGTCTTTGA-AGCATGGTGCTTAAATCCAT----CAAGTTA-TTT---ATAAGTCTTTC
187 T-GGTAAGTCCTTCAGACCA---TCCATAAAACCTTCGGGCAGGATATTTTCAAATGAGTTTTTA
* * * ** * *
490115 GTAAGA-TAAAAATTCA-TT-CAGGACATGCATAACACCTTCGGGTAAGATGT-T-TTCAAATGA
248 G-AA-ACT-AAACTTAATTTCCAGG----G-GT------TTCTTG-ATGAT-TATCTCCAAA-GA
* * * * ** * *** ** *
490175 CTTTTT--A-GAAACTAAACCTAATTTTCAGGGGTTTATAGATGATTGTCT-CCAA-AGAAT-TT
296 ATTTTTAAATGAAGCTAAGCCTAATTTTTA-GGGTTCCTTGATGA-CAACTAAAAACAAAATATT
* * * * * **** * ** **
490234 TTAAAGGAATCTAAGCCTAATTTT-TAGGGTTTCCTTGATGA-CACATGAAAAT-GAGAGAT-TT
359 TT-AA-GAAACTAAGCTTGATTTTCAAGGGTTT-CTTGATGAGTA-A-GTCCTTCGGGCCATCAG
**** * * * * * * ** * * * *
490295 TAAGAAACT-AAGCTTGAT-TTTCAAGTGTTTCTTG-CAGACTAAGTCCTTT-GGGC--CATCAA
419 TAAGTCTTTCGAGCATGATGCTT-AAATCTATCAGGTCA-TCTATGT-CTTTCGAGCAAGAT-AA
* * * * * * * * * *
490354 TAAGT-ATTTCGAGCATGATGCTTAAATGCTTTGGTTCAACTACAAGTCTTTCGAGCAAGATGGT
480 TAAGTCA-TTCGGGC--CATCCATAACTCCTTCGGGT--A--AGATGT-TTT----CAA-AT-G-
** ** * * * * * * * *
490418 AAGTCCTT-GGGACCAATCGTAAGATGTTCAGGCGG------GTTG-TT-T-TC-AAATTAGTTT
530 AA-TTTTTAGAAACTAAGCCT--GATTTTTAGG-GGTTTCTTGATGATTATCTCTAAA-GAATTT
* * * ** * * * ** * ** *
490472 TT--A-GAAACTAAACATGGTTTTCAAGGGTTTCTTGATGATTATCTCTAAA-G-AA-CTTTTAA
590 TTAAATGAAGCTAAGCCTAATTTTTAGGGGTTCCTTGATG-GCAACTGAAAATGAAAGATTTT-A
* * * * * * * * * * **** *** **
490531 AGGCAGCTAACCCTAATTTTTAGGGGTTCCTTGATGA-CAACTGAAAACGAAAGATTTTAAGAAA
653 A-GAAACTAAGCTTGATTTTCAAGGGTTTCTTGATGAGTAAGT-CCTTCG---G---GCCATCAA
* * ** * * *
490595 CTAAGCTTGATTTTCAAGAGTTTCTTGATGAGTAAGTCCTTC-GGGCAATC-AGTAATTCTTTCG
710 -TAAG--T--CTTTC--GAG---CATGATGCTTAAATCCTTCAGGTC-ATCTA-TAAGTCTTTCG
* ** * * * * * * * ** **
490658 AGCATGATGCTTAAGTCCTTCGGTTCC-TCTATAATTCTTTTGAGAAAGA--TGGA-AAGTCCTT
763 AGCAAGAT-AATAAGTCATTC-G-ACCATCCATAAGTCCTTCG-GAAATATTTTAATAAGTGTTT
* * * ** * * **
490719 -CAGACCATCCATAAGACCTT-C--GG--GCAAGATG-TT-T-T-
824 AAAAACTAAGCAT--GA-TTTCCAAGGTTTCTTGATGATTATATC
* * ** * ** * * **
490754 CAAATGAGTTTTT--AG-AAGTTAAGCCT-GGTTTTCAGAGGTTTTTTGATGATTATCTCCAAA-
1 CAAA-GAATTTTTAAAGAAAGCTAAGCCTAATTTTTAAG-GGTTCCTTGATGA-CAACTGAAAAT
* * * *
490814 G-AA-TTTTTAAAGGAAGCTAAGCCTAATTTT-AAG-GGTTCCTTGATGACAACTAAAAACCAAA
63 GAAAGATTTT-AA-GAAACTAAGCTTGATTTTCAAGTGG-----TGATG---------------A
* * *
490875 GATTATAAGAAACTAACTTCATTTTCAAGAGTTTCTTGATGAGTAAGTCCTTCAGGCCATCAGTA
106 G----TAAG---------TC--TTTC--G-G--GC--CATCAGTAAGT-CTT-------TC-G--
* *
490940 AGTCTTTCGACGATGATGCTTAAATCCTTTAGGTCATCTATAAGTCTTTCAAGCAAGATGGTAAG
138 A-------G-C-ATGATGCTTAAATCCTTTGGGTCATCTATAAGTCTTTCGAGCAAGATGGTAAG
* * * ** *
491005 CCCTT-AGGACCATCCATAAGACCTTCAGTTAGGATATTTTCAAATGAGTATTTAGAAAC-AAAG
194 TCCTTCA-GACCATCCATAAAACCTTCGGGCAGGATATTTTCAAATGAGTTTTTAGAAACTAAA-
* * *
491068 CCTAATTTCCAGGGGTTTCTTGATTATTATCTGCAAAGAATTTTTAAA-GAAAGCTAAGCCTAAT
257 CTTAATTTCCAGGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAATG-AAGCTAAGCCTAAT
* * * ** * * *
491132 TTTTAGGGGTTCCTTGATGATAACTGAAAACGAAGGATTTTAAGAAACTATGCTAGACTTTCAAG
321 TTTTA-GGGTTCCTTGATGACAACTAAAAACAAAATATTTTAAGAAACTAAGCTTGATTTTCAAG
* ** * *
491197 GGTTTCTTGATGAGTAAGTCCATCGGGAAATCAATAAGTCTTTCGAGCATGATGATTAAATCCT-
385 GGTTTCTTGATGAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAAT-CTA
* * ** * * * * **
491261 TCAGGTCTTCTATTAGTCTTTCGAGTAAGATGGTAAGTCCTTCAGACCATCCGTAAAACCTTCGG
449 TCAGGTCATCTA-T-GTCTTTCGAGCAAGATAATAAGTCATTCGGGCCATCCATAACTCCTTCGG
* * * * * * * * *
491326 GCAGGATATTTTCAAATGAGTTTTTATAAACTAAACTTAAGTTTTA-GGGTTTCTTGATGATTAT
512 GTAAGATGTTTTCAAATGAATTTTTAGAAACTAAGCCTGATTTTTAGGGGTTTCTTGATGATTAT
* * * * ** *
491390 CTCCAAAGAATTTTGAAATAAAGCAAAGCCTAATTTTTAGGGGTTCCTTGATGATAACTAAAAAT
577 CTCTAAAGAATTTTTAAATGAAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGGCAACTGAAAAT
* * * * *
491455 AAAATATTTTAAGAAACTAAACTTGATTTTCAAGGGTTTCTTGAAGAGTAAATCCTTCGGGCCAT
642 GAAAGATTTTAAGAAACTAAGCTTGATTTTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCCAT
* * * * * *
491520 CAGTAACTCTTTCAAGTATAATGCTTAAAT-CTATCAGGTCATCTAT-A-TCTTTCTAGCAAGAT
707 CAATAAGTCTTTCGAGCATGATGCTTAAATCCT-TCAGGTCATCTATAAGTCTTTCGAGCAAGAT
* * * *
491582 AATAAGTCATTCGGGCCATTCATAACTCCTTCGGGCAAGATGTTTTCAAATGAA-T-TTATAAAA
771 AATAAGTCATTC-GACCATCCATAAGTCCTTC-GG-AA-ATATTTT--AAT-AAGTGTT-TAAAA
* ** * * *
491645 ACTAAGCCTGATTTTTAGGGGGTTCTTGATGATTATCTC
828 ACTAAGCATGATTTCCA-AGGTTTCTTGATGATTATATC
* * *
491684 TAAAGAATTTTTAAATG-AAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGGCAACTGAAAATGA
1 CAAAGAATTTTTAAA-GAAAGCTAAGCCTAATTTTTAAGGGTTCCTTGATGACAACTGAAAATGA
*
491748 AAGATTTTATGAAACTAAGCTTGATTTTATAGGTTTTCTTGATGAGTAGGTCCTTCGGACCATCA
65 AAGATTTTAAGAAACTAAGCTTG-------A--TTTTC---A--AGT-GG----T--G-------
* *
491813 ATAAGTCTTTCGAGCATGATACTTAAATCCTTCGGGCCATCGGTAAGTCTTTCGAGCATGATGCT
102 ATGAG----T--A--A-G-T-C-----T--TTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCT
* * * * * * * * *
491878 TAAATCCTTCGAGTCATCTATAAGTCTTTTGAGAAAGATGATAAGTACTTTAGACCTTCCGTAAA
149 TAAATCCTTTGGGTCATCTATAAGTCTTTCGAGCAAGATGGTAAGTCCTTCAGACCATCCATAAA
* * * * * **
491943 ACCTTCGGGCAGGATGTTTACAAATGTGTTTTTAGAATCTAAACTTGATTTTTA-GGGTATT-TT
214 ACCTTCGGGCAGGATATTTTCAAATGAGTTTTTAGAAACTAAACTTAATTTCCAGGGGT-TTCTT
* * * * * *
492006 GATGATTATCTACAAAGAATTTTTAAAGGAAACTATGCTTAATTTTTAAGGGATCCTTGATGACA
278 GATGATTATCTCCAAAGAATTTTTAAATGAAGCTAAGCCTAATTTTT-AGGGTTCCTTGATGACA
* * * ** * * *
492071 ACTGAAAACGAAAGATTTTCAA-AAACTAAGCTTGAAATTCAAGGCTTTCTT-AGTGAGCAATTC
342 ACTAAAAACAAAATATTTT-AAGAAACTAAGCTTGATTTTCAAGGGTTTCTTGA-TGAGTAAGTC
* * *
492134 CTTCGGGCCATCAGTAAGTCTTTGGAGCATGATGCTTAAATC-CTCGGAGTCATCTATAAGTCTT
405 CTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCTATCAG-GTCATCTAT--GTCTT
* * * ** *
492198 TCAAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGAG-AAGGATGTTTTCAAATGA
467 TCGAGCAAGATAATAAGTCATTCGGGCCATCCATAACTCCTTCGGGTAA-GATGTTTTCAAATGA
* * * *
492262 GTTTTTTAGAAACTAAGCCTGATTTTCAAGGTTTTCTTGATGATTATCTCTAAAGAATTTTTAAA
531 -ATTTTTAGAAACTAAGCCTGATTTTTAGGGGTTTCTTGATGATTATCTCTAAAGAATTTTTAAA
* * *
492327 AGAATCTAAGCCTAATTTTTA-GGGTTCCTTGATGAG-AACTGAAAACGAAAGATTTTAAGAAAC
595 TGAAGCTAAGCCTAATTTTTAGGGGTTCCTTGATG-GCAACTGAAAATGAAAGATTTTAAGAAAC
* * * * * *
492390 CAAGCTTGATTTTCAAGGATTTCTTCATGAGTAATTCCTTCGAGCCATCAGTAAGTCTTT-GAAG
659 TAAGCTTGATTTTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCAATAAGTCTTTCG-AG
* * * * * * * *
492454 CATGGTGCTTAAATCCATCAAGTTATTTATAAGTCTTTCGAGTAAGATAAAAATTCATTCAGGA-
723 CATGATGCTTAAATCCTTCAGGTCATCTATAAGTCTTTCGAGCAAGATAATAAGTCATTC--GAC
* ** * * * * * * * * *
492518 CATGCATAACACCTTCGGGTAAGATGTTTTCAAATGACTTTTTAGAAACTAAACCTAATTTTCAG
786 CATCCATAAGTCCTTC-GG-AA-ATATTTT--AATAAGTGTTTAAAAACTAAGCATGATTTCCA-
* * * * *
492583 GGGTTTATAGATGATTGTCTC
845 AGGTTTCTTGATGATTATATC
* *
492604 CAAAGAATTTTTAAAGGAATCTAAGCCTAATTTTT-AGGGTTTCCTTGATGAC-ACATGAAAATG
1 CAAAGAATTTTTAAAGAAAGCTAAGCCTAATTTTTAAGGG-TTCCTTGATGACAAC-TGAAAATG
* * **
492667 AGAGATTTTAAGAAACTAAGCTTGATTTTCAAGTGTTTCTTGCAGACTAAGTCCTTT-GGGCCAT
64 AAAGATTTTAAGAAACTAAGCTTGATTTTCAAGTG-GTGATG-AG--TAAGT-CTTTCGGGCCAT
* * * * * *
492731 CAATAAGTATTTCGAGCATGATGCTTAAATGCTTTGGTTCAACTACAAGTCTTTCGAGCAAGATG
124 CAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTTGGGTCATCTATAAGTCTTTCGAGCAAGATG
** * * ** * * * * *
492796 GTAAGTCCTTGGGACCAAT-CGTAAGATGTTCAGGCGGGTTGTTTTCAAATTAGTTTTTAGAAAC
189 GTAAGTCCTTCAGACC-ATCCATAAAACCTTCGGGCAGGATATTTTCAAATGAGTTTTTAGAAAC
* ** * * * * * * *
492860 TAAACATGGTTTTCAAGGGTTTCTTGATGATTATCTCTAAAGAACTTTTAAAGGCAGCTAACCCT
253 TAAACTTAATTTCCAGGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAATGAAGCTAAGCCT
* * *
492925 AATTTTTAGGGGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGAAACTAAGCTTGATTTTC
318 AATTTTTA-GGGTTCCTTGATGACAACTAAAAACAAAATATTTTAAGAAACTAAGCTTGATTTTC
* * * *
492990 AAGAGTTTCTTGATGAGTAAGTCCTTCGGGCAATCAGTAATTCTTTCGAGCATGATGCTTAAGTC
382 AAGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAAT-
* * * * * * * * **
493055 CT-TC-GGTTCCTCTATAATTCTTTTGAGAAAGATGGA-AAGTCCTTCAGACCATCCATAAGACC
446 CTATCAGG-TCATCTAT--GTCTTTCGAGCAAGAT-AATAAGTCATTCGGGCCATCCATAACTCC
* * ** * * * *
493117 TTCGGGCAAGATGTTTTCAAATGAGTTTTTAGAAGTTAAGCCTGGTTTTCAGAGGTTTTTTGATG
507 TTCGGGTAAGATGTTTTCAAATGAATTTTTAGAAACTAAGCCTGATTTTTAGGGGTTTCTTGATG
* * * * *
493182 ATTATCTCCAAAGAATTTTTAAAGGAAGCTAAGCCTAA-TTTTAAGGGTTCCTTGATGACAACTA
572 ATTATCTCTAAAGAATTTTTAAATGAAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGGCAACTG
** * * * *
493246 AAAACCAAAGATTATAAGAAACTAA-CTTCATTTTCAAGAGTTTCTTGATGAGTAAGTCCTTCAG
637 AAAATGAAAGATTTTAAGAAACTAAGCTTGATTTTCAAGGGTTTCTTGATGAGTAAGTCCTTCGG
* * * *
493310 GCCATCAGTAAGTCTTTCGAACGATGATGCTTAAATCCTTTAGGTCATCTATAAGTCTTTCAAGC
702 GCCATCAATAAGTCTTTCGAGC-ATGATGCTTAAATCCTTCAGGTCATCTATAAGTCTTTCGAGC
** * * * * * * * *
493375 AAGATGGTAAGCCCTTAGGACCATCCATAAGACCTTCAGTTAGGATATTTTCAAATGAGTATTTA
766 AAGATAATAAGTCATT-CGACCATCCATAAGTCCTTC-G-GA-AATATTTT--AATAAGTGTTTA
* * * * * * * *
493440 GAAACAAAGCCTAATTTCCAGGGGTTTCTTGATTATTATCTG
825 AAAACTAAGCATGATTTCCA-AGGTTTCTTGATGATTATATC
*
493482 CAAAGAATTTTTAAAGAAAGCTAAGCCTAATTTTT-AGGGTTCCTTGAT-A-AA-TGAAAACGAA
1 CAAAGAATTTTTAAAGAAAGCTAAGCCTAATTTTTAAGGGTTCCTTGATGACAACTGAAAATGAA
* * ** **
493543 GGATTTTAAG-AACT-AGC-TGACTTTCAAG-GGTTTCTTGATGAGTAAGTCCATCGGGAAATCA
66 AGATTTTAAGAAACTAAGCTTGATTTTCAAGTGG-----TGATGAGTAAGTCTTTCGGGCCATCA
* * ** * * *
493604 ATAAGTCTTTCGAGCATGATGATTAAATCCTTCAGGTCTTCTATTAGTCTTTCGAGTAAGATGGT
126 GTAAGTCTTTCGAGCATGATGCTTAAATCCTTTGGGTCATCTATAAGTCTTTCGAGCAAGATGGT
* * * *
493669 AAGTCCTTCAGACCATCCGTAAAACCTTCGGGCAGGATACTTTCAAATGATTTTTTAGAAATTAA
191 AAGTCCTTCAGACCATCCATAAAACCTTCGGGCAGGATATTTTCAAATGAGTTTTTAGAAACTAA
** * * *
493734 ACTTAATTTTTA-GGGTTTCTTGATGATTATTTCCAAAGAATTTTGAAATGAAGCAAAGCCTAAT
256 ACTTAATTTCCAGGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAATGAAGCTAAGCCTAAT
*
493798 TTTTAGGGGTTCCTTGATGACAACTAAAAACAAAATATTTTAAGAAACTAAGCTAGATTTTCAAG
321 TTTTA-GGGTTCCTTGATGACAACTAAAAACAAAATATTTTAAGAAACTAAGCTTGATTTTCAAG
* * *
493863 GGTTTCTTG-TAGAGTAAGTCCTTCGGGTCATCAGTAAGTCTTTCGTAAGTCTTTCGA-GTATTA
385 GGTTTCTTGAT-GAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCG--AG-C-AT-GATG-CTTA
* * * * *
493926 TACTTAGTTCTATCAGTTCATCTATATCTTTCTAGCAACATAATAAGTCATTCGGGCCATTCATA
443 -A---A--TCTATCAGGTCATCTATGTCTTTCGAGCAAGATAATAAGTCATTCGGGCCATCCATA
* * * *
493991 ACTCCTTCGGGCAAGATATTTTCAAATGAATTTTTAGAAACTAAGTCTGATTTTTAAGGGTTTCT
502 ACTCCTTCGGGTAAGATGTTTTCAAATGAATTTTTAGAAACTAAGCCTGATTTTTAGGGGTTTCT
* * *
494056 TGATAATTATCTCTAAAGAATTTTTATATGAAGTTAAGCCTAATTTTTAGGGGTTCCTTGATGGC
567 TGATGATTATCTCTAAAGAATTTTTAAATGAAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGGC
* *
494121 AACTAAAAATGAAAGATTTTAAGAAACTAAGCTTGATTTTCAAGGGTTTCTTGATCAGTAAGTCC
632 AACTGAAAATGAAAGATTTTAAGAAACTAAGCTTGATTTTCAAGGGTTTCTTGATGAGTAAGTCC
* * *
494186 TTCGGGCCATCAGTAAGTCTTAT-AAGCATGATGCTTAAATCCTTCAGGTCAACTATAAGTCTTT
697 TTCGGGCCATCAATAAGTCTT-TCGAGCATGATGCTTAAATCCTTCAGGTCATCTATAAGTCTTT
** * * * * * * * *
494250 CGAGCAAGATTGTAAGACCTTAGGACCATCCATAAGACCTTCATAGAGGATGTTTTCAAATGAGT
761 CGAGCAAGATAATAAGTCATT-CGACCATCCATAAGTCCTTC--GGA-AATATTTT--AATAAGT
* * *** *
494315 GTTTAGAAACTAAACATGATTTCTTGGGGTTTCTTGATGATTATCTC
820 GTTTAAAAACTAAGCATGATTTC-CAAGGTTTCTTGATGATTATATC
* * ** * * * *
494362 TAAAGAATTTTTAAAGAAAGCTAAGTCTAATTTTTTTGGGTTTCTTAATGTCAACTGAAAACGAA
1 CAAAGAATTTTTAAAGAAAGCTAAGCCTAATTTTTAAGGGTTCCTTGATGACAACTGAAAATGAA
* * ** * *
494427 AGATTTTAAGAAACTATGCTAGATTTTCAAAGGTTTCTTG-TGAGTAAGTCCTTCGGACCATCAG
66 AGATTTTAAGAAACTAAGCTTGATTTTC-AA-G--TGGTGATGAGTAAGTCTTTCGGGCCATCAG
*
494491 TAAGTCTTTC-ATGCATGATGCTTAAAT-CTTTCAGGTCATCTATAAGTCTTTCGAGCAAGATGG
127 TAAGTCTTTCGA-GCATGATGCTTAAATCCTTT-GGGTCATCTATAAGTCTTTCGAGCAAGATGG
** * ** * * *
494554 TAAGTGTTTCAGACCATCCGTAAAACCTTCATGCAGGATGTTTTCAAATGTGTTTATAGAAACTA
190 TAAGTCCTTCAGACCATCCATAAAACCTTCGGGCAGGATATTTTCAAATGAGTTTTTAGAAACTA
* * * * * * ** *
494619 AACTTCATTTTCA-GGGTTTCCTGATGATTACCTCCAAATAATTTTTAAAGGAAGAGATGCCTAA
255 AACTTAATTTCCAGGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAATGAAGCTAAGCCTAA
* * ** *
494683 TTTTTAGGGGTTCCTTGATGAGAACTGAAAATGAAATATATTAAGAAACTAAGCTTGATTTTCAA
320 TTTTTA-GGGTTCCTTGATGACAACTAAAAACAAAATATTTTAAGAAACTAAGCTTGATTTTCAA
* * * * * * *
494748 GAGTTTCTTGGT-ATGTAAGTCCTTC-GGTCATCAGAAAGTCCTTCAAGC---ATGCTTAAATCC
384 GGGTTTCTTGATGA-GTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCT
* * * ** *
494808 ATCA-G--ATGTAAGTCTTTCGAGCAAG-TTATAAGTCATTTTGGCCATCCA-CACTCCTTCGGG
448 ATCAGGTCATCTATGTCTTTCGAGCAAGATAATAAGTCATTCGGGCCATCCATAACTCCTTCGGG
* * * * * *
494868 TAAGATGTTTGCGAATGAATTTTTAGAAACAAAG-CTGATTTTCAGGGGTTTCATGATCATTATC
513 TAAGATGTTTTCAAATGAATTTTTAGAAACTAAGCCTGATTTTTAGGGGTTTCTTGATGATTATC
* * ** *
494932 -C-AAAGACTTTTTAAAGGAAGCTAAGCCTAATTTTTA-GGGTTCCTTGATGAAAAATGAAAATG
578 TCTAAAGAATTTTTAAATGAAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGGCAACTGAAAATG
* *
494994 AAAGATTTTAAGAAACTAAGCTTGATTTTCAAGTGTTTCTTGATCAGTAAGTCCATT-GGGCCAT
643 AAAGATTTTAAGAAACTAAGCTTGATTTTCAAGGGTTTCTTGATGAGTAAGTCC-TTCGGGCCAT
* * *
495058 CATTAAGTCTTTCAAGCATGATGCTTAAATCCTTC-GGTTCAACTATAAGTCTTTCGAGCAAGAT
707 CAATAAGTCTTTCGAGCATGATGCTTAAATCCTTCAGG-TCATCTATAAGTCTTTCGAGCAAGAT
** * * * * * * * * *
495122 TGTAAGTCCTTGGACCATCCATAAGACCTT-GTAGGATGTTTTCAAATTAGTTTTTAGAAACTAA
771 AATAAGTCATTCGACCATCCATAAGTCCTTCGGA-AATATTTT--AATAAGTGTTTAAAAACTAA
* * *
495186 GTC-TGATTTTCAGAGGTTTCTTGATAATTATCTC
833 G-CATGATTTCCA-AGGTTTCTTGATGATTATATC
*
495220 CAAAGAATTTTTAAATGAAA-CTAAGCCTAACTTTTT-AGGGTTCCTTGATGACAACTAAAAATG
1 CAAAGAATTTTTAAA-GAAAGCTAAGCCTAA-TTTTTAAGGGTTCCTTGATGACAACTGAAAATG
* * * ** *
495283 AAAGATTATAAGAAACCAA-CTTCATTTTCAAGTTTCTTGATGAGTAAGTCCTTCGGGCCATCAG
64 AAAGATTTTAAGAAACTAAGCTTGATTTTCAAG--TGGTGATGAGTAAGTCTTTCGGGCCATCAG
*
495347 TAAGTCTTTCGAGCACGATGCTTAAATCCTT
127 TAAGTCTTTCGAGCATGATGCTTAAATCCTT
495378 CAAGTCATCT
Statistics
Matches: 8850, Mismatches: 1911, Indels: 1649
0.71 0.15 0.13
Matches are distributed among these distances:
816 3 0.00
817 5 0.00
818 50 0.01
819 105 0.01
820 31 0.00
821 16 0.00
822 4 0.00
823 5 0.00
824 7 0.00
825 4 0.00
826 4 0.00
827 7 0.00
828 5 0.00
829 20 0.00
830 7 0.00
831 13 0.00
832 7 0.00
833 4 0.00
834 72 0.01
835 39 0.00
836 6 0.00
837 2 0.00
838 4 0.00
840 2 0.00
842 2 0.00
843 3 0.00
844 12 0.00
845 46 0.01
846 12 0.00
847 12 0.00
848 3 0.00
851 12 0.00
852 6 0.00
853 8 0.00
854 18 0.00
855 24 0.00
856 94 0.01
857 88 0.01
858 177 0.02
859 69 0.01
860 113 0.01
861 87 0.01
862 250 0.03
863 411 0.05
864 187 0.02
865 36 0.00
866 78 0.01
867 53 0.01
868 74 0.01
869 283 0.03
870 684 0.08
871 353 0.04
872 325 0.04
873 151 0.02
874 301 0.03
875 161 0.02
876 326 0.04
877 483 0.05
878 688 0.08
879 352 0.04
880 227 0.03
881 83 0.01
882 68 0.01
883 30 0.00
884 20 0.00
885 26 0.00
886 264 0.03
887 11 0.00
888 6 0.00
889 8 0.00
890 12 0.00
891 47 0.01
892 27 0.00
893 36 0.00
894 14 0.00
895 7 0.00
896 13 0.00
897 11 0.00
898 8 0.00
899 9 0.00
900 7 0.00
901 2 0.00
902 5 0.00
903 7 0.00
904 8 0.00
905 4 0.00
906 23 0.00
907 91 0.01
908 48 0.01
909 49 0.01
910 4 0.00
911 9 0.00
913 4 0.00
914 6 0.00
915 21 0.00
916 23 0.00
917 214 0.02
918 248 0.03
919 69 0.01
920 167 0.02
921 10 0.00
922 4 0.00
923 14 0.00
924 6 0.00
925 4 0.00
926 13 0.00
927 7 0.00
928 8 0.00
929 14 0.00
930 6 0.00
931 16 0.00
932 46 0.01
933 29 0.00
934 67 0.01
935 67 0.01
936 36 0.00
937 39 0.00
938 37 0.00
939 12 0.00
940 16 0.00
941 12 0.00
942 8 0.00
943 7 0.00
944 14 0.00
945 4 0.00
946 1 0.00
947 3 0.00
948 5 0.00
949 2 0.00
950 1 0.00
957 2 0.00
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (865 bp):
CAAAGAATTTTTAAAGAAAGCTAAGCCTAATTTTTAAGGGTTCCTTGATGACAACTGAAAATGAA
AGATTTTAAGAAACTAAGCTTGATTTTCAAGTGGTGATGAGTAAGTCTTTCGGGCCATCAGTAAG
TCTTTCGAGCATGATGCTTAAATCCTTTGGGTCATCTATAAGTCTTTCGAGCAAGATGGTAAGTC
