Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01008449.1 Hibiscus syriacus cultivar Beakdansim tig00111254_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1344907
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 4 of 6
Found at i:756214 original size:30 final size:31
Alignment explanation
Indices: 756161--756219 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
756151 GATTTTTAGA
* *
756161 TAAAATATTAATTTAA-TTTTTAAATTTAAC
1 TAAAATATTAATTTAACTCTTAAAATTTAAC
*
756191 TAAAATATTAATTTTACTCTTAAAATTTA
1 TAAAATATTAATTTAACTCTTAAAATTTA
756220 GATGAAAAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 15 0.60
31 10 0.40
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (31 bp):
TAAAATATTAATTTAACTCTTAAAATTTAAC
Found at i:758639 original size:20 final size:18
Alignment explanation
Indices: 758600--758662 Score: 67
Period size: 18 Copynumber: 3.4 Consensus size: 18
758590 CGATTGTCGA
758600 TATTTTTTATTATCTTTT
1 TATTTTTTATTATCTTTT
758618 TATTTTTTA-TATCGTATCTT
1 TATTTTTTATTATC-T-T-TT
*
758638 TATTTTTATTTTAT-TTTT
1 TATTTTT-TATTATCTTTT
758656 TATTTTT
1 TATTTTT
758663 AATAAGTTTG
Statistics
Matches: 39, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
17 4 0.10
18 19 0.49
19 2 0.05
20 10 0.26
21 1 0.03
22 3 0.08
ACGTcount: A:0.17, C:0.05, G:0.02, T:0.76
Consensus pattern (18 bp):
TATTTTTTATTATCTTTT
Found at i:759191 original size:21 final size:22
Alignment explanation
Indices: 759167--759208 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
759157 AAAATAATTA
759167 AAATATAATAT-AAATATTAAC
1 AAATATAATATCAAATATTAAC
*
759188 AAATATAATATCAAATCTTAA
1 AAATATAATATCAAATATTAA
759209 TATAAAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (22 bp):
AAATATAATATCAAATATTAAC
Found at i:759613 original size:30 final size:30
Alignment explanation
Indices: 759577--759640 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
759567 TAACCGGTAT
** * *
759577 AACCGTTATATTTAGTATGTTAGTTAATTG
1 AACCGTTATATTTAACATGTTAATTAATCG
759607 AACCGTTATATTTAACATGTTAATTAATCG
1 AACCGTTATATTTAACATGTTAATTAATCG
759637 AACC
1 AACC
759641 ATTAATACTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.12, T:0.41
Consensus pattern (30 bp):
AACCGTTATATTTAACATGTTAATTAATCG
Found at i:760146 original size:51 final size:52
Alignment explanation
Indices: 760027--760150 Score: 146
Period size: 50 Copynumber: 2.4 Consensus size: 52
760017 ATACCGGTGC
* * *
760027 AAGTATGTGTTAAGTGTTACACTTTTTTTTAATTTATTCACTTACACCAGTGT
1 AAGTATGTGTTAAGTGCTACAC-TTTGTTTAATTTATTCACTTACACCAGTAT
* * **
760080 -AGTATATGTTAAGTGCTACAC-TTGTTTATTTTATTCACTTACA-TTGATAT
1 AAGTATGTGTTAAGTGCTACACTTTGTTTAATTTATTCACTTACACCAG-TAT
760130 AAGTATGTGTTAAGTGCTACA
1 AAGTATGTGTTAAGTGCTACA
760151 TTTTTTGTAG
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
49 1 0.02
50 22 0.36
51 19 0.31
52 19 0.31
ACGTcount: A:0.28, C:0.12, G:0.15, T:0.45
Consensus pattern (52 bp):
AAGTATGTGTTAAGTGCTACACTTTGTTTAATTTATTCACTTACACCAGTAT
Found at i:762004 original size:26 final size:24
Alignment explanation
Indices: 761969--762017 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
761959 TTGTTGATAA
*
761969 TATTTTAATATATAAAATATAAATTT
1 TATTTAAATA-AT-AAATATAAATTT
*
761995 TATTTAAATAATTAATATAAATT
1 TATTTAAATAATAAATATAAATT
762018 ATATATATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 10 0.48
25 2 0.10
26 9 0.43
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (24 bp):
TATTTAAATAATAAATATAAATTT
Found at i:762010 original size:33 final size:34
Alignment explanation
Indices: 761973--762038 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 34
761963 TGATAATATT
761973 TTAATATATAA-AATATAAATTTT-ATTTAAATAA
1 TTAATATA-AATAATATAAATTTTAATTTAAATAA
* *
762006 TTAATATAAATTATATATATTTTAATTTAAATA
1 TTAATATAAATAATATAAATTTTAATTTAAATA
762039 TTTTAATTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
32 2 0.07
33 18 0.62
34 9 0.31
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (34 bp):
TTAATATAAATAATATAAATTTTAATTTAAATAA
Found at i:763079 original size:15 final size:15
Alignment explanation
Indices: 763059--763090 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
763049 TAAATCCTCT
763059 CAAATCCTCTCAAAC
1 CAAATCCTCTCAAAC
763074 CAAATCCTCTCAAAC
1 CAAATCCTCTCAAAC
763089 CA
1 CA
763091 TATTAAAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.41, C:0.41, G:0.00, T:0.19
Consensus pattern (15 bp):
CAAATCCTCTCAAAC
Found at i:763196 original size:24 final size:23
Alignment explanation
Indices: 763151--763199 Score: 62
Period size: 24 Copynumber: 2.1 Consensus size: 23
763141 TAATATAATA
763151 TAATATATTATATTCTACTAAAT
1 TAATATATTATATTCTACTAAAT
* * *
763174 TAATATTTTAGTATTTTATTAAAT
1 TAATATATTA-TATTCTACTAAAT
763198 TA
1 TA
763200 TTTTATATTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 9 0.41
24 13 0.59
ACGTcount: A:0.41, C:0.04, G:0.02, T:0.53
Consensus pattern (23 bp):
TAATATATTATATTCTACTAAAT
Found at i:768897 original size:81 final size:81
Alignment explanation
Indices: 768793--769821 Score: 1310
Period size: 81 Copynumber: 12.7 Consensus size: 81
768783 TCAACAATGT
* * *
768793 TTAATCGTTCATCTAACTGGCATAATTGACACTTTTCTATCAAATGCACAGCTAGGTCATTATTC
1 TTAACCGTTCATCTAACTGGCATAATTGACACTTTTCTGTCAAATGCACAGCTAGGCCATTATTC
* *
768858 TTTCACTCAACGATAC
66 TTTTACTCAACGGTAC
* * *
768874 TTAACCATTCATCTAACTGGCATAATTGATACCTTTCTGTCAAATGCACAGCTAGGCCATTATTC
1 TTAACCGTTCATCTAACTGGCATAATTGACACTTTTCTGTCAAATGCACAGCTAGGCCATTATTC
*
768939 ATTTACTCAACGGTAC
66 TTTTACTCAACGGTAC
* * * *
768955 TTAACTGTTCAACTAACTGGCATAATTGACACATTTCTGTCAAATGCACAACTAGGCCATTATTC
1 TTAACCGTTCATCTAACTGGCATAATTGACACTTTTCTGTCAAATGCACAGCTAGGCCATTATTC
*
769020 TTTTACTCAACGGTGC
66 TTTTACTCAACGGTAC
* * * * * * *
769036 TTAACCATTCATCTAATTGGCATAATTGATA-TCTTTCTGTCAAATGCACATCTATGTCGTTATT
1 TTAACCGTTCATCTAACTGGCATAATTGACACT-TTTCTGTCAAATGCACAGCTAGGCCATTATT
*
769100 CTTTTACTCAACGCTAC
65 CTTTTACTCAACGGTAC
* ** * * * *
769117 TAAATTGTTCATCTCACTGGCATAATTGACACATTTCTGTCAAATACACAACTAGGCCATTATTC
1 TTAACCGTTCATCTAACTGGCATAATTGACACTTTTCTGTCAAATGCACAGCTAGGCCATTATTC
* * *
769182 TTTTACTCAATGTTAT
66 TTTTACTCAACGGTAC
* * * *
769198 TTAACCGTTCATCTAACTGGCATAATTAACACTTTTATGTCAAATGCATAGCTAGACCATTATTC
1 TTAACCGTTCATCTAACTGGCATAATTGACACTTTTCTGTCAAATGCACAGCTAGGCCATTATTC
* *
769263 TTTTACTCAACAGTAT
66 TTTTACTCAACGGTAC
* * *
769279 TTAACCATTCATCTAACTGGCATAATTGACACTTTTATGTCAAATGCACAACTAGGCCATTATTC
1 TTAACCGTTCATCTAACTGGCATAATTGACACTTTTCTGTCAAATGCACAGCTAGGCCATTATTC
*
769344 TTTTACTCAAC-GTAAA
66 TTTTACTCAACGGT-AC
* * *
769360 TTAAGCGTTCATCTAACTGGCATAATTAACA-TTTTCTGTCAAATACACAGCTAGGCCATTATTC
1 TTAACCGTTCATCTAACTGGCATAATTGACACTTTTCTGTCAAATGCACAGCTAGGCCATTATTC
769424 TTTTACTCAACGGTAC
66 TTTTACTCAACGGTAC
* * * * *
769440 TTAATCGTTCATCTAACTAGCATAATTGACA-TATTTCTATTAAATGCACAGCTAAGCCATTATT
1 TTAACCGTTCATCTAACTGGCATAATTGACACT-TTTCTGTCAAATGCACAGCTAGGCCATTATT
769504 CTTTTACTCAACGGTAC
65 CTTTTACTCAACGGTAC
* ** *
769521 TTAACCGTTCATCTAACTGGCATAATTGACACTTTTCTATCAAATTAACAGCTAAGCCATTATTC
1 TTAACCGTTCATCTAACTGGCATAATTGACACTTTTCTGTCAAATGCACAGCTAGGCCATTATTC
*
769586 TTTTACTTAACGGTAC
66 TTTTACTCAACGGTAC
* * * * * * *
769602 TTAATCGTTCATCTAACTGGCATAATCGAAACTTTTATGTCAATTGCACAACTAGGACATTATTC
1 TTAACCGTTCATCTAACTGGCATAATTGACACTTTTCTGTCAAATGCACAGCTAGGCCATTATTC
* *
769667 TTTTTCTCAATGGTAC
66 TTTTACTCAACGGTAC
* * * **
769683 TTAACTGTTAATCTAACTGGCATAATTGACACTTTTCTATCAAATTAACAGCTAGGCCATTATTC
1 TTAACCGTTCATCTAACTGGCATAATTGACACTTTTCTGTCAAATGCACAGCTAGGCCATTATTC
*
769748 TTTTACTTAACGGTAC
66 TTTTACTCAACGGTAC
* * * * * * *
769764 TTAACCGTTCATTTAACTAGCATAAATGACACCTTTCTGTCATATGCACTGTTAGGCC
1 TTAACCGTTCATCTAACTGGCATAATTGACACTTTTCTGTCAAATGCACAGCTAGGCC
769822 TCAAAGGCAC
Statistics
Matches: 816, Mismatches: 126, Indels: 12
0.86 0.13 0.01
Matches are distributed among these distances:
80 73 0.09
81 742 0.91
82 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.11, T:0.36
Consensus pattern (81 bp):
TTAACCGTTCATCTAACTGGCATAATTGACACTTTTCTGTCAAATGCACAGCTAGGCCATTATTC
TTTTACTCAACGGTAC
Found at i:769871 original size:68 final size:68
Alignment explanation
Indices: 769762--770086 Score: 490
Period size: 68 Copynumber: 4.8 Consensus size: 68
769752 ACTTAACGGT
* * * * *
769762 ACTTAACCGTTCATTTAACTAGCATAAATGACACCTTTCTGTCATATGCACTGTTAGGCCTCAAA
1 ACTTAGCCTTTCATCTAACTGGCATAAATGACACCTTTCTGTCATATGCACAGTTAGGCCTCAAA
769827 GGC
66 GGC
** * * *
769830 ACTTAGCCTTTCATCTAACTGGTGTAAATGAAACTTTTCTGTCATAAGCACAGTTAGGCCTCAAA
1 ACTTAGCCTTTCATCTAACTGGCATAAATGACACCTTTCTGTCATATGCACAGTTAGGCCTCAAA
769895 GGC
66 GGC
* * * *
769898 ACTTTGCCTTTCATCTAACT-GCATAAATGACACCTTTCTGCCATATGCATAGTTAGACCTCAAA
1 ACTTAGCCTTTCATCTAACTGGCATAAATGACACCTTTCTGTCATATGCACAGTTAGGCCTCAAA
*
769962 AGC
66 GGC
*
769965 ACTTAGCCTTTCATCTAACTGACATAAATGACACCTTTCTGTCATATGCACAGTTAGGCCTCAAA
1 ACTTAGCCTTTCATCTAACTGGCATAAATGACACCTTTCTGTCATATGCACAGTTAGGCCTCAAA
770030 GGC
66 GGC
*
770033 ACTTAGCCTTTCATCTAACTGGCATAAATGACACCTTTATGTCATATGCACAGT
1 ACTTAGCCTTTCATCTAACTGGCATAAATGACACCTTTCTGTCATATGCACAGT
770087 CATAAATGAC
Statistics
Matches: 228, Mismatches: 28, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
67 57 0.25
68 171 0.75
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.31
Consensus pattern (68 bp):
ACTTAGCCTTTCATCTAACTGGCATAAATGACACCTTTCTGTCATATGCACAGTTAGGCCTCAAA
GGC
Found at i:770025 original size:135 final size:136
Alignment explanation
Indices: 769762--770083 Score: 486
Period size: 135 Copynumber: 2.4 Consensus size: 136
769752 ACTTAACGGT
* * * *
769762 ACTTAACCGTTCATTTAACTAGCATAAATGACACCTTTCTGTCATATGCACTGTTAGGCCTCAAA
1 ACTTAGCCTTTCATCTAACTAGCATAAATGACACCTTTCTGTCATATGCACTGTTAGACCTCAAA
* *** *
769827 GGCACTTAGCCTTTCATCTAACTGGTGTAAATGAAACTTTTCTGTCATAAGCACAGTTAGGCCTC
66 AGCACTTAGCCTTTCATCTAACTGACATAAATGAAACCTTTCTGTCATAAGCACAGTTAGGCCTC
769892 AAAGGC
131 AAAGGC
* *
769898 ACTTTGCCTTTCATCTAACT-GCATAAATGACACCTTTCTGCCATATGCA-TAGTTAGACCTCAA
1 ACTTAGCCTTTCATCTAACTAGCATAAATGACACCTTTCTGTCATATGCACT-GTTAGACCTCAA
* *
769961 AAGCACTTAGCCTTTCATCTAACTGACATAAATGACACCTTTCTGTCATATGCACAGTTAGGCCT
65 AAGCACTTAGCCTTTCATCTAACTGACATAAATGAAACCTTTCTGTCATAAGCACAGTTAGGCCT
770026 CAAAGGC
130 CAAAGGC
* *
770033 ACTTAGCCTTTCATCTAACTGGCATAAATGACACCTTTATGTCATATGCAC
1 ACTTAGCCTTTCATCTAACTAGCATAAATGACACCTTTCTGTCATATGCAC
770084 AGTCATAAAT
Statistics
Matches: 167, Mismatches: 16, Indels: 5
0.89 0.09 0.03
Matches are distributed among these distances:
134 1 0.01
135 123 0.74
136 43 0.26
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.31
Consensus pattern (136 bp):
ACTTAGCCTTTCATCTAACTAGCATAAATGACACCTTTCTGTCATATGCACTGTTAGACCTCAAA
AGCACTTAGCCTTTCATCTAACTGACATAAATGAAACCTTTCTGTCATAAGCACAGTTAGGCCTC
AAAGGC
Found at i:770096 original size:32 final size:32
Alignment explanation
Indices: 770055--770118 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
770045 ATCTAACTGG
770055 CATAAATGACACCTTTATGTCATATGCACAGT
1 CATAAATGACACCTTTATGTCATATGCACAGT
*
770087 CATAAATGACACCTTTTTGTCATATGCACAGT
1 CATAAATGACACCTTTATGTCATATGCACAGT
770119 TAGGCCTAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.33, C:0.22, G:0.12, T:0.33
Consensus pattern (32 bp):
CATAAATGACACCTTTATGTCATATGCACAGT
Found at i:770428 original size:59 final size:59
Alignment explanation
Indices: 770347--770671 Score: 476
Period size: 59 Copynumber: 5.5 Consensus size: 59
770337 TCCCATACAA
* * * *
770347 AAATTCTTACATTTAATATGAATTTCTTATCATTTTAGCACAC-AAGGTGCCCTATATGG
1 AAATTCATACACTTAGTATGAATTTCTTAACATTTTAGCACACGAA-GTGCCCTATATGG
** * **
770406 AAATTTGTACACTTAGTATGAATTTCTTAACATTTTAGCACACGATGCACCCTATATGG
1 AAATTCATACACTTAGTATGAATTTCTTAACATTTTAGCACACGAAGTGCCCTATATGG
*
770465 AAATTCATACACTTAGTATAAATTTCTTAACATTTTA-CTACACGAAGTGCCCTATATGG
1 AAATTCATACACTTAGTATGAATTTCTTAACATTTTAGC-ACACGAAGTGCCCTATATGG
* *
770524 AAATTTC-TACACTTAGTATGAATTTCTTAACATTTTAGCACACGAAGTGTCCTATACGG
1 AAA-TTCATACACTTAGTATGAATTTCTTAACATTTTAGCACACGAAGTGCCCTATATGG
* *
770583 AAATTAATACACTTAGTATGAATTTCTTAACATTTTAGCACACGAAGTGCCCTATACGG
1 AAATTCATACACTTAGTATGAATTTCTTAACATTTTAGCACACGAAGTGCCCTATATGG
770642 AAATTCATACACTTAGTATGAATTTCTTAA
1 AAATTCATACACTTAGTATGAATTTCTTAA
770672 TTTTGTACAC
Statistics
Matches: 241, Mismatches: 20, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
58 3 0.01
59 233 0.97
60 5 0.02
ACGTcount: A:0.34, C:0.18, G:0.12, T:0.36
Consensus pattern (59 bp):
AAATTCATACACTTAGTATGAATTTCTTAACATTTTAGCACACGAAGTGCCCTATATGG
Found at i:770940 original size:2 final size:2
Alignment explanation
Indices: 770933--770964 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
770923 CCTAACATGA
770933 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