CTTCAGACCATCCATAAAACCTTCGGGCAGGATATTTTCAAATGAGTTTTTAGAAACTAAACTTA
ATTTCCAGGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAATGAAGCTAAGCCTAATTTTTA
GGGTTCCTTGATGACAACTAAAAACAAAATATTTTAAGAAACTAAGCTTGATTTTCAAGGGTTTC
TTGATGAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCTATCAGGTC
ATCTATGTCTTTCGAGCAAGATAATAAGTCATTCGGGCCATCCATAACTCCTTCGGGTAAGATGT
TTTCAAATGAATTTTTAGAAACTAAGCCTGATTTTTAGGGGTTTCTTGATGATTATCTCTAAAGA
ATTTTTAAATGAAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGGCAACTGAAAATGAAAGATTT
TAAGAAACTAAGCTTGATTTTCAAGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCAATAAGTC
TTTCGAGCATGATGCTTAAATCCTTCAGGTCATCTATAAGTCTTTCGAGCAAGATAATAAGTCAT
TCGACCATCCATAAGTCCTTCGGAAATATTTTAATAAGTGTTTAAAAACTAAGCATGATTTCCAA
GGTTTCTTGATGATTATATC
Found at i:486013 original size:20 final size:21
Alignment explanation
Indices: 485988--486038 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
485978 GCTTAAATCG
*
485988 TTCGAGTCATAT-ATAAGTCT
1 TTCGAGTCATATGATAAGTCC
* *
486008 TTCGAGTAAGATGATAAGTCC
1 TTCGAGTCATATGATAAGTCC
*
486029 TTCGGGTCAT
1 TTCGAGTCAT
486039 CCATAAGACC
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
20 10 0.42
21 14 0.58
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.35
Consensus pattern (21 bp):
TTCGAGTCATATGATAAGTCC
Found at i:486631 original size:41 final size:42
Alignment explanation
Indices: 486536--486631 Score: 99
Period size: 42 Copynumber: 2.3 Consensus size: 42
486526 AAGTCCATTT
*
486536 GACCATCAATAAGTCTTTCGAGAATGATGCTTAAATCCTTCG
1 GACCATCAATAAGTCTTTCGAGAATGATGCGTAAATCCTTCG
* * * *
486578 G-CTCAACTATAAGTCTTTCGAGCAA-GATG-GTAAGTCCTTGG
1 GAC-CATCAATAAGTCTTTCGAG-AATGATGCGTAAATCCTTCG
*
486619 GACCATCCATAAG
1 GACCATCAATAAG
486632 ACCTTCAGGC
Statistics
Matches: 44, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
41 19 0.43
42 23 0.52
43 2 0.05
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (42 bp):
GACCATCAATAAGTCTTTCGAGAATGATGCGTAAATCCTTCG
Found at i:487203 original size:42 final size:42
Alignment explanation
Indices: 487112--487231 Score: 161
Period size: 42 Copynumber: 2.9 Consensus size: 42
487102 GATGAGTAGG
** *
487112 TCCTTCGAACCATCAGTAAGTCTTTCGAGCATGATGCTTATA
1 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAA
*
487154 TCCTTCGGGCCATCGGTAAGTCTTTCGAGCATGATGCTTAAA
1 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAA
* * *
487196 TCCTTCGGGTCATCTA-TAAGTCTTTTGAGCAAGATG
1 TCCTTCGGGCCATC-AGTAAGTCTTTCGAGCATGATG
487232 ATAAGTCCTT
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
42 69 1.00
ACGTcount: A:0.23, C:0.23, G:0.21, T:0.33
Consensus pattern (42 bp):
TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAA
Found at i:489482 original size:42 final size:42
Alignment explanation
Indices: 489420--489528 Score: 155
Period size: 42 Copynumber: 2.6 Consensus size: 42
489410 GATGAGTAGG
*
489420 TCCTTCGGACCATCAATAAGTCTTTCGAGCATGATACTTAAA
1 TCCTTCGGGCCATCAATAAGTCTTTCGAGCATGATACTTAAA
** *
489462 TCCTTCGGGCCATCGGTAAGTCTTTCGAGCATGATGCTTAAA
1 TCCTTCGGGCCATCAATAAGTCTTTCGAGCATGATACTTAAA
* * *
489504 TCCTTCGAGTCATCTATAAGTCTTT
1 TCCTTCGGGCCATCAATAAGTCTTT
489529 TGAGAAAGAT
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 59 1.00
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.34
Consensus pattern (42 bp):
TCCTTCGGGCCATCAATAAGTCTTTCGAGCATGATACTTAAA
Found at i:490061 original size:293 final size:292
Alignment explanation
Indices: 489462--508739 Score: 5912
Period size: 293 Copynumber: 64.4 Consensus size: 292
489452 GATACTTAAA
* *
489462 TCCTTCGGGCCATCGGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGAGTCATCTATAAGTCT
1 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCT
* * * ** * * * * * *
489527 TTTGAGAAAGATGATAAGTACTTTAGACCTTCCGTAAAACCTTCGGGCAGGATGTTTACAAATGT
66 TTCGAGCAAGATGATAAGTCCTTCGGACCATCCATAAGACCTTCGGGAAGGATGTTTTCAAATGA
* * * * *
489592 GTTTTTAGAATCTAAACTTGATTTT-TAGGGTATT-TTGATGATTATCTACAAAGAATTTTTAAA
131 GTTTTTAGAAACTAAGCCTGATTTTCAAGGGT-TTCTTGATGATTATCTCCAAAGAATTTTTAAA
* * * *
489655 GGAAACTATGCTTAATTTTTAAGGGATCCTTGATGACAACTGAAAACGAAAGATTTTCAA-AAAC
195 GGAAGCTAAGCCTAATTTTT-AGGGTTCCTTGATGACAACTGAAAACGAAAGATTTT-AAGAAAC
** * * *
489719 TAAGCTTGAAATTCAAGGCTTTCTT-AGTGAGCAAT
258 TAAGCTTGATTTTCAAGGATTTCTTGA-TGAGTAAG
*
489754 TCCTTCGGGCCATCAGTAAGTCTTTGGAGCATGATGCTTAAATCC-TCGGAGTCATCTATAAGTC
1 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGG-GTCATCTATAAGTC
* * *
489818 TTTCAAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCGAGAAGGATGTTTTCAAATG
65 TTTCGAGCAAGATGATAAGTCCTTCGGACCATCCATAAGACCTTCGGGAAGGATGTTTTCAAATG
* *
489883 AGTTTTTTAGAAACTAAGCCTGATTTTCAAGGTTTTCTTGATGATTATCTCTAAAGAATTTTTAA
130 AG-TTTTTAGAAACTAAGCCTGATTTTCAAGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAA
* * * *
489948 AAGAATCTAAGCCTAATTTTTAGGGTTCCTTGATGAGAACTGAAAACGAAAGATTTTAAGAAACC
194 AGGAAGCTAAGCCTAATTTTTAGGGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGAAACT
* *
490013 AAGCTTGATTTTCAAGGATTTCTTCATGAGTAAT
259 AAGCTTGATTTTCAAGGATTTCTTGATGAGTAAG
* * * ** * *
490047 TCCTTCGAGCCATCAGTAAGTCTTT-GAAGCATGGTGCTTAAATCCATCAAGTTATTTATAAGTC
1 TCCTTCGGGCCATCAGTAAGTCTTTCG-AGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTC
* * * * * * *
490111 TTTC--GTAAGATAAAAATTCATTCAGGA-CATGCATAACACCTTCGGGTAA-GATGTTTTCAAA
65 TTTCGAGCAAGATGATAAGTCCTTC-GGACCATCCATAAGACCTTCGGG-AAGGATGTTTTCAAA
* * * * * * *
490172 TGACTTTTTAGAAACTAAACCTAATTTTCAGGGGTTTATAGATGATTGTCTCCAAAGAATTTTTA
128 TGAGTTTTTAGAAACTAAGCCTGATTTTCAAGGGTTTCTTGATGATTATCTCCAAAGAATTTTTA
* * *
490237 AAGGAATCTAAGCCTAATTTTTAGGGTTTCCTTGATGAC-ACATGAAAATGAGAGATTTTAAGAA
193 AAGGAAGCTAAGCCTAATTTTTAGGG-TTCCTTGATGACAAC-TGAAAACGAAAGATTTTAAGAA
*
490301 ACTAAGCTTGATTTTCAAGTG-TTTCTTGCA-GACTAAG
256 ACTAAGCTTGATTTTCAAG-GATTTCTTG-ATGAGTAAG
* * * * * * * *
490338 TCCTTTGGGCCATCAATAAGTATTTCGAGCATGATGCTTAAATGCTTTGGTTCAACTACAAGTCT
1 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCT
* * * ** * ** * *
490403 TTCGAGCAAGATGGTAAGTCCTTGGGACCAAT-CGTAAGATGTTCAGGCGGGTTGTTTTCAAATT
66 TTCGAGCAAGATGATAAGTCCTTCGGACC-ATCCATAAGACCTTCGGGAAGGATGTTTTCAAATG
* * * * *
490467 AGTTTTTAGAAACTAAACATGGTTTTCAAGGGTTTCTTGATGATTATCTCTAAAGAACTTTTAAA
130 AGTTTTTAGAAACTAAGCCTGATTTTCAAGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAA
* *
490532 GGCAGCTAACCCTAATTTTTAGGGGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGAAACT
195 GGAAGCTAAGCCTAATTTTTA-GGGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGAAACT
490597 AAGCTTGATTTTCAA-GAGTTTCTTGATGAGTAAG
259 AAGCTTGATTTTCAAGGA-TTTCTTGATGAGTAAG
* * * * * *
490631 TCCTTCGGGCAATCAGTAATTCTTTCGAGCATGATGCTTAAGTCCTTCGGTTCCTCTATAATTCT
1 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCT
* * *
490696 TTTGAGAAAGATGGA-AAGTCCTTCAGACCATCCATAAGACCTTCGGGCAA-GATGTTTTCAAAT
66 TTCGAGCAAGAT-GATAAGTCCTTCGGACCATCCATAAGACCTTCGGG-AAGGATGTTTTCAAAT
** * *
490759 GAGTTTTTAGAAGTTAAGCCTGGTTTTC-AGAGGTTTTTTGATGATTATCTCCAAAGAATTTTTA
129 GAGTTTTTAGAAACTAAGCCTGATTTTCAAG-GGTTTCTTGATGATTATCTCCAAAGAATTTTTA
* * * *
490823 AAGGAAGCTAAGCCTAATTTTAAGGGTTCCTTGATGACAACTAAAAACCAAAGATTATAAGAAAC
193 AAGGAAGCTAAGCCTAATTTTTAGGGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGAAAC
*
490888 TAA-CTTCATTTTCAA-GAGTTTCTTGATGAGTAAG
258 TAAGCTTGATTTTCAAGGA-TTTCTTGATGAGTAAG
* **
490922 TCCTTCAGGCCATCAGTAAGTCTTTCGA-CGATGATGCTTAAATCCTTTAGGTCATCTATAAGTC
1 TCCTTCGGGCCATCAGTAAGTCTTTCGAGC-ATGATGCTTAAATCCTTCGGGTCATCTATAAGTC
* * * * * ** *
490986 TTTCAAGCAAGATGGTAAGCCCTTAGGACCATCCATAAGACCTTCAGTTAGGATATTTTCAAATG
65 TTTCGAGCAAGATGATAAGTCCTTCGGACCATCCATAAGACCTTCGGGAAGGATGTTTTCAAATG
* * * * * * *
491051 AGTATTTAGAAACAAAGCCTAATTTCCAGGGGTTTCTTGATTATTATCTGCAAAGAATTTTTAAA
130 AGTTTTTAGAAACTAAGCCTGATTTTCAAGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAA
* * *
491116 GAAAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGATAACTGAAAACGAAGGATTTTAAGAAACT
195 GGAAGCTAAGCCTAATTTTTA-GGGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGAAACT
* * * *
491181 ATGCTAGACTTTCAAGGGTTTCTTGATGAGTAAG
259 AAGCTTGATTTTCAAGGATTTCTTGATGAGTAAG
* ** * * * * *
491215 TCCATCGGGAAATCAATAAGTCTTTCGAGCATGATGATTAAATCCTTCAGGTCTTCTATTAGTCT
1 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCT
* * * * * * *
491280 TTCGAGTAAGATGGTAAGTCCTTCAGACCATCCGTAAAACCTTCGGGCAGGATATTTTCAAATGA
66 TTCGAGCAAGATGATAAGTCCTTCGGACCATCCATAAGACCTTCGGGAAGGATGTTTTCAAATGA
* * * * *
491345 GTTTTTATAAACTAAACTTAAGTTTT--AGGGTTTCTTGATGATTATCTCCAAAGAATTTTGAAA
131 GTTTTTAGAAACTAAGCCTGA-TTTTCAAGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAA
** * * * ** *
491408 TAAAGCAAAGCCTAATTTTTAGGGGTTCCTTGATGATAACTAAAAATAAAATATTTTAAGAAACT
195 GGAAGCTAAGCCTAATTTTTA-GGGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGAAACT
* * * *
491473 AAACTTGATTTTCAAGGGTTTCTTGAAGAGTAAA
259 AAGCTTGATTTTCAAGGATTTCTTGATGAGTAAG
* * * * *
491507 TCCTTCGGGCCATCAGTAACTCTTTCAAGTATAATGCTTAAAT-CTATCAGGTCATCTAT-A-TC
1 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCT-TCGGGTCATCTATAAGTC
* * * * * **
491569 TTTCTAGCAAGATAATAAGTCATTCGGGCCATTCATAACTCCTTCGGGCAA-GATGTTTTCAAAT
65 TTTCGAGCAAGATGATAAGTCCTTCGGACCATCCATAAGACCTTCGGG-AAGGATGTTTTCAAAT
* * * * * * *
491633 GAATTTATAAAAACTAAGCCTGATTTTTAGGGGGTTCTTGATGATTATCTCTAAAGAATTTTTAA
129 GAGTTTTTAGAAACTAAGCCTGATTTTCAAGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAA
* * * *
491698 ATGAAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGGCAACTGAAAATGAAAGATTTTATGAAAC
194 AGGAAGCTAAGCCTAATTTTTA-GGGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGAAAC
* *
491763 TAAGCTTGATTTT-ATAGGTTTTCTTGATGAGTAGG
258 TAAGCTTGATTTTCA-AGGATTTCTTGATGAGTAAG
* * * * **
491798 TCCTTCGGACCATCAATAAGTCTTTCGAGCATGATACTTAAATCCTTCGGGCCATCGGTAAGTCT
1 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCT
* * * * * * * * * * * *
491863 TTCGAGCATGATGCTTAAATCCTTC-GAGTCATCTATAAGTCTTTTGAGAAAGATG--AT-AAGT
66 TTCGAGCAAGATG-ATAAGTCCTTCGGA-CCATCCATAAGACCTTCGGGAAGGATGTTTTCAAAT
* * * * ** ** * **
491924 -A--CTTTAG-ACCT--TCCGTAAAACCTTC--GGG---CAGGATG--T-T-TACAAATGTGTTT
129 GAGTTTTTAGAAACTAAGCC-T--GATTTTCAAGGGTTTCTTGATGATTATCTCCAAA-GAATTT
* * * * * * * *
491974 TT--A-GAATCTAAACTTGATTTTTAGGGTAT-TTTGATGATTATCT-ACAAA-G-AA-TTTTTA
190 TTAAAGGAAGCTAAGCCTAATTTTTAGGGT-TCCTTGATGA-CAACTGA-AAACGAAAGATTTT-
* * * * * *
492031 AAGGAAACTATGCTTAATTTTTAAGGGA-TCCTTGATGA-CAAC
251 AA-GAAACTAAGCTTGATTTTCAA-GGATTTCTTGATGAGTAAG
**** * * ** * * * ** *
492073 TGAAAACGAAAGATTTTCAAAAACTAAG-CTTGAAATTCAAGGCTTTCTTAG-TGAGCAATTCCT
1 T-CCTTCG---G----GCCATCAGTAAGTC-T----TTCGA-GC-ATGAT-GCTTA--AA-TCCT
* * * * * * * * *
492136 TCGGGCCATC-AGTAAGTCTTTGGAGCATGATGCTTAAATCC-TCGGAGTCATCTATAAGTCTTT
47 TCGGGTCATCTA-TAAGTCTTTCGAGCAAGATG-ATAAGTCCTTCGGA-CCATCCATAAGACCTT
* * * * * *** * * **
492199 CAAGCAAGATGATAAGTCCTTCGGGCCATCCATAAGACCTTCG--A-GAAGGATG-TTTTCAAAT
109 C-GGGAAG--GAT--GT--TT----TCA--AATGAGTTTTTAGAAACTAAGCCTGATTTTC-AA-
* * * * * * * **
492260 GAGTTTTTTAGAAACTAAGCCTGATTTTCAAGGTTTTCTTGATGATTATCTCTAAA-GAATTTTT
159 GGGTTTCTT-G--A-T--G-ATTATCTCCAA--------AGA--ATT-T-T-TAAAGGAA---GC
*
492324 AAAAGAATCTAAGCCTAATTTTTAGGGTTCCTTGATGAGAACTGAAAACGAAAGATTTTAAGAAA
201 ---------TAAGCCTAATTTTTAGGGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGAAA
* * *
492389 CCAAGCTTGATTTTCAAGGATTTCTTCATGAGTAAT
257 CTAAGCTTGATTTTCAAGGATTTCTTGATGAGTAAG
* * * ** * *
492425 TCCTTCGAGCCATCAGTAAGTCTTT-GAAGCATGGTGCTTAAATCCATCAAGTTATTTATAAGTC
1 TCCTTCGGGCCATCAGTAAGTCTTTCG-AGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTC
* * * * * * *
492489 TTTCGAGTAAGATAAAAATTCATTCAGGA-CATGCATAACACCTTCGGGTAA-GATGTTTTCAAA
65 TTTCGAGCAAGATGATAAGTCCTTC-GGACCATCCATAAGACCTTCGGG-AAGGATGTTTTCAAA
* * * * * * *
492552 TGACTTTTTAGAAACTAAACCTAATTTTCAGGGGTTTATAGATGATTGTCTCCAAAGAATTTTTA
128 TGAGTTTTTAGAAACTAAGCCTGATTTTCAAGGGTTTCTTGATGATTATCTCCAAAGAATTTTTA
* * *
492617 AAGGAATCTAAGCCTAATTTTTAGGGTTTCCTTGATGAC-ACATGAAAATGAGAGATTTTAAGAA
193 AAGGAAGCTAAGCCTAATTTTTAGGG-TTCCTTGATGACAAC-TGAAAACGAAAGATTTTAAGAA
*
492681 ACTAAGCTTGATTTTCAAGTG-TTTCTTGCA-GACTAAG
256 ACTAAGCTTGATTTTCAAG-GATTTCTTG-ATGAGTAAG
* * * * * * * *
492718 TCCTTTGGGCCATCAATAAGTATTTCGAGCATGATGCTTAAATGCTTTGGTTCAACTACAAGTCT
1 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCT
* * * ** * ** * *
492783 TTCGAGCAAGATGGTAAGTCCTTGGGACCAAT-CGTAAGATGTTCAGGCGGGTTGTTTTCAAATT
66 TTCGAGCAAGATGATAAGTCCTTCGGACC-ATCCATAAGACCTTCGGGAAGGATGTTTTCAAATG
* * * * *
492847 AGTTTTTAGAAACTAAACATGGTTTTCAAGGGTTTCTTGATGATTATCTCTAAAGAACTTTTAAA
130 AGTTTTTAGAAACTAAGCCTGATTTTCAAGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAA
* *
492912 GGCAGCTAACCCTAATTTTTAGGGGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGAAACT
195 GGAAGCTAAGCCTAATTTTTA-GGGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGAAACT
492977 AAGCTTGATTTTCAA-GAGTTTCTTGATGAGTAAG
259 AAGCTTGATTTTCAAGGA-TTTCTTGATGAGTAAG
* * * * * *
493011 TCCTTCGGGCAATCAGTAATTCTTTCGAGCATGATGCTTAAGTCCTTCGGTTCCTCTATAATTCT
1 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCT
* * *
493076 TTTGAGAAAGATGGA-AAGTCCTTCAGACCATCCATAAGACCTTCGGGCAA-GATGTTTTCAAAT
66 TTCGAGCAAGAT-GATAAGTCCTTCGGACCATCCATAAGACCTTCGGG-AAGGATGTTTTCAAAT
** * *
493139 GAGTTTTTAGAAGTTAAGCCTGGTTTTC-AGAGGTTTTTTGATGATTATCTCCAAAGAATTTTTA
129 GAGTTTTTAGAAACTAAGCCTGATTTTCAAG-GGTTTCTTGATGATTATCTCCAAAGAATTTTTA
* * * *
493203 AAGGAAGCTAAGCCTAATTTTAAGGGTTCCTTGATGACAACTAAAAACCAAAGATTATAAGAAAC
193 AAGGAAGCTAAGCCTAATTTTTAGGGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGAAAC
*
493268 TAA-CTTCATTTTCAA-GAGTTTCTTGATGAGTAAG
258 TAAGCTTGATTTTCAAGGA-TTTCTTGATGAGTAAG
* * **
493302 TCCTTCAGGCCATCAGTAAGTCTTTCGAACGATGATGCTTAAATCCTTTAGGTCATCTATAAGTC
1 TCCTTCGGGCCATCAGTAAGTCTTTCGAGC-ATGATGCTTAAATCCTTCGGGTCATCTATAAGTC
* * * * * ** *
493367 TTTCAAGCAAGATGGTAAGCCCTTAGGACCATCCATAAGACCTTCAGTTAGGATATTTTCAAATG
65 TTTCGAGCAAGATGATAAGTCCTTCGGACCATCCATAAGACCTTCGGGAAGGATGTTTTCAAATG
* * * * * * *
493432 AGTATTTAGAAACAAAGCCTAATTTCCAGGGGTTTCTTGATTATTATCTGCAAAGAATTTTTAAA
130 AGTTTTTAGAAACTAAGCCTGATTTTCAAGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAA
* *
493497 GAAAGCTAAGCCTAATTTTTAGGGTTCCTTGAT-A-AA-TGAAAACGAAGGATTTTAAG-AACT-
195 GGAAGCTAAGCCTAATTTTTAGGGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGAAACTA
* *
493557 AGC-TGACTTTCAAGGGTTTCTTGATGAGTAAG
260 AGCTTGATTTTCAAGGATTTCTTGATGAGTAAG
* ** * * * * *
493589 TCCATCGGGAAATCAATAAGTCTTTCGAGCATGATGATTAAATCCTTCAGGTCTTCTATTAGTCT
1 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCT
* * * * * * **
493654 TTCGAGTAAGATGGTAAGTCCTTCAGACCATCCGTAAAACCTTCGGGCAGGATACTTTCAAATGA
66 TTCGAGCAAGATGATAAGTCCTTCGGACCATCCATAAGACCTTCGGGAAGGATGTTTTCAAATGA
* * * * * * * * *
493719 TTTTTTAGAAATTAAACTTAATTTT-TAGGGTTTCTTGATGATTATTTCCAAAGAATTTTGAAAT
131 GTTTTTAGAAACTAAGCCTGATTTTCAAGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAAG
* * * *
493783 GAAGCAAAGCCTAATTTTTAGGGGTTCCTTGATGACAACTAAAAACAAAATATTTTAAGAAACTA
196 GAAGCTAAGCCTAATTTTTA-GGGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGAAACTA
* *
493848 AGCTAGATTTTCAAGGGTTTCTTG-TAGAGTAAG
260 AGCTTGATTTTCAAGGATTTCTTGAT-GAGTAAG
* * * * * *
493881 TCCTTCGGGTCATCAGTAAGTCTTTCGTAAGTCTTTCGA-GTATTATACTTAGTTCTATCAGTTC
1 TCCTTCGGGCCATCAGTAAGTCTTTCG--AG-C-AT-GATG-CTTA-A---A-TCCT-TCGGGTC
* * * * * * **
493945 ATCTAT-A-TCTTTCTAGCAACATAATAAGTCATTCGGGCCATTCATAACTCCTTCGGGCAA-GA
54 ATCTATAAGTCTTTCGAGCAAGATGATAAGTCCTTCGGACCATCCATAAGACCTTCGGG-AAGGA
* * * * * *
494007 TATTTTCAAATGAATTTTTAGAAACTAAGTCTGATTTTTAAGGGTTTCTTGATAATTATCTCTAA
118 TGTTTTCAAATGAGTTTTTAGAAACTAAGCCTGATTTTCAAGGGTTTCTTGATGATTATCTCCAA
* * * * * *
494072 AGAATTTTTATATGAAGTTAAGCCTAATTTTTAGGGGTTCCTTGATGGCAACTAAAAATGAAAGA
183 AGAATTTTTAAAGGAAGCTAAGCCTAATTTTTA-GGGTTCCTTGATGACAACTGAAAACGAAAGA
* *
494137 TTTTAAGAAACTAAGCTTGATTTTCAAGGGTTTCTTGATCAGTAAG
247 TTTTAAGAAACTAAGCTTGATTTTCAAGGATTTCTTGATGAGTAAG
* * *
494183 TCCTTCGGGCCATCAGTAAGTCTTAT-AAGCATGATGCTTAAATCCTTCAGGTCAACTATAAGTC
1 TCCTTCGGGCCATCAGTAAGTCTT-TCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTC
* * **
494247 TTTCGAGCAAGATTG-TAAGACCTTAGGACCATCCATAAGACCTTC-ATAGAGGATGTTTTCAAA
65 TTTCGAGCAAGA-TGATAAGTCCTTCGGACCATCCATAAGACCTTCGGGA-AGGATGTTTTCAAA
* * * ** *
494310 TGAGTGTTTAGAAACTAAACATGA-TTTCTTGGGGTTTCTTGATGATTATCTCTAAAGAATTTTT
128 TGAGTTTTTAGAAACTAAGCCTGATTTTC-AAGGGTTTCTTGATGATTATCTCCAAAGAATTTTT
* * * * * *
494374 AAAGAAAGCTAAGTCTAATTTTTTTGGGTTTCTTAATGTCAACTGAAAACGAAAGATTTTAAGAA
192 AAAGGAAGCTAAGCCTAA-TTTTTAGGGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGAA
* *
494439 ACTATGCTAGATTTTCAAAGG-TTTCTTG-TGAGTAAG
256 ACTAAGCTTGATTTTC-AAGGATTTCTTGATGAGTAAG
* * *
494475 TCCTTCGGACCATCAGTAAGTCTTTC-ATGCATGATGCTTAAATCTTTCAGGTCATCTATAAGTC
1 TCCTTCGGGCCATCAGTAAGTCTTTCGA-GCATGATGCTTAAATCCTTCGGGTCATCTATAAGTC
* ** * * * ** *
494539 TTTCGAGCAAGATGGTAAGTGTTTCAGACCATCCGTAAAACCTTCATGCAGGATGTTTTCAAATG
65 TTTCGAGCAAGATGATAAGTCCTTCGGACCATCCATAAGACCTTCGGGAAGGATGTTTTCAAATG
* * * * * * * *
494604 TGTTTATAGAAACTAAACTTCATTTTC-AGGGTTTCCTGATGATTACCTCCAAATAATTTTTAAA
130 AGTTTTTAGAAACTAAGCCTGATTTTCAAGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAA
** * * * * *
494668 GGAAGAGATGCCTAATTTTTAGGGGTTCCTTGATGAGAACTGAAAATGAAATATATTAAGAAACT
195 GGAAGCTAAGCCTAATTTTTA-GGGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGAAACT
*
494733 AAGCTTGATTTTCAA-GAGTTTCTTGGT-ATGTAAG
259 AAGCTTGATTTTCAAGGA-TTTCTTGATGA-GTAAG
* * * * * * *
494767 TCCTTC-GGTCATCAGAAAGTCCTTCAAGC---ATGCTTAAATCCATC-AG--A--TGTAAGTCT
1 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCT
* * * * ** * *
494823 TTCGAGCAAG-TTATAAGTCATTTTGG-CCATCCA-CACTCCTTCGGGTAA-GATGTTTGCGAAT
66 TTCGAGCAAGATGATAAGTC-CTTCGGACCATCCATAAGACCTTCGGG-AAGGATGTTTTCAAAT
* * * * * *
494884 GAATTTTTAGAAACAAAG-CTGATTTTCAGGGGTTTCATGATCATTA--TCCAAAGACTTTTTAA
129 GAGTTTTTAGAAACTAAGCCTGATTTTCAAGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAA
* * *
494946 AGGAAGCTAAGCCTAATTTTTAGGGTTCCTTGATGAAAAATGAAAATGAAAGATTTTAAGAAACT
194 AGGAAGCTAAGCCTAATTTTTAGGGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGAAACT
*
495011 AAGCTTGATTTTCAAGTG-TTTCTTGATCAGTAAG
259 AAGCTTGATTTTCAAG-GATTTCTTGATGAGTAAG
* * * *
495045 TCCATT-GGGCCATCATTAAGTCTTTCAAGCATGATGCTTAAATCCTTCGGTTCAACTATAAGTC
1 TCC-TTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTC
*
495109 TTTCGAGCAAGATTG-TAAGTCCTT-GGACCATCCATAAGACCTT---GTAGGATGTTTTCAAAT
65 TTTCGAGCAAGA-TGATAAGTCCTTCGGACCATCCATAAGACCTTCGGGAAGGATGTTTTCAAAT
* * *
495169 TAGTTTTTAGAAACTAAGTCTGATTTTC-AGAGGTTTCTTGATAATTATCTCCAAAGAATTTTTA
129 GAGTTTTTAGAAACTAAGCCTGATTTTCAAG-GGTTTCTTGATGATTATCTCCAAAGAATTTTTA
* * * * *
495233 AATGAAACTAAGCCTAACTTTTTAGGGTTCCTTGATGACAACTAAAAATGAAAGATTATAAGAAA
193 AAGGAAGCTAAGCCTAA-TTTTTAGGGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGAAA
* *
495298 CCAA-CTTCATTTTCAA-G-TTTCTTGATGAGTAAG
257 CTAAGCTTGATTTTCAAGGATTTCTTGATGAGTAAG
* ** *
495331 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCACGATGCTTAAATCCTTCAAGTCATCTATGATGT-
1 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTAT-AAGTC
* * ** ** * * *** *** * *
495395 TTT----CAA-ATGTTTAGAAC-TAAG-CCTTATTC-TAGGGGTTTC-TTTATGAT-TACCTTCA
65 TTTCGAGCAAGATGATAAGTCCTTCGGACC--ATCCATAAGACCTTCGGGAAGGATGT--TTTCA
* * * * * ** *
495450 AA-GAATTTTTAAAGAATA-TAAGCCT-ACTTTT-TA-GGTTCCTTGATGA-CAACTGAAAAAAA
126 AATGAGTTTTT--AGAA-ACTAAGCCTGA-TTTTCAAGGGTTTCTTGATGATTATCT-CCAAAGA
** * * * ** ***
495509 AGATTTAAA-GAAACT-A-TCTAGATTTTCAAGGGTTTCCTT-ATG-----TGTAAGTCCTTCAG
186 ATTTTTAAAGGAAGCTAAGCCTA-ATTTT-TAGGG-TTCCTTGATGACAACTG-AA-AACGAAAG
*** * * * * * * ***
495565 GCCTTCAGAAAGTCTTCATCATGATGCTTAAATCCTTCGGTCTTG-T-A-TAAG
246 ATTTTAAGAAA--C-TAAGCTTGAT-TTTCAAGGATT---TCTTGATGAGTAAG
* ** * ** * * * *
495616 TCTTTCTAGCAATATCA-TAAGTC-TT-GAG-ACCATCCGTGAAA-CCTT-GGG-GAT-GAT--G
1 TCCTTCGGGC--CATCAGTAAGTCTTTCGAGCATGATGC-TTAAATCCTTCGGGTCATCTATAAG
* *** * * ** ** * ** * *** ** * *
495671 T-TTTCAAATGAGTTTTATAA-AAC-T-AAACTTAT-TTTTAGGGTTTCTTG-ATGAT-TATCTC
63 TCTTTCGAGCAAG-ATGATAAGTCCTTCGGAC-CATCCATAAGACCTTCGGGAAGGATGT-TTTC
* * * * * * **
495729 TAAA-GAATTTTTAAAGGAAGCT-AGCCTAATTTT-TAGGGTTCCTTGATGA--AACTGAAAACG
125 -AAATGAGTTTTT--A-GAAACTAAGCCTGATTTTCAAGGGTTTCTTGATGATTATCTCCAAA-G
* * * * ** * * ** *
495789 AAAGATTTT-AA-GAAACTAAGCTTGATTTCAAGTGTTTCTTGA-G-CAAGTCCTTTGCCATC-A
185 -AA-TTTTTAAAGGAAGCTAAGCCTAATTTTTAGGGTTCCTTGATGACAA---C--TGAAAACGA
** * ** * ** ** *
495849 TAAG-TCTTTGAATGATGCGTAAATCCTTCCTCTAT-AAGTCTTTCGAGCAAG-GTATAAG
243 -AAGAT-TTT-AA-GAAAC-T-AA-GCTTGAT-TTTCAAGGATTTCTTG-ATGAG--TAAG
* * * * ** **
495907 TCCTTGGGGCCATCCA-TAAGACCTTT--AGTATGATGTTTTCAAATTAGTTTTTAAACTAAGTC
1 TCCTTCGGGCCAT-CAGTAAG-TCTTTCGAGCATGATG-CTT--AA--A-TCCTT---C-GGGTC
* * ** ** * * ** * * *
495969 TGAT-TTTCAGGGGTTTCTTG-ATGATTATCTCCAAAGAATTTTTAAAGGAATCTAAGCCTAATT
54 --ATCTAT-AAGTCTTTCGAGCAAGATGA--T---AAG--TCCTT--CGG-A-C-CATCC--A--
* * * ** *** * * * * * *
496032 TATGATTCCTT-GATG-AGAACCTAAAACGAAAGA-TTTTAAGACACTAAGCTTGATTTACAAGG
100 TAAGA--CCTTCG-GGAAGGATGT-TTTCAAATGAGTTTTTAGAAACTAAGCCTGATTTTCAAGG
* * * * * ** * * * **
496094 GTATCTTGATGAGTAAGTCCTTCAGGCCATTAGTAAGTCTTCGAGGATG--ATGCATAAATCCAT
161 GTTTCTTGATGA-TTA-T-C-T----CCA-AAG-AATTTTTAAAGGAAGCTAAGCCT-AAT-TTT
* * **** * ** ** * ** * *
496157 TA-GG-TCATCT-AT-A-AGTCTTTCGA-GCAAGATAATAAGTCATTCGGGC--CA--TCCATA-
214 TAGGGTTCCT-TGATGACA-ACTGAAAACGAAAGATTTTAAGAAACT-AAGCTTGATTTTCA-AG
* *
496211 -ACTCCTTCG--G-GTAAG
275 GATTTCTT-GATGAGTAAG
* ** * ** * * * * *
496226 AT-GTT---TTCA--AATGAA-T-TTTAAAAC-T-AAGCCT-AAT-TTTCAGGGGT-TTCT-TGA
1 -TCCTTCGGGCCATCAGT-AAGTCTTTCGAGCATGATGCTTAAATCCTTC--GGGTCATCTAT-A
* * * ** * ** *** * * *
496277 TGAT-TATC-TGCAAAGAATTTTTAAAG--GTTAAG-CCTAATTTTTAGGGTTCCTT---G-ATG
61 AG-TCTTTCGAGC-AAG-A-TGAT-AAGTCCTTCGGACC--ATCCATA-AG-ACCTTCGGGAAGG
**** ** * * * * * * *
496333 ACAACTGAAAATGAACGATTTTA-AGACTAAGCTTGATTTTCAAGTGTTTCTTGAAGGGTAAGTC
117 ATGTTTTCAAATG-A-GTTTTTAGAAACTAAGCCTGATTTTCAAGGGTTTCTTG-ATGATTA-T-
* * ** * * * * **
496397 CTTCAGCCATCAATAAGTCTTTCGAGCATG--ATGCTTAAATCCTT-GGGTTCAAC-T-ATAGAC
177 C-T---CCA--AAGAA-TTTTTAAAGGAAGCTAAGCCT-AATTTTTAGGGTTC--CTTGAT-GAC
** * * * ** *
496457 -TTTCGAGCAAGATGGTAAG-TCCTTGGGACCATCCATAAGGCCTTCGGGCAGGATGTTTTCAAA
231 AACT-GA--AA-A-CGAAAGAT-TTTAAGA--A-AC-TAA-G-CTT-------GA--TTTTC-AA
* * * *
496520 AGATTT-TAGA-AACTAAG
274 GGATTTCTTGATGAGTAAG
*** * ** * * ** *** ** *
496537 -CC-T--GGTTTTTAG-GGGT-TCTT-GATG-ATTAT-CTCGAAAGAATATTTAAAGAAATGC-C
1 TCCTTCGGGCCATCAGTAAGTCT-TTCGA-GCATGATGCT---TA-AATCCTTCGGGTCAT-CTA
* * * ** * * ******* ** * * **
496592 TAA-TTTTTAGTGTTCCTTGATGACAACTAAAAAAAAAGAT--TTAAGAAAC-T----AAGCTTG
59 TAAGTCTTTCGAG---CAAGATGATAAGTCCTTCGGACCATCCATAAG-ACCTTCGGGAAGGATG
** ** *
496649 ATTTTC-AA-GAGTTTATTGATGAGTAAGTTCTGCAAGCC--ATCAGT-AAGTCTTTGAGCATGA
120 -TTTTCAAATGAGTTT-TT-A-GA--AA---CT--AAGCCTGAT-TTTCAAGGGTTT---CTTGA
** * ** * ** *** *
496709 T-ACTTAAATCCTTCGGTTCCTATAATTCTTTTGA-GAA---AATG-GT-ATCCTT-GCCATCCA
170 TGA-TT--AT-C-TC----CAAAGAATT-TTTAAAGGAAGCTAA-GCCTAATTTTTAGGGTTCCT
* ** * *** * * * * * * *
496766 T-AAGACCTTCGGAAGATTTTTAAATGCGTTTTTAGGAAGTAAGCCTGGTTTTC-AGG-GTTCTT
224 TGATGA-CAACTGAA-A--ACGAAA-G-ATTTTAAGAAACTAAGCTTGATTTTCAAGGATTTCTT
* * **
496828 GATAATTATC
283 GATGAGTAAG
***** ** * * * * * *
496838 TCCAAAGAATT-TTTAAAGGAGTTAAGATTTTTAGGGATCCTTGATGACAACTGAAA-CGAAAGT
1 TCC------TTCGGGCCATCAG-TAAG-TCTTT--CGA-GCATGATG----CTTAAATC----CT
*** * * * * * * ** *
496901 TATAAG-AAACTAAAATTATTTTGAAGAGTTTCTTGATGAGTAAGTCCTTCGGGCCAT-CAGTAA
47 T-CGGGTCATCTATAAGT-CTTT--CGAG---CAAGATGA-TAAGTCCTTCGGACCATCCA-TAA
* * * * * * * * * * * ** **
496964 G-TCTTTGAGCATGATG-CTT-AAATCCTTCGAGTCATCTATAAGTCTTTCGAGCAAGATGAT-A
103 GACCTTCGGGAAGGATGTTTTCAAA----T-GAGT-TTTTAGAA-AC--T-AAGCCTGATTTTCA
* * * * * * * *
497025 A--G-TACTTGGGCCATACATAAGACCTTCGAGTATGATATTTTCAAATGAGTTTTAAAACTAAG
158 AGGGTTTCTT--G--AT-GAT--TATC-TCCA--AAGA-ATTTTTAAA-G-G-----AAGCTAAG
* * * * * * ** * * * *
497087 TCTGATTTTCAGGGGTTTCTTGATGATTATCTCCAAA-G-AA-TTTTTAAAGGAATCTAAGCCTA
205 CCTAATTTTTA-GGGTTCCTTGATGA-CAACTGAAAACGAAAGATTTT-AA-GAAACTAAGCTTG
* * * *
497149 ATTTT-TAGGGTTCCTTGATGAG-AACT
266 ATTTTCAAGGATTTCTTGATGAGTAA-G
**** *** * * * * * ** **
497175 TAAAACGAAAGATTTTAAGACACTAAGCTGATTTACAAGGGTATCTTG-TTGAGTAAGTCCTTTA
1 TCCTTCG---G---GCCA-TCAGTAAG-T-CTTT-C--GAGCATGATGCTT-A--AA-TCCTTCG
* * * * * * * * * *
497239 GGCCAT-TAGTAAGTCTTTCGAGGATGATGTTTAAAATCCATTAGG-TCATCTATAAGTCTTTCG
50 GGTCATCTA-TAAGTCTTTCGAGCAAGATG-AT-AAGTCC-TTCGGACCATCCATAAGACCTTCG
* * * ** ** * * ** * ** * **
497302 AGCAAGTAAGTCATGCCATCCTAACTCCTTCG--GGTAAG-ATG-TTTTCAAATGAATTT-TTAA
111 -GGAAGGATGT--TTTCA-AATGAGTTTTTAGAAACTAAGCCTGATTTTC-AA-GGGTTTCTT--
* * * * * * * *
497362 AAACTAAGCCTAATTTTCAAGGGTTTCTTGATGATTTCTGCAAA-GAATTTTTAAAGGAAGCTAA
168 -GA-T--G-ATTATCTCCAA--------AGA--ATTT-T-TAAAGGAA-----G-------CTAA
* * *
497426 GCCTAATTTTTAGGGTTCCTTGATGACAACTGAAAATGAACGA-TTTAAGACACTAAGCTTGATT
204 GCCTAATTTTTAGGGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGAAACTAAGCTTGATT
* *
497490 TTCAAGTG-TTTCTTGAAGGGT--G
269 TTCAAG-GATTTCTTGATGAGTAAG
* * *
497512 TCCTTC-AGCCATCAATAAGTCTTTCGAGCATGATGCTTAAATCCTT-GGGTTCAACTAT-AGTC
1 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGG-TCATCTATAAGTC
* * * * * *
497574 TTTCCAGCAAGATGGTAAGTCCTTGGGACCAT-CATAAGGCCTTCGGGCAGGATG-TTTCAAA-A
65 TTTCGAGCAAGATGATAAGTCCTTCGGACCATCCATAAGACCTTCGGGAAGGATGTTTTCAAATG
* * * *
497636 AG-TTTTAGAAACTAAGCCTGGTTTTTAA-GGTTTCTTGATGATTATC-CGAAAGAA-ATTTAAA
130 AGTTTTTAGAAACTAAGCCTGATTTTCAAGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAA
* * *
497697 GAAAGTTAAGCCTAATTTTTA-GGTTCCTTGATGACAACT-AAAAAGAAAGATTTTAAGAAACTA
195 GGAAGCTAAGCCTAATTTTTAGGGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGAAACTA
*
497760 AGCTTGATTTTCAA-GAGTTTATTGATGAGTAAG
260 AGCTTGATTTTCAAGGA-TTTCTTGATGAGTAAG
** * *
497793 TTCCTTCAAGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCATTC-GGT--TCTATAATTC
1 -TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTC
* * * * *
497855 TTTTGAG-AAAACGGTAAGACCTTCGGACCATCCATAA-ACCTTC-GGAA-GATGTTTT--AATG
65 TTTCGAGCAAGATGATAAGTCCTTCGGACCATCCATAAGACCTTCGGGAAGGATGTTTTCAAATG
* * * *
497914 CGTTTTT--AAACTAAG-CTGGTTTTCAGGGGTTTCTTGATAATTATCTCCAAAGAATTTTTAAA
130 AGTTTTTAGAAACTAAGCCTGATTTTCAAGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAA
* * *
497976 -GAAGTTAAGCCTAA-TTTTAGGGGATCCTTGATGACAACTGAAAA-GAAAGA-TATAAG-AACT
195 GGAAGCTAAGCCTAATTTTTA-GGGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGAAACT
** * *
498036 AAAATTAATTTTGAA-GAGTTTCTTGATGAGTAAG
259 AAGCTTGATTTTCAAGGA-TTTCTTGATGAGTAAG
* * *
498070 TCCTT---GACATCAGTAAGTCTTTCGAGCATGATCCTTAAATCCTTCGAGTC-TCTATAAGTCT
1 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCT
* * * * *
498131 TTCGAGCAAGATAATAAGTCCTTTGG----GCCATAAGACCTTCGAGTAGGATG-TTTCAAATGA
66 TTCGAGCAAGATGATAAGTCCTTCGGACCATCCATAAGACCTTCGGGAAGGATGTTTTCAAATGA
*
498191 GTTTTT--AAACTAAGTCTGATTTTC-A-GGTTTCTTGAT-ATTATCTCCAAAGAATTTTTAAAG
131 GTTTTTAGAAACTAAGCCTGATTTTCAAGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAAG
* * *
498251 GAATCTAAGCCTAATTTTTAGGGGTTCCTTGATGAGAACTTAAAACGAAAGATTTTAAG--ACTA
196 GAAGCTAAGCCTAATTTTTA-GGGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGAAACTA
* * * *
498314 ACCTAGATTTACAA-G-TATCTTGATGAGTAAG
260 AGCTTGATTTTCAAGGATTTCTTGATGAGTAAG
* * * *
498345 TCCTTCAGGCCATTAGTAAGTCTTTCGAG--GGATGCTTAAATCCATT-AGGT-ATCTATAAGTC
1 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCC-TTCGGGTCATCTATAAGTC
* * ** *
498406 TTTCGAGC-AGA-GATAAGTCATTCGGGCCATCCATAACTCCTTCGAGTAA-GATG-TTTCAAAT
65 TTTCGAGCAAGATGATAAGTCCTTCGGACCATCCATAAGACCTTCG-GGAAGGATGTTTTCAAAT
* *
498467 GAATTTTTA-AAACTAAGCCT-ATTTTC-AGGGTTTCTCTGATGATTATCTGCAAAGAATTTTTC
129 GAGTTTTTAGAAACTAAGCCTGATTTTCAAGGGTTTCT-TGATGATTATCTCCAAAGAATTTTT-
* *
498529 AAAGGAAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGA-AACTGAAAATGAAAGA-TTTAAGAC
192 AAAGGAAGCTAAGCCTAATTTTTA-GGGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGAA
498592 ACTAAGCTTGATTTTCAAGG--TTCTTGA--AGTAAG
256 ACTAAGCTTGATTTTCAAGGATTTCTTGATGAGTAAG
** * *
498625 TCCTTCAAGCCATCAATAAGTCTTTCGAGCATGATGCTTAAATCCTT-GGGTCAACTATAAGTCT
1 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCT
* * *
498689 TTCGAACAAGAT-ATAAGTCCTTGGGACCATCCAT-A-ACCTTCGGGTA-GATG-TTTCAAA--A
66 TTCGAGCAAGATGATAAGTCCTTCGGACCATCCATAAGACCTTCGGGAAGGATGTTTTCAAATGA
* * * * *
498747 ATTTTTAGAAACTAAGCCTGGTTTT--TGGGTTTCTTGATGATTATC-CGAAAGAATATTTAAAG
131 GTTTTTAGAAACTAAGCCTGATTTTCAAGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAAG
* * *
498809 AAAG-TTAGCCTAATTTTTAGGTGTTCCTTGATGACAACTGAAAAAAAGAAAGATTTTAAGAAAC
196 GAAGCTAAGCCTAATTTTTAGG-GTTCCTTGATGACAACTG--AAAACGAAAGATTTTAAGAAAC
498873 TAAGCTTGATTTTCAA-G-TTT-TTGATGAGTAAG
258 TAAGCTTGATTTTCAAGGATTTCTTGATGAGTAAG
* * * * * * *
498905 TTCTTCAGGCCATCAGTAAGTCTTTCTAGCATGATACTTAAAT-CTTC-GGTCCTCCATAATTCT
1 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCT
* * * * *
498968 TT-GAGAAAGATGGTAAGTCCTTCGGACCATCCACAA-ACCTTCAGGAA--AT-TTTTAAAATG-
66 TTCGAGCAAGATGATAAGTCCTTCGGACCATCCATAAGACCTTCGGGAAGGATGTTTTCAAATGA
* * * *
499027 GTTTTTAGGAA-TAAGCCTGGTTTT-AGGGGTTTCTTGATGATTATCTCCAAAGAATATTT-AA-
131 GTTTTTAGAAACTAAGCCTGATTTTCAAGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAAG
** * * * *** *
499088 GAAATTAAGCCTAATTTTT--GATT-C--GA-G-CAAATG-----GTAAGCCCTTAGGACAACCC
196 GAAGCTAAGCCTAATTTTTAGGGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGA-AA--C
* ** * * *
499141 ATAAACCTTCGGTAAGATGTTTTCAAATATGTTTTTAGA-AACTAAG
258 -T-AAGC-T---T--GA--TTTTCAAGGAT-TTCTT-GATGAGTAAG
**** * ** * * * ** * * * *
499187 -CC-T--GATTTTCA--AGAGT-TTCTTGAATATTATCTTCTTTGAATTTTTAAATGAAGATAAG
1 TCCTTCGGGCCATCAGTA-AGTCTT-TCGAGCATGA--TGC-TTAAATCCTT---CG--GGTCAT
* * * * * * * **** * ** *
499245 C-CTAA-TTTTTAGGGATTCCTAGATGAGAATTGAAAACGAAAGAT--ATTAAGAAAC-T----A
56 CTATAAGTCTTT--CGA--GCAAGATGATAAGT-CCTTCGGACCATCCA-TAAG-ACCTTCGGGA
** * *** **
499301 AGCTTGATTTTC-AA-GGGTTTCTTGATGAAA--AAGTCCTTCGAGACATCAGTAAGTCTTTCGA
114 AGGATG-TTTTCAAATGAGTTT-TT-A-GAAACTAAG-CC-T-GA-TTTTC---AAGGGTTT---
** * * ** ** * * ***
499362 GCACGATGCTTAAATCCTTCGGGTCAATA-AGTCATTCGAGCAAGGTGTAAGTCCTTAGATCCCT
165 -CTTGATGATT--AT-C-TC----CAA-AGAATTTTTAAAGGAA-G-CTAAG-CC-TA-ATTTTT
* * * *** * *
499426 A-AG-ACCTTCG--GGC-A-TGATGTTTC-AAATGAGTTTTTAGAAACTAAG-TCTGATTTTCAG
215 AGGGTTCCTT-GATGACAACTGA--AAACGAAA-GA-TTTTAAGAAACTAAGCT-TGATTTTCAA
* *
499483 GGGTTTCTTGATGA-TTA-
274 GGATTTCTTGATGAGTAAG
* ** * *** * * * * ** ** * * *
499500 T-CTCCAAAG-AATTTTTAA-TCAAAGTT-AAGCCTAATTTTTAGGGGTTCCTT-GATGACAACT
1 TCCTTC-GGGCCATCAGTAAGTC---TTTCGAGCATGATGCTTA---AATCCTTCG-GGTCATCT
* * * * * *** * * *
499560 GAAAACAAAAGAT-TTTAAGAAACTACGCTTGATTTTCAAGGGTTTCTTG---AT-GAGTAAGTC
58 ------ATAAG-TCTTT-CG-AGC-AAG-ATGA---T-AAGTCCTTC-GGACCATCCA-TAAGAC
* * * * ** ** ** * *
499620 TTTCGGGCCATCAGTAAGTCTTTCGAGCAA-GA-TGTTTA-AATTTTTTGGGTCATTTAT-AAGT
106 CTTCGGG--A--AGGATGT-TTTC-A--AATGAGTTTTTAGAA-ACTAAGCCTGATTT-TCAAGG
* ** * ** ** * *** * ** ** **
499681 CTTTCGAGCAAGATGATAAGTCCTTTGAGCCATCCAT-AA--AACCTTCGGGATGGGTGTTTTCA
161 GTTTCTTG-ATGAT--TATCTCC--AAAG-AATTTTTAAAGGAAGC-TAAGCCT-AAT-TTTT--
*** * **** *** * **
499743 ACATTTCCTTCACTCGATTCATAGCATTTCGAATCAGTGACGCCTCACCATAGGGGATAACATTT
215 AGGGTTCCTTGA-T-GA--CA-A-C---T-GAA--A---ACGAAAGATTTTA--AGA-AAC-TAA
* * * * *
499808 CCTT-TTCTCAATTCACGGCATTTC--GAATCAGCAATG
261 GCTTGAT-T---TTCAAGG-ATTTCTTG-ATGAGTAA-G
* ** * * * * * * * *
499844 CCCCACTAGAGGGGGTTAACATTTC-CTATGGCTCGATTCACAACACTTCGAATCAGCATAAGTC
1 --TC-CT---TCGGG---CCA--TCAGTA-AG-TC-TTTC-GAGCA--T-G-AT--GCTTAAATC
** * * * * * * * * *
499908 CTTCAAGCCATC-AGTAAGTCTTTCGAACATGATGATTAAATCCTT-TGAGTCATCTATAAGTCT