770965 TAAATTCATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:771580 original size:17 final size:17
Alignment explanation
Indices: 771558--771590 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
771548 ATAACTCAAT
*
771558 TACTCGTCATGATAAAA
1 TACTCGTAATGATAAAA
771575 TACTCGTAATGATAAA
1 TACTCGTAATGATAAA
771591 TATTGACCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.42, C:0.15, G:0.12, T:0.30
Consensus pattern (17 bp):
TACTCGTAATGATAAAA
Found at i:774190 original size:2 final size:2
Alignment explanation
Indices: 774183--774209 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
774173 TGTTGAACAT
774183 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
774210 CATCCCTTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:774381 original size:29 final size:29
Alignment explanation
Indices: 774348--774408 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
774338 AATTAATTAT
* * *
774348 TCTTTTATTCAACAGTGTTTTACCCTTCA
1 TCTTTTACTCAACAATGTTTAACCCTTCA
* *
774377 TCTTTTACTCAATAATGTTTAACCGTTCA
1 TCTTTTACTCAACAATGTTTAACCCTTCA
774406 TCT
1 TCT
774409 AACTGACATA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.23, C:0.23, G:0.07, T:0.48
Consensus pattern (29 bp):
TCTTTTACTCAACAATGTTTAACCCTTCA
Found at i:774487 original size:110 final size:110
Alignment explanation
Indices: 774292--774489 Score: 245
Period size: 110 Copynumber: 1.8 Consensus size: 110
774282 TATTTAGCCT
* * * ** * *
774292 TTCATCTAACTTGCATATTTGACACTTTTCTGTCAAATGTACAGCTAATTAATTATTCTTTTATT
1 TTCATCTAACTTGCATAATTGACACCTTTCTGTCAAATGCACAGCTAAGCAAATATTCTTTTACT
** *
774357 CAACAGTGTTTTACCCTTCATCTTTTACTCAATAATGTTTAACCG
66 CAACAGTACTTAACCCTTCATCTTTTACTCAATAATGTTTAACCG
*
774402 TTCATCTAAC-TGACATAATTGACACCTTTCTGTCAAATGCACAGCTAGGCAAATATTCTTTTAC
1 TTCATCTAACTTG-CATAATTGACACCTTTCTGTCAAATGCACAGCTAAGCAAATATTCTTTTAC
** **
774466 TCAATGGTACTTAACTGTTCATCT
65 TCAACAGTACTTAACCCTTCATCT
774490 AACTGCATAA
Statistics
Matches: 72, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
109 2 0.03
110 70 0.97
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41
Consensus pattern (110 bp):
TTCATCTAACTTGCATAATTGACACCTTTCTGTCAAATGCACAGCTAAGCAAATATTCTTTTACT
CAACAGTACTTAACCCTTCATCTTTTACTCAATAATGTTTAACCG
Found at i:774718 original size:81 final size:80
Alignment explanation
Indices: 774395--775557 Score: 1359
Period size: 81 Copynumber: 14.5 Consensus size: 80
774385 TCAATAATGT
* * * *
774395 TTAACCGTTCATCTAACTGACATAATTGACACCTTTCTGTCAAATGCACAGCTAGGCAAATATTC
1 TTAACCATTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGCTAGGCCATTATTC
*
774460 TTTTACTCAATGGTAC
66 TTTTACTCAA-CGTAC
** * *
774476 TTAACTGTTCATCTAACT-GCATAATTGATACCTTTCTGTCAAATGTACAGCTAGGCCATTATT-
1 TTAACCATTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGCTAGGCCATTATTC
*
774539 TTTTACTCAATGGTAC
66 TTTTACTCAA-CGTAC
* * * * * *
774555 TTAATCGTTCATCTAACTGGCATAATTGTCACCTTT-TTTCAAATGCACATCTAGGGCATTATTC
1 TTAACCATTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGCTAGGCCATTATTC
774619 TTTTACTCAACGGTAC
66 TTTTACTCAAC-GTAC
*
774635 TTAACCATTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGCTAGGCCATTAATC
1 TTAACCATTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGCTAGGCCATTATTC
* *
774700 CTTTAGTCAACAGTAC
66 TTTTACTCAAC-GTAC
* * *
774716 TTAACCATTCATCTAACTGCCATAATTGACACCTTTCTGTCAAATGTACAGCTAGACCATTATTC
1 TTAACCATTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGCTAGGCCATTATTC
*
774781 TTTTACTCAATGGTAC
66 TTTTACTCAA-CGTAC
* * *
774797 TT-ACTATTCATCTAACTGCCATAATTGACACCTTTCTGTCAAATGTACAGCTAGGCCATTATTC
1 TTAACCATTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGCTAGGCCATTATTC
774861 TTTTACTCAACGATAC
66 TTTTACTCAACG-TAC
** * * * *
774877 TTAACTGTTCATATAACTGGCATAATTGACACCTTTCTGTCAAATGAACAACTAGGCCATCATTC
1 TTAACCATTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGCTAGGCCATTATTC
*
774942 TTTTACTCAACAATAC
66 TTTTACTCAAC-GTAC
* *
774958 TTAACCGTTCATCTAACTAGCATAATTGACACCTTTCTGTCAAATGCACAGCTAGGCCATTATTC
1 TTAACCATTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGCTAGGCCATTATTC
* *
775023 TTTTACTCAATTGTGC
66 TTTTACTCAA-CGTAC
* * * *** * * * **
775039 TTAATCGTTTATCTAACAAACATAATTGGCACATTTCTGTCAAATGCACAACTAACCCATTATTC
1 TTAACCATTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGCTAGGCCATTATTC
* *
775104 TTTTCCTCAATGGTAC
66 TTTTACTCAA-CGTAC
* * * * * *
775120 TTAACCGTTCGTCTAATTGGTATAATTGACACCTTTATGTCAAATGCATAGCTAGGCCATTATTC
1 TTAACCATTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGCTAGGCCATTATTC
*
775185 TATTACTCAACGATAC
66 TTTTACTCAACG-TAC
* * * * *
775201 TTAACCTTTCATTTAACTGGCTTAATTGACACCTTTTCTATCAAATGCACAACTAGGCCATTATT
1 TTAACCATTCATCTAACTGGCATAATTGACACC-TTTCTGTCAAATGCACAGCTAGGCCATTATT
775266 CTTTTACTCAACAGTAC
65 CTTTTACTCAAC-GTAC
* * * * * *
775283 TTAATCATTCGTCTAACTGGCATAATTGACACCTTTGTATAAAATGCACAACTAGGCCATTATTC
1 TTAACCATTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGCTAGGCCATTATTC
775348 TTTTACTCAACGATAC
66 TTTTACTCAACG-TAC
* * * * *
775364 TTAATCATTCATCTAACTGGTATAATTGACACCTTTTCTGTAAAATGCACAACTAGGTCATTATT
1 TTAACCATTCATCTAACTGGCATAATTGACACC-TTTCTGTCAAATGCACAGCTAGGCCATTATT
775429 AC-TTTACTCAACGATAC
65 -CTTTTACTCAACG-TAC
* *
775446 TTAATCATTCATCTAACTGGCATAATTGACACC-TT-TGTCATAAATGCA-A-CTAGGTCATTAT
1 TTAACCATTCATCTAACTGGCATAATTGACACCTTTCTGTC--AAATGCACAGCTAGGCCATTAT
775507 TC-----CTCAAC--AC
64 TCTTTTACTCAACGTAC
*
775517 TTAATCATTCATCTAACTGGCATAAATTGACACCTTTCTGT
1 TTAACCATTCATCTAACTGGCAT-AATTGACACCTTTCTGT
775558 ATATAGGATT
Statistics
Matches: 956, Mismatches: 106, Indels: 47
0.86 0.10 0.04
Matches are distributed among these distances:
71 25 0.03
72 10 0.01
73 2 0.00
74 9 0.01
78 1 0.00
79 72 0.08
80 182 0.19
81 509 0.53
82 144 0.15
83 2 0.00
ACGTcount: A:0.30, C:0.23, G:0.11, T:0.36
Consensus pattern (80 bp):
TTAACCATTCATCTAACTGGCATAATTGACACCTTTCTGTCAAATGCACAGCTAGGCCATTATTC
TTTTACTCAACGTAC
Found at i:775765 original size:68 final size:68
Alignment explanation
Indices: 775656--775822 Score: 244
Period size: 68 Copynumber: 2.5 Consensus size: 68
775646 TTAGCGGCAT
* *
775656 CTTTCTGTCATATGCACAGTTAGGCCTCAAAGTCACTTAGCCTTTCATCTAACTGGCATAAATGA
1 CTTTCTGTCATATGCACAGTTAGGCCTCAAAGGCACTTAGCCTTTCATCTAACTGACATAAATGA
775721 CAC
66 CAC
* * *
775724 CTTTCTGTCATATGCACAGTTAGGCTTTAAGGGCACTTAGCCTTTCATCTAACTGACATAAATGA
1 CTTTCTGTCATATGCACAGTTAGGCCTCAAAGGCACTTAGCCTTTCATCTAACTGACATAAATGA
775789 CAC
66 CAC
* * * **
775792 ATTTCTATTATATGCACAGTTAAACCTCAAA
1 CTTTCTGTCATATGCACAGTTAGGCCTCAAA
775823 TCTTTTAACT
Statistics
Matches: 86, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
68 86 1.00
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.32
Consensus pattern (68 bp):
CTTTCTGTCATATGCACAGTTAGGCCTCAAAGGCACTTAGCCTTTCATCTAACTGACATAAATGA
CAC
Found at i:776111 original size:59 final size:58
Alignment explanation
Indices: 776034--776305 Score: 352
Period size: 59 Copynumber: 4.6 Consensus size: 58
776024 TATATTTCCC
* * *
776034 ATACAAAAATTCTTACACTTAATATGAATTTCTTATCATTTTAGAACA-AAATGTG-CCT
1 ATAC-AAAATTCATACACTTAGTATGAATTTCTTAACATTTTAGAACACAAA-GTGCCCT
*
776092 ATTACGAAAATTCATACACTTAGTATGAATTTCTTAACATTTTAGCACACAAAGTGCCCT
1 A-TAC-AAAATTCATACACTTAGTATGAATTTCTTAACATTTTAGAACACAAAGTGCCCT
* * * *
776152 ATACGGAAATTCATACACTTAATATGAATTTCTTAACATTTTAGAACACGAAGTACCCT
1 ATAC-AAAATTCATACACTTAGTATGAATTTCTTAACATTTTAGAACACAAAGTGCCCT
* *
776211 ATACAGAAATTGATACACTTAGTATGAATTTCTTAACATTTTAGCACA-AGAAGTGCCCT
1 ATACA-AAATTCATACACTTAGTATGAATTTCTTAACATTTTAGAACACA-AAGTGCCCT
*
776270 ATACAGAAATTCATACACTTAGTATGAATTTTTTAA
1 ATACA-AAATTCATACACTTAGTATGAATTTCTTAA
776306 TTTTGCACAC
Statistics
Matches: 191, Mismatches: 18, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
58 1 0.01
59 183 0.96
60 7 0.04
ACGTcount: A:0.39, C:0.17, G:0.10, T:0.35
Consensus pattern (58 bp):
ATACAAAATTCATACACTTAGTATGAATTTCTTAACATTTTAGAACACAAAGTGCCCT
Found at i:776192 original size:118 final size:118
Alignment explanation
Indices: 776034--776305 Score: 399
Period size: 118 Copynumber: 2.3 Consensus size: 118
776024 TATATTTCCC
* * * *
776034 ATACAAAAATTCTTACACTTAATATGAATTTCTTATCATTTTAGAACA-AAATGT-GCCTATTAC
1 ATACAGAAATTCATACACTTAATATGAATTTCTTAACATTTTAGAACACAAA-GTACCCTA-TAC
776097 -GAAAATTCATACACTTAGTATGAATTTCTTAACATTTTAGCACACA-AAGTGCCCT
64 AG-AAATTCATACACTTAGTATGAATTTCTTAACATTTTAGCACA-AGAAGTGCCCT
* *
776152 ATACGGAAATTCATACACTTAATATGAATTTCTTAACATTTTAGAACACGAAGTACCCTATACAG
1 ATACAGAAATTCATACACTTAATATGAATTTCTTAACATTTTAGAACACAAAGTACCCTATACAG
*
776217 AAATTGATACACTTAGTATGAATTTCTTAACATTTTAGCACAAGAAGTGCCCT
66 AAATTCATACACTTAGTATGAATTTCTTAACATTTTAGCACAAGAAGTGCCCT
* *
776270 ATACAGAAATTCATACACTTAGTATGAATTTTTTAA
1 ATACAGAAATTCATACACTTAATATGAATTTCTTAA
776306 TTTTGCACAC
Statistics
Matches: 140, Mismatches: 10, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
117 1 0.01
118 132 0.94
119 7 0.05
ACGTcount: A:0.39, C:0.17, G:0.10, T:0.35
Consensus pattern (118 bp):
ATACAGAAATTCATACACTTAATATGAATTTCTTAACATTTTAGAACACAAAGTACCCTATACAG
AAATTCATACACTTAGTATGAATTTCTTAACATTTTAGCACAAGAAGTGCCCT
Found at i:777749 original size:17 final size:17
Alignment explanation
Indices: 777727--777763 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
777717 TAAGTTTTTC
777727 AAATAATCATATA-TAAA
1 AAATAAT-ATATATTAAA
777744 AAATAATATATATTAAA
1 AAATAATATATATTAAA
777761 AAA
1 AAA
777764 ATTACCTTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 5 0.26
17 14 0.74
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (17 bp):
AAATAATATATATTAAA
Found at i:778142 original size:6 final size:6
Alignment explanation
Indices: 778133--778160 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
778123 ATTAGGATTC
778133 TTTTAT TTTTAT TTTTAT TTTTAT TTTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTT
778161 TTGAAACAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTAT
Found at i:789934 original size:81 final size:81
Alignment explanation
Indices: 789776--789944 Score: 202
Period size: 81 Copynumber: 2.1 Consensus size: 81
789766 AGATGCAGTG
* * *
789776 TCTTTTAGTATGTGGAATATATGGAAAAGTCTCCTAGATAAAAGGGAAGTGCTTTTTCGAGGATT
1 TCTTTTAGTATGAGGAATATATGGAAAAGTCTCCCAGATAAAAGGGAAGTGCTTTCTCGAGGATT
*
789841 GTTCATACAAAGGACAT
66 ATTCATACAAAGGAC-T
* * *
789858 TCTTTTA-TATGAGTAATCTATGGAAAAGTCTCCCAGAT-AAAGGGAATTGCGTTTCT-GAGGAT
1 TCTTTTAGTATGAGGAATATATGGAAAAGTCTCCCAGATAAAAGGGAAGTGC-TTTCTCGAGGAT
789920 TATTCGTATA-AAAGGACT
65 TATTC--ATACAAAGGACT
789938 TCCTTTT
1 T-CTTTT
789945 TATTTTATTT
Statistics
Matches: 76, Mismatches: 7, Indels: 9
0.83 0.08 0.10
Matches are distributed among these distances:
80 23 0.30
81 43 0.57
82 10 0.13
ACGTcount: A:0.31, C:0.12, G:0.21, T:0.35
Consensus pattern (81 bp):
TCTTTTAGTATGAGGAATATATGGAAAAGTCTCCCAGATAAAAGGGAAGTGCTTTCTCGAGGATT
ATTCATACAAAGGACT
Found at i:793839 original size:28 final size:28
Alignment explanation
Indices: 793799--793888 Score: 101
Period size: 28 Copynumber: 3.2 Consensus size: 28
793789 CTAAAGAAGC
*
793799 CAACCTGAAACACAT-TACCTCCTCAAAT
1 CAACCTGAAACAC-TCTACCTCCCCAAAT
793827 CAACCTGAAACACTCTACCTCCCCAAAT
1 CAACCTGAAACACTCTACCTCCCCAAAT
* * * * * *
793855 CAACCTAAAATACTCCACATTCCCAAGT
1 CAACCTGAAACACTCTACCTCCCCAAAT
793883 CAACCT
1 CAACCT
793889 AAGCCTTAAA
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
27 1 0.02
28 53 0.98
ACGTcount: A:0.38, C:0.39, G:0.03, T:0.20
Consensus pattern (28 bp):
CAACCTGAAACACTCTACCTCCCCAAAT
Found at i:795326 original size:57 final size:57
Alignment explanation
Indices: 795231--795463 Score: 224
Period size: 57 Copynumber: 4.0 Consensus size: 57
795221 ATACAATGTT
* *
795231 TTCAAATGAATTTTTAAAGAAGTTAAGTCTGGTTTTCAGTA-GTTTCTTGATGATTAA
1 TTCAAATGAATTTTTAAAGAAGCTAAGTCTGATTTTCAG-AGGTTTCTTGATGATTAA
* **
795288 TTCAAATGAATTTTTAAAGAAGCTAAGTCTGATGTTCAGAGGTTTCTTGATTGGCATGATGTT
1 TTCAAATGAATTTTTAAAGAAGCTAAGTCTGATTTTCAGAGGTTTCTTGA-T-G-AT--T-AA
* * * *
795351 TTCAAATGAATTTTTTAAA-ATGCTAAG-CTTGATTTT-TGAGGGTTTATTGATTATTACA
1 TTCAAATGAA-TTTTTAAAGAAGCTAAGTC-TGATTTTCAGA-GGTTTCTTGATGATTA-A
* * *
795409 -TAAAATGAATTTGTAAAGAAGCTAAGTTTGATTTTCAGAGGTTTCTTGATGATTA
1 TTCAAATGAATTTTTAAAGAAGCTAAGTCTGATTTTCAGAGGTTTCTTGATGATTA
795464 CTTGATTGAC
Statistics
Matches: 143, Mismatches: 19, Indels: 28
0.75 0.10 0.15
Matches are distributed among these distances:
56 8 0.06
57 81 0.57
58 4 0.03
59 1 0.01
60 4 0.03
62 5 0.03
63 32 0.22
64 8 0.06
ACGTcount: A:0.31, C:0.07, G:0.19, T:0.42
Consensus pattern (57 bp):
TTCAAATGAATTTTTAAAGAAGCTAAGTCTGATTTTCAGAGGTTTCTTGATGATTAA
Found at i:795415 original size:120 final size:122
Alignment explanation
Indices: 795226--795713 Score: 450
Period size: 131 Copynumber: 3.9 Consensus size: 122
795216 GATCAATACA
* * * * ** *