45 CTTCGGGTCATCTA-TAAGTCTTTCGAGCAAGATGA-TAAGTCCTTCGGA-CCATCCATAAGACC
* * * ** ** * * *
499971 TTCGAGCAAGATGGTAAGTCCTTTAGGCCATCCATAAGACCTTTGGGCAGC-AAGTTTTCAAT-A
107 TTCG-G---GAAGG-ATGT--TTT----CA---A-ATGAGTTTTTAGAAACTAAG----C-CTGA
* * * * * *
500034 TTTTC-GGTGCTCGATTCTCAAATCCTTCGGGTAAGATGT-TTTCGAATGAATTTTTACA--AA-
152 TTTTCAAG-G---G--T-T----T-CTT---G-ATGAT-TATCTCCAAAGAATTTTTAAAGGAAG
* * * * * ** * *
500094 CTAAGCTTGATTTTTCAGGGGTTTCTTGATGATTATCTCCAAA-G-AA-TTTTTAAAGGAAGCTA
200 CTAAGCCTAATTTTT-A-GGGTTCCTTGATGA-CAACTGAAAACGAAAGATTTT-AA-GAAACTA
* * * * **
500156 AGCCTAATTTT-TAGGGTTTCCTTGATGACAAATG
260 AGCTTGATTTTCAAGGATTT-CTTGATGAGTAA-G
**** *** ** * * * * * *
500190 AAAAT-GAAAGATTTTAAGAAGCTAAGCTTTATTTTCATGTGTTTCTTGACGATTAAGTCCTTCG
1 TCCTTCG---G---GCCATCAG-TAAG---T-CTTTC--GAG---CATGATGCTTAAATCCTTCG
* * * ** * * * ** * * * * **
500254 AGCCATCAATAAGTCTTTCGAGCATCATGCTTAAATTCTTCGGTTCAACTATAAGTCTTTCGAAC
50 GGTCATCTATAAGTCTTTCGAGCAAGATG-ATAAGTCCTTCGGACCATCCATAAGACCTTCG-GG
** ** ** *** *
500319 AAGATGATAAGTCCTTGAGACCATCCATAA-GACCTTCGAGCAGGATGTTTTCAAATGCATTTTT
113 AAG--GAT--GT--TT-------T-CA-AATGAGTTTTTAG-A--AACTAAGC--CTG-A-TTTT
* * ** ** **
500383 AGAAACTAAGTTTGG-TT-TTCATGGGTT-TCT-TGAAG-ATTATCACCAAATAATTTTTAAAGG
156 -----C-AAG---GGTTTCTTGAT-GATTATCTCCAAAGAATT-T--TTAAAGGA----------
* *
500443 AAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGACAACTGAAAACGAAATATTTTAAGAAATTAA
198 -AGCTAAGCCTAATTTTTA-GGGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGAAACTAA
* *
500508 GCTTGATTTTCAAGTG-TTTTTTTATGAGTAAG
261 GCTTGATTTTCAAG-GATTTCTTGATGAGTAAG
* * * * * *
500540 TCCTTTGGGCCATCAGTAAGTCTTACAAGCATGATGCTTAAATCCTTCGGTTCCTCTATAATTCT
1 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCT
* * * *
500605 TTCGAACAAGATGATAAGTCCTTCAGACCATCCATACGACCTTCAGGCAA-GATGTTTTCAAATG
66 TTCGAGCAAGATGATAAGTCCTTCGGACCATCCATAAGACCTTC-GGGAAGGATGTTTTCAAATG
* * * * * *
500669 CGTTTTTAGAAACAAAGCTTGGTTTTCAGGGGTTTCATGATGATTATCTCCAAAGAATTTTTAAA
130 AGTTTTTAGAAACTAAGCCTGATTTTCAAGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAA
* * *
500734 GAAAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGACAACTGAAAACAAAAGATTCTAAGAAACT
195 GGAAGCTAAGCCTAATTTTTA-GGGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGAAACT
* * * *
500799 ATGCTAGATTTTCAAGGGTTTCTTGATGAATAAG
259 AAGCTTGATTTTCAAGGATTTCTTGATGAGTAAG
* * * * *
500833 TCATTCGGGCCATCAATAAGTCTTTCAAGCATGATGTTTAAATCCTTCGAGTCATCTATAAGTCT
1 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCT
* * * * * * *
500898 TTTGAGCAAGATGATAAGTACTTTGGGCCATCAATAAGACCTTCGAGTAGGATGTTTTCAAATGA
66 TTCGAGCAAGATGATAAGTCCTTCGGACCATCCATAAGACCTTCGGGAAGGATGTTTTCAAATGA
* * * *
500963 ATTTTTAGAAACTAAGTCTAATTTTCAGGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAAG
131 GTTTTTAGAAACTAAGCCTGATTTTCAAGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAAG
* * * * * * *
501028 AAAGTTAAACCTAAATTTTAGGGTTCCTTGATGAAAACTGAAAACAAAAGATTTTAAGTAACTAA
196 GAAGCTAAGCCTAATTTTTAGGGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGAAACTAA
501093 GCTTGATTTTCAAGGGA-TTCTTTGATGAGTAAG
261 GCTTGATTTTCAA-GGATTTC-TTGATGAGTAAG
* * * * *
501126 TTCTTCAGGCCATCAATAAGTCTTTCGAGCATGATGCTTAAATCCATCAGGTCATCTATAAGTCT
1 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCT
* * * * ** **
501191 TTTGAGCAAGATAATAAGTCATTCGCG-TCATCCATAACTCCTTCGTGTCA-GATGTTTTCAAAT
66 TTCGAGCAAGATGATAAGTCCTTCG-GACCATCCATAAGACCTTCG-GGAAGGATGTTTTCAAAT
* * * *
501254 GAATTTTTAGAAACTAAGCTTGATTTTCAGGGGTTTCTTGATGATTATCTCCAAATAATTTTTAA
129 GAGTTTTTAGAAACTAAGCCTGATTTTCAAGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAA
* * * * *
501319 AGGAAGCTTAGCCTAATTTTTAGGGGTTACTTGACGACAACTGAAAACAAAAGAATTTAAGAAAC
194 AGGAAGCTAAGCCTAATTTTTA-GGGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGAAAC
* *
501384 TACGCTTGATTTTCAAGGGTTTCTTGATGAGTAAG
258 TAAGCTTGATTTTCAAGGATTTCTTGATGAGTAAG
* * **
501419 TCTTTCGGGCCATCAGTAAGTCTTTCGAGCAAGATG-TGTAAATTTTTCGGGTCATCTATAAGTC
1 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCT-TAAATCCTTCGGGTCATCTATAAGTC
* * * *
501483 TTTCGAGCAAGATGATAAGTCCTT-TGAGCCATCCATAAAACCTTCGGGATGGGTGTTTTCAACA
65 TTTCGAGCAAGATGATAAGTCCTTCGGA-CCATCCATAAGACCTTCGGGAAGGATGTTTTCAA-A
* ** * * ** * * ** ** * *
501547 T---TTCCTTCACTCAATTCATAGCATTTCGAATCAGTGACGCCTCACCATAGGGGATAACATTT
128 TGAGTT--TTTA-GAAACT-A-AGC--CT-G-AT-TTTCAAGGGT-TTC-T---TGAT--GA-TT
* * ** * ** * *
501609 CCTCTTCTCAATTCACGGCATTTCGAATCAGTAATGCCCCACTAGAGGGGTTAACATTTCCTATG
175 -ATC-TC-CAA---A--GAATTTTTAA--AGGAA-G-----CTA-A--GCCT-A-ATTT-TTAGG
* * * ** * * ** * *
501674 GCTCGATTCACAAC-ACTTCG-AATCAGCATAAG-TCCTTCAAGCCA-TCAG--TAAGTCTTTC-
218 GTTC-CTTGATGACAAC-T-GAAAAC-G-A-AAGAT--TTTAAGAAACTAAGCTTGA-T-TTTCA
* * * *
501732 --GA--ACATGATGATTAAA
273 AGGATTTCTTGATGAGTAAG
* * * * * * ** * * *
501748 TCCTTTGAGTCATCTA-TAAGTCTTTCGAGCAAGATG-GTAAGTCCTTTAGGCCATCCATAAGAC
1 TCCTTCGGGCCATC-AGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAG-T
* ** ** * *
501811 CTTTGGGCAGCAAG-TTTTCAA-TATTTTCGGTGCTCGATTCTCA-AA-TCCTTCGGGTAA-GAT
64 CTTT-CG-AGCAAGATGAT-AAGT-CCTTCGG-AC-C-A-TC-CATAAGACCTTCGGG-AAGGAT
* * * * *
501871 GTTTTCGAATGAATTTTTACAAACTAAGCTTGATTTTTCAGGGGTTTCTTGATGATTATCTCCAA
119 GTTTTCAAATGAGTTTTTAGAAACTAAGCCTGA-TTTTCAAGGGTTTCTTGATGATTATCTCCAA
* *
501936 AGAATTTTTAAAGGAAGCTAAGCCTAATTTTTAGGGTTTCCTTGATGACAAATGAAAATGAAAGA
183 AGAATTTTTAAAGGAAGCTAAGCCTAATTTTTAGGG-TTCCTTGATGACAACTGAAAACGAAAGA
* * * * *
502001 TTTTAAGAAGCTAAGCTTTATTTTCATGTG-TTTCTTGACGATTAAG
247 TTTTAAGAAACTAAGCTTGATTTTCAAG-GATTTCTTGATGAGTAAG
* * * * * *
502047 TCCTTCGAGCCATCAATAAGTCTTTCGAGCATCATGCTTAAATTCTTCGGTTCAACTATAAGTCT
1 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCT
* * *
502112 TTCGAACAAGATGATAAGTCCTT-GAGACCATCCATAAGACCTTCGAGCAGGATGTTTTCAAATG
66 TTCGAGCAAGATGATAAGTCCTTCG-GACCATCCATAAGACCTTCGGGAAGGATGTTTTCAAATG
** * * * * *
502176 CA-TTTTTAGAAACTAAGTTTGGTTTTCATGGGTTTCTTGAAGATTATCACCAAATAATTTTTAA
130 -AGTTTTTAGAAACTAAGCCTGATTTTCAAGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAA
* *
502240 AGGAAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGACAACTGAAAACGAAATATTTTAAGAAAT
194 AGGAAGCTAAGCCTAATTTTTA-GGGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGAAAC
* *
502305 TAAGCTTGATTTTCAAGTG-TTTTTTTATGAGTAAG
258 TAAGCTTGATTTTCAAG-GATTTCTTGATGAGTAAG
* * * * * * * *
502340 TGCTTTGGGCCATCGGTAAGTCTTACAAGCATGATGCTTAAATCCTTCGGTTCCTCTATAATTCT
1 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCT
* * * *
502405 TTCGAACAAGATGATAAGTCCTTCAGACCATCCATACGACCTTCAGGCAA-GATGTTTTCAAATG
66 TTCGAGCAAGATGATAAGTCCTTCGGACCATCCATAAGACCTTC-GGGAAGGATGTTTTCAAATG
* * * * * *
502469 CGTTTTTAGAAACAAAGCTTGGTTTTCAGGGGTTTCATGATGATTATCTCCAAAGAATTTTTAAA
130 AGTTTTTAGAAACTAAGCCTGATTTTCAAGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAA
* * *
502534 GAAAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGACAACTGAAAACAAAAGATTCTAAGAAACT
195 GGAAGCTAAGCCTAATTTTTA-GGGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGAAACT
* * * *
502599 ATGCTAGATTTTCAAGGGTTTCTTGATGAATAAG
259 AAGCTTGATTTTCAAGGATTTCTTGATGAGTAAG
* * * *
502633 TCATTCGGGCCATCAGTAAGTCTTTCAAGCATGATGTTTAAATCCTTCGAGTCATCTATAAGTCT
1 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCT
* * * * * * *
502698 TTTGAGCAAGATGATAAGTACTTTGGGCCATCAATAAGACCTTCGAGTAGGATGTTTTCAAATGA
66 TTCGAGCAAGATGATAAGTCCTTCGGACCATCCATAAGACCTTCGGGAAGGATGTTTTCAAATGA
* * * *
502763 ATTTTTAGAAACTAAGTCTAATTTTCAGGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAAG
131 GTTTTTAGAAACTAAGCCTGATTTTCAAGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAAG
* * * * * * * *
502828 AAAGTTAAACCTAAGTTTTAGGGTTCCTTGATGAGAACTAAAAACAAAAGATTTTAAGTAACTAA
196 GAAGCTAAGCCTAATTTTTAGGGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGAAACTAA
502893 GCTTGATTTTCAAGG-TATTCTTGATGAGTAAG
261 GCTTGATTTTCAAGGAT-TTCTTGATGAGTAAG
* * * *
502925 TTCTTCAGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCATCAGGTCATCTATAAGTCT
1 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCT
* * * * ** **
502990 TTTGAGCAAGATAATAAGTCATTCGCG-TCATCCATAACTCCTTCGAGTCA-GATGTTTTCAAAT
66 TTCGAGCAAGATGATAAGTCCTTCG-GACCATCCATAAGACCTTCG-GGAAGGATGTTTTCAAAT
* * *
503053 GAATTTTTAGAAACTAAGCTTGATTTTCAAGGGTTTCTTGATGATTATCTCTAAAGAATTTTTAA
129 GAGTTTTTAGAAACTAAGCCTGATTTTCAAGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAA
* * * * * *
503118 AGGAAACTTAGCCTAATTTTTAGGGGTTACTTGACGACAACTGAAAACAAAAGAATTTAAGAAAC
194 AGGAAGCTAAGCCTAATTTTTA-GGGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGAAAC
* * *
503183 TACGCTTGATTTTCAAGGGTTTCTTGATTAGTAAG
258 TAAGCTTGATTTTCAAGGATTTCTTGATGAGTAAG
* * * **
503218 TCTTTCGGGCCATCAGTAAGTCTTTCGAGCAAGATGTTTAAATTTTTCGGGTCATCTATAAGTCT
1 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCT
* * * * *
503283 TTCGAGCAAAATGATAAGTCCTT-TGAGCCATCCATAAAACCTTCGGGATGGGTGTTTTCAACAT
66 TTCGAGCAAGATGATAAGTCCTTCGGA-CCATCCATAAGACCTTCGGGAAGGATGTTTTCAA-AT
* ** * * ** * * ** ** * *
503347 ---TTCCTTCACTCAATTCATAGCATTTCGAATCAGTGACGCCTCACCATAGGGGATAACATTTC
129 GAGTT--TTTA-GAAACT-A-AGC--CT-G-AT-TTTCAAGGGT-TTC-T---TGAT--GA-TT-
* * ** * ** * *
503409 CTCTTCTCAATTCACGGCATTTCGAATCAGCAATGCCCCACTAGAGGGGTTAACATTTCCTATGG
175 ATC-TC-CAA---A--GAATTTTTAA--AGGAA-G-----CTA-A--GCCT-A-ATTT-TTAGGG
* * * ** * ** * * ** * *
503474 CTCGATTCACAAC-ACTTCGAATCAGCCTAA-ATCCTT-CGAGCCATCAG--TAAGTCTTTC---
219 TTC-CTTGATGACAAC-T-GAA--AACGAAAGAT-TTTAAGAAAC-TAAGCTTGA-T-TTTCAAG
* * * *
503531 GA--ACATGATGATTAAA
275 GATTTCTTGATGAGTAAG
* * * * * * * ** * * *
503547 TCCTTTGAGTCATCTA-TAAGTCTTTCGAGAAAGATG-GTAAGTCCTTTAGGCCATCCATAAGAC
1 TCCTTCGGGCCATC-AGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAG-T
* ** ** * * **
503610 CTTTGGGCAGCAAG-TTTTCAA-TATTTTCGGTGCTCGATTC-TCAACTCCTTCGGGTAA-GATG
64 CTTT-CG-AGCAAGATGAT-AAGT-CCTTCGG-AC-C-ATCCAT-AAGACCTTCGGG-AAGGATG
* * * *
503671 TTTTCGAATGAATTTTTAGAAACTAAGCTTGATTTTTCAGGGGTTTCTTGATGATTATCTCCAAA
120 TTTTCAAATGAGTTTTTAGAAACTAAGCCTGA-TTTTCAAGGGTTTCTTGATGATTATCTCCAAA
* *
503736 GAATTTTTAAAGGAAGCTAAGCCTAATTTTTAGGGTTTCCTTGATGACAAATGAAAATGAAAGAT
184 GAATTTTTAAAGGAAGCTAAGCCTAATTTTTAGGG-TTCCTTGATGACAACTGAAAACGAAAGAT
* * * *
503801 TTTAAGAAGCTAAGCTTTATTTTCAAGTG-TTTCTTGACGATTAAG
248 TTTAAGAAACTAAGCTTGATTTTCAAG-GATTTCTTGATGAGTAAG
* * * *** *
503846 TCCTTCGAGCCATCAATAAGTCTTTCGAGCATCATGCTTAAATCCTTCTATTCAACTATAAGTCT
1 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCT
* * * *
503911 TTCGAACAAGATGATAAGTCCTTGGGACCATCCATAAGACCTTCGAGCAGGATGTTTTCAAATGC
66 TTCGAGCAAGATGATAAGTCCTTCGGACCATCCATAAGACCTTCGGGAAGGATGTTTTCAAATG-
** * * * *
503976 A-TTTTTAGAAACTAAGTTTGGTTTTCATGGGTTTCTTGATGATTATCACCAAATAATTTTTAAA
130 AGTTTTTAGAAACTAAGCCTGATTTTCAAGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAA
*
504040 GGAAGCTAAGCCTAATTTTTAGTGGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGAAATT
195 GGAAGCTAAGCCTAATTTTTAG-GGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGAAACT
* *
504105 AAGCTTCATTTTCAAGTG-TTT-TTTATGAGTAAG
259 AAGCTTGATTTTCAAG-GATTTCTTGATGAGTAAG
* * * * * *
504138 TCCTTTGGGCCATCAGTAAGTCTTACAAGCATGATGCTTAAATCCTTCGGTTCCTCTATAATTCT
1 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCT
* * * * * *
504203 TTCAAACAAGATGATAAGTCCTTCAGACCATCCATACGACCATCAGGCAA-GATGTTTTCAAATG
66 TTCGAGCAAGATGATAAGTCCTTCGGACCATCCATAAGACCTTC-GGGAAGGATGTTTTCAAATG
* * *
504267 ATTTTTTAGAAACTAAGCCTGGTTTTC-AGTGGTTTCGTGATGATTATCTCCAAAGAATTTTTAA
130 AGTTTTTAGAAACTAAGCCTGATTTTCAAG-GGTTTCTTGATGATTATCTCCAAAGAATTTTTAA
* * * *
504331 AGAAAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGATAACTGAAAACAAAAGATTCTAAGAAAC
194 AGGAAGCTAAGCCTAATTTTTA-GGGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGAAAC
* * * * *
504396 TATGCTAGATTTTCAAGGGTTTCGTGATGAATAAG
258 TAAGCTTGATTTTCAAGGATTTCTTGATGAGTAAG
** * * * * **
504431 TTATTCGAGCCATCAGTATGTCTTTCAAGCAAGATGCTTAAATCCTTCAAGTCATCTATAAGTCT
1 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCT
* * * * *
504496 TTCGAGCAAGATGATAAGTACTTTGGGCCATCCATAAGACCTTCGAGTAGGATGTTTTCAAATGA
66 TTCGAGCAAGATGATAAGTCCTTCGGACCATCCATAAGACCTTCGGGAAGGATGTTTTCAAATGA
* * * * * *
504561 ATTTTTAGAAACTAAGTCTAATTTTTAGGGGTTTCTTGATGATTATATCCAAAGAATTTTTAAAG
131 GTTTTTAGAAACTAAGCCTGATTTTCAAGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAAG
** * * * *
504626 GAAATTAAACTTAATTTTTAGGGTTCCTTGATGAGAACTGAAAACAAAAGATTTTAAGAAACTAA
196 GAAGCTAAGCCTAATTTTTAGGGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGAAACTAA
*
504691 GCTTGATTTTCAAGGGTTTCTTGATGAGTAAG
261 GCTTGATTTTCAAGGATTTCTTGATGAGTAAG
* * * * *
504723 TTCTTCAGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCATCAGGTAATCTATAAGTCT
1 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCT
* * * ** ** *
504788 TTTGAGCAAGATAATAAGTCATTCGGGTCATCCATAACTCCTTCGGGTCA-GATGTTTTCAAATG
66 TTCGAGCAAGATGATAAGTCCTTCGGACCATCCATAAGACCTTCGGG-AAGGATGTTTTCAAATG
* * *
504852 AATTTTTAGAAACTAAGCTTGATTTTCAAGGGTTTCTTGATGATTATCTCCAAATAATTTTTAAA
130 AGTTTTTAGAAACTAAGCCTGATTTTCAAGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAA
* * * * *
504917 GGAAGCTTAGCCTAATTTTTAGGGGTTACTTGACGACAACTGAAAACAAAAGAATTTAAGAAACT
195 GGAAGCTAAGCCTAATTTTTA-GGGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGAAACT
* *
504982 ACGCTTGATTTTCAAGGGTTTCTTGATGAGTAAG
259 AAGCTTGATTTTCAAGGATTTCTTGATGAGTAAG
* * * **
505016 TCTTTCGGGCCATCAGTAAGTCTTTCGAGCAAGATGTTTAAATTTTTCGGGTCATCTATAAGTCT
1 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCT
* * * *
505081 TTCGAGCAAGATGATAAGTCCTT-TGAGCCATCCATAAAACCTTCGGGATGGGTGTTTTCAACAT
66 TTCGAGCAAGATGATAAGTCCTTCGGA-CCATCCATAAGACCTTCGGGAAGGATGTTTTCAA-A-
* * * * * *** * ** *
505145 TTCCTTCACTCAATTCATAGCATTTTGAATCAGTGACGCCTCACCAT-AGGGGATAACATT--TC
128 -----TGAGT---TT-TTAG-A-----AA-C--T-AAGCCTGATTTTCAAGGG-TTTC-TTGATG
* * * * ** ** * ** *
505207 CTTTTCT-CAATTCACG-GTATTTCAAA-TCAGC-AATGCCCCA-CTAGAGGGGTTAACATTTCC
172 ATTATCTCCAA---A-GAAT-TTTTAAAGGAAGCTAA-GCCTAATTTTTA-GGGTT--C-CTT--
* * * ** * ** * ** * *** **
505267 TATGGC-TC-GATTCAC-AACA-CTTCGAATCAGCCTAAATCCTTCGAGCCATCAGTAAGTCTTT
225 GATGACAACTGA-AAACGAA-AGATTTTAA-GAAACT-AA-GCTT-GA-TTTTC---AAGGATTT
* * *
505328 CGAACATGATGATTAAA
280 ----CTTGATGAGTAAG
* * * * * * * * * *
505345 TCCTTTGAGTCATCTA-TAAGTCTTTCGAGAAAGATG-GTAAGTCCCTT-AGGCCATCCATAAGA
1 TCCTTCGGGCCATC-AGTAAGTCTTTCGAGCATGATGCTTAAAT-CCTTCGGGTCATCTATAAG-
* * * ** ** * * **
505407 CCTTTGGGCAGCAA-TTTTTCAA-TATTTTCGGTGCTCGATTC-TCAACTCCTTCGGGTAA-GAT
63 TCTTT-CG-AGCAAGATGAT-AAGT-CCTTCGG-AC-C-ATCCAT-AAGACCTTCGGG-AAGGAT
* * * *
505468 GTTTTCGAATGAATTTTTAGAAACTAAGCTTGATTTTTCAGGGGTTTCTTGATGATTATCTCCAA
119 GTTTTCAAATGAGTTTTTAGAAACTAAGCCTGA-TTTTCAAGGGTTTCTTGATGATTATCTCCAA
* *
505533 AGAATTTTTAAAGGAAGCTAAGCCTAATTTTTAGGGTTTCCTTGATGACAAATGAAAATGAAAGA
183 AGAATTTTTAAAGGAAGCTAAGCCTAATTTTTAGGG-TTCCTTGATGACAACTGAAAACGAAAGA
* * * *
505598 TTTTAAGAAGCTAAGCTTTATTTTCAAGTG-TTTCTTGACGATTAAG
247 TTTTAAGAAACTAAGCTTGATTTTCAAG-GATTTCTTGATGAGTAAG
* * * * ** *
505644 TCCTTCGAGCCATCAATAAGTCTTTCAAGCATCATGCTTAAATCCTTCGATTCAACTATAAGTCT
1 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCT
* * * * *
505709 TTCGAACAAGATGATAAGTCCTTGGGACCATCCATAAGACCTTCGAGCAGGATGTTTTCAATTGC
66 TTCGAGCAAGATGATAAGTCCTTCGGACCATCCATAAGACCTTCGGGAAGGATGTTTTCAAATG-
** * * * * *
505774 A-TTTTTAGAAACTAAGTTTGGTTTTCATGGGTTTCTTGATGATTATCACAAAATAATTTTTAAA
130 AGTTTTTAGAAACTAAGCCTGATTTTCAAGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAA
* * * *
505838 GGAAGCTAAGCCTAATTTTTAGTGGTTCCTTGATGATAACTGAAAAGGAAATATTTTAAGAAATT
195 GGAAGCTAAGCCTAATTTTTAG-GGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGAAACT
*
505903 AAGCTTGATTTTCAAGTG-TTT-TTTATGAGTAAG
259 AAGCTTGATTTTCAAG-GATTTCTTGATGAGTAAG
* * * * * *
505936 TCCTTTGGGCCATCAGTAAGTCTTACAAGCATGATGCTTAAATCCTTCGGTTCCTCTATAATTCT