795226 ATGTTTTCAAATGAATTTTTAAAGAAGTTAAGTCTGGTTTTCAGTAGTTTCTTGATGATTA-ATT
1 ATGTTTTCAAATGAATTTTTAAATAAGCTAAGCCTGATTTTCAGGGGTTTATTGATGATTACA-T
* * *
795290 CAAATGAATTTTTAAAGAAGCTAAGTCTGATGTTCAGAGGTTTCTTGATTG-G-CATG
65 AAAATGAATTTTTAAAGAAGCTAAGTATGATTTTCAGAGGTTTCTTGATTGTGACATG
* * * *
795346 ATGTTTTCAAATGAATTTTTTAAA-ATGCTAAGCTTGATTTT-TGAGGGTTTATTGATTATTACA
1 ATGTTTTCAAATGAA-TTTTTAAATAAGCTAAGCCTGATTTTCAG-GGGTTTATTGATGATTACA
* *
795409 TAAAATGAATTTGTAAAGAAGCTAAGTTTGATTTTCAGAGGTTTCTTGATGATTACTTGATTGAC
64 TAAAATGAATTTTTAAAGAAGCTAAGTATGATTTTCAGAGGTTTC-T--TG---A-TTG--TGAC
795474 ATG
120 ATG
* * * *
795477 ATGTTTTCAAATGAATTTTTAAATAAGTTAAGCCTGATTTTCAGGGGTTTCTTGATGATTACTTC
1 ATGTTTTCAAATGAATTTTTAAATAAGCTAAGCCTGATTTTCAGGGGTTTATTGATGATTACATA
795542 AAATGAATTTTTAAAGAAGCTAAGTATGATTTTCAGAGGTTTCTTGATGAGTACTTGATTGACAT
66 AAATGAATTTTTAAAGAAGCTAAGTATGATTTTCAGAGGTTTC-T--T--G-A-TTG--TGACAT
795607 G
122 G
* * * * * *
795608 ATGTTTTCAAATTAATTTTTAAATAATCTAAGCCTGAGTTT-AAGGGCTTGTTGATGATTAC-TG
1 ATGTTTTCAAATGAATTTTTAAATAAGCTAAGCCTGATTTTCAGGGGTTTATTGATGATTACAT-
* * * * *
795671 TAAATGAATTTTTGAAGAAACTAAGTTTGATTTTCAAAGGTTT
65 AAAATGAATTTTTAAAGAAGCTAAGTATGATTTTCAGAGGTTT
795714 ATCGATGATA
Statistics
Matches: 313, Mismatches: 36, Indels: 28
0.83 0.10 0.07
Matches are distributed among these distances:
119 1 0.00
120 81 0.26
121 10 0.03
123 2 0.01
126 1 0.00
127 3 0.01
129 1 0.00
130 64 0.20
131 148 0.47
132 1 0.00
133 1 0.00
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (122 bp):
ATGTTTTCAAATGAATTTTTAAATAAGCTAAGCCTGATTTTCAGGGGTTTATTGATGATTACATA
AAATGAATTTTTAAAGAAGCTAAGTATGATTTTCAGAGGTTTCTTGATTGTGACATG
Found at i:795509 original size:131 final size:129
Alignment explanation
Indices: 795333--795722 Score: 505
Period size: 131 Copynumber: 3.0 Consensus size: 129
795323 TCAGAGGTTT
* * * * *
795333 CTTGATTGGCATGATGTTTTCAAATGAATTTTTTAAA-ATGCTAAGCTTGATTTTTGAGGGTTTA
1 CTTGATTGACATGATGTTTTCAAATGAA-TTTTTAAATAAGTTAAGCCTGA-TTTTAAGGGTTTA
* *
795397 TTGATTATTACATAAAATGAATTTGTAAAGAAGCTAAGTTTGATTTTCAGAGGTTTCTTGATGAT
64 TTGATGATTAC-TAAAATGAATTTTTAAAGAAGCTAAGTTTGATTTTCAGAGGTTTCTTGATGAT
795462 TA
128 TA
* *
795464 CTTGATTGACATGATGTTTTCAAATGAATTTTTAAATAAGTTAAGCCTGATTTTCAGGGGTTTCT
1 CTTGATTGACATGATGTTTTCAAATGAATTTTTAAATAAGTTAAGCCTGATTTT-AAGGGTTTAT
* * *
795529 TGATGATTACTTCAAATGAATTTTTAAAGAAGCTAAGTATGATTTTCAGAGGTTTCTTGATGAGT
65 TGATGATTAC-TAAAATGAATTTTTAAAGAAGCTAAGTTTGATTTTCAGAGGTTTCTTGATGATT
795594 A
129 A
* * * *
795595 CTTGATTGACATGATGTTTTCAAATTAATTTTTAAATAA-TCTAAGCCTGAGTTTAAGGGCTTGT
1 CTTGATTGACATGATGTTTTCAAATGAATTTTTAAATAAGT-TAAGCCTGATTTTAAGGGTTTAT
* * * * * *
795659 TGATGATTACTGTAAATGAATTTTTGAAGAAACTAAGTTTGATTTTCAAAGGTTTATCGATGAT
65 TGATGATTACT-AAAATGAATTTTTAAAGAAGCTAAGTTTGATTTTCAGAGGTTTCTTGATGAT
795723 AAGTCCTCCG
Statistics
Matches: 229, Mismatches: 26, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
129 1 0.00
130 74 0.32
131 154 0.67
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (129 bp):
CTTGATTGACATGATGTTTTCAAATGAATTTTTAAATAAGTTAAGCCTGATTTTAAGGGTTTATT
GATGATTACTAAAATGAATTTTTAAAGAAGCTAAGTTTGATTTTCAGAGGTTTCTTGATGATTA
Found at i:795535 original size:57 final size:57
Alignment explanation
Indices: 795482--795597 Score: 178
Period size: 57 Copynumber: 2.0 Consensus size: 57
795472 ACATGATGTT
* * * *
795482 TTCAAATGAATTTTTAAATAAGTTAAGCCTGATTTTCAGGGGTTTCTTGATGATTAC
1 TTCAAATGAATTTTTAAAGAAGCTAAGCATGATTTTCAGAGGTTTCTTGATGATTAC
* *
795539 TTCAAATGAATTTTTAAAGAAGCTAAGTATGATTTTCAGAGGTTTCTTGATGAGTAC
1 TTCAAATGAATTTTTAAAGAAGCTAAGCATGATTTTCAGAGGTTTCTTGATGATTAC
795596 TT
1 TT
795598 GATTGACATG
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
57 53 1.00
ACGTcount: A:0.31, C:0.09, G:0.18, T:0.41
Consensus pattern (57 bp):
TTCAAATGAATTTTTAAAGAAGCTAAGCATGATTTTCAGAGGTTTCTTGATGATTAC
Found at i:795796 original size:44 final size:44
Alignment explanation
Indices: 795746--795911 Score: 203
Period size: 44 Copynumber: 3.8 Consensus size: 44
795736 CATCTAATTT
*
795746 CATTTCGCTTGATTCCATCACATAAGGAGTTGGATCAGCATCAA
1 CATTTCGCTCGATTCCATCACATAAGGAGTTGGATCAGCATCAA
*
795790 CATTTCGCTCGATTCTATCACATAAGGAGTTGGATCAGCATCAA
1 CATTTCGCTCGATTCCATCACATAAGGAGTTGGATCAGCATCAA
* ** * *
795834 CTTTTTACTCTG-TTCCATCACATAAGGAGTTGGACCAG-AGTCAC
1 CATTTCGCTC-GATTCCATCACATAAGGAGTTGGATCAGCA-TCAA
* * *
795878 CATTTTGCTCAATTCCATCACA-AAAGAGTTGGAT
1 CATTTCGCTCGATTCCATCACATAAGGAGTTGGAT
795912 TAACTTCACG
Statistics
Matches: 106, Mismatches: 13, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
43 11 0.10
44 94 0.89
45 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (44 bp):
CATTTCGCTCGATTCCATCACATAAGGAGTTGGATCAGCATCAA
Found at i:796488 original size:80 final size:79
Alignment explanation
Indices: 796369--796524 Score: 276
Period size: 80 Copynumber: 2.0 Consensus size: 79
796359 ATAAGATTAA
* *
796369 ATTGGAGTATTCATAATTTCATGATGATAAATGGAGCAATGGGTCATGTTTCCCGATTAACTTGA
1 ATTGGAGTATTCATAATTTCATGATGAGAAATGGAGCAATGGGTCACGTTTCCCGATTAACTTGA
796434 ATTCATTCGAACGG
66 ATTCATTCGAACGG
*
796448 ATTGGAGTTATTCATAATTTCATGATGAGAAATGGAGCAATGGGTCACGTTTCTCGATTAACTTG
1 ATTGGAG-TATTCATAATTTCATGATGAGAAATGGAGCAATGGGTCACGTTTCCCGATTAACTTG
796513 AATTCATTCGAA
65 AATTCATTCGAA
796525 TAGACCAACT
Statistics
Matches: 73, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
79 7 0.10
80 66 0.90
ACGTcount: A:0.31, C:0.13, G:0.21, T:0.35
Consensus pattern (79 bp):
ATTGGAGTATTCATAATTTCATGATGAGAAATGGAGCAATGGGTCACGTTTCCCGATTAACTTGA
ATTCATTCGAACGG
Found at i:798160 original size:21 final size:22
Alignment explanation
Indices: 798119--798161 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
798109 ATTTCCAACA
*
798119 TTTACATTTCAGTCTTTTTTTT
1 TTTACATTTCAGTCTTATTTTT
798141 TTTA-ATTTCAG-CATTATTTTT
1 TTTACATTTCAGTC-TTATTTTT
798162 CTGTTTGCTC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 1 0.05
21 14 0.74
22 4 0.21
ACGTcount: A:0.19, C:0.12, G:0.05, T:0.65
Consensus pattern (22 bp):
TTTACATTTCAGTCTTATTTTT
Found at i:807631 original size:11 final size:11
Alignment explanation
Indices: 807615--807639 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
807605 GGCCTTCTTA
807615 GGTTTGGACTG
1 GGTTTGGACTG
807626 GGTTTGGACTG
1 GGTTTGGACTG
807637 GGT
1 GGT
807640 CTGGGCCTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.08, G:0.48, T:0.36
Consensus pattern (11 bp):
GGTTTGGACTG
Found at i:808453 original size:123 final size:123
Alignment explanation
Indices: 808235--808551 Score: 501
Period size: 123 Copynumber: 2.6 Consensus size: 123
808225 GAATCAAACT
* * *
808235 AAGGTTGAACAACTTCTTCTCATTATAAACTTCTTCTTCCTCTTCAGACGAGTTCTTCTCAATAT
1 AAGGTTGAACAACTTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTAT
* *
808300 GAACTCCTTCTAGAAATGTTGATGTTGATCTATCTCCTTCTGTGATAGAGTCGAG-AA
66 GAACTCCTTCTAGAAAAGTTGATGCTGATCTATCTCCTTCTGTGATAGAGTCGAGAAA
* * *
808357 AAGGTTGAACAATTTCTTCTTTATTATGAACTTCTTCTTCCTCTTCAGATGATTTCTTCTCATTA
1 AAGGTTGAACAACTTCTTC-TCATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTA
*
808422 TGAACTCCTTCTGGAAAAGTTGATGCTGATCTATCTCCTTCTGTGATAGAGTCGAGAAA
65 TGAACTCCTTCTAGAAAAGTTGATGCTGATCTATCTCCTTCTGTGATAGAGTCGAGAAA
* * * *
808481 AAGGTTGAACAAGTTCTTCTGATTATGAACTTCTTCTTTCTCTTTAGATGAGTTCTTCTCATTAT
1 AAGGTTGAACAACTTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTAT
808546 GAACTC
66 GAACTC
808552 TCCCATTGAA
Statistics
Matches: 179, Mismatches: 14, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
122 18 0.10
123 141 0.79
124 20 0.11
ACGTcount: A:0.25, C:0.20, G:0.15, T:0.40
Consensus pattern (123 bp):
AAGGTTGAACAACTTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCATTAT
GAACTCCTTCTAGAAAAGTTGATGCTGATCTATCTCCTTCTGTGATAGAGTCGAGAAA
Found at i:809401 original size:42 final size:43
Alignment explanation
Indices: 809304--809401 Score: 108
Period size: 42 Copynumber: 2.3 Consensus size: 43
809294 AGGTCTTATG
* * *
809304 GATGGCCTGAAGGACTTATCCATCTTTGCTCGAAAGACTGACA
1 GATGGCCTGAAGGACTTAACCATCTATGATCGAAAGACTGACA
* * * * * *
809347 GATGACCCGAAGGATTTAAGCATC-ATGATCGAAAGACTTACT
1 GATGGCCTGAAGGACTTAACCATCTATGATCGAAAGACTGACA
809389 GATGGCCTGAAGG
1 GATGGCCTGAAGG
809402 GCATACAAAT
Statistics
Matches: 44, Mismatches: 11, Indels: 1
0.79 0.20 0.02
Matches are distributed among these distances:
42 25 0.57
43 19 0.43
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23
Consensus pattern (43 bp):
GATGGCCTGAAGGACTTAACCATCTATGATCGAAAGACTGACA
Found at i:809929 original size:241 final size:246
Alignment explanation
Indices: 809499--809987 Score: 925
Period size: 241 Copynumber: 2.0 Consensus size: 246
809489 TAAATGAGAA
809499 ACTTTGGAAATCGTTTTCTCATTTTTTCGAAATAACTTGTTAGTTGGGTAACATGCCCTCTCTTC
1 ACTTTGGAAATCGTTTTCTCATTTTTTCGAAATAACTTGTTAGTTGGGTAACATGCCCTCTCTTC
809564 AAAATAATGTATCTTCTATGGATTGCGTCCATCTATTCTTCATATGTTTGTGTGATTCCTGCACT
66 AAAATAATGTATCTTCTATGGATTGCGTCCATCTA-T-TTCATATGTTTGTGTGATTCCTGCACT
809629 TGAGGCTTGAATTCTACCTTCTACTTGTAAGGTATTTTGTCATCATGAATCTTCTTTTTCATACG
129 TGAGGCTTGAATTCTACCTTCTACTTGTAAGGTATTTTGTCATCATGAATCTTCTTTTTCATACG
809694 AAAATCTGTAAAAACCTCAATGTTTGAATGCAATCAAATGTATCAATGTAATG
194 AAAATCTGTAAAAACCTCAATGTTTGAATGCAATCAAATGTATCAATGTAATG
809747 ACTTTGGAAATCGTTTTCTCA-TTTTTCGAAATAACTTGTTAGTTGGGTAACATG-CC-CTCTTC
1 ACTTTGGAAATCGTTTTCTCATTTTTTCGAAATAACTTGTTAGTTGGGTAACATGCCCTCTCTTC
809809 AAAATAATGT-TCTTCTATGGATTGCGTCCATCTA-TTCATATGTTTGTGTGATTCCTGCACTTG
66 AAAATAATGTATCTTCTATGGATTGCGTCCATCTATTTCATATGTTTGTGTGATTCCTGCACTTG
809872 AGGCTTGAATTCTACCTTCTACTTGTAAGGTATTTTGTCATCATGAATCTTCTTTTTCATACGAA
131 AGGCTTGAATTCTACCTTCTACTTGTAAGGTATTTTGTCATCATGAATCTTCTTTTTCATACGAA
809937 AATCTGTAAAAACCTCAATGTTTGAATGCAATCAAATGTATCAATGTAATG
196 AATCTGTAAAAACCTCAATGTTTGAATGCAATCAAATGTATCAATGTAATG
809988 CATTTTCTAT
Statistics
Matches: 241, Mismatches: 0, Indels: 7
0.97 0.00 0.03
Matches are distributed among these distances:
241 145 0.60
244 24 0.10
245 16 0.07
246 2 0.01
247 33 0.14
248 21 0.09
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.40
Consensus pattern (246 bp):
ACTTTGGAAATCGTTTTCTCATTTTTTCGAAATAACTTGTTAGTTGGGTAACATGCCCTCTCTTC
AAAATAATGTATCTTCTATGGATTGCGTCCATCTATTTCATATGTTTGTGTGATTCCTGCACTTG
AGGCTTGAATTCTACCTTCTACTTGTAAGGTATTTTGTCATCATGAATCTTCTTTTTCATACGAA
AATCTGTAAAAACCTCAATGTTTGAATGCAATCAAATGTATCAATGTAATG
Found at i:812444 original size:89 final size:90
Alignment explanation
Indices: 812341--812505 Score: 262
Period size: 89 Copynumber: 1.8 Consensus size: 90
812331 AAGCTAGCTA
*
812341 AATATTATCCATAAAGCCAGGACGATTAACTAATTGCTTTT-GGGGGATAACTCAAGCTTTATTG
1 AATATTATCCATAAAGCCAGGACGATTAACCAATTG-TTTTAGGGGGATAACTCAAGCTTTATTG
812405 TATAT-ATAATAATATAGGCTATCTG
65 TATATAATAATAATATAGGCTATCTG
* * * *
812430 AATATTATCCATAAAGTCGGGGCTATTAACCAATTGTTTTAGGGGGATAACTCAAGCTTTATTGT
1 AATATTATCCATAAAGCCAGGACGATTAACCAATTGTTTTAGGGGGATAACTCAAGCTTTATTGT
812495 ATATAATAATA
66 ATATAATAATA
812506 GCATGAGTAT
Statistics
Matches: 69, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
88 4 0.06
89 59 0.86
90 6 0.09
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35
Consensus pattern (90 bp):
AATATTATCCATAAAGCCAGGACGATTAACCAATTGTTTTAGGGGGATAACTCAAGCTTTATTGT
ATATAATAATAATATAGGCTATCTG
Found at i:815143 original size:17 final size:16
Alignment explanation
Indices: 815123--815162 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
815113 AAAAAAGTGT
815123 AAATGCAAAAAATGCAG
1 AAATGCAAAAAAT-CAG
815140 AAATGC-AAAAATCAG
1 AAATGCAAAAAATCAG
815155 -AATGCAAA
1 AAATGCAAA
815163 TTGTGCAATG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 5 0.23
15 5 0.23
16 6 0.27
17 6 0.27
ACGTcount: A:0.60, C:0.12, G:0.15, T:0.12
Consensus pattern (16 bp):
AAATGCAAAAAATCAG
Found at i:815149 original size:15 final size:14
Alignment explanation
Indices: 815124--815162 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 14
815114 AAAAAGTGTA
815124 AATGCAAAAAATGCAG
1 AATGC-AAAAAT-CAG
815140 AAATGCAAAAATCAG
1 -AATGCAAAAATCAG
815155 AATGCAAA
1 AATGCAAA
815163 TTGTGCAATG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 8 0.36
15 3 0.14
16 6 0.27
17 5 0.23
ACGTcount: A:0.59, C:0.13, G:0.15, T:0.13
Consensus pattern (14 bp):
AATGCAAAAATCAG
Found at i:817869 original size:12 final size:13
Alignment explanation
Indices: 817840--817872 Score: 50
Period size: 12 Copynumber: 2.5 Consensus size: 13
817830 TAAGATTTTC
817840 TTTGAAAATCATTT
1 TTTG-AAATCATTT
817854 TTTGAAATCA-TT
1 TTTGAAATCATTT
817866 TTTGAAA
1 TTTGAAA
817873 ATTACTCCCC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 9 0.47
13 6 0.32
14 4 0.21
ACGTcount: A:0.36, C:0.06, G:0.09, T:0.48
Consensus pattern (13 bp):
TTTGAAATCATTT
Found at i:817874 original size:13 final size:14
Alignment explanation
Indices: 817840--817874 Score: 56