1 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCT
* ** * * *
506001 TTCGAACAAGATGATAAGTCCTTTAGACCATCCATACGACCTTCAGGAAAGATGTTTTCAAATGA
66 TTCGAGCAAGATGATAAGTCCTTCGGACCATCCATAAGACCTTCGGGAAGGATGTTTTCAAATGA
* *
506066 GTTTTTAGAAACTAAGCCTGGTTTTC-AGTGGTTTCGTGATGATTATCTCCAAAGAATTTTTAAA
131 GTTTTTAGAAACTAAGCCTGATTTTCAAG-GGTTTCTTGATGATTATCTCCAAAGAATTTTTAAA
* * *
506130 GAAAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGACAACTGAAAACAAAAGATTCTAAGAAACT
195 GGAAGCTAAGCCTAATTTTTA-GGGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGAAACT
* * * *
506195 ATGCTAGATTTTCAAGGGTTTCTTGATGAATAAG
259 AAGCTTGATTTTCAAGGATTTCTTGATGAGTAAG
* * *
506229 TCATTCGGGCCATCAGTAAGTCTTTCAAGCATGATGCTTAAATCCTTCGAGTCATCTATAAGTCT
1 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCT
* * * ** * *
506294 TTCGAGCAAGATGATAAGTACTTTGGGCCATCCATAAGACCTTCAAGTACGATGTTTTCAAATGA
66 TTCGAGCAAGATGATAAGTCCTTCGGACCATCCATAAGACCTTCGGGAAGGATGTTTTCAAATGA
* * * *
506359 ATTTTTAGAAACTAAGTCTAATTTTCAGGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAAG
131 GTTTTTAGAAACTAAGCCTGATTTTCAAGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAAG
** * * *
506424 GAAATTAAACCTAATTTTTAGGGTTCCTTGATGAGAACTGAAAACAAAAGATTTTAAGAAACTAA
196 GAAGCTAAGCCTAATTTTTAGGGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGAAACTAA
*
506489 GCTTGATTTTCAAGGGTTTCTTGATGAGTAAG
261 GCTTGATTTTCAAGGATTTCTTGATGAGTAAG
* * * * *
506521 TTCTTCAGGCCATCAGAAAGTCTTTCGAGCATGATGCTTAAATCCATCAGGTCATCTATAAGTCT
1 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCT
* * * ** ** *
506586 TTTGAGCAAGATAATAAGTCATTCGGGTCATCCATAACTCCTTCGGGTCA-GATGTTTTCAAATG
66 TTCGAGCAAGATGATAAGTCCTTCGGACCATCCATAAGACCTTCGGG-AAGGATGTTTTCAAATG
* * * *
506650 AATTTTTAGAAACTAATCTTGATTTTCAGGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAA
130 AGTTTTTAGAAACTAAGCCTGATTTTCAAGGGTTTCTTGATGATTATCTCCAAAGAATTTTT--A
** * * * * * *
506715 AAAAAAACTTAGCCTAATTCTTAGGGGTTCCTTGACGACAACTGAAAACAAAAGAATTTAAGAAA
193 AAGGAAGCTAAGCCTAATTTTTA-GGGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGAAA
* *
506780 CTACGCTTGATTTTCAAGGGTTTCTTGATGAGTAAG
257 CTAAGCTTGATTTTCAAGGATTTCTTGATGAGTAAG
* * * **
506816 TCTTTCGGGCCATCATTAAGTCTTTCGAGCAAGATG-TGTAAATTTTTCGGGTCATCTATAAGTC
1 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCT-TAAATCCTTCGGGTCATCTATAAGTC
* * * *
506880 TTTCGAGCAAGATGATAAGTCCTT-TGAGCCATCCATAAAACCTTCGGGATGGGTGTTTTCAACA
65 TTTCGAGCAAGATGATAAGTCCTTCGGA-CCATCCATAAGACCTTCGGGAAGGATGTTTTCAA-A
* * * ** * * * ** ** *
506944 TTTCCTTCACTCAATTCATAGCATTTCGAATCAGTGATGCCTCACCATAGGGGATAACATT--TC
128 ------TGAGT---TT-TTAG-A-AACTAAGC-CTGAT---T-TTCA-A-GGG-TTTC-TTGATG
* * * ** * ** * *
507007 CTTTTCT-CAATTCACGTCATTTCGAATCAGCAATGCCCCACTAGAGGGGTTAACATTTCCTATG
172 ATTATCTCCAA---A-G-AATTTTTAA--AGGAA-G-----CTA-A--GCCT-A-ATTT-TTAGG
* * * ** * ** * * ** * *
507071 GCTCGATTCACAAC-ACTTCGAATCAGCTTAAG-TCCTT-CGAGCCATCAG--TAAGTCTTTC--
218 GTTC-CTTGATGACAAC-T-GAA--AACGAAAGAT-TTTAAGAAAC-TAAGCTTGA-T-TTTCAA
* * * *
507129 -GA--ACATGATGATTAAA
274 GGATTTCTTGATGAGTAAG
* * * * * * * ** * * *
507145 TCCTTTGAGTCATCTA-TAAGTCTTTCGAGAAAGATG-GTAAGTCCTTTAGGCCATCCATAAGAC
1 TCCTTCGGGCCATC-AGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAG-T
* ** ** * * **
507208 CTTTGGGCAGCAAG-TTTTCAA-TATTTCGGTGCTCGATTC-TCAACTCCTTCGGGTAA-GATGT
64 CTTT-CG-AGCAAGATGAT-AAGTCCTTCGG-AC-C-ATCCAT-AAGACCTTCGGG-AAGGATGT
* * * *
507269 TTTCGAATGAATTTTTAGAAACTAAGCTTGATTTTTCAGGGGTTTCTTGATGATTATCTCCAAAG
121 TTTCAAATGAGTTTTTAGAAACTAAGCCTGA-TTTTCAAGGGTTTCTTGATGATTATCTCCAAAG
* * * *
507334 AATTTTTAAAGGAAACTAAGCCTAATTTTTAGGGTTTCCTTGATGAAAAATGAAAATGAAAGATT
185 AATTTTTAAAGGAAGCTAAGCCTAATTTTTAGGG-TTCCTTGATGACAACTGAAAACGAAAGATT
* * * * *
507399 TTAAGAATCTAAGCTTTATTTTTAAGTG-TTTCTTGACGATTAAG
249 TTAAGAAACTAAGCTTGATTTTCAAG-GATTTCTTGATGAGTAAG
** * * * *
507443 TCCTTCGATCCATCAATAAGTCTTTCGAGCATCATGCTTAAATCCTTCGGTTCAACTATAAGTCT
1 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCT
* * * * *
507508 TTCGAACAAGATGATAAGTCTTTGGGACCATCCATAAGACCTTCGAGCAGGATGTTTTCAAATGC
66 TTCGAGCAAGATGATAAGTCCTTCGGACCATCCATAAGACCTTCGGGAAGGATGTTTTCAAATG-
** * * * * *
507573 A-TTTTTAGAAACTAAGTTTGGTTTCCATGGGTTTCTTGATGATTATCACCAAATAATTTTTAAA
130 AGTTTTTAGAAACTAAGCCTGATTTTCAAGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAA
* *
507637 GGAAGCTAAGCCTAATTTTTAGTGGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGGAATT
195 GGAAGCTAAGCCTAATTTTTAG-GGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGAAACT
* *
507702 AAGCTTGATTTTCAAGTG-TTTTTTTATGAGTAAG
259 AAGCTTGATTTTCAAG-GATTTCTTGATGAGTAAG
* * * * * *
507736 TCCTTTGGGCCATCAGTAAGTCTTACAAGCATGATGCTTAAATCCTTCGGTTCCTCTATAATTCT
1 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCT
* * * * * *
507801 TTCGAACAAGGTGATAAGTCCTTCAGACCATCCATACGATCTTCAGGCAA-GATGTTTTCAAATG
66 TTCGAGCAAGATGATAAGTCCTTCGGACCATCCATAAGACCTTC-GGGAAGGATGTTTTCAAATG
* * * *
507865 AGTTTTTAGAAACTAAGCCTGGTTTTC-AGTGGTTTCGTGATTATTTTCTCCAAAGAATTTTTAA
130 AGTTTTTAGAAACTAAGCCTGATTTTCAAG-GGTTTCTTGATGATTATCTCCAAAGAATTTTTAA
* * *
507929 AGAAAGCTAAGCCTAATTTTTAGGTGTTCGTTGATGACAACTGAAAAC-AGAAGATTCTAAGAAA
194 AGGAAGCTAAGCCTAATTTTTAGG-GTTCCTTGATGACAACTGAAAACGA-AAGATTTTAAGAAA
* * * *
507993 CTATGCTAGATTTTCAAGGGTTTCTTGATGAATAAG
257 CTAAGCTTGATTTTCAAGGATTTCTTGATGAGTAAG
* * * *
508029 TCATTCGGGCCATCAGTAAGTCTTTCAAGCATGATGCATAAATCCTTCGAGTCATCTATAAGTCT
1 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCT
* * * * * * *
508094 TTCGAGCAAGATGATAAGTACTTTGGGCCATCTATAAGACCTTTGAGTAGGATGTTTTCAAATGA
66 TTCGAGCAAGATGATAAGTCCTTCGGACCATCCATAAGACCTTCGGGAAGGATGTTTTCAAATGA
* * * * *
508159 ATTTTTAGAAACTAAGTCTAATTTTCAGGGGTTTCTTGATAATTATCTCCAAAGAATTTTTAAAG
131 GTTTTTAGAAACTAAGCCTGATTTTCAAGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAAG
** * * * * *
508224 GAAATTAAACCTAATTTTTAGGGTTCCTTGATGAGAACTAAAAACAAAAGATTTTAAGTAACTAA
196 GAAGCTAAGCCTAATTTTTAGGGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGAAACTAA
*
508289 G-TTGGATTTTCAAGGGTTTCTTGATGAGTAAG
261 GCTT-GATTTTCAAGGATTTCTTGATGAGTAAG
* * * * * *
508321 TTCTTCAGGCCATCAGTAAGTCTTTCGAGCATGATTCTTAAATCCATT-AGGTGATTTATAAGTC
1 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCC-TTCGGGTCATCTATAAGTC
* * * ** **
508385 TTTTGAGCAAGATAATAAGTCATTCGGGTCATCCATAACTCCTTCGGGTCAA--ATGTTTTCAAA
65 TTTCGAGCAAGATGATAAGTCCTTCGGACCATCCATAAGACCTTCGGG--AAGGATGTTTTCAAA
* * *
508448 TGAATTTTTAGAAACTAAGCTTGATTTTCAGGGGTTTCTTGATGATTATCTCCAAAGAATTTTTA
128 TGAGTTTTTAGAAACTAAGCCTGATTTTCAAGGGTTTCTTGATGATTATCTCCAAAGAATTTTTA
* * * *
508513 AAGGAAGCTTAGCCTAATTTTTAAGGGTTCCTTGACGACAACTGAAAACAAAAGAATTTAAGAAA
193 AAGGAAGCTAAGCCTAATTTTT-AGGGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGAAA
* * *
508578 CTACGCTAGATTTTCAAGGGTTTCTTGATGAGTAAG
257 CTAAGCTTGATTTTCAAGGATTTCTTGATGAGTAAG
* * * * ** *
508614 TCTTTCGGGCCATCAGTATGTCTTTCGAGCAAGATGTTTAAATTTTTTGGGTCATCTATAAGTCT
1 TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCT
* * * * *
508679 TTCGAGCAAGATGATAAGCCCTT-TGAGCCATCCATAAAACCTTCGGGATGGGTGTTTTCAA
66 TTCGAGCAAGATGATAAGTCCTTCGGA-CCATCCATAAGACCTTCGGGAAGGATGTTTTCAA
508740 CATTTCCTTC
Statistics
Matches: 14153, Mismatches: 3308, Indels: 3049
0.69 0.16 0.15
Matches are distributed among these distances:
265 9 0.00
266 2 0.00
268 1 0.00
269 1 0.00
270 3 0.00
271 1 0.00
272 11 0.00
273 44 0.00
274 50 0.00
275 96 0.01
276 163 0.01
277 148 0.01
278 233 0.02
279 277 0.02
280 247 0.02
281 198 0.01
282 201 0.01
283 173 0.01
284 75 0.01
285 126 0.01
286 233 0.02
287 99 0.01
288 94 0.01
289 102 0.01
290 198 0.01
291 780 0.06
292 2443 0.17
293 4122 0.29
294 417 0.03
295 207 0.01
296 45 0.00
297 83 0.01
298 89 0.01
299 166 0.01
300 71 0.01
301 88 0.01
302 170 0.01
303 36 0.00
304 30 0.00
305 15 0.00
306 28 0.00
307 10 0.00
308 26 0.00
309 32 0.00
310 34 0.00
311 56 0.00
312 51 0.00
313 64 0.00
314 62 0.00
315 58 0.00
316 67 0.00
317 84 0.01
318 48 0.00
319 67 0.00
320 48 0.00
321 52 0.00
322 43 0.00
323 36 0.00
324 22 0.00
325 50 0.00
326 31 0.00
327 42 0.00
328 108 0.01
329 228 0.02
330 81 0.01
331 113 0.01
332 42 0.00
333 64 0.00
334 167 0.01
335 102 0.01
336 41 0.00
337 37 0.00
338 54 0.00
339 51 0.00
340 28 0.00
341 95 0.01
342 22 0.00
343 7 0.00
344 18 0.00
345 15 0.00
346 11 0.00
347 3 0.00
348 8 0.00
349 6 0.00
350 37 0.00
351 105 0.01
352 38 0.00
353 13 0.00
354 8 0.00
355 9 0.00
356 6 0.00
357 2 0.00
358 7 0.00
359 3 0.00
360 3 0.00
361 11 0.00
362 6 0.00
363 2 0.00
364 2 0.00
365 2 0.00
366 2 0.00
367 3 0.00
368 11 0.00
369 2 0.00
370 3 0.00
371 4 0.00
372 5 0.00
373 1 0.00
374 2 0.00
375 1 0.00
376 6 0.00
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.34
Consensus pattern (292 bp):
TCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCGGGTCATCTATAAGTCT
TTCGAGCAAGATGATAAGTCCTTCGGACCATCCATAAGACCTTCGGGAAGGATGTTTTCAAATGA
GTTTTTAGAAACTAAGCCTGATTTTCAAGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAAG
GAAGCTAAGCCTAATTTTTAGGGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGAAACTAA
GCTTGATTTTCAAGGATTTCTTGATGAGTAAG
Found at i:491250 original size:584 final size:584
Alignment explanation
Indices: 487586--489497 Score: 2154
Period size: 581 Copynumber: 3.3 Consensus size: 584
487576 ACTAAGGATG
* * *
487586 ATTTTTA-GGGTTCCTTGATGAGAACTAAAAATGAAAGATTTTAAGAAACTAAGCTTGATTTTCA
1 ATTTTTAGGGGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGAAACTAAGCTTGATTTTCA
* * * *
487650 AGGGTTTCTTGATGAGTAAGTACTTCGAGACATCAGTAAGTCTTTCGAGCATGGTGCTTAAATCC
66 AGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCC
* * * * * ** * * * **
487715 ATCAAGTCATTTATAAGTCTTTCGAGTAAGATAAAAAGTCATTCGGATCATCCATAACTCCTTCG
131 TTC-GGTCCTCTATAAGTCTTTCGAGCAAGATGGAAAGTCCTTCAGACCATCCATAAGACCTTCG
* * * *
487780 GGTAAGATGTTTTCAAATGACTTTTTAGAAACTAAGCCTAATTTTCAGGGGTTTCTTGATGATTA
195 GGCAAGATGTTTTCAAATGAGTTTTTAGAAACTAAACCTAATTTTCAGAGGTTTCTTGATGATTA
* *
487845 TCTCCAAAGAATTTTTAAAGGAAGTTAAGCCTAATATTT-AGGGTTTCCTTGATGAAAAC-ATAA
260 TCTCCAAAGAATTTTTAAAGGAAGCTAAGCCTAAT-TTTAAGGG-TTCCTTGATGACAACTA-AA
* * * * * * *
487908 AATGAAAGATTTTAAGAAACTTAGTTTGATTTTCAAGTGTTTCTT-TTAGACTAAATCCTTCGGG
322 AACGAAAGATTTTAAGAAACTAAGCTTGATTTTCAAGAGTTTCTTGAT-GAGTAAGTCCTTCGGG
* * * *
487972 CCATCAATAAGTCTTTCAAGCATGATGCTTAAATCCTTT-GGTTCAACTATAAGTCTTTCTAGCA
386 CCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTTAGG-TCATCTATAAGTCTTTCGAGCA
* * * * ** *
488036 AGATGGTAAGTCCTTGGGA-CATCCGTAAGACGTTTAGGTGGGAT-TCTTTCAAATTAGTTTTTA
450 AGATGGTAAGTCCTTCGGACCATCCATAAGACCTTCAGGCAGGATGT-TTTCAAATGAGTTTTTA
* * * ** * * *
488099 GAAACTAAGCATGGTTTTCAGGGGTTTCTTGATGATTATCTCCAAAGAACCTCTAACGGAAGCTA
514 GAAACTAAGCCTGATTTTCAGGGGTTTCTTGATGATTATCTCTAAAGAATTTTTAAAGAAAGCTA
488164 AGCCTA
579 AGCCTA
* *
488170 ATTTTTAGGGGTTCCTTGATGACAACAGAAAATGAAAGATTTTAAGAAACTAAGCTTGATTTTCA
1 ATTTTTAGGGGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGAAACTAAGCTTGATTTTCA
* * * * * * *
488235 TGAGTTTCTTGACGAGTATGTCCTTCGGGCTATCAGTAAGTCTTTCGAGCATGATACTTAAGTCC
66 AGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCC
* * * *
488300 TTCGGTTCCTCTATAATTCTTTTGAGCAAGATGGTAAGTCCTTCAGACCATCTATAAGACCTTCG
131 TTCGG-TCCTCTATAAGTCTTTCGAGCAAGATGGAAAGTCCTTCAGACCATCCATAAGACCTTCG
* * ** *
488365 GGCAAGATGTTTTCAAATGAGTTTTTAGAAGCTAAGCCTGGTTTTCAGAGGTTTTTTGATGATTA
195 GGCAAGATGTTTTCAAATGAGTTTTTAGAAACTAAACCTAATTTTCAGAGGTTTCTTGATGATTA
* * *
488430 TCTCCAAATAAATTTTAAAGGAAGCTAAGCCTAATTTTAAGGGTTCCTTGATGATAACTAAAAAC
260 TCTCCAAAGAATTTTTAAAGGAAGCTAAGCCTAATTTTAAGGGTTCCTTGATGACAACTAAAAAC
* * * * **
488495 CAAAGATTATAAGAAACTAA-CTTCATTTTCAAGAGCTTCTTGATGAGTAAGTGTTTCGGGCCAT
325 GAAAGATTTTAAGAAACTAAGCTTGATTTTCAAGAGTTTCTTGATGAGTAAGTCCTTCGGGCCAT
* ** *
488559 CAGTAAGTCTTTCGA-CGATGATGCGTAAATCCTTCGGGTCATCTATAAGTCTTTCGAGGAAGAT
390 CAGTAAGTCTTTCGAGC-ATGATGCTTAAATCCTTTAGGTCATCTATAAGTCTTTCGAGCAAGAT
* * * * * * *
488623 GGTAAGCCCTTTGGACCATCCATAGGACCTTGAGGTAGGATTTTTTCAAATGAGTGTTTAGAAAC
454 GGTAAGTCCTTCGGACCATCCATAAGACCTTCAGGCAGGATGTTTTCAAATGAGTTTTTAGAAAC
* *
488688 TAAGCCT-AATTTCTAGGGGTTTCTTGATGATTATCTGC-AAAGAATTTTCAAAGAAAGCTAAGC
519 TAAGCCTGATTTTC-AGGGGTTTCTTGATGATTATCT-CTAAAGAATTTTTAAAGAAAGCTAAGC
488751 CTA
582 CTA
* * *
488754 ATTTTTAGGGGTTCTTTGATGACAACTGAAAACGAAAGATGTTAAGAAACTATGCTTGATTTTCA
1 ATTTTTAGGGGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGAAACTAAGCTTGATTTTCA
* * * * *
488819 AGGGTTTCTTGATAAGTAAGTCCTTCGGGACATCAATAAGTCTTTTGAGCATGATGATTAAATCC
66 AGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCC
* * * * *
488884 -TCGGGTCTTCTATTAGTCTTT-GAGCAAGATGGTAAGTCCTTCAGACCATCCGTAAAACCTTCG
131 TTC-GGTCCTCTATAAGTCTTTCGAGCAAGATGGAAAGTCCTTCAGACCATCCATAAGACCTTCG
* * * *
488947 GGCAGGATATTTTCAAATGAGTTTTTATAAACTAAACTTAAGTTTT-AG-GGTTTCTTGATGATT
195 GGCAAGATGTTTTCAAATGAGTTTTTAGAAACTAAACCTAA-TTTTCAGAGGTTTCTTGATGATT
* ** * * * * *
489010 ATCTCCAAAGAATTTTGAAATAAAGCAAAGCTTAATTTTTAGGGGTTCCTTGATAATAACTAAAA
259 ATCTCCAAAGAATTTTTAAAGGAAGCTAAGCCTAA-TTTTAAGGGTTCCTTGATGACAACTAAAA
** * * * *
489075 ATAAAATATTTTAAGAAACTAAGCTTGATTTTCAAGGGTTTCTTGAAGAGTAAATCCTTCGGGCC
323 ACGAAAGATTTTAAGAAACTAAGCTTGATTTTCAAGAGTTTCTTGATGAGTAAGTCCTTCGGGCC
* * * * *
489140 ATCAGTAACTCTTTCGAGTATAATGCTTAAAT-CTATCAGGTCATCTAT-A-TCTTTCTAGCAAG
388 ATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCT-TTAGGTCATCTATAAGTCTTTCGAGCAAG
** * * * ** * * * * *
489202 ATAATAAGTCATTCGGGCCATTCATAACTCCTTCGGGCAAGATGTTTTCAAATGAATTTATAAAA
452 ATGGTAAGTCCTTCGGACCATCCATAAGACCTTCAGGCAGGATGTTTTCAAATGAGTTTTTAGAA
* *
489267 ACTAAGCCTGATTTTTAGGGGGTTCTTGATGATTATCTCTAAAGAATTTTTAAATG-AAGCTAAG
517 ACTAAGCCTGATTTTCAGGGGTTTCTTGATGATTATCTCTAAAGAATTTTTAAA-GAAAGCTAAG
489331 CCTA
581 CCTA
* *
489335 ATTTTTAGGGGTTCCTTGATGGCAACTGAAAATGAAAGATTTTAAGAAACTAAGCTTGATTTT-A
1 ATTTTTAGGGGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGAAACTAAGCTTGATTTTCA
* * * * *
489399 TAGGTTTTCTTGATGAGTAGGTCCTTCGGACCATCAATAAGTCTTTCGAGCATGATACTTAAATC
66 -AGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATC
* ** *
489464 CTTCGGGCCATCGGTAAGTCTTTCGAGCATGATG
130 CTTCGGTCC-TCTATAAGTCTTTCGAGCAAGATG
489498 CTTAAATCCT
Statistics
Matches: 1124, Mismatches: 180, Indels: 49
0.83 0.13 0.04
Matches are distributed among these distances:
580 2 0.00
581 272 0.24
582 140 0.12
583 204 0.18
584 254 0.23
585 252 0.22
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (584 bp):
ATTTTTAGGGGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGAAACTAAGCTTGATTTTCA
AGGGTTTCTTGATGAGTAAGTCCTTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCC
TTCGGTCCTCTATAAGTCTTTCGAGCAAGATGGAAAGTCCTTCAGACCATCCATAAGACCTTCGG
GCAAGATGTTTTCAAATGAGTTTTTAGAAACTAAACCTAATTTTCAGAGGTTTCTTGATGATTAT
CTCCAAAGAATTTTTAAAGGAAGCTAAGCCTAATTTTAAGGGTTCCTTGATGACAACTAAAAACG
AAAGATTTTAAGAAACTAAGCTTGATTTTCAAGAGTTTCTTGATGAGTAAGTCCTTCGGGCCATC
AGTAAGTCTTTCGAGCATGATGCTTAAATCCTTTAGGTCATCTATAAGTCTTTCGAGCAAGATGG
TAAGTCCTTCGGACCATCCATAAGACCTTCAGGCAGGATGTTTTCAAATGAGTTTTTAGAAACTA
AGCCTGATTTTCAGGGGTTTCTTGATGATTATCTCTAAAGAATTTTTAAAGAAAGCTAAGCCTA
Found at i:491860 original size:42 final size:42
Alignment explanation
Indices: 491798--491906 Score: 155
Period size: 42 Copynumber: 2.6 Consensus size: 42
491788 GATGAGTAGG
*
491798 TCCTTCGGACCATCAATAAGTCTTTCGAGCATGATACTTAAA
1 TCCTTCGGGCCATCAATAAGTCTTTCGAGCATGATACTTAAA
** *
491840 TCCTTCGGGCCATCGGTAAGTCTTTCGAGCATGATGCTTAAA
1 TCCTTCGGGCCATCAATAAGTCTTTCGAGCATGATACTTAAA
* * *
491882 TCCTTCGAGTCATCTATAAGTCTTT
1 TCCTTCGGGCCATCAATAAGTCTTT
491907 TGAGAAAGAT
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 59 1.00
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.34
Consensus pattern (42 bp):
TCCTTCGGGCCATCAATAAGTCTTTCGAGCATGATACTTAAA
Found at i:496364 original size:55 final size:54
Alignment explanation
Indices: 496239--496374 Score: 123
Period size: 55 Copynumber: 2.5 Consensus size: 54