Period size: 13 Copynumber: 2.6 Consensus size: 14
817830 TAAGATTTTC
817840 TTTGAAAATCATTT
1 TTTGAAAATCATTT
817854 TTTG-AAATCA-TT
1 TTTGAAAATCATTT
817866 TTTGAAAAT
1 TTTGAAAAT
817875 TACTCCCCCT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 6 0.30
13 10 0.50
14 4 0.20
ACGTcount: A:0.37, C:0.06, G:0.09, T:0.49
Consensus pattern (14 bp):
TTTGAAAATCATTT
Found at i:818142 original size:20 final size:20
Alignment explanation
Indices: 818117--818161 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
818107 TATACCAATA
*
818117 TAAATTTAAACTAATC-AAAC
1 TAAATTCAAAC-AATCTAAAC
818137 TAAATTCAAACAATCTAAAC
1 TAAATTCAAACAATCTAAAC
*
818157 CAAAT
1 TAAAT
818162 ATATATATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 4 0.18
20 18 0.82
ACGTcount: A:0.56, C:0.18, G:0.00, T:0.27
Consensus pattern (20 bp):
TAAATTCAAACAATCTAAAC
Found at i:819946 original size:20 final size:20
Alignment explanation
Indices: 819921--819959 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
819911 CTTGAAAATG
819921 TGATGATCATAGCAGGTTTT
1 TGATGATCATAGCAGGTTTT
*
819941 TGATGATCGTAGCAGGTTT
1 TGATGATCATAGCAGGTTT
819960 AGGAGTTGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.23, C:0.10, G:0.28, T:0.38
Consensus pattern (20 bp):
TGATGATCATAGCAGGTTTT
Found at i:820204 original size:21 final size:21
Alignment explanation
Indices: 820180--820236 Score: 114
Period size: 21 Copynumber: 2.7 Consensus size: 21
820170 ACTATCATAG
820180 TGTATCGATACATAGTGAGGA
1 TGTATCGATACATAGTGAGGA
820201 TGTATCGATACATAGTGAGGA
1 TGTATCGATACATAGTGAGGA
820222 TGTATCGATACATAG
1 TGTATCGATACATAG
820237 GTATCGATAC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.33, C:0.11, G:0.26, T:0.30
Consensus pattern (21 bp):
TGTATCGATACATAGTGAGGA
Found at i:832661 original size:20 final size:20
Alignment explanation
Indices: 832638--832690 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 20
832628 AGACCCTGTG
*
832638 GGGGGTATCGGTTCCCTCCA
1 GGGGGAATCGGTTCCCTCCA
832658 GGGGGAATCGGTTCCCCTCCAAA
1 GGGGGAATCGGTT-CCCTCC--A
832681 GGGGGAATCG
1 GGGGGAATCG
832691 ATTTCCCTTC
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
20 12 0.41
21 6 0.21
23 11 0.38
ACGTcount: A:0.17, C:0.26, G:0.38, T:0.19
Consensus pattern (20 bp):
GGGGGAATCGGTTCCCTCCA
Found at i:832687 original size:23 final size:22
Alignment explanation
Indices: 832638--832717 Score: 83
Period size: 23 Copynumber: 3.7 Consensus size: 22
832628 AGACCCTGTG
* *
832638 GGGGGTATCGGTT-CCCTCC-A
1 GGGGGAATCGATTCCCCTCCAA
*
832658 GGGGGAATCGGTTCCCCTCCAAA
1 GGGGGAATCGATTCCCCTCC-AA
* *
832681 GGGGGAATCGATTTCCCTTCAA
1 GGGGGAATCGATTCCCCTCCAA
*
832703 GGGGGTATCGATTCC
1 GGGGGAATCGATTCC
832718 TCCTGGACCA
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
20 12 0.24
21 6 0.12
22 15 0.29
23 18 0.35
ACGTcount: A:0.17, C:0.26, G:0.33, T:0.24
Consensus pattern (22 bp):
GGGGGAATCGATTCCCCTCCAA
Found at i:836426 original size:24 final size:21
Alignment explanation
Indices: 836377--836425 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
836367 AAGCTTTAAT
*
836377 ATCATTAATTTTCTTTTGATG
1 ATCATCAATTTTCTTTTGATG
836398 ATCATCAATTTTCTTTTGATG
1 ATCATCAATTTTCTTTTGATG
836419 ATCATCA
1 ATCATCA
836426 TTGACCTTTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.27, C:0.14, G:0.08, T:0.51
Consensus pattern (21 bp):
ATCATCAATTTTCTTTTGATG
Found at i:836434 original size:21 final size:21
Alignment explanation
Indices: 836389--836434 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
836379 CATTAATTTT
**
836389 CTTTTGATGATCATCAATTTT
1 CTTTTGATGATCATCAATTAC
836410 CTTTTGATGATCATC-ATTGAC
1 CTTTTGATGATCATCAATT-AC
836431 CTTT
1 CTTT
836435 GAAAGTAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 3 0.14
21 19 0.86
ACGTcount: A:0.22, C:0.17, G:0.11, T:0.50
Consensus pattern (21 bp):
CTTTTGATGATCATCAATTAC
Found at i:836587 original size:22 final size:21
Alignment explanation
Indices: 836548--836589 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
836538 GATTATTTTC
836548 ATTTTTTAATTTTGAAATATA
1 ATTTTTTAATTTTGAAATATA
836569 ATTTTTGT-ATTTTGAAA-ATA
1 ATTTTT-TAATTTTGAAATATA
836589 A
1 A
836590 AGTCTTATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 4 0.20
21 15 0.75
22 1 0.05
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (21 bp):
ATTTTTTAATTTTGAAATATA
Found at i:849032 original size:234 final size:235
Alignment explanation
Indices: 848616--849087 Score: 822
Period size: 234 Copynumber: 2.0 Consensus size: 235
848606 TTCCGTGTTC
*
848616 GTCGACAATATTAGTAAAAACATTCACTCTTCTTATAATATTTTAAATTTGATACATAATAATCT
1 GTCGACAATATTAGTAAAAACATTCACTCTTCTTATAACATTTTAAATTTGATACATAATAATCT
* *
848681 GAAATTTAAGGTGTCACATTACACAATTAAAGTGACCATCAGATTTAAAATCTTAAAGAATTTAA
66 AAAATTTAAGATGTCACATTACACAATTAAAGTGACCATCAGATTTAAAATCTTAAAGAATTTAA
848746 TCAAATGTATTCAATACTCTTTAAAACATCTATATAAAATATATGGTAAATATAATTGTTAGGCT
131 TCAAATGTATTCAATACTCTTTAAAACATCTATATAAAATATATGGTAAATATAATTGTTAGGCT
848811 TACAAGCCTTAATGTTTGTTATATTACTTATGCATGTTTA
196 TACAAGCCTTAATGTTTGTTATATTACTTATGCATGTTTA
* * * * * *
848851 GTCGATAATATTAGTAAAAAGATTGACTCTTCTTATACCATTTTAAATTTGATCCGTAATAATC-
1 GTCGACAATATTAGTAAAAACATTCACTCTTCTTATAACATTTTAAATTTGATACATAATAATCT
*
848915 AAAAGTTTAAGATGTCACATTACACAATTAAAGTGATCATCA-ATTTAAAATCTTAAAGAATTTA
66 AAAA-TTTAAGATGTCACATTACACAATTAAAGTGACCATCAGATTTAAAATCTTAAAGAATTTA
848979 ATCAAATGTATTCAATACTCTTTAAAACATCTATATAAAATATATGGTAAATATAATTGTTAGGC
130 ATCAAATGTATTCAATACTCTTTAAAACATCTATATAAAATATATGGTAAATATAATTGTTAGGC
*
849044 TTACGAGCCTTAATGTTTGTTATATTACTTATGCATGTTTA
195 TTACAAGCCTTAATGTTTGTTATATTACTTATGCATGTTTA
849085 GTC
1 GTC
849088 CGATGTTTGT
Statistics
Matches: 225, Mismatches: 11, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
234 133 0.59
235 92 0.41
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.38
Consensus pattern (235 bp):
GTCGACAATATTAGTAAAAACATTCACTCTTCTTATAACATTTTAAATTTGATACATAATAATCT
AAAATTTAAGATGTCACATTACACAATTAAAGTGACCATCAGATTTAAAATCTTAAAGAATTTAA
TCAAATGTATTCAATACTCTTTAAAACATCTATATAAAATATATGGTAAATATAATTGTTAGGCT
TACAAGCCTTAATGTTTGTTATATTACTTATGCATGTTTA
Found at i:857034 original size:160 final size:160
Alignment explanation
Indices: 856851--857173 Score: 594
Period size: 160 Copynumber: 2.0 Consensus size: 160
856841 TCTGAAAAGG
* *
856851 CATCAATGTCCTTTGCTATATGTTTAAAACAAAGACGTTAACTCCGCGTAAGCCAAAAGACAAGC
1 CATCAATGTCCTTTGCCATATGTTTAAAACAAAGACGTTAACTCCGCGTAAACCAAAAGACAAGC
* *
856916 AAAAGTTATTTACAAAATCCTAACAACTATTACAAAAGAGGTTGAATCAAAGGACTATCGAGAGA
66 AAAAATTATTTACAAAATCCTAACAACTATTACAAAAAAGGTTGAATCAAAGGACTATCGAGAGA
856981 AACTTCCAGAGTAAAAA-CTGATTCACCAAA
131 AACTTCCAGAGTAAAAATC-GATTCACCAAA
857011 CATCAATGTCCTTTGCCATATGTTTAAAACAAAGACGTTAACTCCGCGTAAACCAAAAGACAAGC
1 CATCAATGTCCTTTGCCATATGTTTAAAACAAAGACGTTAACTCCGCGTAAACCAAAAGACAAGC
857076 AAAAATTATTTACAAAATCCTAACAACTATTACAAAAAAGGTTGAATCAAAGGACTATCGAGAGA
66 AAAAATTATTTACAAAATCCTAACAACTATTACAAAAAAGGTTGAATCAAAGGACTATCGAGAGA
857141 AACTTCCAGAGTAAAAATCGATTCACCAAA
131 AACTTCCAGAGTAAAAATCGATTCACCAAA
857171 CAT
1 CAT
857174 TGCCCATAAA
Statistics
Matches: 158, Mismatches: 4, Indels: 2
0.96 0.02 0.01
Matches are distributed among these distances:
160 157 0.99
161 1 0.01
ACGTcount: A:0.44, C:0.20, G:0.13, T:0.23
Consensus pattern (160 bp):
CATCAATGTCCTTTGCCATATGTTTAAAACAAAGACGTTAACTCCGCGTAAACCAAAAGACAAGC
AAAAATTATTTACAAAATCCTAACAACTATTACAAAAAAGGTTGAATCAAAGGACTATCGAGAGA
AACTTCCAGAGTAAAAATCGATTCACCAAA
Found at i:857489 original size:44 final size:44
Alignment explanation
Indices: 857418--857508 Score: 146
Period size: 44 Copynumber: 2.1 Consensus size: 44
857408 TAGTCTCTTG
* *
857418 ATGTGATCATTGTGAATCTCATCACCAACAAAGTTTGTTATATA
1 ATGTGATCATTGTCAATCCCATCACCAACAAAGTTTGTTATATA
* *
857462 ATGTGATCATTGTCAATCCCATTACCAATAAAGTTTGTTATATA
1 ATGTGATCATTGTCAATCCCATCACCAACAAAGTTTGTTATATA
857506 ATG
1 ATG
857509 GCCAAGTCAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.37
Consensus pattern (44 bp):
ATGTGATCATTGTCAATCCCATCACCAACAAAGTTTGTTATATA
Found at i:857922 original size:83 final size:81
Alignment explanation
Indices: 857697--858063 Score: 253
Period size: 83 Copynumber: 4.4 Consensus size: 81
857687 TTAGTAACAT
* * ** **** *
857697 TTTTATACAAATGCCATAATAGGGTT-ATTCTATAATGGCGTTTTTTCAACAATTGTCGC-A-AT
1 TTTTATACAAATGCCATAATAGGGTTCA-TCTATAGTAGAATTTTTTCAACAAACACCGCAACAA
* *
857759 AGAATTGTACTTTCGCGGTG
65 AGAA--GTAC-TTAGCAGTG
** * * ** ** * ** *
857779 TTTTTATACAAACACCACAATA-GATTCATCTATAGTAGCGTTTCCTAAACAAACGTCGCAACAG
1 -TTTTATACAAATGCCATAATAGGGTTCATCTATAGTAGAATTTTTTCAACAAACACCGCAACAA
857843 AGAAGTACTATAGCAGTG
65 AGAAGTACT-TAGCAGTG
*
857861 CTTTTATGA-AAATGCCATAATAGGGTTAATCTATAGTAGAATTTTTTCAACAAACACCGCAACA
1 -TTTTAT-ACAAATGCCATAATAGGGTTCATCTATAGTAGAATTTTTTCAACAAACACCGCAACA
* *
857925 AATTAA-TATGTTAGCAGTG
64 AA-GAAGTA-CTTAGCAGTG
* * * * *
857944 TTTTTATACAAATGCCACT-ATAGGGTTCATCTATAGTGGTATTTTTTCAATAAATACCTCAACA
1 -TTTTATACAAATGCCA-TAATAGGGTTCATCTATAGTAGAATTTTTTCAACAAACACCGCAACA
* * *
858008 TAGTAGTACGTTAGCGGTG
64 AAGAAGTAC-TTAGCAGTG
858027 TTTTCATACAAATGCCATAATAGGGTTCATCTATAGT
1 TTTT-ATACAAATGCCATAATAGGGTTCATCTATAGT
858064 GGCATTTATT
Statistics
Matches: 228, Mismatches: 42, Indels: 28
0.77 0.14 0.09
Matches are distributed among these distances:
81 1 0.00
82 60 0.26
83 158 0.69
84 9 0.04
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (81 bp):
TTTTATACAAATGCCATAATAGGGTTCATCTATAGTAGAATTTTTTCAACAAACACCGCAACAAA
GAAGTACTTAGCAGTG
Found at i:858064 original size:83 final size:83
Alignment explanation
Indices: 857853--858070 Score: 271
Period size: 83 Copynumber: 2.6 Consensus size: 83
857843 AGAAGTACTA
* *
857853 TAGCAGTGCTTTT-ATGA-AAATGCCATAATAGGGTTAATCTATAGTAGAATTTTTTCAACAAAC
1 TAGCAGTG-TTTTCAT-ACAAATGCCATAATAGGGTTCATCTATAGTGGAATTTTTTCAACAAAC
* *
857916 ACCGCAACAAATTAATATGT
64 ACCGCAACAAAGTAATACGT
* * * *
857936 TAGCAGTGTTTTTATACAAATGCCACT-ATAGGGTTCATCTATAGTGGTATTTTTTCAATAAATA
1 TAGCAGTGTTTTCATACAAATGCCA-TAATAGGGTTCATCTATAGTGGAATTTTTTCAACAAACA
* * *
858000 CCTCAACATAGTAGTACGT
65 CCGCAACAAAGTAATACGT
* *
858019 TAGCGGTGTTTTCATACAAATGCCATAATAGGGTTCATCTATAGTGGCATTT
1 TAGCAGTGTTTTCATACAAATGCCATAATAGGGTTCATCTATAGTGGAATTT
858071 ATTATAAAAA
Statistics
Matches: 118, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
82 6 0.05
83 111 0.94
84 1 0.01
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (83 bp):
TAGCAGTGTTTTCATACAAATGCCATAATAGGGTTCATCTATAGTGGAATTTTTTCAACAAACAC
CGCAACAAAGTAATACGT
Found at i:859741 original size:11 final size:11
Alignment explanation
Indices: 859725--859750 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
859715 TCACATGCCG
859725 TCCCTGAAACA
1 TCCCTGAAACA
859736 TCCCTGAAACA
1 TCCCTGAAACA
859747 TCCC
1 TCCC
859751 CAGGACTAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.31, C:0.42, G:0.08, T:0.19
Consensus pattern (11 bp):
TCCCTGAAACA
Found at i:860399 original size:50 final size:48
Alignment explanation
Indices: 860332--860552 Score: 155
Period size: 50 Copynumber: 4.4 Consensus size: 48
860322 AAAGATATAG
*
860332 TGATCTATCTCATTGCAACTTCAAGAAGATTAGATTTGAAAGCTGAAAAT
1 TGATCTA-CTCACTGCAACTTCAAGAA-ATTAGATTTGAAAGCTGAAAAT
* * *
860382 TGATCTACTCAACTGCAACTTTAGAGATATTAGATTTG-AAGATTGAAAAAT
1 TGATCTACTC-ACTGCAACTTCA-AGAAATTAGATTTGAAAG-CTG-AAAAT
* * * *
860433 TGATCTATTTCACTAG-AATTTC-AGAAAATTAGATATTCAAA-CTGAAATT
1 TGATCTA-CTCACT-GCAACTTCAAG-AAATTAGAT-TTGAAAGCTGAAAAT
* * * * *
860482 TGATATGCTCCACTGTAACTTCAGAGAAATT-GAATCTGAAAACTGAAAAT
1 TGATCTACT-CACTGCAACTTCA-AGAAATTAG-ATTTGAAAGCTGAAAAT
*
860532 TGATCTACTTCATTGCAACTT
1 TGATCTAC-TCACTGCAACTT
860553 TAGAAAGATA
Statistics
Matches: 133, Mismatches: 22, Indels: 32
0.71 0.12 0.17
Matches are distributed among these distances:
48 2 0.02
49 31 0.23
50 68 0.51
51 27 0.20
52 5 0.04
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.33
Consensus pattern (48 bp):
TGATCTACTCACTGCAACTTCAAGAAATTAGATTTGAAAGCTGAAAAT
Found at i:862730 original size:90 final size:89
Alignment explanation
Indices: 862604--862780 Score: 284
Period size: 90 Copynumber: 2.0 Consensus size: 89
862594 TAATCCCAAA
* * * * *
862604 TATTTAATTTCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAATCCCTGATATGAT
1 TATTAAATTCCAATGAATTAAATATAGATTTAATTAATTTGAAATAATAAAA-CCCTAATATGAC
862669 TAGGGTAACTTGG-ATATAAAAGGAT
65 TAGGGTAACTTGGCA-ATAAAAGGAT
862694 TATTAAATTCCAATGAATTAAATATAGATTTAATTAATTTGAAATAATAAAACCCTAATATGACT
1 TATTAAATTCCAATGAATTAAATATAGATTTAATTAATTTGAAATAATAAAACCCTAATATGACT
862759 AGGGTAACTTGGCAATAAAAGG
66 AGGGTAACTTGGCAATAAAAGG
862781 GTGTGTTAGG
Statistics
Matches: 81, Mismatches: 5, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
89 31 0.38
90 50 0.62