496229 TTTTCAAATG
* * * * *
496239 AATTTTAAAACTAAGCCTAATTTTCAGGGGTTTCTTGATGATTATCTGCAAAGA
1 AATTTTAAGACTAAGCCTAATTTTCAGGGGTTCCTTGATGATCAACTGAAAAGA
* ** *
496293 ATTTTTAAAGGTTAAGCCTAATTTTTA-GGGTTCCTTGATGA-CAACTGAAAATGA
1 AATTTT-AAGACTAAGCCTAATTTTCAGGGGTTCCTTGATGATCAACTGAAAA-GA
* *
496347 ACGATTTTAAGACTAAGCTTGATTTTCA
1 A--ATTTTAAGACTAAGCCTAATTTTCA
496375 AGTGTTTCTT
Statistics
Matches: 63, Mismatches: 15, Indels: 7
0.74 0.18 0.08
Matches are distributed among these distances:
53 7 0.11
54 21 0.33
55 31 0.49
56 4 0.06
ACGTcount: A:0.33, C:0.12, G:0.17, T:0.38
Consensus pattern (54 bp):
AATTTTAAGACTAAGCCTAATTTTCAGGGGTTCCTTGATGATCAACTGAAAAGA
Found at i:497451 original size:56 final size:55
Alignment explanation
Indices: 497347--497451 Score: 151
Period size: 56 Copynumber: 1.9 Consensus size: 55
497337 AAGATGTTTT
*
497347 CAAATGAATTTTTAAAAACTAAGCCTAATTTTCAAGGGTTTCTTGATGATTTCTG
1 CAAATGAATTTTTAAAAACTAAGCCTAATTTTCAAGGGTTCCTTGATGATTTCTG
*
497402 CAAA-GAATTTTTAAAGGAAGCTAAGCCTAATTTT-TAGGGTTCCTTGATGA
1 CAAATGAATTTTTAAA--AA-CTAAGCCTAATTTTCAAGGGTTCCTTGATGA
497452 CAACTGAAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 5
0.87 0.04 0.10
Matches are distributed among these distances:
54 11 0.24
55 4 0.09
56 16 0.36
57 14 0.31
ACGTcount: A:0.33, C:0.12, G:0.17, T:0.37
Consensus pattern (55 bp):
CAAATGAATTTTTAAAAACTAAGCCTAATTTTCAAGGGTTCCTTGATGATTTCTG
Found at i:498014 original size:558 final size:564
Alignment explanation
Indices: 495427--499106 Score: 3838
Period size: 558 Copynumber: 6.6 Consensus size: 564
495417 CTTATTCTAG
* * * * * *
495427 GGGTTTCTTTATGATTACCTTCAAAGAATTTTTAAAG-AATATAAGCCTACTTTTTAGGTTCCTT
1 GGGTTTCTTGATGATTATCTCCAAAGAATATTTAAAGAAATCTAAGCCTAATTTTTAGGTTCCTT
* * * * *
495491 GATGACAACTGAAAAA-AAAGATTTAAAGAAACT-ATCTAGATTTTCAAGGGTTTCCTT-ATGTG
66 GATGACAACT-AAAAAGAAAGATTTTAAGAAACTAAGCTTGATTTTCAAGAGTTT-CTTGATGAG
* * * * *
495553 TAAGTCCTTCAGGCCTTCAGAAAGTC-TTC-ATCATGATGCTTAAATCCTTCGGTCTTGTATAAG
129 TAAGTCCTTCAGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCATTCGGTC-TCTATAAG
* ** * * *
495616 TCTTTCT-AGCAATATCATAAGT-CTT-GAGACCATCCGTGAA-ACCTTGGGGATGATGTTTTCA
193 TCTTT-TGAG-AAAATGGTAAGTCCTTCG-GACCATCCAT-AACACCTT-CGGAAGATGTTTT-A
* * * *
495677 AATGAGTTTTATAAAACTAA-ACTTATTTTTAGGGTTTCTTGATGATTATCTCTAAAGAATTTTT
252 AATGAGTTTT-T-AAACTAAGCCTGATTTTCAGGGTTTCTTGATGATTATCTCCAAAGAATTTTT
* *
495741 AAAGGAAGCT-AGCCTAATTTTTAGGGTTCCTTGATGA-AACTGAAAACGAAAGATTTTAAGAAA
315 AAA-GAAGTTAAGCCTAATTTTTAGGGTTCCTTGATGACAACTGAAAATGAAAGA-TTTAAG-AA
*
495804 CTAAGCTTGA-TTTCAAGTGTTTCTTG-AGCA--AGTCCTT-TGCCATC-ATAAGTCTTT-GA--
377 CTAAGCTTGATTTTCAAGTGTTTCTTGAAG-AGTAGTCCTTCAGCCATCAATAAGTCTTTCGAGC
* ** * *
495860 ATGATGCGTAAATCC-T---TCCTCTATAAGTCTTTCGAGCAAGGT-ATAAGTCCTTGGGGCCAT
441 ATGATGCTTAAATCCTTGGGTCAACTATAAGTCTTTCGAGCAAGATGATAAGTCCTTGGGACCAT
* * * * * * *
495920 CCATAAGACCTT-TAGTATGATGTTTTCAAATTAGTTTT-TAAACTAAGTCTGATTTTCA
506 CCATAAGACCTTCGAGTAGGATG-TTTCAAATAAGTTTTAGAAACTAAGCCTGGTTTTTA
* * * *
495978 GGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAAGGAATCTAAGCCTAATTTAT-GATTCCT
1 -GGGTTTCTTGATGATTATCTCCAAAGAATATTTAAAGAAATCTAAGCCTAATTTTTAGGTTCCT
* * * * * *
496042 TGATGAGAACCTAAAACGAAAGATTTTAAGACACTAAGCTTGATTTACAAGGGTATCTTGATGAG
65 TGATGACAA-CTAAAAAGAAAGATTTTAAGAAACTAAGCTTGATTTTCAAGAGTTTCTTGATGAG
* * * *
496107 TAAGTCCTTCAGGCCATTAGTAAGTC-TTCGAGGATGATGCATAAATCCATTAGGTCATCTATAA
129 TAAGTCCTTCAGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAAT-CATTCGGTC-TCTATAA
* * ** * * *
496171 GTCTTTCGAGCAAGATAATAAGTCATTCGGGCCATCCATAACTCCTTCGGGTAAGATGTTTTCAA
192 GTCTTTTGAG-AAAATGGTAAGTCCTTCGGACCATCCATAACACCTTC-GG-AAGATGTTTT-AA
* * * *
496236 ATGAATTTTAAAACTAAGCCTAATTTTCAGGGGTTTCTTGATGATTATCTGCAAAGAATTTTTAA
253 ATGAGTTTTTAAACTAAGCCTGATTTTCA-GGGTTTCTTGATGATTATCTCCAAAGAATTTTTAA
*
496301 AG--GTTAAGCCTAATTTTTAGGGTTCCTTGATGACAACTGAAAATGAACGATTTTAAG-ACTAA
317 AGAAGTTAAGCCTAATTTTTAGGGTTCCTTGATGACAACTGAAAATGAAAGA-TTTAAGAACTAA
*
496363 GCTTGATTTTCAAGTGTTTCTTGAAGGGTAAGTCCTTCAGCCATCAATAAGTCTTTCGAGCATGA
381 GCTTGATTTTCAAGTGTTTCTTGAAGAGT-AGTCCTTCAGCCATCAATAAGTCTTTCGAGCATGA
* *
496428 TGCTTAAATCCTTGGGTTCAACTAT-AGACTTTCGAGCAAGATGGTAAGTCCTTGGGACCATCCA
445 TGCTTAAATCCTTGGG-TCAACTATAAGTCTTTCGAGCAAGATGATAAGTCCTTGGGACCATCCA
* * *
496492 TAAGGCCTTCGGGCAGGATGTTTTC-AA-AAGATTTTAGAAACTAAGCCTGGTTTTTA
509 TAAGACCTTCGAGTAGGATG-TTTCAAATAAG-TTTTAGAAACTAAGCCTGGTTTTTA
* *
496548 GGGGTTCTTGATGATTATCTCGAAAGAATATTTAAAGAAA--T--GCCTAATTTTTAGTGTTCCT
1 GGGTTTCTTGATGATTATCTCCAAAGAATATTTAAAGAAATCTAAGCCTAATTTTTAG-GTTCCT
* *
496609 TGATGACAACTAAAAAAAAAGA-TTTAAGAAACTAAGCTTGATTTTCAAGAGTTTATTGATGAGT
65 TGATGACAACTAAAAAGAAAGATTTTAAGAAACTAAGCTTGATTTTCAAGAGTTTCTTGATGAGT
* * * * * *
496673 AAGTTCTGCAAGCCATCAGTAAGTCTTT-GAGCATGATACTTAAATCCTTCGGT-TCCTATAATT
130 AAGTCCTTCAGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCATTCGGTCT-CTATAAGT
* *
496736 CTTTTGAGAAAATGGT-A-TCCTT--G-CCATCCATAAGACCTTCGGAAGAT-TTTTAAATGCGT
194 CTTTTGAGAAAATGGTAAGTCCTTCGGACCATCCATAACACCTTCGGAAGATGTTTTAAATGAGT
* * * *
496795 TTTTAGGAAGTAAGCCTGGTTTTCAGGG-TTCTTGATAATTATCTCCAAAGAATTTTTAAAGGAG
259 TTTTA--AACTAAGCCTGATTTTCAGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAAGAAG
* * **
496859 TTAAG----ATTTTTAGGGATCCTTGATGACAACTG-AAACGAAAG-TTATAAGAAACTAAAATT
322 TTAAGCCTAATTTTTAGGGTTCCTTGATGACAACTGAAAATGAAAGATT-TAAG-AACTAAGCTT
* * * * *
496918 -ATTTTGAAGAGTTTCTTGATGAGTAAGTCCTTCGGGCCATCAGTAAGTCTTT-GAGCATGATGC
385 GATTTTCAAGTGTTTCTTGAAGAGT-AGTCCTTC-AGCCATCAATAAGTCTTTCGAGCATGATGC
* * * *
496981 TTAAATCCTTCGAGTCATCTATAAGTCTTTCGAGCAAGATGATAAGTACTTGGG-CCATACATAA
448 TTAAATCCTT-GGGTCAACTATAAGTCTTTCGAGCAAGATGATAAGTCCTTGGGACCATCCATAA
* * * * * *
497045 GACCTTCGAGTATGATATTTTCAAATGAGTTTTA-AAACTAAGTCTGATTTTCA
512 GACCTTCGAGTAGGAT-GTTTCAAATAAGTTTTAGAAACTAAGCCTGGTTTTTA
* *
497098 GGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAAGGAATCTAAGCCTAATTTTTAGGGTTCC
1 -GGGTTTCTTGATGATTATCTCCAAAGAATATTTAAAGAAATCTAAGCCTAATTTTTA-GGTTCC
* * * * * * *
497163 TTGATGAGAACTTAAAACGAAAGATTTTAAGACACTAAGC-TGATTTACAAGGGTATCTTGTTGA
64 TTGATGACAAC-TAAAAAGAAAGATTTTAAGAAACTAAGCTTGATTTTCAAGAGTTTCTTGATGA
* * * * *
497227 GTAAGTCCTTTAGGCCATTAGTAAGTCTTTCGAGGATGATGTTTAAAATCCATTAGGTCATCTAT
128 GTAAGTCCTTCAGGCCATCAGTAAGTCTTTCGAGCATGATGCTT-AAAT-CATTCGGTC-TCTAT
* * * *
497292 AAGTCTTTCGAG-CAA--GTAAGT-CAT--G-CCATCC-TAACTCCTTCGGGTAAGATGTTTTCA
190 AAGTCTTTTGAGAAAATGGTAAGTCCTTCGGACCATCCATAACACCTTC-GG-AAGATGTTTT-A
* * *
497349 AATGAATTTTTAAAAACTAAGCCTAATTTTCAAGGGTTTCTTGATGATT-TCTGCAAAGAATTTT
252 AATGAGTTTTT--AAACTAAGCCTGATTTTC-AGGGTTTCTTGATGATTATCTCCAAAGAATTTT
* *
497413 TAAAGGAAGCTAAGCCTAATTTTTAGGGTTCCTTGATGACAACTGAAAATGAACGATTTAAGACA
314 TAAA-GAAGTTAAGCCTAATTTTTAGGGTTCCTTGATGACAACTGAAAATGAAAGATTTAAGA-A
*
497478 CTAAGCTTGATTTTCAAGTGTTTCTTGAAGGGT-GTCCTTCAGCCATCAATAAGTCTTTCGAGCA
377 CTAAGCTTGATTTTCAAGTGTTTCTTGAAGAGTAGTCCTTCAGCCATCAATAAGTCTTTCGAGCA
* *
497542 TGATGCTTAAATCCTTGGGTTCAACTAT-AGTCTTTCCAGCAAGATGGTAAGTCCTTGGGACCAT
442 TGATGCTTAAATCCTTGGG-TCAACTATAAGTCTTTCGAGCAAGATGATAAGTCCTTGGGACCAT
* * *
497606 -CATAAGGCCTTCGGGCAGGATGTTTCAAA-AAGTTTTAGAAACTAAGCCTGGTTTTTA
506 CCATAAGACCTTCGAGTAGGATGTTTCAAATAAGTTTTAGAAACTAAGCCTGGTTTTTA
* *
497663 AGGTTTCTTGATGATTATC-CGAAAGAA-ATTTAAAGAAAGT-TAAGCCTAATTTTTAGGTTCCT
1 GGGTTTCTTGATGATTATCTCCAAAGAATATTTAAAGAAA-TCTAAGCCTAATTTTTAGGTTCCT
*
497725 TGATGACAACTAAAAAGAAAGATTTTAAGAAACTAAGCTTGATTTTCAAGAGTTTATTGATGAGT
65 TGATGACAACTAAAAAGAAAGATTTTAAGAAACTAAGCTTGATTTTCAAGAGTTTCTTGATGAGT
* *
497790 AAGTTCCTTCAAGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCATTCGGT-TCTATAATT
130 AAG-TCCTTCAGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCATTCGGTCTCTATAAGT
* * *
497854 CTTTTGAGAAAACGGTAAGACCTTCGGACCATCCATAA-ACCTTCGGAAGATGTTTT-AATGCGT
194 CTTTTGAGAAAATGGTAAGTCCTTCGGACCATCCATAACACCTTCGGAAGATGTTTTAAATGAGT
* *
497917 TTTTAAACTAAG-CTGGTTTTCAGGGGTTTCTTGATAATTATCTCCAAAGAATTTTTAAAGAAGT
259 TTTTAAACTAAGCCTGATTTTCA-GGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAAGAAGT
* * ** *
497981 TAAGCCTAA-TTTTAGGGGATCCTTGATGACAACTGAAAA-GAAAGATATAAGAACTAAAATTAA
323 TAAGCCTAATTTTTA-GGGTTCCTTGATGACAACTGAAAATGAAAGATTTAAGAACTAAGCTTGA
* * * * * *
498044 TTTTGAAGAGTTTCTTGATGAGTAAGTCCTT--GACATCAGTAAGTCTTTCGAGCATGATCCTTA
387 TTTTCAAGTGTTTCTTGAAGAGT-AGTCCTTCAGCCATCAATAAGTCTTTCGAGCATGATGCTTA
* * *
498107 AATCCTTCGAGTC-TCTATAAGTCTTTCGAGCAAGATAATAAGTCCTTTGGG-----CCATAAGA
451 AATCCTT-GGGTCAACTATAAGTCTTTCGAGCAAGATGATAAGTCC-TTGGGACCATCCATAAGA
* * * * *
498166 CCTTCGAGTAGGATGTTTCAAATGAGTTTT-TAAACTAAGTCTGATTTTCA
514 CCTTCGAGTAGGATGTTTCAAATAAGTTTTAGAAACTAAGCCTGGTTTTTA
* *
498216 -GGTTTCTTGAT-ATTATCTCCAAAGAATTTTTAAAGGAATCTAAGCCTAATTTTTAGGGGTTCC
1 GGGTTTCTTGATGATTATCTCCAAAGAATATTTAAAGAAATCTAAGCCTAATTTTTA--GGTTCC
* * * * * *
498279 TTGATGAGAACTTAAAACGAAAGATTTTAAG--ACTAACCTAGATTTAC-A-AGTATCTTGATGA
64 TTGATGACAAC-TAAAAAGAAAGATTTTAAGAAACTAAGCTTGATTTTCAAGAGTTTCTTGATGA
* * * *
498340 GTAAGTCCTTCAGGCCATTAGTAAGTCTTTCGAG--GGATGCTTAAATCCATTAGGTATCTATAA
128 GTAAGTCCTTCAGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAAT-CATTCGGTCTCTATAA
* * * * * * * *
498403 GTCTTTCGAGCAGA-GATAAGTCATTCGGGCCATCCATAACTCCTTCGAGTAAGATGTTTCAAAT
192 GTCTTTTGAGAAAATGGTAAGTCCTTCGGACCATCCATAACACCTTCG-G-AAGATGTTTTAAAT
* *
498467 GAATTTTTAAAACTAAGCCT-ATTTTCAGGGTTTCTCTGATGATTATCTGCAAAGAATTTTTCAA
255 GAGTTTTT-AAACTAAGCCTGATTTTCAGGGTTTCT-TGATGATTATCTCCAAAGAATTTTT-AA
*
498531 AGGAAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGA-AACTGAAAATGAAAGATTTAAGACACT
317 A-GAAGTTAAGCCTAATTTTTA-GGGTTCCTTGATGACAACTGAAAATGAAAGATTTAAGA-ACT
498595 AAGCTTGATTTTCAAG-G-TTCTTG-A-AGTAAGTCCTTCAAGCCATCAATAAGTCTTTCGAGCA
379 AAGCTTGATTTTCAAGTGTTTCTTGAAGAGT-AGTCCTTC-AGCCATCAATAAGTCTTTCGAGCA
*
498656 TGATGCTTAAATCCTTGGGTCAACTATAAGTCTTTCGAACAAGAT-ATAAGTCCTTGGGACCATC
442 TGATGCTTAAATCCTTGGGTCAACTATAAGTCTTTCGAGCAAGATGATAAGTCCTTGGGACCATC
* *
498720 CAT-A-ACCTTCGGGTA-GATGTTTCAAA-AATTTTTAGAAACTAAGCCTGGTTTTT-
507 CATAAGACCTTCGAGTAGGATGTTTCAAATAAGTTTTAGAAACTAAGCCTGGTTTTTA
*
498773 GGGTTTCTTGATGATTATC-CGAAAGAATATTTAAAGAAAGT-T-AGCCTAATTTTTAGGTGTTC
1 GGGTTTCTTGATGATTATCTCCAAAGAATATTTAAAGAAA-TCTAAGCCTAATTTTTA-G-GTTC
498835 CTTGATGACAACTGAAAAAAAGAAAGATTTTAAGAAACTAAGCTTGATTTTC-A-AGTTT-TTGA
63 CTTGATGACAACT---AAAAAGAAAGATTTTAAGAAACTAAGCTTGATTTTCAAGAGTTTCTTGA
* * * *
498897 TGAGTAAGTTCTTCAGGCCATCAGTAAGTCTTTCTAGCATGATACTTAAATC-TTCGGTCCTCCA
125 TGAGTAAGTCCTTCAGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCATTCGGT-CTCTA
* *
498961 TAATTC-TTTGAGAAAGATGGTAAGTCCTTCGGACCATCCACAA-ACCTTCAGGAA-AT-TTTTA
189 TAAGTCTTTTGAGAAA-ATGGTAAGTCCTTCGGACCATCCATAACACCTTC-GGAAGATGTTTT-
* *
499022 AAATG-GTTTTTAGGAA-TAAGCCTGGTTTT-AGGGGTTTCTTGATGATTATCTCCAAAGAATAT
251 AAATGAGTTTTTA--AACTAAGCCTGATTTTCA-GGGTTTCTTGATGATTATCTCCAAAGAATTT
*
499084 TT-AAGAAATTAAGCCTAATTTTT
313 TTAAAGAAGTTAAGCCTAATTTTT
499107 GATTCGAGCA
Statistics
Matches: 2636, Mismatches: 332, Indels: 317
0.80 0.10 0.10
Matches are distributed among these distances:
548 2 0.00
549 15 0.01
550 133 0.05
551 178 0.07
552 90 0.03
553 153 0.06
554 89 0.03
555 164 0.06
556 262 0.10
557 195 0.07
558 334 0.13
559 119 0.05
560 113 0.04
561 132 0.05
562 122 0.05
563 51 0.02
564 48 0.02
565 117 0.04
566 80 0.03
567 80 0.03
568 35 0.01
569 97 0.04
570 27 0.01
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (564 bp):
GGGTTTCTTGATGATTATCTCCAAAGAATATTTAAAGAAATCTAAGCCTAATTTTTAGGTTCCTT
GATGACAACTAAAAAGAAAGATTTTAAGAAACTAAGCTTGATTTTCAAGAGTTTCTTGATGAGTA
AGTCCTTCAGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCATTCGGTCTCTATAAGTCT
TTTGAGAAAATGGTAAGTCCTTCGGACCATCCATAACACCTTCGGAAGATGTTTTAAATGAGTTT
TTAAACTAAGCCTGATTTTCAGGGTTTCTTGATGATTATCTCCAAAGAATTTTTAAAGAAGTTAA
GCCTAATTTTTAGGGTTCCTTGATGACAACTGAAAATGAAAGATTTAAGAACTAAGCTTGATTTT
CAAGTGTTTCTTGAAGAGTAGTCCTTCAGCCATCAATAAGTCTTTCGAGCATGATGCTTAAATCC
TTGGGTCAACTATAAGTCTTTCGAGCAAGATGATAAGTCCTTGGGACCATCCATAAGACCTTCGA
GTAGGATGTTTCAAATAAGTTTTAGAAACTAAGCCTGGTTTTTA
Found at i:499857 original size:59 final size:60
Alignment explanation
Indices: 499742--499901 Score: 151
Period size: 59 Copynumber: 2.7 Consensus size: 60
499732 GGGTGTTTTC
* * ** * *
499742 AACATTTCCTTCACTCGATTCATAGCATTTCGAATCAGTGACGCCTCACCATA-GGGGAT
1 AACATTTCCTTCACTCAATTCACAGCATTTCGAATCAGCAACGCCCCACCAGAGGGGGAT
** * * * *
499801 AACATTTCCTTTTCTCAATTCACGGCATTTCGAATCAGCAATGCCCCACTAGAGGGGGTT
1 AACATTTCCTTCACTCAATTCACAGCATTTCGAATCAGCAACGCCCCACCAGAGGGGGAT
** * * *
499861 AACATTTCCTATGGCTCGATTCACAACACTTCGAATCAGCA
1 AACATTTCCT-TCACTCAATTCACAGCATTTCGAATCAGCA
499902 TAAGTCCTTC
Statistics
Matches: 81, Mismatches: 18, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
59 42 0.52
60 15 0.19
61 24 0.30
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.29
Consensus pattern (60 bp):
AACATTTCCTTCACTCAATTCACAGCATTTCGAATCAGCAACGCCCCACCAGAGGGGGAT
Found at i:500268 original size:20 final size:19
Alignment explanation
Indices: 500243--500280 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
500233 TCTTGACGAT
500243 TAAGTCCTTCGAGCCATCAA
1 TAAGTCCTTCGAG-CATCAA
*
500263 TAAGTCTTTCGAGCATCA
1 TAAGTCCTTCGAGCATCA
500281 TGCTTAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (19 bp):
TAAGTCCTTCGAGCATCAA
Found at i:501635 original size:59 final size:59
Alignment explanation
Indices: 501543--501699 Score: 163
Period size: 59 Copynumber: 2.6 Consensus size: 59
501533 GGGTGTTTTC
* * * *
501543 AACATTTCCTTCACTCAATTCATAGCATTTCGAATCAGTGACGCCTCACCATAGGGGAT
1 AACATTTCCTTCACTCAATTCACAGCATTTCGAATCAGTAACGCCCCACCAGAGGGGAT
* * * * *
501602 AACATTTCC-TCTTCTCAATTCACGGCATTTCGAATCAGTAATGCCCCACTAGAGGGGTT
1 AACATTTCCTTC-ACTCAATTCACAGCATTTCGAATCAGTAACGCCCCACCAGAGGGGAT
** * * *
501661 AACATTTCCTATGGCTCGATTCACAACACTTCGAATCAG
1 AACATTTCCT-TCACTCAATTCACAGCATTTCGAATCAG
501700 CATAAGTCCT
Statistics
Matches: 80, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
58 2 0.03
59 56 0.70
60 21 0.26
61 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (59 bp):
AACATTTCCTTCACTCAATTCACAGCATTTCGAATCAGTAACGCCCCACCAGAGGGGAT
Found at i:502068 original size:20 final size:19
Alignment explanation
Indices: 502043--502080 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
502033 TCTTGACGAT
502043 TAAGTCCTTCGAGCCATCAA
1 TAAGTCCTTCGAG-CATCAA
*
502063 TAAGTCTTTCGAGCATCA
1 TAAGTCCTTCGAGCATCA
502081 TGCTTAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (19 bp):
TAAGTCCTTCGAGCATCAA
Found at i:503081 original size:292 final size:291
Alignment explanation
Indices: 500057--508723 Score: 6637
Period size: 293 Copynumber: 29.0 Consensus size: 291
500047 ATTCTCAAAT
* * * *
500057 CCTTCGGGTAAGATGTTTTCGAATGAATTTTTACAAACTAAGCTTGATTTTTCAGGGGTTTCTTG
1 CCTTCGAGTCAGATGTTTTCAAATGAATTTTTAGAAACTAAGCTTGA-TTTTCAGGGGTTTCTTG
*
500122 ATGATTATCTCCAAAGAATTTTTAAAGGAAGCTAAGCCTAATTTTTAGGGTTTCCTTGATGACAA
65 ATGATTATCTCCAAAGAATTTTTAAAGAAAGCTAAGCCTAATTTTTAGGG-TTCCTTGATGACAA
* ** * * * * * *
500187 ATGAAAATGAAAGATTTTAAGAAGCTAAGCTTTATTTTCATGTGTTTCTTGACGATTAAGTCCTT
129 CTGAAAACAAAAGATTTTAAGAAACTAAGCTTGATTTTCAAG-GTTTCTTGATGAGTAAGTTCTT
* * * * *
500252 CGAGCCATCAATAAGTCTTTCGAGCATCATGCTTAAATTCTTC-GGTTCAACTATAAGTCTTTCG
193 CGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCAGG-TCATCTATAAGTCTTTCG
* * *
500316 AACAAGATGATAAGTCCTT-GAGACCATCCATAAGA
257 AGCAAGATGATAAGTCCTTCG-GGCCATCCATAACA
* * * *
500351 CCTTCGAG-CAGGATGTTTTCAAATGCATTTTTAGAAACTAAGTTTGGTTTTCATGGGTTTCTTG
1 CCTTCGAGTCA-GATGTTTTCAAATGAATTTTTAGAAACTAAGCTTGATTTTCAGGGGTTTCTTG
* * * *
500415 AAGATTATCACCAAATAATTTTTAAAGGAAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGACAA
65 ATGATTATCTCCAAAGAATTTTTAAAGAAAGCTAAGCCTAATTTTTA-GGGTTCCTTGATGACAA
* * * * * *
500480 CTGAAAACGAAATATTTTAAGAAATTAAGCTTGATTTTCAAGTGTTTTTTTATGAGTAAGTCCTT
129 CTGAAAACAAAAGATTTTAAGAAACTAAGCTTGATTTTCAAG-GTTTCTTGATGAGTAAGTTCTT
* * * * *
500545 TGGGCCATCAGTAAGTCTTACAAGCATGATGCTTAAATCCTTC-GGTTCCTCTATAATTCTTTCG
193 CGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCAGG-TCATCTATAAGTCTTTCG
* * *
500609 AACAAGATGATAAGTCCTTCAGACCATCCAT-ACGA
257 AGCAAGATGATAAGTCCTTCGGGCCATCCATAAC-A
* ** * * *
500644 CCTTC-AGGCAAGATGTTTTCAAATGCGTTTTTAGAAACAAAGCTTGGTTTTCAGGGGTTTCATG
1 CCTTCGAGTC-AGATGTTTTCAAATGAATTTTTAGAAACTAAGCTTGATTTTCAGGGGTTTCTTG
500708 ATGATTATCTCCAAAGAATTTTTAAAGAAAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGACAA
65 ATGATTATCTCCAAAGAATTTTTAAAGAAAGCTAAGCCTAATTTTTA-GGGTTCCTTGATGACAA
* * * *
500773 CTGAAAACAAAAGATTCTAAGAAACTATGCTAGATTTTCAAGGGTTTCTTGATGAATAAG-TCAT
129 CTGAAAACAAAAGATTTTAAGAAACTAAGCTTGATTTTCAA-GGTTTCTTGATGAGTAAGTTC-T
* * * *
500837 TCGGGCCATCAATAAGTCTTTCAAGCATGATGTTTAAATCCTTC-GAGTCATCTATAAGTCTTTT
192 TCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCAG-GTCATCTATAAGTCTTTC
* * * *
500901 GAGCAAGATGATAAGTACTTTGGGCCATCAATAAGA
256 GAGCAAGATGATAAGTCCTTCGGGCCATCCATAACA
*
500937 CCTTCGAGT-AGGATGTTTTCAAATGAATTTTTAGAAACTAAG-TCTAATTTTCAGGGGTTTCTT
1 CCTTCGAGTCA-GATGTTTTCAAATGAATTTTTAGAAACTAAGCT-TGATTTTCAGGGGTTTCTT
* * * *
501000 GATGATTATCTCCAAAGAATTTTTAAAGAAAGTTAAACCTAAATTTTAGGGTTCCTTGATGAAAA
64 GATGATTATCTCCAAAGAATTTTTAAAGAAAGCTAAGCCTAATTTTTAGGGTTCCTTGATGACAA
* *
501065 CTGAAAACAAAAGATTTTAAGTAACTAAGCTTGATTTTCAAGGGATTCTTTGATGAGTAAGTTCT
129 CTGAAAACAAAAGATTTTAAGAAACTAAGCTTGATTTTCAA-GGTTTC-TTGATGAGTAAGTTCT
* * * *
501130 TCAGGCCATCAATAAGTCTTTCGAGCATGATGCTTAAATCCATCAGGTCATCTATAAGTCTTTTG
192 TCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCAGGTCATCTATAAGTCTTTCG
* * * * *
501195 AGCAAGATAATAAGTCATTCGCGTCATCCATAACT
257 AGCAAGATGATAAGTCCTTCGGGCCATCCATAACA
*
501230 CCTTCGTGTCAGATGTTTTCAAATGAATTTTTAGAAACTAAGCTTGATTTTCAGGGGTTTCTTGA
1 CCTTCGAGTCAGATGTTTTCAAATGAATTTTTAGAAACTAAGCTTGATTTTCAGGGGTTTCTTGA
* * * * *
501295 TGATTATCTCCAAATAATTTTTAAAGGAAGCTTAGCCTAATTTTTAGGGGTTACTTGACGACAAC
66 TGATTATCTCCAAAGAATTTTTAAAGAAAGCTAAGCCTAATTTTTA-GGGTTCCTTGATGACAAC
* *
501360 TGAAAACAAAAGAATTTAAGAAACTACGCTTGATTTTCAAGGGTTTCTTGATGAGTAAG-TCTTT
130 TGAAAACAAAAGATTTTAAGAAACTAAGCTTGATTTTCAA-GGTTTCTTGATGAGTAAGTTC-TT
* ** *
501424 CGGGCCATCAGTAAGTCTTTCGAGCAAGATG-TGTAAATTTTTCGGGTCATCTATAAGTCTTTCG
193 CGGGCCATCAGTAAGTCTTTCGAGCATGATGCT-TAAATCCTTCAGGTCATCTATAAGTCTTTCG
* * *
501488 AGCAAGATGATAAGTCCTTTGAGCCATCCATAAAA
257 AGCAAGATGATAAGTCCTTCGGGCCATCCATAACA
* * * * ** * *
501523 CCTTCGGGAT-GGGTGTTTTCAACAT---TTCCTTCACTCAATTCATAGCATTTCGA--ATCAGT
1 CCTTCGAG-TCAGATGTTTTCAA-ATGAATT--TTTA-GAAACT-A-AGC--TT-GATTTTCAG-
* ** * * * * ** *
501582 GACGCCTCACCATAGGGGATAACATTTCCTCTTCTCAATTCACGGCATTTCGAATCAGTAATGCC
55 G--G-GT-TTC-T---TGAT--GA-TT-ATC-TC-CAA---A--GAATTTTTAA--AG-AAAG--
** * * * * * ** * *
501647 CCACTAGAGGGGTTAACATTTCCTATGGCTCGATTCACAAC-ACTTCGAATCAGCATAAG-TCCT
96 ---CTA-A--GCCT-A-ATTT-TTAGGGTTC-CTTGATGACAAC-T-GAA--AACAAAAGAT--T
* ** * * * * * * * * *
501710 TCAAGCCA-TCAG--TAAGTCTTTCGAA-----CATGATGATTAAATCCTTTGAGTCATCTA-TA
145 TTAAGAAACTAAGCTTGA-T-TTTC-AAGGTTTCTTGATGAGTAAGTTCTTCGGGCCATC-AGTA
* * * * * * * * **
501766 AGTCTTTCGAGCAAGATG-GTAAGTCCTTTAGGCCATCCATAAGACCTTTGGGCAGCAAG-TTTT
206 AGTCTTTCGAGCATGATGCTTAAATCCTTCAGGTCATCTATAAG-TCTTT-CG-AGCAAGATGAT
** *
501829 CAA-TATTTTCGGTGCTCGATTCTCA-AA-T
268 -AAGT-CCTTCGG-GC-C-A-TC-CATAACA
* * * *
501857 CCTTCGGGTAAGATGTTTTCGAATGAATTTTTACAAACTAAGCTTGATTTTTCAGGGGTTTCTTG
1 CCTTCGAGTCAGATGTTTTCAAATGAATTTTTAGAAACTAAGCTTGA-TTTTCAGGGGTTTCTTG
*
501922 ATGATTATCTCCAAAGAATTTTTAAAGGAAGCTAAGCCTAATTTTTAGGGTTTCCTTGATGACAA
65 ATGATTATCTCCAAAGAATTTTTAAAGAAAGCTAAGCCTAATTTTTAGGG-TTCCTTGATGACAA
* ** * * * * * *
501987 ATGAAAATGAAAGATTTTAAGAAGCTAAGCTTTATTTTCATGTGTTTCTTGACGATTAAGTCCTT
129 CTGAAAACAAAAGATTTTAAGAAACTAAGCTTGATTTTCAAG-GTTTCTTGATGAGTAAGTTCTT
* * * * *
502052 CGAGCCATCAATAAGTCTTTCGAGCATCATGCTTAAATTCTTC-GGTTCAACTATAAGTCTTTCG
193 CGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCAGG-TCATCTATAAGTCTTTCG
* * *
502116 AACAAGATGATAAGTCCTT-GAGACCATCCATAAGA
257 AGCAAGATGATAAGTCCTTCG-GGCCATCCATAACA
* * * *
502151 CCTTCGAG-CAGGATGTTTTCAAATGCATTTTTAGAAACTAAGTTTGGTTTTCATGGGTTTCTTG
1 CCTTCGAGTCA-GATGTTTTCAAATGAATTTTTAGAAACTAAGCTTGATTTTCAGGGGTTTCTTG
* * * *
502215 AAGATTATCACCAAATAATTTTTAAAGGAAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGACAA
65 ATGATTATCTCCAAAGAATTTTTAAAGAAAGCTAAGCCTAATTTTTA-GGGTTCCTTGATGACAA
* * * * * *
502280 CTGAAAACGAAATATTTTAAGAAATTAAGCTTGATTTTCAAGTGTTTTTTTATGAGTAAGTGCTT
129 CTGAAAACAAAAGATTTTAAGAAACTAAGCTTGATTTTCAAG-GTTTCTTGATGAGTAAGTTCTT
* * * * * *
502345 TGGGCCATCGGTAAGTCTTACAAGCATGATGCTTAAATCCTTC-GGTTCCTCTATAATTCTTTCG
193 CGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCAGG-TCATCTATAAGTCTTTCG
* * *
502409 AACAAGATGATAAGTCCTTCAGACCATCCAT-ACGA
257 AGCAAGATGATAAGTCCTTCGGGCCATCCATAAC-A
* ** * * *
502444 CCTTC-AGGCAAGATGTTTTCAAATGCGTTTTTAGAAACAAAGCTTGGTTTTCAGGGGTTTCATG
1 CCTTCGAGTC-AGATGTTTTCAAATGAATTTTTAGAAACTAAGCTTGATTTTCAGGGGTTTCTTG
502508 ATGATTATCTCCAAAGAATTTTTAAAGAAAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGACAA
65 ATGATTATCTCCAAAGAATTTTTAAAGAAAGCTAAGCCTAATTTTTA-GGGTTCCTTGATGACAA
* * * *
502573 CTGAAAACAAAAGATTCTAAGAAACTATGCTAGATTTTCAAGGGTTTCTTGATGAATAAG-TCAT
129 CTGAAAACAAAAGATTTTAAGAAACTAAGCTTGATTTTCAA-GGTTTCTTGATGAGTAAGTTC-T
* * *
502637 TCGGGCCATCAGTAAGTCTTTCAAGCATGATGTTTAAATCCTTC-GAGTCATCTATAAGTCTTTT
192 TCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCAG-GTCATCTATAAGTCTTTC
* * * *
502701 GAGCAAGATGATAAGTACTTTGGGCCATCAATAAGA
256 GAGCAAGATGATAAGTCCTTCGGGCCATCCATAACA
*
502737 CCTTCGAGT-AGGATGTTTTCAAATGAATTTTTAGAAACTAAG-TCTAATTTTCAGGGGTTTCTT
1 CCTTCGAGTCA-GATGTTTTCAAATGAATTTTTAGAAACTAAGCT-TGATTTTCAGGGGTTTCTT
* * * *
502800 GATGATTATCTCCAAAGAATTTTTAAAGAAAGTTAAACCTAAGTTTTAGGGTTCCTTGATGAGAA
64 GATGATTATCTCCAAAGAATTTTTAAAGAAAGCTAAGCCTAATTTTTAGGGTTCCTTGATGACAA
* *
502865 CTAAAAACAAAAGATTTTAAGTAACTAAGCTTGATTTTCAAGGTATTCTTGATGAGTAAGTTCTT
129 CTGAAAACAAAAGATTTTAAGAAACTAAGCTTGATTTTCAAGGT-TTCTTGATGAGTAAGTTCTT
* * *
502930 CAGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCATCAGGTCATCTATAAGTCTTTTGA
193 CGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCAGGTCATCTATAAGTCTTTCGA
* * * * *
502995 GCAAGATAATAAGTCATTCGCGTCATCCATAACT
258 GCAAGATGATAAGTCCTTCGGGCCATCCATAACA
*
503029 CCTTCGAGTCAGATGTTTTCAAATGAATTTTTAGAAACTAAGCTTGATTTTCAAGGGTTTCTTGA
1 CCTTCGAGTCAGATGTTTTCAAATGAATTTTTAGAAACTAAGCTTGATTTTCAGGGGTTTCTTGA
* * * *
503094 TGATTATCTCTAAAGAATTTTTAAAGGAAA-CTTAGCCTAATTTTTAGGGGTTACTTGACGACAA
66 TGATTATCTCCAAAGAATTTTTAAA-GAAAGCTAAGCCTAATTTTTA-GGGTTCCTTGATGACAA
* * *
503158 CTGAAAACAAAAGAATTTAAGAAACTACGCTTGATTTTCAAGGGTTTCTTGATTAGTAAG-TCTT
129 CTGAAAACAAAAGATTTTAAGAAACTAAGCTTGATTTTCAA-GGTTTCTTGATGAGTAAGTTC-T
* * ** *
503222 TCGGGCCATCAGTAAGTCTTTCGAGCAAGATGTTTAAATTTTTCGGGTCATCTATAAGTCTTTCG
192 TCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCAGGTCATCTATAAGTCTTTCG
* * * *
503287 AGCAAAATGATAAGTCCTTTGAGCCATCCATAAAA
257 AGCAAGATGATAAGTCCTTCGGGCCATCCATAACA
* * * * ** * *
503322 CCTTCGGGAT-GGGTGTTTTCAACAT---TTCCTTCACTCAATTCATAGCATTTCGA--ATCAGT
1 CCTTCGAG-TCAGATGTTTTCAA-ATGAATT--TTTA-GAAACT-A-AGC--TT-GATTTTCAG-
* ** * * * * ** *
503381 GACGCCTCACCATAGGGGATAACATTTCCTCTTCTCAATTCACGGCATTTCGAATCAGCAATGCC
55 G--G-GT-TTC-T---TGAT--GA-TT-ATC-TC-CAA---A--GAATTTTTAA--AG-AAAG--
** * * * * * ** * ** *
503446 CCACTAGAGGGGTTAACATTTCCTATGGCTCGATTCACAAC-ACTTCGAATCAGCCTAA-ATCCT
96 ---CTA-A--GCCT-A-ATTT-TTAGGGTTC-CTTGATGACAAC-T-GAA--AACAAAAGAT-TT
* ** * * * * * * * * *
503509 T-CGAGCCATCAG--TAAGTCTTTCGAA-----CATGATGATTAAATCCTTTGAGTCATCTA-TA
146 TAAGAAAC-TAAGCTTGA-T-TTTC-AAGGTTTCTTGATGAGTAAGTTCTTCGGGCCATC-AGTA
* * * * * * * * * **
503565 AGTCTTTCGAGAAAGATG-GTAAGTCCTTTAGGCCATCCATAAGACCTTTGGGCAGCAAG-TTTT
206 AGTCTTTCGAGCATGATGCTTAAATCCTTCAGGTCATCTATAAG-TCTTT-CG-AGCAAGATGAT
** * *
503628 CAA-TATTTTCGGTGCTCGATTC-TCAACT
268 -AAGT-CCTTCGG-GC-C-ATCCAT-AACA
* * *
503656 CCTTCGGGTAAGATGTTTTCGAATGAATTTTTAGAAACTAAGCTTGATTTTTCAGGGGTTTCTTG
1 CCTTCGAGTCAGATGTTTTCAAATGAATTTTTAGAAACTAAGCTTGA-TTTTCAGGGGTTTCTTG
*
503721 ATGATTATCTCCAAAGAATTTTTAAAGGAAGCTAAGCCTAATTTTTAGGGTTTCCTTGATGACAA
65 ATGATTATCTCCAAAGAATTTTTAAAGAAAGCTAAGCCTAATTTTTAGGG-TTCCTTGATGACAA
* ** * * * * *
503786 ATGAAAATGAAAGATTTTAAGAAGCTAAGCTTTATTTTCAAGTGTTTCTTGACGATTAAGTCCTT
129 CTGAAAACAAAAGATTTTAAGAAACTAAGCTTGATTTTCAAG-GTTTCTTGATGAGTAAGTTCTT
* * * * *
503851 CGAGCCATCAATAAGTCTTTCGAGCATCATGCTTAAATCCTTCTA-TTCAACTATAAGTCTTTCG
193 CGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTC-AGGTCATCTATAAGTCTTTCG
* *
503915 AACAAGATGATAAGTCCTT-GGGACCATCCATAAGA
257 AGCAAGATGATAAGTCCTTCGGG-CCATCCATAACA
* * * *
503950 CCTTCGAG-CAGGATGTTTTCAAATGCATTTTTAGAAACTAAGTTTGGTTTTCATGGGTTTCTTG
1 CCTTCGAGTCA-GATGTTTTCAAATGAATTTTTAGAAACTAAGCTTGATTTTCAGGGGTTTCTTG
* * *
504014 ATGATTATCACCAAATAATTTTTAAAGGAAGCTAAGCCTAATTTTTAGTGGTTCCTTGATGACAA
65 ATGATTATCTCCAAAGAATTTTTAAAGAAAGCTAAGCCTAATTTTTAG-GGTTCCTTGATGACAA
* * * * *
504079 CTGAAAACGAAAGATTTTAAGAAATTAAGCTTCATTTTCAAGTGTTT-TTTATGAGTAAGTCCTT
129 CTGAAAACAAAAGATTTTAAGAAACTAAGCTTGATTTTCAAG-GTTTCTTGATGAGTAAGTTCTT
* * * * * *
504143 TGGGCCATCAGTAAGTCTTACAAGCATGATGCTTAAATCCTTC-GGTTCCTCTATAATTCTTTCA
193 CGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCAGG-TCATCTATAAGTCTTTCG
* * *
504207 AACAAGATGATAAGTCCTTCAGACCATCCAT-ACGA
257 AGCAAGATGATAAGTCCTTCGGGCCATCCATAAC-A
* * * * * * *
504242 CCATC-AGGCAAGATGTTTTCAAATGATTTTTTAGAAACTAAGCCTGGTTTTCAGTGGTTTCGTG
1 CCTTCGAGTC-AGATGTTTTCAAATGAATTTTTAGAAACTAAGCTTGATTTTCAGGGGTTTCTTG
*
504306 ATGATTATCTCCAAAGAATTTTTAAAGAAAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGATAA
65 ATGATTATCTCCAAAGAATTTTTAAAGAAAGCTAAGCCTAATTTTTA-GGGTTCCTTGATGACAA
* * * * * *
504371 CTGAAAACAAAAGATTCTAAGAAACTATGCTAGATTTTCAAGGGTTTCGTGATGAATAAGTTATT
129 CTGAAAACAAAAGATTTTAAGAAACTAAGCTTGATTTTCAA-GGTTTCTTGATGAGTAAGTTCTT
* * * * *
504436 CGAGCCATCAGTATGTCTTTCAAGCAAGATGCTTAAATCCTTCAAGTCATCTATAAGTCTTTCGA
193 CGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCAGGTCATCTATAAGTCTTTCGA
* * *
504501 GCAAGATGATAAGTACTTTGGGCCATCCATAAGA
258 GCAAGATGATAAGTCCTTCGGGCCATCCATAACA
* *
504535 CCTTCGAGT-AGGATGTTTTCAAATGAATTTTTAGAAACTAAG-TCTAATTTTTAGGGGTTTCTT
1 CCTTCGAGTCA-GATGTTTTCAAATGAATTTTTAGAAACTAAGCT-TGATTTTCAGGGGTTTCTT
* * * * *
504598 GATGATTATATCCAAAGAATTTTTAAAGGAAA-TTAAACTTAATTTTTAGGGTTCCTTGATGAGA
64 GATGATTATCTCCAAAGAATTTTTAAA-GAAAGCTAAGCCTAATTTTTAGGGTTCCTTGATGACA
504662 ACTGAAAACAAAAGATTTTAAGAAACTAAGCTTGATTTTCAAGGGTTTCTTGATGAGTAAGTTCT
128 ACTGAAAACAAAAGATTTTAAGAAACTAAGCTTGATTTTCAA-GGTTTCTTGATGAGTAAGTTCT
* * * *
504727 TCAGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCATCAGGTAATCTATAAGTCTTTTG
192 TCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCAGGTCATCTATAAGTCTTTCG
* * * *
504792 AGCAAGATAATAAGTCATTCGGGTCATCCATAACT
257 AGCAAGATGATAAGTCCTTCGGGCCATCCATAACA
* *
504827 CCTTCGGGTCAGATGTTTTCAAATGAATTTTTAGAAACTAAGCTTGATTTTCAAGGGTTTCTTGA
1 CCTTCGAGTCAGATGTTTTCAAATGAATTTTTAGAAACTAAGCTTGATTTTCAGGGGTTTCTTGA
* * * * *
504892 TGATTATCTCCAAATAATTTTTAAAGGAAGCTTAGCCTAATTTTTAGGGGTTACTTGACGACAAC
66 TGATTATCTCCAAAGAATTTTTAAAGAAAGCTAAGCCTAATTTTTA-GGGTTCCTTGATGACAAC
* *
504957 TGAAAACAAAAGAATTTAAGAAACTACGCTTGATTTTCAAGGGTTTCTTGATGAGTAAG-TCTTT
130 TGAAAACAAAAGATTTTAAGAAACTAAGCTTGATTTTCAA-GGTTTCTTGATGAGTAAGTTC-TT
* * ** *
505021 CGGGCCATCAGTAAGTCTTTCGAGCAAGATGTTTAAATTTTTCGGGTCATCTATAAGTCTTTCGA
193 CGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCAGGTCATCTATAAGTCTTTCGA
* * *
505086 GCAAGATGATAAGTCCTTTGAGCCATCCATAAAA
258 GCAAGATGATAAGTCCTTCGGGCCATCCATAACA
* * * * ** * *
505120 CCTTCGGGAT-GGGTGTTTTCAACAT---TTCCTTCACTCAATTCATAGCATT--TTGAATCAGT
1 CCTTCGAG-TCAGATGTTTTCAA-ATGAATT--TTTA-GAAACT-A-AGC-TTGATT--TTCAG-
* ** * * * * **
505179 GACGCCTCACCATAGGGGATAACATT-TCCTTTTCTCAATTCACG-GTATTTCAAA-TCAGC-AA
55 G--G-GT-TTC-T---TGAT--GATTAT-C---TC-CAA---A-GAAT-TTTTAAAGAAAGCTAA
** * ** * * * * ** * * ** * **
505240 TGCCCCA-CTAGAGGGGTTAACATTTCCTATGGC-TC-GATTCACAACA-CTTCGAATCAGCCTA
100 -GCCTAATTTTTA-GGGTT--C-CTT--GATGACAACTGA-AAACAAAAGATTTTAA-GAAACT-
* *** * * * * * * * *
505301 AATCCTTCGAGCCATCAGTAAGTCTTTCGAACATGATGATTAAATCCTTTGAGTCATCTA-TAAG
155 AA-GCTT-GA-TTTTC---AAG-GTTT----CTTGATGAGTAAGTTCTTCGGGCCATC-AGTAAG
* * * * * * * * * **
505365 TCTTTCGAGAAAGATG-GTAAGTCCCTT-AGGCCATCCATAAGACCTTTGGGCAGCAA-TTTTTC
208 TCTTTCGAGCATGATGCTTAAAT-CCTTCAGGTCATCTATAAG-TCTTT-CG-AGCAAGATGAT-
** * *
505427 AA-TATTTTCGGTGCTCGATTC-TCAACT
268 AAGT-CCTTCGG-GC-C-ATCCAT-AACA
* * *
505454 CCTTCGGGTAAGATGTTTTCGAATGAATTTTTAGAAACTAAGCTTGATTTTTCAGGGGTTTCTTG
1 CCTTCGAGTCAGATGTTTTCAAATGAATTTTTAGAAACTAAGCTTGA-TTTTCAGGGGTTTCTTG
*
505519 ATGATTATCTCCAAAGAATTTTTAAAGGAAGCTAAGCCTAATTTTTAGGGTTTCCTTGATGACAA
65 ATGATTATCTCCAAAGAATTTTTAAAGAAAGCTAAGCCTAATTTTTAGGG-TTCCTTGATGACAA
* ** * * * * *
505584 ATGAAAATGAAAGATTTTAAGAAGCTAAGCTTTATTTTCAAGTGTTTCTTGACGATTAAGTCCTT
129 CTGAAAACAAAAGATTTTAAGAAACTAAGCTTGATTTTCAAG-GTTTCTTGATGAGTAAGTTCTT
* * * * * *
505649 CGAGCCATCAATAAGTCTTTCAAGCATCATGCTTAAATCCTTC-GATTCAACTATAAGTCTTTCG
193 CGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCAG-GTCATCTATAAGTCTTTCG
* *
505713 AACAAGATGATAAGTCCTT-GGGACCATCCATAAGA
257 AGCAAGATGATAAGTCCTTCGGG-CCATCCATAACA
* * * * *
505748 CCTTCGAG-CAGGATGTTTTCAATTGCATTTTTAGAAACTAAGTTTGGTTTTCATGGGTTTCTTG
1 CCTTCGAGTCA-GATGTTTTCAAATGAATTTTTAGAAACTAAGCTTGATTTTCAGGGGTTTCTTG
* * * * *
505812 ATGATTATCACAAAATAATTTTTAAAGGAAGCTAAGCCTAATTTTTAGTGGTTCCTTGATGATAA
65 ATGATTATCTCCAAAGAATTTTTAAAGAAAGCTAAGCCTAATTTTTAG-GGTTCCTTGATGACAA
** * * * *
505877 CTGAAAAGGAAATATTTTAAGAAATTAAGCTTGATTTTCAAGTGTTT-TTTATGAGTAAGTCCTT
129 CTGAAAACAAAAGATTTTAAGAAACTAAGCTTGATTTTCAAG-GTTTCTTGATGAGTAAGTTCTT
* * * * *
505941 TGGGCCATCAGTAAGTCTTACAAGCATGATGCTTAAATCCTTC-GGTTCCTCTATAATTCTTTCG
193 CGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCAGG-TCATCTATAAGTCTTTCG
* ** *
506005 AACAAGATGATAAGTCCTTTAGACCATCCAT-ACGA
257 AGCAAGATGATAAGTCCTTCGGGCCATCCATAAC-A
** * * * * *
506040 CCTTC-AGGAAAGATGTTTTCAAATGAGTTTTTAGAAACTAAGCCTGGTTTTCAGTGGTTTCGTG
1 CCTTCGA-GTCAGATGTTTTCAAATGAATTTTTAGAAACTAAGCTTGATTTTCAGGGGTTTCTTG
506104 ATGATTATCTCCAAAGAATTTTTAAAGAAAGCTAAGCCTAATTTTTAGGGGTTCCTTGATGACAA
65 ATGATTATCTCCAAAGAATTTTTAAAGAAAGCTAAGCCTAATTTTTA-GGGTTCCTTGATGACAA
* * * *
506169 CTGAAAACAAAAGATTCTAAGAAACTATGCTAGATTTTCAAGGGTTTCTTGATGAATAAG-TCAT
129 CTGAAAACAAAAGATTTTAAGAAACTAAGCTTGATTTTCAA-GGTTTCTTGATGAGTAAGTTC-T
*
506233 TCGGGCCATCAGTAAGTCTTTCAAGCATGATGCTTAAATCCTTC-GAGTCATCTATAAGTCTTTC
192 TCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCAG-GTCATCTATAAGTCTTTC
* * *
506297 GAGCAAGATGATAAGTACTTTGGGCCATCCATAAGA
256 GAGCAAGATGATAAGTCCTTCGGGCCATCCATAACA
* *
506333 CCTTCAAGT-ACGATGTTTTCAAATGAATTTTTAGAAACTAAG-TCTAATTTTCAGGGGTTTCTT
1 CCTTCGAGTCA-GATGTTTTCAAATGAATTTTTAGAAACTAAGCT-TGATTTTCAGGGGTTTCTT
* * *
506396 GATGATTATCTCCAAAGAATTTTTAAAGGAAA-TTAAACCTAATTTTTAGGGTTCCTTGATGAGA
64 GATGATTATCTCCAAAGAATTTTTAAA-GAAAGCTAAGCCTAATTTTTAGGGTTCCTTGATGACA
506460 ACTGAAAACAAAAGATTTTAAGAAACTAAGCTTGATTTTCAAGGGTTTCTTGATGAGTAAGTTCT
128 ACTGAAAACAAAAGATTTTAAGAAACTAAGCTTGATTTTCAA-GGTTTCTTGATGAGTAAGTTCT
* * * *
506525 TCAGGCCATCAGAAAGTCTTTCGAGCATGATGCTTAAATCCATCAGGTCATCTATAAGTCTTTTG
192 TCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCAGGTCATCTATAAGTCTTTCG
* * * *
506590 AGCAAGATAATAAGTCATTCGGGTCATCCATAACT
257 AGCAAGATGATAAGTCCTTCGGGCCATCCATAACA
* *
506625 CCTTCGGGTCAGATGTTTTCAAATGAATTTTTAGAAACTAATCTTGATTTTCAGGGGTTTCTTGA
1 CCTTCGAGTCAGATGTTTTCAAATGAATTTTTAGAAACTAAGCTTGATTTTCAGGGGTTTCTTGA
* * * * *
506690 TGATTATCTCCAAAGAATTTTTAAAAAAAAAACTTAGCCTAATTCTTAGGGGTTCCTTGACGACA
66 TGATTATCTCCAAAGAATTTTT--AAAGAAAGCTAAGCCTAATTTTTA-GGGTTCCTTGATGACA
* *