ACGTcount: A:0.45, C:0.07, G:0.12, T:0.36
Consensus pattern (89 bp):
TATTAAATTCCAATGAATTAAATATAGATTTAATTAATTTGAAATAATAAAACCCTAATATGACT
AGGGTAACTTGGCAATAAAAGGAT
Found at i:864454 original size:21 final size:22
Alignment explanation
Indices: 864428--864469 Score: 68
Period size: 21 Copynumber: 1.9 Consensus size: 22
864418 CCGAGGCTGA
864428 AGCGAGAGAAG-TAGAGAGAGC
1 AGCGAGAGAAGATAGAGAGAGC
864449 AGCGAGAGAAGCATAGAGAGA
1 AGCGAGAGAAG-ATAGAGAGA
864470 CGTATAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 11 0.58
23 8 0.42
ACGTcount: A:0.45, C:0.10, G:0.40, T:0.05
Consensus pattern (22 bp):
AGCGAGAGAAGATAGAGAGAGC
Found at i:864931 original size:142 final size:142
Alignment explanation
Indices: 864675--864958 Score: 559
Period size: 142 Copynumber: 2.0 Consensus size: 142
864665 TATTATTACT
864675 TAATTTGAATCGTAATTATATTTAAGATGGTTATTGGATATTGTTACAGGTTAAATTTGGGTAAT
1 TAATTTGAATCGTAATTATATTTAAGATGGTTATTGGATATTGTTACAGGTTAAATTTGGGTAAT
*
864740 ACATAATACGAAGAAGATATGTTGTAAATCAGTTTCGATTAGCGACGTTTTAGGGGCAAAACACC
66 ACATAATACGAAGAAGATATGTTGTAAATCAGTTTCGATTAACGACGTTTTAGGGGCAAAACACC
864805 AGTAATGGAGTG
131 AGTAATGGAGTG
864817 TAATTTGAATCGTAATTATATTTAAGATGGTTATTGGATATTGTTACAGGTTAAATTTGGGTAAT
1 TAATTTGAATCGTAATTATATTTAAGATGGTTATTGGATATTGTTACAGGTTAAATTTGGGTAAT
864882 ACATAATACGAAGAAGATATGTTGTAAATCAGTTTCGATTAACGACGTTTTAGGGGCAAAACACC
66 ACATAATACGAAGAAGATATGTTGTAAATCAGTTTCGATTAACGACGTTTTAGGGGCAAAACACC
864947 AGTAATGGAGTG
131 AGTAATGGAGTG
864959 CATACTTGGT
Statistics
Matches: 141, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
142 141 1.00
ACGTcount: A:0.35, C:0.08, G:0.22, T:0.35
Consensus pattern (142 bp):
TAATTTGAATCGTAATTATATTTAAGATGGTTATTGGATATTGTTACAGGTTAAATTTGGGTAAT
ACATAATACGAAGAAGATATGTTGTAAATCAGTTTCGATTAACGACGTTTTAGGGGCAAAACACC
AGTAATGGAGTG
Found at i:865221 original size:43 final size:45
Alignment explanation
Indices: 865167--865283 Score: 125
Period size: 44 Copynumber: 2.6 Consensus size: 45
865157 CGAACCTGTT
*
865167 GCGGCGTTTTTA-TACTA-AAACACCACTATATAACCTGACCTTTA
1 GCGGCGTTTTTAGTA-TACAAACACCACTACATAACCTGACCTTTA
** *
865211 GCGGCG-TTTTAGTATACAAATGCCACTACATAACCTGACTTTTA
1 GCGGCGTTTTTAGTATACAAACACCACTACATAACCTGACCTTTA
* * *
865255 GCGGCATTTATTAGTAGA-AAACTCCACTA
1 GCGGCGTTT-TTAGTATACAAACACCACTA
865284 ACAATAGCGG
Statistics
Matches: 61, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
43 7 0.11
44 36 0.59
45 11 0.18
46 7 0.11
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.31
Consensus pattern (45 bp):
GCGGCGTTTTTAGTATACAAACACCACTACATAACCTGACCTTTA
Found at i:867060 original size:24 final size:24
Alignment explanation
Indices: 867032--867081 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
867022 ATATTTTCTA
*
867032 TATAATTTCTTATCCTTAAATTTT
1 TATAATTTCTTAACCTTAAATTTT
*
867056 TATAATTTCTTAACCTTAATTTTT
1 TATAATTTCTTAACCTTAAATTTT
867080 TA
1 TA
867082 ATATAAATTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.30, C:0.12, G:0.00, T:0.58
Consensus pattern (24 bp):
TATAATTTCTTAACCTTAAATTTT
Found at i:871907 original size:23 final size:23
Alignment explanation
Indices: 871872--871947 Score: 109
Period size: 23 Copynumber: 3.3 Consensus size: 23
871862 GAATAGCGTA
871872 CCAC-AAAGATAGAGATAAACGTG
1 CCACAAAAG-TAGAGATAAACGTG
*
871895 CCATAAAAGTAGAGATAAACGTG
1 CCACAAAAGTAGAGATAAACGTG
* *
871918 CCACAAAAGCAGAGGTAAACGTG
1 CCACAAAAGTAGAGATAAACGTG
871941 CCACAAA
1 CCACAAA
871948 GGCATAATCA
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
23 44 0.92
24 4 0.08
ACGTcount: A:0.47, C:0.20, G:0.21, T:0.12
Consensus pattern (23 bp):
CCACAAAAGTAGAGATAAACGTG
Found at i:873049 original size:43 final size:41
Alignment explanation
Indices: 873001--873365 Score: 168
Period size: 44 Copynumber: 8.4 Consensus size: 41
872991 AAAATTTTAT
* *
873001 TTTTTACCTTTATAATTGAGGTCCTAATATTATTCCATCTCAC
1 TTTTTACCTTTATAATTGAGCTCCTAAT-TT-TTCAATCTCAC
* ** *
873044 TTTTTATCTTTATAATTGAATTCTCTAATTTTTTTTCAATC-C-T
1 TTTTTACCTTTATAATTGAGCTC-CTAA---TTTTTCAATCTCAC
* *
873087 TGTTTTACCTTTATAATTGAGACCCCTAATTTTGCAATCTCAC
1 T-TTTTACCTTTATAATTGAG-CTCCTAATTTTTCAATCTCAC
* **
873130 -TTTTAACTTTATAATTGAAGCTTTTAAGTTTTTTCAATCTCAC
1 TTTTTACCTTTATAATTG-AGCTCCTAA--TTTTTCAATCTCAC
* * * *
873173 TTTCTACATTT-TCAATTGAGGC-CCTAAGGTTTTTTTTCAATTTCAA
1 TTTTTACCTTTAT-AATTGA-GCTCCTAA-----TTTTTCAATCTCAC
* * * * *
873219 TTTCTACCTGTATAATTGAGGCCCCTAATTTTTTAATCCCAC
1 TTTTTACCTTTATAATTGA-GCTCCTAATTTTTCAATCTCAC
* * *
873261 TTTTTAACTTTATAATTGAGAC-CCTTAAGTTTTTTTAATCTTAC
1 TTTTTACCTTTATAATTGAG-CTCC-TAA--TTTTTCAATCTCAC
* * * * * *
873305 TTTCTAACTTTCTAATTGAGGCCCCTAAGTTTTTCCGATCTTA-
1 TTTTTACCTTTATAATTGA-GCTCCTAA-TTTTT-CAATCTCAC
* *
873348 ATTATACCTTTATAATTG
1 TTTTTACCTTTATAATTG
873366 GGGCCCCTAT
Statistics
Matches: 252, Mismatches: 44, Indels: 52
0.72 0.13 0.15
Matches are distributed among these distances:
41 32 0.13
42 33 0.13
43 58 0.23
44 79 0.31
45 10 0.04
46 33 0.13
47 7 0.03
ACGTcount: A:0.25, C:0.19, G:0.08, T:0.48
Consensus pattern (41 bp):
TTTTTACCTTTATAATTGAGCTCCTAATTTTTCAATCTCAC
Found at i:873206 original size:44 final size:42
Alignment explanation
Indices: 873100--873338 Score: 175
Period size: 44 Copynumber: 5.5 Consensus size: 42
873090 TTTACCTTTA
* *
873100 TAATTGAGACCCCTAA--TTTTGCAATCTCACTTT-TAACTTT
1 TAATTGAGGCCCCTAAGTTTTTTCAATCTCACTTTCTAA-TTT
* ***
873140 ATAATTGAAGCTTTTAAGTTTTTTCAATCTCACTTTCTACATTT
1 -TAATTGAGGCCCCTAAGTTTTTTCAATCTCACTTTCTA-ATTT
* * * *
873184 TCAATTGAGG-CCCTAAGGTTTTTTTTCAATTTCAATTTCTACCTGTA
1 T-AATTGAGGCCCCTAA-G--TTTTTTCAATCTCACTTTCTA-AT-TT
* *
873231 TAATTGAGGCCCCTAA-TTTTTT-AATCCCACTTTTTAACTTT
1 TAATTGAGGCCCCTAAGTTTTTTCAATCTCACTTTCTAA-TTT
* * * *
873272 ATAATTGAGACCCTTAAGTTTTTTTAATCTTACTTTCTAACTTT
1 -TAATTGAGGCCCCTAAGTTTTTTCAATCTCACTTTCTAA-TTT
873316 CTAATTGAGGCCCCTAAGTTTTT
1 -TAATTGAGGCCCCTAAGTTTTT
873339 CCGATCTTAA
Statistics
Matches: 156, Mismatches: 28, Indels: 25
0.75 0.13 0.12
Matches are distributed among these distances:
41 12 0.08
42 25 0.16
43 32 0.21
44 49 0.31
45 1 0.01
46 29 0.19
47 8 0.05
ACGTcount: A:0.26, C:0.19, G:0.09, T:0.46
Consensus pattern (42 bp):
TAATTGAGGCCCCTAAGTTTTTTCAATCTCACTTTCTAATTT
Found at i:873247 original size:131 final size:132
Alignment explanation
Indices: 873092--873338 Score: 349
Period size: 132 Copynumber: 1.9 Consensus size: 132
873082 ATCCTTGTTT
* * **
873092 TACCTTTATAATTGAGACCCCTAATTTTGCAATCTCAC-TTTTAACTTTATAATTGA-AGCTTTT
1 TACCTGTATAATTGAGACCCCTAATTTTGCAATCCCACTTTTTAACTTTATAATTGAGA-CCCTT
*
873155 AAGTTTTTTCAATCTCACTTTCTACATTTTC-AATTGAGG-CCCTAAGGTTTTTTTTCAATTTCA
65 AAGTTTTTTCAATCTCACTTTCTA-ACTTTCTAATTGAGGCCCCTAA-GTTTTTTTTCAATTTCA
873218 ATTTC
128 ATTTC
* **
873223 TACCTGTATAATTGAGGCCCCTAATTTTTTAATCCCACTTTTTAACTTTATAATTGAGACCCTTA
1 TACCTGTATAATTGAGACCCCTAATTTTGCAATCCCACTTTTTAACTTTATAATTGAGACCCTTA
* *
873288 AGTTTTTTTAATCTTACTTTCTAACTTTCTAATTGAGGCCCCTAAGTTTTT
66 AGTTTTTTCAATCTCACTTTCTAACTTTCTAATTGAGGCCCCTAAGTTTTT
873339 CCGATCTTAA
Statistics
Matches: 102, Mismatches: 10, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
131 38 0.37
132 57 0.56
133 7 0.07
ACGTcount: A:0.26, C:0.19, G:0.09, T:0.46
Consensus pattern (132 bp):
TACCTGTATAATTGAGACCCCTAATTTTGCAATCCCACTTTTTAACTTTATAATTGAGACCCTTA
AGTTTTTTCAATCTCACTTTCTAACTTTCTAATTGAGGCCCCTAAGTTTTTTTTCAATTTCAATT
TC
Found at i:873346 original size:44 final size:44
Alignment explanation
Indices: 873008--873425 Score: 254
Period size: 43 Copynumber: 9.6 Consensus size: 44
872998 TATTTTTTAC
* * * * *
873008 CTTTATAATTGAGG-TCCTAA-TATTATTCCATCTCACTTTTTAT
1 CTTTATAATTGAGGCCCCTAAGT-TTTTTCAATCTCACTTTCTAA
*** * * * * *
873051 CTTTATAATTGAATTCTCTAATTTTTTTTCAATC-C-TTGTTTTAC
1 CTTTATAATTGAGGCCCCTAA-GTTTTTTCAATCTCACT-TTCTAA
* *
873095 CTTTATAATTGAGACCCCTAA--TTTTGCAATCTCACTTT-TAA
1 CTTTATAATTGAGGCCCCTAAGTTTTTTCAATCTCACTTTCTAA
* ***
873136 CTTTATAATTGAAGCTTTTAAGTTTTTTCAATCTCACTTTCT-A
1 CTTTATAATTGAGGCCCCTAAGTTTTTTCAATCTCACTTTCTAA
* * *
873179 CATTT-TCAATTGAGG-CCCTAAGGTTTTTTTTCAATTTCAATTTCTAC
1 C-TTTAT-AATTGAGGCCCCTAA-G--TTTTTTCAATCTCACTTTCTAA
* * *
873226 CTGTATAATTGAGGCCCCTAA-TTTTTT-AATCCCACTTTTTAA
1 CTTTATAATTGAGGCCCCTAAGTTTTTTCAATCTCACTTTCTAA
* * * *
873268 CTTTATAATTGAGACCCTTAAGTTTTTTTAATCTTACTTTCTAA
1 CTTTATAATTGAGGCCCCTAAGTTTTTTCAATCTCACTTTCTAA
* * * * * * *
873312 CTTTCTAATTGAGGCCCCTAAGTTTTTCCGATCTTA-ATTATAC
1 CTTTATAATTGAGGCCCCTAAGTTTTTTCAATCTCACTTTCTAA
* * * *
873355 CTTTATAATTGGGGCCCCT-ATTTTTTTTAATCTCGA-TTTCTAC
1 CTTTATAATTGAGGCCCCTAAGTTTTTTCAATCTC-ACTTTCTAA
* * * *
873398 CTTTACAATTAAGGCCTCTAATTTTTTT
1 CTTTATAATTGAGGCCCCTAAGTTTTTT
873426 ATAATTTTTT
Statistics
Matches: 292, Mismatches: 62, Indels: 41
0.74 0.16 0.10
Matches are distributed among these distances:
41 27 0.09
42 41 0.14
43 90 0.31
44 89 0.30
45 8 0.03
46 29 0.10
47 8 0.03
ACGTcount: A:0.25, C:0.19, G:0.08, T:0.48
Consensus pattern (44 bp):
CTTTATAATTGAGGCCCCTAAGTTTTTTCAATCTCACTTTCTAA
Found at i:884850 original size:14 final size:14
Alignment explanation
Indices: 884830--884864 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
884820 TTTTTAGTTG
884830 ATTGGTAATTTAGT
1 ATTGGTAATTTAGT
*
884844 GTTGGTAATTTAGT
1 ATTGGTAATTTAGT
884858 ATTGGTA
1 ATTGGTA
884865 CAAAATCACC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.49
Consensus pattern (14 bp):
ATTGGTAATTTAGT
Found at i:885686 original size:131 final size:130
Alignment explanation
Indices: 885362--885700 Score: 342
Period size: 131 Copynumber: 2.6 Consensus size: 130
885352 CATTTCGGTC
* * *
885362 GGAGTAATAAATGACTACTTTAAGGCA-ATAAGAGGTCATTTATTCTCGATTGCAAATAATTTGA
1 GGAGTAATAAATGACTATTTTAATGCACA-AA-AGGTCATTTATTCTCGATTG-AAATAATTAGA
* * * * * * * * *
885426 TACTATCGTTTTCTCTCGAATTAATATCGATTTTTTACATAAAATATTAATATTTATTTGTTTCT
63 TATTATCATTTTCCCTCGAATTAATATCGAATTTTAACATAAAATAGTAACATTTATTTATTTCA
885491 ATT
128 ATT
* * * * * * *
885494 GGGGTAATAAATGACTTTTTTAATGCACAAAAGGTCTTTTATTCCCTAATGGAAATCATTAGATA
1 GGAGTAATAAATGACTATTTTAATGCACAAAAGGTCATTTATTCTC-GATTGAAATAATTAGATA
* * * * *
885559 TTATTATTTTCACCT-GAATTGATATTGAATTTTAAGATGAAATAGTAACATCTT-TTTATTTCA
65 TTATCATTTTC-CCTCGAATTAATATCGAATTTTAACATAAAATAGTAACAT-TTATTTATTTCA
885622 ATT
128 ATT
* * *
885625 GGAGTAATAAATGACTGTTTTAATGCACGAAAGGTCATTTATTATCGATTGAAAGTAATTAGATA
1 GGAGTAATAAATGACTATTTTAATGCACAAAAGGTCATTTATTCTCGATTGAAA-TAATTAGATA
*
885690 TTGTCATTTTC
65 TTATCATTTTC
885701 TCTCTTAAGA
Statistics
Matches: 167, Mismatches: 35, Indels: 11
0.78 0.16 0.05
Matches are distributed among these distances:
130 6 0.04
131 128 0.77
132 32 0.19
133 1 0.01
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.42
Consensus pattern (130 bp):
GGAGTAATAAATGACTATTTTAATGCACAAAAGGTCATTTATTCTCGATTGAAATAATTAGATAT
TATCATTTTCCCTCGAATTAATATCGAATTTTAACATAAAATAGTAACATTTATTTATTTCAATT
Found at i:890112 original size:2 final size:2
Alignment explanation
Indices: 890101--890141 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
890091 TAAGGGCGAT
890101 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
890142 CAATAAAGCT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 37 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:892146 original size:111 final size:112
Alignment explanation
Indices: 891666--893842 Score: 2564
Period size: 111 Copynumber: 19.5 Consensus size: 112
891656 AAACAGGTCT
* * * * **
891666 CTCTTTTCCAAGATTTGATATTCCCTGAGTGACTGTGGAACAAGTCTACCTTGATTCAATGGATC
1 CTCTCTTCCAAGATTTGATATTCCCTGAGTGACAGCGGAACAAGTCTGCCCCGATTCAATGGATC
* * * ** *
891731 AATTACCCCAGATATGATATTCCCTTTAGAAGAAGCAGAACATATCC
66 AACTCCCCCAGATCTGATATTCCCTTTAGAAGAAGTGGAACATATCA
* ** * * **
891778 CTCTCTTCCAAGATTTTATATTCCCTGAGTGAGGGCAGAAAAAGTCTGCCCTTATTCAATGGATC
1 CTCTCTTCCAAGATTTGATATTCCCTGAGTGACAGCGGAACAAGTCTGCCCCGATTCAATGGATC
* * *
891843 AACTCTCCCAGATCTGATATTCCCTTTAGATA-AAGTGGAATAGATC-
66 AACTCCCCCAGATCTGATATTCCCTTTAGA-AGAAGTGGAACATATCA
* * * *
891889 CTTCTCTTCCAAGATTTCATATTCCCTAAGTGACAGCGGAACAAGTCTGCTCCGATTTAATGGAT
1 C-TCTCTTCCAAGATTTGATATTCCCTGAGTGACAGCGGAACAAGTCTGCCCCGATTCAATGGAT
**
891954 CAACTCCCCCAGATCTGATATTCCCTTTAGAAGAAGAAGAACATATC-
65 CAACTCCCCCAGATCTGATATTCCCTTTAGAAGAAGTGGAACATATCA
* * * * *
892001 CATCTCTTCCAAGATTTGATATTCCCTGAGTGACAGCGGAACAAATCTACCCTGATTTAATAGAT
1 C-TCTCTTCCAAGATTTGATATTCCCTGAGTGACAGCGGAACAAGTCTGCCCCGATTCAATGGAT
* * * *
892066 CAACTCCCCCAGATATAATATTCAC-TTAGAAAAAGTGGAACATATCA
65 CAACTCCCCCAGATCTGATATTCCCTTTAGAAGAAGTGGAACATATCA
* * *
892113 CTCTCTTCCAAGGTTTGATATTCCCTGAGTGACAGCAGAACAAGTCTGCCCCGATTGAATGGATC
1 CTCTCTTCCAAGATTTGATATTCCCTGAGTGACAGCGGAACAAGTCTGCCCCGATTCAATGGATC
* * * * *
892178 AACT-CCCCAGATCTGAAATTCCCTTTAGAAGAAGTAGAATAGATCC
66 AACTCCCCCAGATCTGATATTCCCTTTAGAAGAAGTGGAACATATCA
* * * *
892224 CTCTCTTCCAAGATTTGATATTCCATGTGTGACAGCTGAACAAGTCTGTCCCGATTCAATGGATC
1 CTCTCTTCCAAGATTTGATATTCCCTGAGTGACAGCGGAACAAGTCTGCCCCGATTCAATGGATC
** * * *
892289 AACT-CCAAAGATATGATATTCCCTTTAGAATAAGTGGAACATATCC
66 AACTCCCCCAGATCTGATATTCCCTTTAGAAGAAGTGGAACATATCA
* * * *
892335 CTCTCTTCTAAGATTTGATATTCCCTGAATGACAGCGGAACGAGTCTTCCCCGATTCAATGGATC
1 CTCTCTTCCAAGATTTGATATTCCCTGAGTGACAGCGGAACAAGTCTGCCCCGATTCAATGGATC
* * * * *
892400 AAGTCCCCCAGATCTAATATTCCC-TTAGAAGAAATGAAACAAATCA
66 AACTCCCCCAGATCTGATATTCCCTTTAGAAGAAGTGGAACATATCA
* * *
892446 CTCTCTTCCAAGATTTGATATTCCCTTAGTGACAGCGGAACAAGTCTGCTCGGATTCAATGGATC
1 CTCTCTTCCAAGATTTGATATTCCCTGAGTGACAGCGGAACAAGTCTGCCCCGATTCAATGGATC
* *
892511 AACTCCCCCATATCTGATATTCCCTTTAGAAGAAGAGGAACATATC-
66 AACTCCCCCAGATCTGATATTCCCTTTAGAAGAAGTGGAACATATCA
*
892557 CATCTCTTCCAAGATTTGATATTCCCTGAGTGACAGCGGAACAAGTCTGCCTCGATTCAATGGAT
1 C-TCTCTTCCAAGATTTGATATTCCCTGAGTGACAGCGGAACAAGTCTGCCCCGATTCAATGGAT
* * *
892622 CAACTCCCCCAGATTTGATATTCCC-TTAGAAGAAGTAGAACATATGA
65 CAACTCCCCCAGATCTGATATTCCCTTTAGAAGAAGTGGAACATATCA
* * * * * **
892669 CTCTCTTCCACGATTGGTTATTCCCTTAGTAACAGCGGAATGAGTCTGCCCCGATTCAATGGATC
1 CTCTCTTCCAAGATTTGATATTCCCTGAGTGACAGCGGAACAAGTCTGCCCCGATTCAATGGATC
* * **
892734 AA-TTCCCTATGATCTGATATTCCCTTTAGAAGAAGCAGAACATATCA
66 AACTCCCCCA-GATCTGATATTCCCTTTAGAAGAAGTGGAACATATCA
* * * *
892781 TTCTCTTTCAAGATTTGATATTCCCTAATTGACAGCGGAA-AATGTCTG-CCCGATTCAATGGAT
1 CTCTCTTCCAAGATTTGATATTCCCTGAGTGACAGCGGAACAA-GTCTGCCCCGATTCAATGGAT
* * *
892844 CAACTCCCCCAGATCTGATATTCTCTTTAGAAGAAG-AGATACATATCC
65 CAACTCCCCCAGATCTGATATTCCCTTTAGAAGAAGTGGA-ACATATCA
* * * *
892892 CTCTGTTTCAAGATTTGATATTCCCTGAGTGACAGCGGAACGAGTCTACCCCGATTCAATGGATC
1 CTCTCTTCCAAGATTTGATATTCCCTGAGTGACAGCGGAACAAGTCTGCCCCGATTCAATGGATC
* * * *
892957 AACTCCCCCAGATCTGATATTCCC-TTAGAAGAAGCGAAAAAGATCA
66 AACTCCCCCAGATCTGATATTCCCTTTAGAAGAAGTGGAACATATCA
* * * * * * *
893003 CTCTCTTCCAATATTTGATAATCCCTGAGTGACAACGAAATAAGTCTGCCCCGATTCAATGAATA
1 CTCTCTTCCAAGATTTGATATTCCCTGAGTGACAGCGGAACAAGTCTGCCCCGATTCAATGGATC
* ** * ** *
893068 AACTCCCCTAGATCCAATATT-CCTTTACAAGAAACGGAACATATGA
66 AACTCCCCCAGATCTGATATTCCCTTTAGAAGAAGTGGAACATATCA
* * ** * *
893114 CTATCTTCCAATATTTGATATTCCCTGAGTGACAGCGGAATGAGTCTGCCCCAATTCAATGCATC
1 CTCTCTTCCAAGATTTGATATTCCCTGAGTGACAGCGGAACAAGTCTGCCCCGATTCAATGGATC
* * * * *
893179 AACT-CCCCACGATATAATATTCCCTTTAAAAGAAGCGAAACATATCA
66 AACTCCCCCA-GATCTGATATTCCCTTTAGAAGAAGTGGAACATATCA
* * *
893226 TTCTCTTCCAAGATTTGATATTCCCTGAGTGACAGCGGAACATGTCTGCCCTGATTCAATGGATC
1 CTCTCTTCCAAGATTTGATATTCCCTGAGTGACAGCGGAACAAGTCTGCCCCGATTCAATGGATC
* * * * *
893291 AAATCCCCTAGATATGATATTCCCTTTAGAAGAAGTGGAACAAATCC
66 AACTCCCCCAGATCTGATATTCCCTTTAGAAGAAGTGGAACATATCA
* * *
893338 CTCTCTTTCAAGATTTGATATTCCCTGAGTGACAGCGGAACGAGTCTGCCCCAATTCAATGGATC
1 CTCTCTTCCAAGATTTGATATTCCCTGAGTGACAGCGGAACAAGTCTGCCCCGATTCAATGGATC
* * *
893403 AACTCCCCCAGATATGATATTCCC-TTAGAAGAAGAGAAACATATCA
66 AACTCCCCCAGATCTGATATTCCCTTTAGAAGAAGTGGAACATATCA
* * *
893449 CTATCTTCCAAGATTTGATATTCCCTGAGTGACATCGGAACAAGTCTTCCCCGATTCAATGGATC
1 CTCTCTTCCAAGATTTGATATTCCCTGAGTGACAGCGGAACAAGTCTGCCCCGATTCAATGGATC
* * * * *
893514 AACTCCCCTATATTTGATATTCCC-TTAGAAGAAGTAGAACATATGA
66 AACTCCCCCAGATCTGATATTCCCTTTAGAAGAAGTGGAACATATCA
* * * * * *
893560 TTTTCTTCCAAGATTTGATATTCGCCCGAGTGACAGCGAAACGAGTCTTCCCCGATTCAATGGAT
1 CTCTCTTCCAAGATTTGATATTC-CCTGAGTGACAGCGGAACAAGTCTGCCCCGATTCAATGGAT
* ** *
893625 CAACT-CCCCACGATTTGATATTCCCTTTAGAAGAAGCAGAACATATAA
65 CAACTCCCCCA-GATCTGATATTCCCTTTAGAAGAAGTGGAACATATCA
* * * * * *
893673 TTCTCTTCCAAGATTTGATATTCCCTAAGTGACAGCGGAAC-ATTCTACCCCGATTCAGTAGATC
1 CTCTCTTCCAAGATTTGATATTCCCTGAGTGACAGCGGAACAAGTCTGCCCCGATTCAATGGATC
* * * *
893737 AACTCCCCTAGATCTGATATTCCCTTTAGAAGAAGCGAAACATGTC-
66 AACTCCCCCAGATCTGATATTCCCTTTAGAAGAAGTGGAACATATCA
* * **
893783 CATCTCTTTCAAGATTTTG-TATTCCCT-AGTGACAGCAGAACAAGTCTGTACCGATTCAAT
1 C-TCTCTTCCAAGA-TTTGATATTCCCTGAGTGACAGCGGAACAAGTCTGCCCCGATTCAAT
893843 CTTCCCTAAG
Statistics
Matches: 1772, Mismatches: 265, Indels: 57
0.85 0.13 0.03
Matches are distributed among these distances:
110 42 0.02
111 931 0.53
112 752 0.42
113 47 0.03
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (112 bp):
CTCTCTTCCAAGATTTGATATTCCCTGAGTGACAGCGGAACAAGTCTGCCCCGATTCAATGGATC
AACTCCCCCAGATCTGATATTCCCTTTAGAAGAAGTGGAACATATCA
Found at i:892579 original size:223 final size:224
Alignment explanation
Indices: 891666--893842 Score: 2490
Period size: 223 Copynumber: 9.8 Consensus size: 224
891656 AAACAGGTCT
* * * * **
891666 CTCTTTTCCAAGATTTGATATTCCCTGAGTGACTGTGGAACAAGTCTACCTTGATTCAATGGATC
1 CTCTCTTCCAAGATTTGATATTCCCTGAGTGACAGCGGAACAAGTCTGCCCCGATTCAATGGATC
* * * *
891731 AATTACCCCAGATATGATATTCCCTTTAGAAG-AA-GCAGAACATATCCCTCTCTTCCAAGATTT
66 AACTCCCCCAGATCTGATATTCCCTTTAGAAGAAATG-A-AACATATCACTCTCTTCCAAGATTT
* ** * * ** *
891794 TATATTCCCTGAGTGAGGGCAGAAAAAGTCTGCCCTTATTCAATGGATCAACTCTCCCAGATCTG
129 GATATTCCCTGAGTGACAGCGGAACAAGTCTGCCCCGATTCAATGGATCAACTCCCCCAGATCTG
* * *
891859 ATATTCCCTTTAGATA-AAGTGGAATAGATC-
194 ATATTCCCTTTAGA-AGAAGAGGAACATATCA
* * * *
891889 CTTCTCTTCCAAGATTTCATATTCCCTAAGTGACAGCGGAACAAGTCTGCTCCGATTTAATGGAT
1 C-TCTCTTCCAAGATTTGATATTCCCTGAGTGACAGCGGAACAAGTCTGCCCCGATTCAATGGAT
*
891954 CAACTCCCCCAGATCTGATATTCCCTTTAGAAGAAGAAG-AACATATC-CATCTCTTCCAAGATT
65 CAACTCCCCCAGATCTGATATTCCCTTTAGAAGAA-ATGAAACATATCAC-TCTCTTCCAAGATT
* * * * * *
892017 TGATATTCCCTGAGTGACAGCGGAACAAATCTACCCTGATTTAATAGATCAACTCCCCCAGATAT
128 TGATATTCCCTGAGTGACAGCGGAACAAGTCTGCCCCGATTCAATGGATCAACTCCCCCAGATCT
* * * *
892082 AATATTCAC-TTAGAAAAAGTGGAACATATCA
193 GATATTCCCTTTAGAAGAAGAGGAACATATCA
* * *
892113 CTCTCTTCCAAGGTTTGATATTCCCTGAGTGACAGCAGAACAAGTCTGCCCCGATTGAATGGATC
1 CTCTCTTCCAAGATTTGATATTCCCTGAGTGACAGCGGAACAAGTCTGCCCCGATTCAATGGATC
* * * * *
892178 AACT-CCCCAGATCTGAAATTCCCTTTAGAAGAAGT-AGAATAGATCCCTCTCTTCCAAGATTTG
66 AACTCCCCCAGATCTGATATTCCCTTTAGAAGAAATGA-AACATATCACTCTCTTCCAAGATTTG
* * * * ** *
892241 ATATTCCATGTGTGACAGCTGAACAAGTCTGTCCCGATTCAATGGATCAACT-CCAAAGATATGA
130 ATATTCCCTGAGTGACAGCGGAACAAGTCTGCCCCGATTCAATGGATCAACTCCCCCAGATCTGA
* * *
892305 TATTCCCTTTAGAATAAGTGGAACATATCC
195 TATTCCCTTTAGAAGAAGAGGAACATATCA
* * * *
892335 CTCTCTTCTAAGATTTGATATTCCCTGAATGACAGCGGAACGAGTCTTCCCCGATTCAATGGATC
1 CTCTCTTCCAAGATTTGATATTCCCTGAGTGACAGCGGAACAAGTCTGCCCCGATTCAATGGATC
* * *
892400 AAGTCCCCCAGATCTAATATTCCC-TTAGAAGAAATGAAACAAATCACTCTCTTCCAAGATTTGA
66 AACTCCCCCAGATCTGATATTCCCTTTAGAAGAAATGAAACATATCACTCTCTTCCAAGATTTGA
* * * *
892464 TATTCCCTTAGTGACAGCGGAACAAGTCTGCTCGGATTCAATGGATCAACTCCCCCATATCTGAT
131 TATTCCCTGAGTGACAGCGGAACAAGTCTGCCCCGATTCAATGGATCAACTCCCCCAGATCTGAT
892529 ATTCCCTTTAGAAGAAGAGGAACATATC-
196 ATTCCCTTTAGAAGAAGAGGAACATATCA
*
892557 CATCTCTTCCAAGATTTGATATTCCCTGAGTGACAGCGGAACAAGTCTGCCTCGATTCAATGGAT
1 C-TCTCTTCCAAGATTTGATATTCCCTGAGTGACAGCGGAACAAGTCTGCCCCGATTCAATGGAT
* * * * *
892622 CAACTCCCCCAGATTTGATATTCCC-TTAGAAGAAGT-AGAACATATGACTCTCTTCCACGATTG
65 CAACTCCCCCAGATCTGATATTCCCTTTAGAAGAAATGA-AACATATCACTCTCTTCCAAGATTT
* * * ** * *
892685 GTTATTCCCTTAGTAACAGCGGAATGAGTCTGCCCCGATTCAATGGATCAA-TTCCCTATGATCT
129 GATATTCCCTGAGTGACAGCGGAACAAGTCTGCCCCGATTCAATGGATCAACTCCCCCA-GATCT
892749 GATATTCCCTTTAGAAGAAGCA-GAACATATCA
193 GATATTCCCTTTAGAAGAAG-AGGAACATATCA
* * * *
892781 TTCTCTTTCAAGATTTGATATTCCCTAATTGACAGCGGAA-AATGTCTG-CCCGATTCAATGGAT
1 CTCTCTTCCAAGATTTGATATTCCCTGAGTGACAGCGGAACAA-GTCTGCCCCGATTCAATGGAT
* * * * *
892844 CAACTCCCCCAGATCTGATATTCTCTTTAGAAGAAGA-GATACATATCCCTCTGTTTCAAGATTT
65 CAACTCCCCCAGATCTGATATTCCCTTTAGAAGAA-ATGAAACATATCACTCTCTTCCAAGATTT
* *
892908 GATATTCCCTGAGTGACAGCGGAACGAGTCTACCCCGATTCAATGGATCAACTCCCCCAGATCTG
129 GATATTCCCTGAGTGACAGCGGAACAAGTCTGCCCCGATTCAATGGATCAACTCCCCCAGATCTG
* * * *
892973 ATATTCCC-TTAGAAGAAGCGAAAAAGATCA
194 ATATTCCCTTTAGAAGAAGAGGAACATATCA
* * * * * * *
893003 CTCTCTTCCAATATTTGATAATCCCTGAGTGACAACGAAATAAGTCTGCCCCGATTCAATGAATA
1 CTCTCTTCCAAGATTTGATATTCCCTGAGTGACAGCGGAACAAGTCTGCCCCGATTCAATGGATC
* ** * * * * * *
893068 AACTCCCCTAGATCCAATATT-CCTTTACAAGAAACGGAACATATGACTATCTTCCAATATTTGA
66 AACTCCCCCAGATCTGATATTCCCTTTAGAAGAAATGAAACATATCACTCTCTTCCAAGATTTGA
** * * * *
893132 TATTCCCTGAGTGACAGCGGAATGAGTCTGCCCCAATTCAATGCATCAACT-CCCCACGATATAA
131 TATTCCCTGAGTGACAGCGGAACAAGTCTGCCCCGATTCAATGGATCAACTCCCCCA-GATCTGA
* * *
893196 TATTCCCTTTAAAAGAAGCGAAACATATCA
195 TATTCCCTTTAGAAGAAGAGGAACATATCA
* * *
893226 TTCTCTTCCAAGATTTGATATTCCCTGAGTGACAGCGGAACATGTCTGCCCTGATTCAATGGATC
1 CTCTCTTCCAAGATTTGATATTCCCTGAGTGACAGCGGAACAAGTCTGCCCCGATTCAATGGATC
* * * * * * * *
893291 AAATCCCCTAGATATGATATTCCCTTTAGAAGAAGTGGAACAAATCCCTCTCTTTCAAGATTTGA
66 AACTCCCCCAGATCTGATATTCCCTTTAGAAGAAATGAAACATATCACTCTCTTCCAAGATTTGA
* * *
893356 TATTCCCTGAGTGACAGCGGAACGAGTCTGCCCCAATTCAATGGATCAACTCCCCCAGATATGAT
131 TATTCCCTGAGTGACAGCGGAACAAGTCTGCCCCGATTCAATGGATCAACTCCCCCAGATCTGAT
*
893421 ATTCCC-TTAGAAGAAGAGAAACATATCA
196 ATTCCCTTTAGAAGAAGAGGAACATATCA
* * *
893449 CTATCTTCCAAGATTTGATATTCCCTGAGTGACATCGGAACAAGTCTTCCCCGATTCAATGGATC
1 CTCTCTTCCAAGATTTGATATTCCCTGAGTGACAGCGGAACAAGTCTGCCCCGATTCAATGGATC
* * * * * * *
893514 AACTCCCCTATATTTGATATTCCC-TTAGAAGAAGT-AGAACATATGATTTTCTTCCAAGATTTG
66 AACTCCCCCAGATCTGATATTCCCTTTAGAAGAAATGA-AACATATCACTCTCTTCCAAGATTTG
* * * * *
893577 ATATTCGCCCGAGTGACAGCGAAACGAGTCTTCCCCGATTCAATGGATCAACT-CCCCACGATTT
130 ATATTC-CCTGAGTGACAGCGGAACAAGTCTGCCCCGATTCAATGGATCAACTCCCCCA-GATCT
*
893641 GATATTCCCTTTAGAAGAAGCA-GAACATATAA
193 GATATTCCCTTTAGAAGAAG-AGGAACATATCA
* * * * * *
893673 TTCTCTTCCAAGATTTGATATTCCCTAAGTGACAGCGGAAC-ATTCTACCCCGATTCAGTAGATC
1 CTCTCTTCCAAGATTTGATATTCCCTGAGTGACAGCGGAACAAGTCTGCCCCGATTCAATGGATC
* ** * *
893737 AACTCCCCTAGATCTGATATTCCCTTTAGAAGAAGCGAAACATGTC-CATCTCTTTCAAGATTTT
66 AACTCCCCCAGATCTGATATTCCCTTTAGAAGAAATGAAACATATCAC-TCTCTTCCAAGA-TTT
* **
893801 G-TATTCCCT-AGTGACAGCAGAACAAGTCTGTACCGATTCAAT
129 GATATTCCCTGAGTGACAGCGGAACAAGTCTGCCCCGATTCAAT
893843 CTTCCCTAAG
Statistics
Matches: 1677, Mismatches: 236, Indels: 83
0.84 0.12 0.04
Matches are distributed among these distances:
221 21 0.01
222 512 0.31
223 775 0.46
224 355 0.21
225 12 0.01
226 1 0.00
227 1 0.00
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (224 bp):
CTCTCTTCCAAGATTTGATATTCCCTGAGTGACAGCGGAACAAGTCTGCCCCGATTCAATGGATC
AACTCCCCCAGATCTGATATTCCCTTTAGAAGAAATGAAACATATCACTCTCTTCCAAGATTTGA
TATTCCCTGAGTGACAGCGGAACAAGTCTGCCCCGATTCAATGGATCAACTCCCCCAGATCTGAT
ATTCCCTTTAGAAGAAGAGGAACATATCA
Found at i:894054 original size:3 final size:3
Alignment explanation
Indices: 894048--894105 Score: 82
Period size: 3 Copynumber: 19.3 Consensus size: 3
894038 GTTTTTAATA
* *
894048 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAA TAT TAT TAT TAT TAAA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT
894094 TAT TAT T-T TAT T
1 TAT TAT TAT TAT T
894106 TTCTTGCAGT
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
2 2 0.04
3 45 0.92
4 2 0.04
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:894068 original size:15 final size:15
Alignment explanation
Indices: 894047--894105 Score: 93
Period size: 15 Copynumber: 3.9 Consensus size: 15
894037 TGTTTTTAAT
894047 ATATTATTATTATTA
1 ATATTATTATTATTA
*
894062 TTATTATTATTATTA
1 ATATTATTATTATTA
894077 ATATTATTATTATTAA
1 ATATTATTATTATT-A
894093 ATATTATT-TTATT
1 ATATTATTATTATT
894106 TTCTTGCAGT
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
15 32 0.78
16 9 0.22
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (15 bp):
ATATTATTATTATTA
Found at i:895354 original size:16 final size:17
Alignment explanation
Indices: 895331--895370 Score: 80
Period size: 17 Copynumber: 2.4 Consensus size: 17
895321 CTTTTAAGTT
895331 CTTTTTTTATTTTAGTC
1 CTTTTTTTATTTTAGTC
895348 CTTTTTTTATTTTAGTC
1 CTTTTTTTATTTTAGTC
895365 CTTTTT
1 CTTTTT
895371 ATGTGAATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.10, C:0.12, G:0.05, T:0.72
Consensus pattern (17 bp):
CTTTTTTTATTTTAGTC
Found at i:895483 original size:14 final size:14
Alignment explanation
Indices: 895464--895495 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
895454 TTGGGTAAAA
*
895464 ATATATATGTATAT
1 ATATATACGTATAT
895478 ATATATACGTATAT
1 ATATATACGTATAT
895492 ATAT
1 ATAT
895496 TTGTAAGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.44, C:0.03, G:0.06, T:0.47
Consensus pattern (14 bp):
ATATATACGTATAT
Found at i:895801 original size:21 final size:21
Alignment explanation
Indices: 895753--895802 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
895743 ATGACTATCA
895753 CAATGCGATTTTCCAATTTCG
1 CAATGCGATTTTCCAATTTCG
**
895774 CGTTGCGATTTTCCCAA-TTCG
1 CAATGCGATTTT-CCAATTTCG
895795 CAATGCGA
1 CAATGCGA
895803 ATAAGTAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.22, C:0.26, G:0.18, T:0.34