506755 ACTGAAAACAAAAGAATTTAAGAAACTACGCTTGATTTTCAAGGGTTTCTTGATGAGTAAG-TCT
128 ACTGAAAACAAAAGATTTTAAGAAACTAAGCTTGATTTTCAA-GGTTTCTTGATGAGTAAGTTC-
* * ** *
506819 TTCGGGCCATCATTAAGTCTTTCGAGCAAGATG-TGTAAATTTTTCGGGTCATCTATAAGTCTTT
191 TTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCT-TAAATCCTTCAGGTCATCTATAAGTCTTT
* * *
506883 CGAGCAAGATGATAAGTCCTTTGAGCCATCCATAAAA
255 CGAGCAAGATGATAAGTCCTTCGGGCCATCCATAACA
* * * * ** *
506920 CCTTCGGGAT-GGGTGTTTTCAACAT---TTCCTTCACTCAATTCATAGCATTTCGAATCAGTGA
1 CCTTCGAG-TCAGATGTTTTCAA-ATGAATT--TTTA-GAAACT-A-AGC--TT-G-AT---T--
** ** * * ** **
506981 TGCCTCACCATAGGGGATAACATT--TCCTTTTCT-CAATTCACGTCA-TTTCGAA-TCAGC-AA
50 T---T---C--AGGGG-TTTC-TTGATGATTATCTCCAA---A-G-AATTTTTAAAGAAAGCTAA
** * ** * * * * ** * * ** ** *
507040 TGCCCCA-CTAGAGGGGTTAACATTTCCTATGGC-TC-GATTCACAACA-CTTCGAATCAGCTTA
100 -GCCTAATTTTTA-GGGTT--C-CTT--GATGACAACTGA-AAACAAAAGATTTTAAGAAAC-TA
*** * * * * * * * *
507101 AGTCCTTCGAGCCATCAGTAAGTCTTTCGAACATGATGATTAAATCCTTTGAGTCATCTA-TAAG
156 AG--CTT-GA-TTTTC---AAG-GTTT----CTTGATGAGTAAGTTCTTCGGGCCATC-AGTAAG
* * * * * * * * * **
507165 TCTTTCGAGAAAGATG-GTAAGTCCTTTAGGCCATCCATAAGACCTTTGGGCAGCAAG-TTTTCA
208 TCTTTCGAGCATGATGCTTAAATCCTTCAGGTCATCTATAAG-TCTTT-CG-AGCAAGATGAT-A
** * *
507228 A-TATTTCGGTGCTCGATTC-TCAACT
269 AGTCCTTCGG-GC-C-ATCCAT-AACA
* * *
507253 CCTTCGGGTAAGATGTTTTCGAATGAATTTTTAGAAACTAAGCTTGATTTTTCAGGGGTTTCTTG
1 CCTTCGAGTCAGATGTTTTCAAATGAATTTTTAGAAACTAAGCTTGA-TTTTCAGGGGTTTCTTG
*
507318 ATGATTATCTCCAAAGAATTTTTAAAGGAAA-CTAAGCCTAATTTTTAGGGTTTCCTTGATGAAA
65 ATGATTATCTCCAAAGAATTTTTAAA-GAAAGCTAAGCCTAATTTTTAGGG-TTCCTTGATGACA
* ** * * * * * *
507382 AATGAAAATGAAAGATTTTAAGAATCTAAGCTTTATTTTTAAGTGTTTCTTGACGATTAAGTCCT
128 ACTGAAAACAAAAGATTTTAAGAAACTAAGCTTGATTTTCAAG-GTTTCTTGATGAGTAAGTTCT
** * * *
507447 TCGATCCATCAATAAGTCTTTCGAGCATCATGCTTAAATCCTTC-GGTTCAACTATAAGTCTTTC
192 TCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCAGG-TCATCTATAAGTCTTTC
* * *
507511 GAACAAGATGATAAGT-CTTTGGGACCATCCATAAGA
256 GAGCAAGATGATAAGTCCTTCGGG-CCATCCATAACA
* * * * *
507547 CCTTCGAG-CAGGATGTTTTCAAATGCATTTTTAGAAACTAAGTTTGGTTTCCATGGGTTTCTTG
1 CCTTCGAGTCA-GATGTTTTCAAATGAATTTTTAGAAACTAAGCTTGATTTTCAGGGGTTTCTTG
* * *
507611 ATGATTATCACCAAATAATTTTTAAAGGAAGCTAAGCCTAATTTTTAGTGGTTCCTTGATGACAA
65 ATGATTATCTCCAAAGAATTTTTAAAGAAAGCTAAGCCTAATTTTTAG-GGTTCCTTGATGACAA
* * * * * *
507676 CTGAAAACGAAAGATTTTAAGGAATTAAGCTTGATTTTCAAGTGTTTTTTTATGAGTAAGTCCTT
129 CTGAAAACAAAAGATTTTAAGAAACTAAGCTTGATTTTCAAG-GTTTCTTGATGAGTAAGTTCTT
* * * * *
507741 TGGGCCATCAGTAAGTCTTACAAGCATGATGCTTAAATCCTTC-GGTTCCTCTATAATTCTTTCG
193 CGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCAGG-TCATCTATAAGTCTTTCG
* * * *
507805 AACAAGGTGATAAGTCCTTCAGACCATCCAT-ACGA
257 AGCAAGATGATAAGTCCTTCGGGCCATCCATAAC-A
* * * * * * *
507840 TCTTC-AGGCAAGATGTTTTCAAATGAGTTTTTAGAAACTAAGCCTGGTTTTCAGTGGTTTCGTG
1 CCTTCGAGTC-AGATGTTTTCAAATGAATTTTTAGAAACTAAGCTTGATTTTCAGGGGTTTCTTG
* * *
507904 ATTATTTTCTCCAAAGAATTTTTAAAGAAAGCTAAGCCTAATTTTTAGGTGTTCGTTGATGACAA
65 ATGATTATCTCCAAAGAATTTTTAAAGAAAGCTAAGCCTAATTTTTAGG-GTTCCTTGATGACAA
* * * * *
507969 CTGAAAACAGAAGATTCTAAGAAACTATGCTAGATTTTCAAGGGTTTCTTGATGAATAAG-TCAT
129 CTGAAAACAAAAGATTTTAAGAAACTAAGCTTGATTTTCAA-GGTTTCTTGATGAGTAAGTTC-T
* *
508033 TCGGGCCATCAGTAAGTCTTTCAAGCATGATGCATAAATCCTTC-GAGTCATCTATAAGTCTTTC
192 TCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCAG-GTCATCTATAAGTCTTTC
* * * *
508097 GAGCAAGATGATAAGTACTTTGGGCCATCTATAAGA
256 GAGCAAGATGATAAGTCCTTCGGGCCATCCATAACA
* *
508133 CCTTTGAGT-AGGATGTTTTCAAATGAATTTTTAGAAACTAAG-TCTAATTTTCAGGGGTTTCTT
1 CCTTCGAGTCA-GATGTTTTCAAATGAATTTTTAGAAACTAAGCT-TGATTTTCAGGGGTTTCTT
* * * *
508196 GATAATTATCTCCAAAGAATTTTTAAAGGAAA-TTAAACCTAATTTTTAGGGTTCCTTGATGAGA
64 GATGATTATCTCCAAAGAATTTTTAAA-GAAAGCTAAGCCTAATTTTTAGGGTTCCTTGATGACA
* *
508260 ACTAAAAACAAAAGATTTTAAGTAACTAAG-TTGGATTTTCAAGGGTTTCTTGATGAGTAAGTTC
128 ACTGAAAACAAAAGATTTTAAGAAACTAAGCTT-GATTTTCAA-GGTTTCTTGATGAGTAAGTTC
* * * *
508324 TTCAGGCCATCAGTAAGTCTTTCGAGCATGATTCTTAAATCCATT-AGGTGATTTATAAGTCTTT
191 TTCGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCC-TTCAGGTCATCTATAAGTCTTT
* * * * *
508388 TGAGCAAGATAATAAGTCATTCGGGTCATCCATAACT
255 CGAGCAAGATGATAAGTCCTTCGGGCCATCCATAACA
* *
508425 CCTTCGGGTCAAATGTTTTCAAATGAATTTTTAGAAACTAAGCTTGATTTTCAGGGGTTTCTTGA
1 CCTTCGAGTCAGATGTTTTCAAATGAATTTTTAGAAACTAAGCTTGATTTTCAGGGGTTTCTTGA
* * *
508490 TGATTATCTCCAAAGAATTTTTAAAGGAAGCTTAGCCTAATTTTTAAGGGTTCCTTGACGACAAC
66 TGATTATCTCCAAAGAATTTTTAAAGAAAGCTAAGCCTAATTTTT-AGGGTTCCTTGATGACAAC
* * *
508555 TGAAAACAAAAGAATTTAAGAAACTACGCTAGATTTTCAAGGGTTTCTTGATGAGTAAG-TCTTT
130 TGAAAACAAAAGATTTTAAGAAACTAAGCTTGATTTTCAA-GGTTTCTTGATGAGTAAGTTC-TT
* * * ** **
508619 CGGGCCATCAGTATGTCTTTCGAGCAAGATGTTTAAATTTTTTGGGTCATCTATAAGTCTTTCGA
193 CGGGCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCAGGTCATCTATAAGTCTTTCGA
* * * *
508684 GCAAGATGATAAGCCCTTTGAGCCATCCATAAAA
258 GCAAGATGATAAGTCCTTCGGGCCATCCATAACA
508718 CCTTCG
1 CCTTCG
508724 GGATGGGTGT
Statistics
Matches: 6688, Mismatches: 1209, Indels: 953
0.76 0.14 0.11
Matches are distributed among these distances:
291 21 0.00
292 1554 0.23
293 3101 0.46
294 387 0.06
295 200 0.03
296 45 0.01
297 65 0.01
298 82 0.01
299 158 0.02
300 52 0.01
301 5 0.00
302 14 0.00
303 16 0.00
305 2 0.00
306 12 0.00
307 6 0.00
308 16 0.00
309 21 0.00
310 22 0.00
311 35 0.01
312 27 0.00
313 24 0.00
314 37 0.01
315 31 0.00
316 21 0.00
317 38 0.01
318 27 0.00
319 18 0.00
320 14 0.00
321 5 0.00
322 14 0.00
324 3 0.00
325 17 0.00
326 6 0.00
327 5 0.00
328 79 0.01
329 172 0.03
330 53 0.01
331 81 0.01
332 27 0.00
333 56 0.01
334 95 0.01
335 16 0.00
336 8 0.00
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.35
Consensus pattern (291 bp):
CCTTCGAGTCAGATGTTTTCAAATGAATTTTTAGAAACTAAGCTTGATTTTCAGGGGTTTCTTGA
TGATTATCTCCAAAGAATTTTTAAAGAAAGCTAAGCCTAATTTTTAGGGTTCCTTGATGACAACT
GAAAACAAAAGATTTTAAGAAACTAAGCTTGATTTTCAAGGTTTCTTGATGAGTAAGTTCTTCGG
GCCATCAGTAAGTCTTTCGAGCATGATGCTTAAATCCTTCAGGTCATCTATAAGTCTTTCGAGCA
AGATGATAAGTCCTTCGGGCCATCCATAACA
Found at i:503457 original size:59 final size:59
Alignment explanation
Indices: 503342--503499 Score: 156
Period size: 59 Copynumber: 2.7 Consensus size: 59
503332 GGGTGTTTTC
* ** * *
503342 AACATTTCCTTCACTCAATTCATAGCATTTCGAATCAGTGACGCCTCACCATAGGGGAT
1 AACATTTCCTTCACTCAATTCACAGCATTTCGAATCAGCAACGCCCCACCAGAGGGGAT
* * * * *
503401 AACATTTCC-TCTTCTCAATTCACGGCATTTCGAATCAGCAATGCCCCACTAGAGGGGTT
1 AACATTTCCTTC-ACTCAATTCACAGCATTTCGAATCAGCAACGCCCCACCAGAGGGGAT
** * * *
503460 AACATTTCCTATGGCTCGATTCACAACACTTCGAATCAGC
1 AACATTTCCT-TCACTCAATTCACAGCATTTCGAATCAGC
503500 CTAAATCCTT
Statistics
Matches: 80, Mismatches: 16, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
58 2 0.03
59 55 0.69
60 22 0.28
61 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.28
Consensus pattern (59 bp):
AACATTTCCTTCACTCAATTCACAGCATTTCGAATCAGCAACGCCCCACCAGAGGGGAT
Found at i:503867 original size:20 final size:19
Alignment explanation
Indices: 503842--503879 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
503832 TCTTGACGAT
503842 TAAGTCCTTCGAGCCATCAA
1 TAAGTCCTTCGAG-CATCAA
*
503862 TAAGTCTTTCGAGCATCA
1 TAAGTCCTTCGAGCATCA
503880 TGCTTAAATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (19 bp):
TAAGTCCTTCGAGCATCAA
Found at i:504895 original size:585 final size:584
Alignment explanation
Indices: 503910--505125 Score: 1701
Period size: 585 Copynumber: 2.1 Consensus size: 584
503900 ACTATAAGTC
* *
503910 TTTCGAACAAGATGATAAGTCCTTGGGACCATCCATAAGACCTTCGAGCAGGATGTTTTCAAATG
1 TTTCGAGCAAGATGATAAGTCTTTGGG-CCATCCATAAGACCTTCGAGCAGGATGTTTTCAAATG
* * ** * *
503975 CATTTTTAGAAACTAAGTTTGGTTTTCATGGGTTTCTTGATGATTATCACCAAATAATTTTTAAA
65 AATTTTTAGAAACTAAGTCTAATTTTCAGGGGTTTCTTGATGATTATCACCAAAGAATTTTTAAA
* * * *
504040 GGAAGCTAAGCCTAATTTTTAGTGGTTCCTTGATGACAACTGAAAACGAAAGATTTTAAGAAATT
130 GGAAACTAAACCTAATTTTTAGTGGTTCCTTGATGACAACTGAAAACAAAAGATTTTAAGAAACT
* * **
504105 AAGCTTCATTTTCAAGTGTTTTTTATGAGTAAGTCCTTTGGGCCATCAGTAAGTCTTACAAGCAT
195 AAGCTTCATTTTCAAGGGTTTTTGATGAGTAAGTCCTTCAGGCCATCAGTAAGTCTTACAAGCAT
* ** * * *
504170 GATGCTTAAATCCTTCGGTTCCTCTATAATTCTTTCAAACAAGATGATAAGTCCTTCAGACCATC
260 GATGCTTAAATCCATCGGTTAATCTATAAGTCTTTCAAACAAGATAATAAGTCATTCAGACCATC
* *
504235 CATACGACCATCAGGCAAGATGTTTTCAAATGATTTTTTAGAAACTAAGCCTGGTTTTCAGTGGT
325 CATACGACCATCAGGCAAGATGTTTTCAAATGAATTTTTAGAAACTAAGCCTGATTTTCAGTGGT
*
504300 TTCGTGATGATTATCTCCAAAGAATTTTTAAAGAAAGCTAAGCCTAATTTTTAGGGGTTCCTTGA
390 TTCGTGATGATTATCTCCAAAGAATTTTTAAAGAAAGCTAAGCCTAATTTTTAGGGGTTACTTGA
* * *
504365 TGATAACTGAAAACAAAAG-ATTCTAAGAAACTATGCTAGATTTTCAAGGGTTTCGTGATGAATA
455 CGACAACTGAAAACAAAAGAATT-TAAGAAACTACGCTAGATTTTCAAGGGTTTCGTGATGAATA
*
504429 AGT-TATTCGAGCCATCAGTATGTCTTTCAAGCAAGATGCTTAAATCCTTCAAGTCATCTATAAG
519 AGTCT-TTCGAGCCATCAGTAAGTCTTTCAAGCAAGATGCTTAAATCCTTCAAGTCATCTATAAG
504493 TC
583 TC
*
504495 TTTCGAGCAAGATGATAAGTACTTTGGGCCATCCATAAGACCTTCGAGTAGGATGTTTTCAAATG
1 TTTCGAGCAAGATGATAAGT-CTTTGGGCCATCCATAAGACCTTCGAGCAGGATGTTTTCAAATG
*
504560 AATTTTTAGAAACTAAGTCTAATTTTTAGGGGTTTCTTGATGATTAT-ATCCAAAGAATTTTTAA
65 AATTTTTAGAAACTAAGTCTAATTTTCAGGGGTTTCTTGATGATTATCA-CCAAAGAATTTTTAA
* * *
504624 AGGAAATTAAACTTAATTTTTAG-GGTTCCTTGATGAGAACTGAAAACAAAAGATTTTAAGAAAC
129 AGGAAACTAAACCTAATTTTTAGTGGTTCCTTGATGACAACTGAAAACAAAAGATTTTAAGAAAC
* * * *
504688 TAAGCTTGATTTTCAAGGGTTTCTTGATGAGTAAGTTCTTCAGGCCATCAGTAAGTCTTTCGAGC
194 TAAGCTTCATTTTCAAGGGTTT-TTGATGAGTAAGTCCTTCAGGCCATCAGTAAGTCTTACAAGC
** * * **
504753 ATGATGCTTAAATCCATCAGG-TAATCTATAAGTCTTTTGAGCAAGATAATAAGTCATTCGGGTC
258 ATGATGCTTAAATCCATC-GGTTAATCTATAAGTCTTTCAAACAAGATAATAAGTCATTCAGACC
* * * *
504817 ATCCATAAC-TCCTTCGGGTC-AGATGTTTTCAAATGAATTTTTAGAAACTAAGCTTGATTTTCA
322 ATCCAT-ACGACCATCAGG-CAAGATGTTTTCAAATGAATTTTTAGAAACTAAGCCTGATTTTC-
* * * *
504880 AG-GGTTTCTTGATGATTATCTCCAAATAATTTTTAAAGGAAGCTTAGCCTAATTTTTAGGGGTT
384 AGTGGTTTCGTGATGATTATCTCCAAAGAATTTTTAAAGAAAGCTAAGCCTAATTTTTAGGGGTT
* *
504944 ACTTGACGACAACTGAAAACAAAAGAATTTAAGAAACTACGCTTGATTTTCAAGGGTTTCTTGAT
449 ACTTGACGACAACTGAAAACAAAAGAATTTAAGAAACTACGCTAGATTTTCAAGGGTTTCGTGAT
* * * * ** **
505009 GAGTAAGTCTTTCGGGCCATCAGTAAGTCTTTCGAGCAAGATGTTTAAATTTTTCGGGTCATCTA
514 GAATAAGTCTTTCGAGCCATCAGTAAGTCTTTCAAGCAAGATGCTTAAATCCTTCAAGTCATCTA
505074 TAAGTC
579 TAAGTC
* *
505080 TTTCGAGCAAGATGATAAGTCCTTTGAGCCATCCATAAAACCTTCG
1 TTTCGAGCAAGATGATAAGT-CTTTGGGCCATCCATAAGACCTTCG
505126 GGATGGGTGT
Statistics
Matches: 557, Mismatches: 65, Indels: 18
0.87 0.10 0.03
Matches are distributed among these distances:
584 59 0.11
585 481 0.86
586 17 0.03
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.35
Consensus pattern (584 bp):
TTTCGAGCAAGATGATAAGTCTTTGGGCCATCCATAAGACCTTCGAGCAGGATGTTTTCAAATGA
ATTTTTAGAAACTAAGTCTAATTTTCAGGGGTTTCTTGATGATTATCACCAAAGAATTTTTAAAG
GAAACTAAACCTAATTTTTAGTGGTTCCTTGATGACAACTGAAAACAAAAGATTTTAAGAAACTA
AGCTTCATTTTCAAGGGTTTTTGATGAGTAAGTCCTTCAGGCCATCAGTAAGTCTTACAAGCATG
ATGCTTAAATCCATCGGTTAATCTATAAGTCTTTCAAACAAGATAATAAGTCATTCAGACCATCC
ATACGACCATCAGGCAAGATGTTTTCAAATGAATTTTTAGAAACTAAGCCTGATTTTCAGTGGTT
TCGTGATGATTATCTCCAAAGAATTTTTAAAGAAAGCTAAGCCTAATTTTTAGGGGTTACTTGAC
GACAACTGAAAACAAAAGAATTTAAGAAACTACGCTAGATTTTCAAGGGTTTCGTGATGAATAAG
TCTTTCGAGCCATCAGTAAGTCTTTCAAGCAAGATGCTTAAATCCTTCAAGTCATCTATAAGTC
Found at i:507032 original size:59 final size:59
Alignment explanation
Indices: 506940--507067 Score: 159
Period size: 59 Copynumber: 2.2 Consensus size: 59
506930 GGGTGTTTTC
** * *
506940 AACATTTCCTTCACTCAATTCATAGCATTTCGAATCAGTGATGCCTCACCATAGGGGAT
1 AACATTTCCTTCACTCAATTCATAGCATTTCGAATCAGCAATGCCCCACCAGAGGGGAT
** * * *
506999 AACATTTCCTTTTCTCAATTCA-CGTCATTTCGAATCAGCAATGCCCCACTAGAGGGGTT
1 AACATTTCCTTCACTCAATTCATAG-CATTTCGAATCAGCAATGCCCCACCAGAGGGGAT
507058 AACATTTCCT
1 AACATTTCCT
507068 ATGGCTCGAT
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
58 1 0.02
59 58 0.98
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.32
Consensus pattern (59 bp):
AACATTTCCTTCACTCAATTCATAGCATTTCGAATCAGCAATGCCCCACCAGAGGGGAT
Found at i:508131 original size:41 final size:42
Alignment explanation
Indices: 508032--508131 Score: 114
Period size: 42 Copynumber: 2.4 Consensus size: 42
508022 GAATAAGTCA
* *
508032 TTCGGGCCATC-AGTAAGTCTTTCAAGCATGATGCATAAATCC
1 TTCGGGCCATCTA-TAAGTCTTTCAAGCAAGATGCATAAATAC
* * * *
508074 TTCGAGTCATCTATAAGTCTTTCGAGCAAGATG-ATAAGTAC
1 TTCGGGCCATCTATAAGTCTTTCAAGCAAGATGCATAAATAC
*
508115 TTTGGGCCATCTATAAG
1 TTCGGGCCATCTATAAG
508132 ACCTTTGAGT
Statistics
Matches: 48, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
41 20 0.42
42 27 0.56
43 1 0.02
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (42 bp):
TTCGGGCCATCTATAAGTCTTTCAAGCAAGATGCATAAATAC
Found at i:508830 original size:59 final size:59
Alignment explanation
Indices: 508738--508865 Score: 166
Period size: 59 Copynumber: 2.2 Consensus size: 59
508728 GGGTGTTTTC
* * * *
508738 AACATTTCCTTCACTCAATTCATAGCATTTCGAATCAGTGACGCCTCACCATAGGGGAT
1 AACATTTCCTTCACTCAATTCACAGCATTTCGAATCAGTAACGCCCCACCAGAGGGGAT
** * * * *
508797 AACATTTCCTTTTCTCAATTCACGGCATTTCGAATCAGTAATGCCCCACTAGAGGGGTT
1 AACATTTCCTTCACTCAATTCACAGCATTTCGAATCAGTAACGCCCCACCAGAGGGGAT
508856 AACATTTCCT
1 AACATTTCCT
508866 ATGGCTTGAT
Statistics
Matches: 59, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
59 59 1.00
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.31
Consensus pattern (59 bp):
AACATTTCCTTCACTCAATTCACAGCATTTCGAATCAGTAACGCCCCACCAGAGGGGAT
Found at i:509263 original size:20 final size:19
Alignment explanation
Indices: 509238--509275 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
509228 TCTTGACGAT
509238 TAAGTCCTTCGAGCCATCAA
1 TAAGTCCTTCGAG-CATCAA
*
509258 TAAGTCTTTCGAGCATCA
1 TAAGTCCTTCGAGCATCA
509276 TGCTTAAATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (19 bp):
TAAGTCCTTCGAGCATCAA
Found at i:509757 original size:61 final size:61
Alignment explanation
Indices: 509689--509808 Score: 213
Period size: 61 Copynumber: 2.0 Consensus size: 61
509679 ATCCGTTTAG
509689 CCAAAAATTCAACCCAAAAGCCTAGATCTAGGATTTTACCTACGTACAACTCGGATTCTAC
1 CCAAAAATTCAACCCAAAAGCCTAGATCTAGGATTTTACCTACGTACAACTCGGATTCTAC
* * *
509750 CCAAAAATTCAACCTAAAAGCCTAGATCTAGGATTTTACCTTCGTACAACTTGGATTCT
1 CCAAAAATTCAACCCAAAAGCCTAGATCTAGGATTTTACCTACGTACAACTCGGATTCT
509809 TTCATTGTTT
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
61 56 1.00
ACGTcount: A:0.35, C:0.26, G:0.12, T:0.28
Consensus pattern (61 bp):
CCAAAAATTCAACCCAAAAGCCTAGATCTAGGATTTTACCTACGTACAACTCGGATTCTAC
Found at i:513577 original size:49 final size:49
Alignment explanation
Indices: 513234--513576 Score: 492
Period size: 49 Copynumber: 7.0 Consensus size: 49
513224 GAATAACATG
* * *
513234 AGTGGCATCTTTTATGTCGAAATGCATCGTTAGGCATTTAACTTTCATT
1 AGTGGCACCTTTTATGTCGAAATGCACCGTTATGCATTTAACTTTCATT
* * *
513283 AGTGACACCTTTTATGTCGAAATACATCGTTATGCATTTAACTTTCATT
1 AGTGGCACCTTTTATGTCGAAATGCACCGTTATGCATTTAACTTTCATT
* * *
513332 TGTGGCACC-CTTATTGTCTAAATGCACCGTTATGCATTTAACTTTCATT
1 AGTGGCACCTTTTA-TGTCGAAATGCACCGTTATGCATTTAACTTTCATT
* * *
513381 AGTGGCACCTTTTATGCCGAAATTCACCATTATGCATTTAACTTTCATT
1 AGTGGCACCTTTTATGTCGAAATGCACCGTTATGCATTTAACTTTCATT
* *
513430 AGGGGCACCTTTTATG-CTGAAATGCACTGTTATGCATTTAACTTTCATT
1 AGTGGCACCTTTTATGTC-GAAATGCACCGTTATGCATTTAACTTTCATT
*
513479 AGTGGCACCTTTTATGTCGAAATGCACTGTTATGCATTTAACTTTCATT
1 AGTGGCACCTTTTATGTCGAAATGCACCGTTATGCATTTAACTTTCATT
* * *
513528 TGTGGCACCTTTTATGCCGAAATGTACCGTTATGCATTTAACTTTCATT
1 AGTGGCACCTTTTATGTCGAAATGCACCGTTATGCATTTAACTTTCATT
513577 TTAGAGCATT
Statistics
Matches: 265, Mismatches: 25, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
48 4 0.02
49 257 0.97
50 4 0.02
ACGTcount: A:0.25, C:0.20, G:0.15, T:0.40
Consensus pattern (49 bp):
AGTGGCACCTTTTATGTCGAAATGCACCGTTATGCATTTAACTTTCATT
Done.