Consensus pattern (21 bp):
CAATGCGATTTTCCAATTTCG
Found at i:895839 original size:21 final size:21
Alignment explanation
Indices: 895792--895885 Score: 118
Period size: 21 Copynumber: 4.5 Consensus size: 21
895782 TTTTCCCAAT
** *
895792 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTTGGAAAA
*
895812 TCGCAATGAGAATTTGGAAAA
1 TCGCAATGCGAATTTGGAAAA
*
895833 TCACAATGCGAATTTGGAAAA
1 TCGCAATGCGAATTTGGAAAA
895854 TCGCAATGCGAATTTGGAAAA
1 TCGCAATGCGAATTTGGAAAA
* *
895875 CCGCAACGCGA
1 TCGCAATGCGA
895886 TACTGACTAT
Statistics
Matches: 64, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
20 11 0.17
21 53 0.83
ACGTcount: A:0.40, C:0.17, G:0.22, T:0.20
Consensus pattern (21 bp):
TCGCAATGCGAATTTGGAAAA
Found at i:895901 original size:20 final size:20
Alignment explanation
Indices: 895876--895988 Score: 95
Period size: 20 Copynumber: 5.6 Consensus size: 20
895866 TTTGGAAAAC
895876 CGCAACGCGATACTGACTAT
1 CGCAACGCGATACTGACTAT
* *
895896 CGCAACGCGATAAT-ACAAAAT
1 CGCAACGCGATACTGAC--TAT
*
895917 CGCAACGCGATACTGACTTT
1 CGCAACGCGATACTGACTAT
* * * *
895937 CGCAACTCGATACTTAATTT
1 CGCAACGCGATACTGACTAT
* *
895957 CGCAACTCAATACTGACCT-T
1 CGCAACGCGATACTGA-CTAT
*
895977 CGCAACGAGATA
1 CGCAACGCGATA
895989 ATACATAATT
Statistics
Matches: 75, Mismatches: 14, Indels: 8
0.77 0.14 0.08
Matches are distributed among these distances:
19 2 0.03
20 55 0.73
21 16 0.21
22 2 0.03
ACGTcount: A:0.34, C:0.28, G:0.16, T:0.22
Consensus pattern (20 bp):
CGCAACGCGATACTGACTAT
Found at i:895921 original size:41 final size:40
Alignment explanation
Indices: 895871--896008 Score: 134
Period size: 41 Copynumber: 3.4 Consensus size: 40
895861 GCGAATTTGG
*
895871 AAAACCGCAACGCGATACTGACTATCGCAACGCGATAATAC
1 AAAATCGCAACGCGATACTGACT-TCGCAACGCGATAATAC
* * *
895912 AAAATCGCAACGCGATACTGACTTTCGCAACTCGATACT-T
1 AAAATCGCAACGCGATACTGAC-TTCGCAACGCGATAATAC
** * * *
895952 AATTTCGCAACTCAATACTGACCTTCGCAACGAGATAATAC
1 AAAATCGCAACGCGATACTGA-CTTCGCAACGCGATAATAC
* * *
895993 ATAATTGCAATGCGAT
1 AAAATCGCAACGCGAT
896009 TTTCAAAGCA
Statistics
Matches: 75, Mismatches: 19, Indels: 6
0.75 0.19 0.06
Matches are distributed among these distances:
40 30 0.40
41 44 0.59
42 1 0.01
ACGTcount: A:0.36, C:0.26, G:0.15, T:0.22
Consensus pattern (40 bp):
AAAATCGCAACGCGATACTGACTTCGCAACGCGATAATAC
Found at i:896516 original size:20 final size:20
Alignment explanation
Indices: 896467--896525 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 20
896457 TTTATTCTAT
* **
896467 CGTTGCGATAGTCAAATTCG
1 CGTTGCGATTGTCATTTTCG
896487 CGTTGCGATTGTCATTTTCG
1 CGTTGCGATTGTCATTTTCG
* *
896507 TGTTGCGATTTTCATTTTC
1 CGTTGCGATTGTCATTTTC
896526 AGAAACTATT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.15, C:0.19, G:0.22, T:0.44
Consensus pattern (20 bp):
CGTTGCGATTGTCATTTTCG
Found at i:896714 original size:25 final size:24
Alignment explanation
Indices: 896660--896714 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 24
896650 TATGTTTTAT
* *
896660 TGTTTTTGGTATATCTTCACAGTG
1 TGTTTTTGGTATATCTTAACAGTA
896684 TAGTTTTTGGTATATC-TAACTTAGTA
1 T-GTTTTTGGTATATCTTAAC--AGTA
896710 TGTTT
1 TGTTT
896715 ATTGTTTTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
24 4 0.15
25 18 0.69
26 4 0.15
ACGTcount: A:0.20, C:0.09, G:0.18, T:0.53
Consensus pattern (24 bp):
TGTTTTTGGTATATCTTAACAGTA
Found at i:897874 original size:17 final size:18
Alignment explanation
Indices: 897844--897883 Score: 64
Period size: 17 Copynumber: 2.3 Consensus size: 18
897834 CTTCGGGAGC
*
897844 CACCTCACCCAGAGCTAT
1 CACCTCACCCAGAGCCAT
897862 CACCTCA-CCAGAGCCAT
1 CACCTCACCCAGAGCCAT
897879 CACCT
1 CACCT
897884 GATCGACCCG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 14 0.67
18 7 0.33
ACGTcount: A:0.28, C:0.47, G:0.10, T:0.15
Consensus pattern (18 bp):
CACCTCACCCAGAGCCAT
Found at i:898435 original size:20 final size:20
Alignment explanation
Indices: 898410--898455 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
898400 TAGTTTACTT
898410 TCGCAACACAAAAATGACTA
1 TCGCAACACAAAAATGACTA
* ** *
898430 TCGCAACGCGGAAATGGCTA
1 TCGCAACACAAAAATGACTA
898450 TCGCAA
1 TCGCAA
898456 TGCGAAATAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.39, C:0.26, G:0.20, T:0.15
Consensus pattern (20 bp):
TCGCAACACAAAAATGACTA
Found at i:898494 original size:31 final size:32
Alignment explanation
Indices: 898449--898537 Score: 135
Period size: 31 Copynumber: 2.8 Consensus size: 32
898439 GGAAATGGCT
* *
898449 ATCGCAATGCGAAATAAAAATCGCAACGACAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAA
*
898481 ATCGCAA-GCGAAATGAAAATCGTAACGACAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAA
*
898512 AGCGCAACGCGAAATGAAAATCGCAA
1 ATCGCAACGCGAAATGAAAATCGCAA
898538 TGCGATTTGT
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
31 28 0.54
32 24 0.46
ACGTcount: A:0.48, C:0.21, G:0.19, T:0.11
Consensus pattern (32 bp):
ATCGCAACGCGAAATGAAAATCGCAACGACAA
Found at i:898613 original size:19 final size:19
Alignment explanation
Indices: 898556--898614 Score: 74
Period size: 19 Copynumber: 3.4 Consensus size: 19
898546 GTGTTTCGTG
898556 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
898575 TTGCGA-TTT--TGTCG--
1 TTGCGATTTTCATTTCGCA
898589 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
898608 TTGCGAT
1 TTGCGAT
898615 AGCCATTTCC
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
14 6 0.18
15 3 0.09
16 4 0.12
17 4 0.12
18 3 0.09
19 13 0.39
ACGTcount: A:0.14, C:0.19, G:0.20, T:0.47
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:898621 original size:19 final size:19
Alignment explanation
Indices: 898587--898670 Score: 107
Period size: 19 Copynumber: 4.4 Consensus size: 19
898577 GCGATTTTGT
**
898587 CGTTGCGATTTTCATTTCG
1 CGTTGCGATAGTCATTTCG
* *
898606 CATTGCGATAGCCATTTCCG
1 CGTTGCGATAGTCATTT-CG
*
898626 CG-TGCGATAGTCATTCCG
1 CGTTGCGATAGTCATTTCG
898644 CGTTGCGATAGTCATTTCG
1 CGTTGCGATAGTCATTTCG
898663 CGTTGCGA
1 CGTTGCGA
898671 AAGTAAGTTT
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
18 4 0.07
19 48 0.87
20 3 0.05
ACGTcount: A:0.15, C:0.25, G:0.25, T:0.35
Consensus pattern (19 bp):
CGTTGCGATAGTCATTTCG
Found at i:898754 original size:25 final size:25
Alignment explanation
Indices: 898711--898770 Score: 95
Period size: 25 Copynumber: 2.4 Consensus size: 25
898701 CTTCTTCTTG
898711 AATGTTTATATATGCTGTCCTTTTA
1 AATGTTTATATATGCTGTCCTTTTA
898736 AATGTTATATATATG-TGTCCTTTTA
1 AATGTT-TATATATGCTGTCCTTTTA
*
898761 AATTTTTATA
1 AATGTTTATA
898771 AGTGCTTACT
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
24 4 0.12
25 21 0.64
26 8 0.24
ACGTcount: A:0.28, C:0.08, G:0.10, T:0.53
Consensus pattern (25 bp):
AATGTTTATATATGCTGTCCTTTTA
Found at i:899025 original size:21 final size:20
Alignment explanation
Indices: 898999--899067 Score: 66
Period size: 21 Copynumber: 3.4 Consensus size: 20
898989 CTGTCATTCC
898999 TCAAGAGTCCCCTCCAATCGT
1 TCAAGAGTCCCCTCC-ATCGT
* * **
899020 TCAAGAGGCCCCTATCATCCC
1 TCAAGAGTCCCCT-CCATCGT
* *
899041 TCAAGAGTCCCCCCCACCGT
1 TCAAGAGTCCCCTCCATCGT
899061 TCAAGAG
1 TCAAGAG
899068 GCCACTGTCA
Statistics
Matches: 37, Mismatches: 10, Indels: 3
0.74 0.20 0.06
Matches are distributed among these distances:
20 10 0.27
21 26 0.70
22 1 0.03
ACGTcount: A:0.25, C:0.41, G:0.16, T:0.19
Consensus pattern (20 bp):
TCAAGAGTCCCCTCCATCGT
Found at i:899079 original size:41 final size:42
Alignment explanation
Indices: 898989--899079 Score: 130
Period size: 41 Copynumber: 2.2 Consensus size: 42
898979 CCCGACTCAC
* * *
898989 CTGTCATTCCTCAAGAGTCCCCTCCAATCGTTCAAGAGGCCC
1 CTGTCATCCCTCAAGAGTCCCCTCCAACCGTTCAAGAGGCCA
* *
899031 CTATCATCCCTCAAGAGTCCCC-CCCACCGTTCAAGAGGCCA
1 CTGTCATCCCTCAAGAGTCCCCTCCAACCGTTCAAGAGGCCA
899072 CTGTCATC
1 CTGTCATC
899080 GTTGAAGAGG
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
41 23 0.53
42 20 0.47
ACGTcount: A:0.22, C:0.41, G:0.15, T:0.22
Consensus pattern (42 bp):
CTGTCATCCCTCAAGAGTCCCCTCCAACCGTTCAAGAGGCCA
Found at i:900521 original size:14 final size:14
Alignment explanation
Indices: 900487--900525 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
900477 TTGATTGTTT
900487 AATTGATTTGTAAA
1 AATTGATTTGTAAA
*
900501 AAATGATTTGTAAA
1 AATTGATTTGTAAA
**
900515 TGTTGATTTGT
1 AATTGATTTGT
900526 TTAATTGGTG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.36, C:0.00, G:0.18, T:0.46
Consensus pattern (14 bp):
AATTGATTTGTAAA
Found at i:900691 original size:19 final size:19
Alignment explanation
Indices: 900663--900706 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
900653 TCGCAACGAG
900663 AAAATCGCAATGCGAAATA
1 AAAATCGCAATGCGAAATA
* *
900682 AAAATTGCAATGCGAAATG
1 AAAATCGCAATGCGAAATA
900701 AAAATC
1 AAAATC
900707 ACAACGAGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.52, C:0.14, G:0.16, T:0.18
Consensus pattern (19 bp):
AAAATCGCAATGCGAAATA
Found at i:900773 original size:20 final size:20
Alignment explanation
Indices: 900748--900843 Score: 81
Period size: 20 Copynumber: 4.8 Consensus size: 20
900738 TCGCATTGCG
*
900748 ATTTTCTAGTTGCGATAGCC
1 ATTTTCGAGTTGCGATAGCC
* ***
900768 ATTTTCGCGTTGCGATTTTTC
1 ATTTTCGAGTTGCGA-TAGCC
900789 A-TTTCGCA-TTGCGATAGCC
1 ATTTTCG-AGTTGCGATAGCC
* *
900808 ATTTTCGCGTTGCGATAACC
1 ATTTTCGAGTTGCGATAGCC
900828 ATTTTCGCA-TTGCGAT
1 ATTTTCG-AGTTGCGAT
900844 TTCCCCGTTG
Statistics
Matches: 59, Mismatches: 12, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
19 3 0.05
20 53 0.90
21 3 0.05
ACGTcount: A:0.18, C:0.22, G:0.20, T:0.41
Consensus pattern (20 bp):
ATTTTCGAGTTGCGATAGCC
Found at i:900781 original size:34 final size:36
Alignment explanation
Indices: 900736--900823 Score: 108
Period size: 40 Copynumber: 2.4 Consensus size: 36
900726 GCGATTTTCA
*
900736 TTTCGCATTGCGATTTTC-TAG-TTGCGATAGCCAT
1 TTTCGCGTTGCGATTTTCTTAGATTGCGATAGCCAT
*
900770 TTTCGCGTTGCGATTTTTCATTTCGCATTGCGATAGCCAT
1 TTTCGCGTTGCGA-TTTTC--TTAG-ATTGCGATAGCCAT
900810 TTTCGCGTTGCGAT
1 TTTCGCGTTGCGAT
900824 AACCATTTTC
Statistics
Matches: 46, Mismatches: 2, Indels: 7
0.84 0.04 0.13
Matches are distributed among these distances:
34 12 0.26
35 5 0.11
38 2 0.04
39 1 0.02
40 26 0.57
ACGTcount: A:0.15, C:0.22, G:0.22, T:0.42
Consensus pattern (36 bp):
TTTCGCGTTGCGATTTTCTTAGATTGCGATAGCCAT
Found at i:900834 original size:40 final size:40
Alignment explanation
Indices: 900757--900843 Score: 131
Period size: 40 Copynumber: 2.2 Consensus size: 40
900747 GATTTTCTAG
***
900757 TTGCGATAGCCATTTTCGCGTTGCGATTTTTCATTTCGCA
1 TTGCGATAGCCATTTTCGCGTTGCGATTAACCATTTCGCA
900797 TTGCGATAGCCATTTTCGCGTTGCGA-TAACCATTTTCGCA
1 TTGCGATAGCCATTTTCGCGTTGCGATTAACCA-TTTCGCA
900837 TTGCGAT
1 TTGCGAT
900844 TTCCCCGTTG
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
39 3 0.07
40 40 0.93
ACGTcount: A:0.17, C:0.23, G:0.21, T:0.39
Consensus pattern (40 bp):
TTGCGATAGCCATTTTCGCGTTGCGATTAACCATTTCGCA
Found at i:901163 original size:21 final size:20
Alignment explanation
Indices: 901137--901184 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
901127 TCAGTATCGT
*
901137 ATTGCGATTTTCCAAATTCGC
1 ATTGCGA-TTTACAAATTCGC
**
901158 ATTGCGATTTACTTATTCGC
1 ATTGCGATTTACAAATTCGC
901178 ATTGCGA
1 ATTGCGA
901185 ATTAGGAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 17 0.71
21 7 0.29
ACGTcount: A:0.23, C:0.21, G:0.17, T:0.40
Consensus pattern (20 bp):
ATTGCGATTTACAAATTCGC
Found at i:901379 original size:12 final size:12
Alignment explanation
Indices: 901360--901393 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
901350 CTCTCCGACA
901360 ACATCCGTTCCT
1 ACATCCGTTCCT
*
901372 ATATCCGTTCCT
1 ACATCCGTTCCT
901384 ACATCC-TTCC
1 ACATCCGTTCC
901394 CCATCCGGCA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 4 0.20
12 16 0.80
ACGTcount: A:0.18, C:0.41, G:0.06, T:0.35
Consensus pattern (12 bp):
ACATCCGTTCCT
Found at i:901974 original size:24 final size:24
Alignment explanation
Indices: 901947--902000 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
901937 AGTATTCAAA
*
901947 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATATTGGTCAATACCCGGAC
* * *
901971 TTTGATATTGGTTAATACTCGGAT
1 TTTGATATTGGTCAATACCCGGAC
901995 TTTGAT
1 TTTGAT
902001 GATGTTTCAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.22, C:0.15, G:0.20, T:0.43
Consensus pattern (24 bp):
TTTGATATTGGTCAATACCCGGAC
Found at i:902183 original size:3 final size:3
Alignment explanation
Indices: 902175--902228 Score: 72
Period size: 3 Copynumber: 18.0 Consensus size: 3
902165 ATATAATCCT
* * * *
902175 GAA GAA GAA AAA GAA GAA GAA AAA GAA GAA GAA AAA GAA GAA GAA AAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
902223 GAA GAA
1 GAA GAA
902229 TAAAAAGTCC
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:902192 original size:12 final size:12
Alignment explanation
Indices: 902175--902235 Score: 113
Period size: 12 Copynumber: 5.1 Consensus size: 12
902165 ATATAATCCT
902175 GAAGAAGAAAAA
1 GAAGAAGAAAAA
902187 GAAGAAGAAAAA
1 GAAGAAGAAAAA
902199 GAAGAAGAAAAA
1 GAAGAAGAAAAA
902211 GAAGAAGAAAAA
1 GAAGAAGAAAAA
*
902223 GAAGAATAAAAA
1 GAAGAAGAAAAA
902235 G
1 G
902236 TCCCCGAAGA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
12 48 1.00
ACGTcount: A:0.74, C:0.00, G:0.25, T:0.02
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:904658 original size:19 final size:19
Alignment explanation
Indices: 904631--904676 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
904621 TGAACGCAAC
* *
904631 GCGAATTTAGTTTCGTGTT
1 GCGATTTTAGTTTCGCGTT
904650 GCGATTTTAGTTTCGCGTT
1 GCGATTTTAGTTTCGCGTT
*
904669 GTGATTTT
1 GCGATTTT
904677 GTCGTTGCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.13, C:0.11, G:0.26, T:0.50
Consensus pattern (19 bp):
GCGATTTTAGTTTCGCGTT
Found at i:906380 original size:91 final size:90
Alignment explanation
Indices: 906205--906389 Score: 300
Period size: 91 Copynumber: 2.0 Consensus size: 90
906195 ATTTCAAACT
*
906205 TTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGTTTAGC
1 TTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTT--A-AATAAACAGTTTAGC
906270 AGAATTGGCAGCAACCGAATAAATTTAC
63 AGAATTGGCAGCAACCGAATAAATTTAC
906298 TTCAACCAAAAGACAAAACAAAAAGACAAATACTAACTTCACAGTGTT-AATAAACAGTTTAGCA
1 TTCAACCAAAAGACAAAAC--AAAGACAAATACTAACTTCACAGTGTTAAATAAACAGTTTAGCA
*
906362 GTATTGGCAGCAACCGAATAAATTTAC
64 GAATTGGCAGCAACCGAATAAATTTAC
906389 T
1 T
906390 AAGCAATCTA
Statistics
Matches: 88, Mismatches: 2, Indels: 6
0.92 0.02 0.06
Matches are distributed among these distances:
91 42 0.48
93 19 0.22
95 27 0.31
ACGTcount: A:0.47, C:0.19, G:0.12, T:0.22
Consensus pattern (90 bp):
TTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAATAAACAGTTTAGCAGA
ATTGGCAGCAACCGAATAAATTTAC
Found at i:908067 original size:20 final size:20
Alignment explanation
Indices: 908042--908079 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
908032 TCTTTTGGTT
908042 GAAATGAAAATCGCAACGCG
1 GAAATGAAAATCGCAACGCG
**
908062 GAAATGACTATCGCAACG
1 GAAATGAAAATCGCAACG
908080 AGAGATTGCG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.42, C:0.21, G:0.24, T:0.13
Consensus pattern (20 bp):
GAAATGAAAATCGCAACGCG
Found at i:908733 original size:20 final size:20
Alignment explanation
Indices: 908681--908792 Score: 118
Period size: 20 Copynumber: 5.5 Consensus size: 20
908671 GCTATGTAAA
* *
908681 TCGCATTGCGATAGTAAG-AT
1 TCGCATTGCGAT-TTACGTAT
908701 TCGCATTGCGATTTACGTAT
1 TCGCATTGCGATTTACGTAT
* *
908721 TCGCATTGCGATTTTCCTAAT
1 TCGCATTGCGATTTACGT-AT
* * *
908742 TCGCATTGCAATTTACTTAA
1 TCGCATTGCGATTTACGTAT
* *
908762 TCGCGTTACGATTTACGTAT
1 TCGCATTGCGATTTACGTAT
908782 TCGCATTGCGA
1 TCGCATTGCGA
908793 ATTATGAAAA
Statistics
Matches: 75, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
19 3 0.04
20 55 0.73
21 17 0.23
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.38
Consensus pattern (20 bp):
TCGCATTGCGATTTACGTAT
Found at i:908756 original size:41 final size:40
Alignment explanation
Indices: 908699--908795 Score: 113
Period size: 41 Copynumber: 2.4 Consensus size: 40
908689 CGATAGTAAG
* * * *
908699 ATTCGCATTGCGATTTACGTATTCGCATTGCGATTTTCCT
1 ATTCGCATTGCAATTTACGTAATCGCATTACGATTTACCT
* * *
908739 AATTCGCATTGCAATTTACTTAATCGCGTTACGATTTACGT
1 -ATTCGCATTGCAATTTACGTAATCGCATTACGATTTACCT
908780 ATTCGCATTGCGAATT
1 ATTCGCATTGC-AATT
908796 ATGAAAATCG
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
40 11 0.23
41 37 0.77
ACGTcount: A:0.23, C:0.21, G:0.16, T:0.40
Consensus pattern (40 bp):
ATTCGCATTGCAATTTACGTAATCGCATTACGATTTACCT
Found at i:908853 original size:21 final size:20
Alignment explanation
Indices: 908782--908957 Score: 70
Period size: 21 Copynumber: 8.6 Consensus size: 20
908772 ATTTACGTAT
908782 TCGCATTGCGAATTATGAAAA
1 TCGCATTGCGAATTA-GAAAA
** *
908803 TCGCAACGCGAA-TACATAAA
1 TCGCATTGCGAATTAGA-AAA
*
908823 TCGCAGTGCGAATTAGGAAAA
1 TCGCATTGCGAATTA-GAAAA
* **
908844 TTGCATTGCG-A-TAGTCAGTA
1 TCGCATTGCGAATTAG--AAAA
* ** *
908864 TCGCATTGCGATTTTCCAAAT
1 TCGCATTGCGA-ATTAGAAAA
* *** *
908885 TCGCATTGCGATTTACTTAT
1 TCGCATTGCGAATTAGAAAA
*
908905 TCGCATTGCGAATTGGGAAAA
1 TCGCATTGCGAATT-AGAAAA
* ** *
908926 TCACAACGCGAAATTGGAAAA
1 TCGCATTGCG-AATTAGAAAA
908947 TCGCATTGCGA
1 TCGCATTGCGA
908958 TTGTCATAAT
Statistics
Matches: 113, Mismatches: 32, Indels: 21
0.68 0.19 0.13
Matches are distributed among these distances:
18 1 0.01
19 3 0.03
20 47 0.42
21 56 0.50
22 5 0.04
23 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (20 bp):
TCGCATTGCGAATTAGAAAA
Found at i:908908 original size:20 final size:21
Alignment explanation
Indices: 908864--908915 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 21
908854 ATAGTCAGTA
*
908864 TCGCATTGCGATTTTCCAAAT
1 TCGCATTGCGATTTTACAAAT
**
908885 TCGCATTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTACAAAT
908905 TCGCATTGCGA
1 TCGCATTGCGA
908916 ATTGGGAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 17 0.61
21 11 0.39
ACGTcount: A:0.21, C:0.23, G:0.17, T:0.38
Consensus pattern (21 bp):
TCGCATTGCGATTTTACAAAT
Found at i:909976 original size:131 final size:132
Alignment explanation
Indices: 909764--910131 Score: 338
Period size: 131 Copynumber: 2.8 Consensus size: 132
909754 CGATGATGGG
*** * ** * * **
909764 AATAGTAATATC-CTTTAATTTTGGTCGGAGTAATAAATGACTGCTTTAAGGTATAAAAGGTCAT
1 AATAGTAATATCTCTTT-ATTTCAATTGGAGTAATAAATGACTATTTTAATGCACGAAAGGTCAT
* * * * * * *
909828 TTATT-CTAGATTGGAAATAATTTGATATTATCGTTTTC-TTTCGAAT-TAATGTCGATTTTTTA
65 TTATTCCCAGATTCGAAATAATTAGATATTATCATTTTCACTT-GAATCAAAT-TCGA-ATTTTA
909890 A-ATGA
127 AGATGA
* * * * * *
909895 AATATTAATATCTCTTTGTTTCGATTGGGGTAATAAATGACTATTTTACTGCACGAAAGGTCGTT
1 AATAGTAATATCTCTTTATTTCAATTGGAGTAATAAATGACTATTTTAATGCACGAAAGGTCATT
* * **
909960 TATTCCCA-ATTCGAAATCATTAGATATTATTATTTTCACTTGAATCAAATTTTAATTTTAAGAT
66 TATTCCCAGATTCGAAATAATTAGATATTATCATTTTCACTTGAATCAAATTCGAATTTTAAGAT
910024 GA
131 GA
* * *
910026 AATAGTAATATCTTTTTATTTCAATTGGAGTAATAAATGACTGTTTTAATGTACGAAAGGTCATT
1 AATAGTAATATCTCTTTATTTCAATTGGAGTAATAAATGACTATTTTAATGCACGAAAGGTCATT
* * *
910091 TATTCTC-GATT-GAAAGTAATTAGATAATACCATTTTCACTT
66 TATTCCCAGATTCGAAA-TAATTAGATATTATCATTTTCACTT
910132 TTAAGATCAT
Statistics
Matches: 191, Mismatches: 39, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
130 10 0.05
131 170 0.89
132 11 0.06
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.42
Consensus pattern (132 bp):
AATAGTAATATCTCTTTATTTCAATTGGAGTAATAAATGACTATTTTAATGCACGAAAGGTCATT
TATTCCCAGATTCGAAATAATTAGATATTATCATTTTCACTTGAATCAAATTCGAATTTTAAGAT
GA
Found at i:919130 original size:32 final size:32
Alignment explanation
Indices: 919049--919138 Score: 85
Period size: 32 Copynumber: 2.8 Consensus size: 32
919039 GCTCTACATC
* * * * *
919049 ATCTGAATGCAATACTGACTTTGCTATGCATT
1 ATCTAAATGCAATACTGACTATACTAAGAATT
919081 ATCTAAATGTC-ATACTGACTATACTAAGAATT
1 ATCTAAATG-CAATACTGACTATACTAAGAATT
* *
919113 ATCTTAATGCAACACTGA-TACTACTA
1 ATCTAAATGCAATACTGACTA-TACTA
919139 TGCAACACAC
Statistics
Matches: 48, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
31 3 0.06
32 44 0.92
33 1 0.02
ACGTcount: A:0.36, C:0.19, G:0.11, T:0.34
Consensus pattern (32 bp):
ATCTAAATGCAATACTGACTATACTAAGAATT
Found at i:920835 original size:20 final size:20
Alignment explanation
Indices: 920812--920861 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
920802 TAACCATTTA
*
920812 GTATCGATAGCAGACCT-TTG
1 GTATCGATA-CACACCTATTG
* *
920832 GTATCAATACCCACCTATTG
1 GTATCGATACACACCTATTG
920852 GTATCGATAC
1 GTATCGATAC
920862 CCTTGAGTGA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (20 bp):
GTATCGATACACACCTATTG
Found at i:920862 original size:20 final size:19
Alignment explanation
Indices: 920825--920863 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
920815 TCGATAGCAG
920825 ACCTTTGGTATCAATACCC
1 ACCTTTGGTATCAATACCC
*
920844 ACCTATTGGTATCGATACCC
1 ACCT-TTGGTATCAATACCC
920864 TTGAGTGATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.26, C:0.31, G:0.13, T:0.31
Consensus pattern (19 bp):
ACCTTTGGTATCAATACCC
Found at i:925156 original size:21 final size:21
Alignment explanation
Indices: 925085--925174 Score: 92
Period size: 21 Copynumber: 4.1 Consensus size: 21
925075 TTTAGTTATG
*
925085 GCATCCTTTCATACCAATAAT
1 GCATCCTTTCATGCCAATAAT
* * **
925106 GCACCCATATGCATTTCAACT-AT
1 GCATCC-T-TTCATGCCAA-TAAT
925129 AGCATCCTTTCATGCCAATAAT
1 -GCATCCTTTCATGCCAATAAT
925151 GCATCCTTTCATGCCAATAAT
1 GCATCCTTTCATGCCAATAAT
925172 GCA
1 GCA
925175 CCCATATGCA
Statistics
Matches: 56, Mismatches: 8, Indels: 10
0.76 0.11 0.14
Matches are distributed among these distances:
21 30 0.54
22 10 0.18
23 10 0.18
24 6 0.11
ACGTcount: A:0.31, C:0.29, G:0.09, T:0.31
Consensus pattern (21 bp):
GCATCCTTTCATGCCAATAAT
Found at i:925205 original size:34 final size:34
Alignment explanation
Indices: 925161--925254 Score: 152
Period size: 34 Copynumber: 2.8 Consensus size: 34
925151 GCATCCTTTC
*
925161 ATGCCAATAATGCACCCATATGCATTATTCATTT
1 ATGCCGATAATGCACCCATATGCATTATTCATTT
*
925195 ATGCCGATAATGCACCCATATGCATTATTCTTTT
1 ATGCCGATAATGCACCCATATGCATTATTCATTT
* *
925229 ATGCCGATAATACACCTATATGCATT
1 ATGCCGATAATGCACCCATATGCATT
925255 TTAGCTATGG
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
34 56 1.00
ACGTcount: A:0.31, C:0.23, G:0.11, T:0.35
Consensus pattern (34 bp):
ATGCCGATAATGCACCCATATGCATTATTCATTT
Found at i:938612 original size:20 final size:20
Alignment explanation
Indices: 938587--938636 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
938577 CGTGAGGAGC
*
938587 AGATTTATCTCGCCGATGCA
1 AGATTTATCTCGCCGATACA
*
938607 AGATTTATCTCGTCGATACA
1 AGATTTATCTCGCCGATACA
938627 AGATTTATCT
1 AGATTTATCT
938637 AAAGAAGTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.36
Consensus pattern (20 bp):
AGATTTATCTCGCCGATACA
Found at i:942347 original size:20 final size:20
Alignment explanation
Indices: 942324--942374 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
942314 CATAAGGCAA
* * *
942324 AGTATCGATACTTAGAGGTC
1 AGTATCGATACTGAAAGGCC
*
942344 AGTATTGATACTGAAAGGCC
1 AGTATCGATACTGAAAGGCC
942364 AGTATCGATAC
1 AGTATCGATAC
942375 CAGTGTACAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.27
Consensus pattern (20 bp):
AGTATCGATACTGAAAGGCC
Found at i:947454 original size:31 final size:31
Alignment explanation
Indices: 947416--947537 Score: 129
Period size: 31 Copynumber: 3.9 Consensus size: 31
947406 CCTTGGAAAC
* *
947416 TGTCCATAAGTTCCGAAGAACCTAGGTAAAT
1 TGTCCATATGTTCCGAAGAACATAGGTAAAT
** * *
947447 TGTCCATATGTTCCTTAGAACATAGGTATAC
1 TGTCCATATGTTCCGAAGAACATAGGTAAAT
** *
947478 TGTCCATATGTCTCAAAAG-ACATAGGTAATT
1 TGTCCATATGT-TCCGAAGAACATAGGTAAAT
*
947509 CTGTCCATATGTTCCGTAGAACATAGGTA
1 -TGTCCATATGTTCCGAAGAACATAGGTA
947538 TACCCTCGAC
Statistics
Matches: 73, Mismatches: 15, Indels: 5
0.78 0.16 0.05
Matches are distributed among these distances:
31 49 0.67
32 24 0.33
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
Consensus pattern (31 bp):
TGTCCATATGTTCCGAAGAACATAGGTAAAT
Found at i:951699 original size:20 final size:20
Alignment explanation
Indices: 951662--951712 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
951652 CTGCTTGTGG
** *
951662 GTATCGATACTGATCATTTA
1 GTATCGATACCAAACATTTA
*
951682 GTATCGATACCAAACATTTG
1 GTATCGATACCAAACATTTA
*
951702 GTATCGTTACC
1 GTATCGATACC
951713 CCCTGACTGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.35
Consensus pattern (20 bp):
GTATCGATACCAAACATTTA
Found at i:962108 original size:21 final size:22
Alignment explanation
Indices: 962084--962124 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
962074 AAAAATGGAA
962084 ATATT-TTACTATAGGTCATCC
1 ATATTCTTACTATAGGTCATCC
* *
962105 ATATTCTTTCTATAGTTCAT
1 ATATTCTTACTATAGGTCAT
962125 AAACCTCCAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 5 0.29
22 12 0.71
ACGTcount: A:0.27, C:0.17, G:0.07, T:0.49
Consensus pattern (22 bp):
ATATTCTTACTATAGGTCATCC
Found at i:968516 original size:22 final size:22
Alignment explanation
Indices: 968483--968537 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
968473 ATACTGATGG
968483 GGTATCGATACTAAAAAAGGGA
1 GGTATCGATACTAAAAAAGGGA
*
968505 GGTATC-AGTACTAACAAAGGGA
1 GGTATCGA-TACTAAAAAAGGGA
*
968527 AGTATCGATAC
1 GGTATCGATAC
968538 CATGGATCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 1 0.03
22 27 0.93
23 1 0.03
ACGTcount: A:0.42, C:0.13, G:0.25, T:0.20
Consensus pattern (22 bp):
GGTATCGATACTAAAAAAGGGA
Done.